[1] "ofn"          "-oTGBMLGG-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/GBMLGG-TP/22573865/GBMLGG-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBMLGG-TP/22534381/transformed.cor.cli.txt"

nPatients in clinical file=1114, in cluster file=1090, common to both=1090
[1]   75 1090
[1] "AMP PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                           104                            986 
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                           104                            986 
[1] "AMP PEAK  2(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                        144                         946 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                        144                         946 
[1] "AMP PEAK  3(1Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE 
                          205                           885 
  AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE 
                          205                           885 
[1] "AMP PEAK  4(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE 
                        129                         961 
  AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE 
                        129                         961 
[1] "AMP PEAK  5(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE 
                           72                          1018 
  AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE 
                           72                          1018 
[1] "AMP PEAK  6(3Q26.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE 
                           132                            958 
  AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE 
                           132                            958 
[1] "AMP PEAK  7(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                           69                          1021 
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                           69                          1021 
[1] "AMP PEAK  8(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE 
                        138                         952 
  AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE 
                        138                         952 
[1] "AMP PEAK  9(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                            76                           1014 
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                            76                           1014 
[1] "AMP PEAK 10(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                          634                           456 
  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                          634                           456 
[1] "AMP PEAK 11(7Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE 
                           580                            510 
  AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE 
                           580                            510 
[1] "AMP PEAK 12(7Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                          635                           455 
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                          635                           455 
[1] "AMP PEAK 13(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE 
                          645                           445 
  AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE 
                          645                           445 
[1] "AMP PEAK 14(7Q32.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE 
                          658                           432 
  AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE 
                          658                           432 
[1] "AMP PEAK 15(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                           169                            921 
  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                           169                            921 
[1] "AMP PEAK 16(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                          141                           949 
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                          141                           949 
[1] "AMP PEAK 17(10P15.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                            88                           1002 
  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                            88                           1002 
[1] "AMP PEAK 18(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                          60                         1030 
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                          60                         1030 
[1] "AMP PEAK 19(11Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE 
                           112                            978 
  AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE 
                           112                            978 
[1] "AMP PEAK 20(12P13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE 
                            152                             938 
  AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE 
                            152                             938 
[1] "AMP PEAK 21(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE 
                           171                            919 
  AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE 
                           171                            919 
[1] "AMP PEAK 22(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE 
                         111                          979 
  AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE 
                         111                          979 
[1] "AMP PEAK 23(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE 
                          54                         1036 
  AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE 
                          54                         1036 
[1] "AMP PEAK 24(14Q32.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE 
                             44                            1046 
  AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE 
                             44                            1046 
[1] "AMP PEAK 25(17P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE 
                            74                           1016 
  AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE 
                            74                           1016 
[1] "AMP PEAK 26(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE 
                           128                            962 
  AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE 
                           128                            962 
[1] "AMP PEAK 27(19P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE 
                           375                            715 
  AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE 
                           375                            715 
[1] "AMP PEAK 28(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE 
                         247                          843 
  AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE 
                         247                          843 
[1] "AMP PEAK 29(19Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE 
                           231                            859 
  AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE 
                           231                            859 
[1] "AMP PEAK 30(XP11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE 
                           104                            986 
  AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE 
                           104                            986 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           318                            772 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           318                            772 
[1] "DEL PEAK  2(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                           347                            743 
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                           347                            743 
[1] "DEL PEAK  3(1P32.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                          257                           833 
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                          257                           833 
[1] "DEL PEAK  4(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                          234                           856 
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                          234                           856 
[1] "DEL PEAK  5(1Q42.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                            80                           1010 
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                            80                           1010 
[1] "DEL PEAK  6(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                         70                        1020 
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                         70                        1020 
[1] "DEL PEAK  7(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                           68                          1022 
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                           68                          1022 
[1] "DEL PEAK  8(2Q37.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                          121                           969 
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                          121                           969 
[1] "DEL PEAK  9(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE 
                           109                            981 
  DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE 
                           109                            981 
[1] "DEL PEAK 10(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                            95                            995 
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                            95                            995 
[1] "DEL PEAK 11(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                        107                         983 
  DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE 
                        107                         983 
[1] "DEL PEAK 12(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                          230                           860 
  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                          230                           860 
[1] "DEL PEAK 13(5P15.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE 
                           107                            983 
  DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE 
                           107                            983 
[1] "DEL PEAK 14(5Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                        133                         957 
  DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE 
                        133                         957 
[1] "DEL PEAK 15(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                          138                           952 
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                          138                           952 
[1] "DEL PEAK 16(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                           240                            850 
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                           240                            850 
[1] "DEL PEAK 17(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                        261                         829 
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                        261                         829 
[1] "DEL PEAK 18(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                           88                          1002 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                           88                          1002 
[1] "DEL PEAK 19(8Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE 
                           78                          1012 
  DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE 
                           78                          1012 
[1] "DEL PEAK 20(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE 
                          595                           495 
  DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE 
                          595                           495 
[1] "DEL PEAK 21(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                           553                            537 
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                           553                            537 
[1] "DEL PEAK 22(10P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                         553                          537 
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                         553                          537 
[1] "DEL PEAK 23(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                            628                             462 
  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                            628                             462 
[1] "DEL PEAK 24(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE 
                           665                            425 
  DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE 
                           665                            425 
[1] "DEL PEAK 25(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE 
                           234                            856 
  DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE 
                           234                            856 
[1] "DEL PEAK 26(11P15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE 
                           176                            914 
  DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE 
                           176                            914 
[1] "DEL PEAK 27(11P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE 
                           159                            931 
  DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE 
                           159                            931 
[1] "DEL PEAK 28(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE 
                           110                            980 
  DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE 
                           110                            980 
[1] "DEL PEAK 29(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE 
                         147                          943 
  DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE 
                         147                          943 
[1] "DEL PEAK 30(12Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE 
                         142                          948 
  DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE 
                         142                          948 
[1] "DEL PEAK 31(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE 
                           383                            707 
  DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE 
                           383                            707 
[1] "DEL PEAK 32(13Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE 
                           367                            723 
  DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE 
                           367                            723 
[1] "DEL PEAK 33(14Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE 
                           246                            844 
  DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE 
                           246                            844 
[1] "DEL PEAK 34(14Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE 
                           293                            797 
  DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE 
                           293                            797 
[1] "DEL PEAK 35(14Q31.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE 
                           276                            814 
  DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE 
                           276                            814 
[1] "DEL PEAK 36(15Q14) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE 
                         215                          875 
  DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE 
                         215                          875 
[1] "DEL PEAK 37(16P12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE 
                           114                            976 
  DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE 
                           114                            976 
[1] "DEL PEAK 38(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                           129                            961 
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                           129                            961 
[1] "DEL PEAK 39(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE 
                           116                            974 
  DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE 
                           116                            974 
[1] "DEL PEAK 40(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                            93                            997 
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                            93                            997 
[1] "DEL PEAK 41(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE 
                         155                          935 
  DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE 
                         155                          935 
[1] "DEL PEAK 42(19Q13.41) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE 
                            364                             726 
  DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE 
                            364                             726 
[1] "DEL PEAK 43(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE 
                            355                             735 
  DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE 
                            355                             735 
[1] "DEL PEAK 44(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                            289                             801 
  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                            289                             801 
[1] "DEL PEAK 45(XQ21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE 
                          183                           907 
  DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE 
                          183                           907 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "MIR_CNMF"                    "MIR_CHIERARCHICAL"          
 [5] "CN_CNMF"                     "METHLYATION_CNMF"           
 [7] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [9] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[11] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[13] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 14 rows and 1090 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MIR_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIR_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 1090 columns, 0 survival variables, and 14 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "MIR_CNMF"                    "MIR_CHIERARCHICAL"          
 [5] "CN_CNMF"                     "METHLYATION_CNMF"           
 [7] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [9] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[11] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[13] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIR_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIR_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P36.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.21) MUTATED       27     21     18     17
  AMP PEAK  1(1P36.21) WILD-TYPE    131     75    119    100
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           27                            131
  CLUS_2                           21                             75
  CLUS_3                           18                            119
  CLUS_4                           17                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.21) MUTATED       25     15     12     31
  AMP PEAK  1(1P36.21) WILD-TYPE    123     87     88    127
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           25                            123
  CLUS_2                           15                             87
  CLUS_3                           12                             88
  CLUS_4                           31                            127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.21) MUTATED       21     38     12     18
  AMP PEAK  1(1P36.21) WILD-TYPE    122    149     78    108
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           21                            122
  CLUS_2                           38                            149
  CLUS_3                           12                             78
  CLUS_4                           18                            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED       46     15     28
  AMP PEAK  1(1P36.21) WILD-TYPE    247    109    101
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           46                            247
  CLUS_2                           15                            109
  CLUS_3                           28                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED       85      3     16
  AMP PEAK  1(1P36.21) WILD-TYPE    444    467     75
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           85                            444
  CLUS_2                            3                            467
  CLUS_3                           16                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.21) MUTATED       21      5      1      0
  AMP PEAK  1(1P36.21) WILD-TYPE    156    220     87    160
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           21                            156
  CLUS_2                            5                            220
  CLUS_3                            1                             87
  CLUS_4                            0                            160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.21) MUTATED       10      4     18      6
  AMP PEAK  1(1P36.21) WILD-TYPE    203    164    138    103
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           10                            203
  CLUS_2                            4                            164
  CLUS_3                           18                            138
  CLUS_4                            6                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED       14     21      3
  AMP PEAK  1(1P36.21) WILD-TYPE    220    233    155
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           14                            220
  CLUS_2                           21                            233
  CLUS_3                            3                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED       39      0      1
  AMP PEAK  1(1P36.21) WILD-TYPE    205    189    226
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           39                            205
  CLUS_2                            0                            189
  CLUS_3                            1                            226
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED       35      5      0
  AMP PEAK  1(1P36.21) WILD-TYPE    168    185    267
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           35                            168
  CLUS_2                            5                            185
  CLUS_3                            0                            267
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.21) MUTATED        7      4      0      1
  AMP PEAK  1(1P36.21) WILD-TYPE    133    103     82    179
D1V11, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            7                            133
  CLUS_2                            4                            103
  CLUS_3                            0                             82
  CLUS_4                            1                            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED        3      0      9
  AMP PEAK  1(1P36.21) WILD-TYPE    219    184     94
D1V12, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            3                            219
  CLUS_2                            0                            184
  CLUS_3                            9                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.21) MUTATED        4      7      0      1
  AMP PEAK  1(1P36.21) WILD-TYPE    123    112    105    153
D1V13, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            4                            123
  CLUS_2                            7                            112
  CLUS_3                            0                            105
  CLUS_4                            1                            153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P36.21) MUTATED        1      4      0      0      5      2
  AMP PEAK  1(1P36.21) WILD-TYPE     98     73    118     56     58     90
D1V14, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            1                             98
  CLUS_2                            4                             73
  CLUS_3                            0                            118
  CLUS_4                            0                             56
  CLUS_5                            5                             58
  CLUS_6                            2                             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q22) MUTATED       26     28     17     21
  AMP PEAK  2(1Q22) WILD-TYPE    132     68    120     96
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        26                         132
  CLUS_2                        28                          68
  CLUS_3                        17                         120
  CLUS_4                        21                          96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q22) MUTATED       27     25      9     31
  AMP PEAK  2(1Q22) WILD-TYPE    121     77     91    127
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        27                         121
  CLUS_2                        25                          77
  CLUS_3                         9                          91
  CLUS_4                        31                         127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q22) MUTATED       15     42     13     27
  AMP PEAK  2(1Q22) WILD-TYPE    128    145     77     99
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        15                         128
  CLUS_2                        42                         145
  CLUS_3                        13                          77
  CLUS_4                        27                          99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q22) MUTATED       57     17     23
  AMP PEAK  2(1Q22) WILD-TYPE    236    107    106
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        57                         236
  CLUS_2                        17                         107
  CLUS_3                        23                         106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q22) MUTATED       88     35     21
  AMP PEAK  2(1Q22) WILD-TYPE    441    435     70
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        88                         441
  CLUS_2                        35                         435
  CLUS_3                        21                          70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q22) MUTATED       29     19      3      8
  AMP PEAK  2(1Q22) WILD-TYPE    148    206     85    152
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        29                         148
  CLUS_2                        19                         206
  CLUS_3                         3                          85
  CLUS_4                         8                         152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q22) MUTATED       16     14     28     11
  AMP PEAK  2(1Q22) WILD-TYPE    197    154    128     98
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        16                         197
  CLUS_2                        14                         154
  CLUS_3                        28                         128
  CLUS_4                        11                          98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q22) MUTATED       27     31     11
  AMP PEAK  2(1Q22) WILD-TYPE    207    223    147
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        27                         207
  CLUS_2                        31                         223
  CLUS_3                        11                         147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q22) MUTATED       46     11     13
  AMP PEAK  2(1Q22) WILD-TYPE    198    178    214
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        46                         198
  CLUS_2                        11                         178
  CLUS_3                        13                         214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q22) MUTATED       37     19     14
  AMP PEAK  2(1Q22) WILD-TYPE    166    171    253
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        37                         166
  CLUS_2                        19                         171
  CLUS_3                        14                         253
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q22) MUTATED       16      9      4     13
  AMP PEAK  2(1Q22) WILD-TYPE    124     98     78    167
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        16                         124
  CLUS_2                         9                          98
  CLUS_3                         4                          78
  CLUS_4                        13                         167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q22) MUTATED       14     14     14
  AMP PEAK  2(1Q22) WILD-TYPE    208    170     89
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        14                         208
  CLUS_2                        14                         170
  CLUS_3                        14                          89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q22) MUTATED       11     16      1     14
  AMP PEAK  2(1Q22) WILD-TYPE    116    103    104    140
D2V13, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        11                         116
  CLUS_2                        16                         103
  CLUS_3                         1                         104
  CLUS_4                        14                         140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q22) MUTATED        9      7      8      3      8      7
  AMP PEAK  2(1Q22) WILD-TYPE     90     70    110     53     55     85
D2V14, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                         9                          90
  CLUS_2                         7                          70
  CLUS_3                         8                         110
  CLUS_4                         3                          53
  CLUS_5                         8                          55
  CLUS_6                         7                          85
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q32.1) MUTATED       40     30     38     32
  AMP PEAK  3(1Q32.1) WILD-TYPE    118     66     99     85
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  CLUS_1                          40                           118
  CLUS_2                          30                            66
  CLUS_3                          38                            99
  CLUS_4                          32                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q32.1) MUTATED       37     22     25     56
  AMP PEAK  3(1Q32.1) WILD-TYPE    111     80     75    102
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  CLUS_1                          37                           111
  CLUS_2                          22                            80
  CLUS_3                          25                            75
  CLUS_4                          56                           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q32.1) MUTATED       31     54     28     38
  AMP PEAK  3(1Q32.1) WILD-TYPE    112    133     62     88
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  CLUS_1                          31                           112
  CLUS_2                          54                           133
  CLUS_3                          28                            62
  CLUS_4                          38                            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q32.1) MUTATED       85     26     40
  AMP PEAK  3(1Q32.1) WILD-TYPE    208     98     89
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  CLUS_1                          85                           208
  CLUS_2                          26                            98
  CLUS_3                          40                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q32.1) MUTATED      158     26     21
  AMP PEAK  3(1Q32.1) WILD-TYPE    371    444     70
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  CLUS_1                         158                           371
  CLUS_2                          26                           444
  CLUS_3                          21                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q32.1) MUTATED       50     11     10      6
  AMP PEAK  3(1Q32.1) WILD-TYPE    127    214     78    154
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  CLUS_1                          50                           127
  CLUS_2                          11                           214
  CLUS_3                          10                            78
  CLUS_4                           6                           154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q32.1) MUTATED       23     22     33     17
  AMP PEAK  3(1Q32.1) WILD-TYPE    190    146    123     92
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  CLUS_1                          23                           190
  CLUS_2                          22                           146
  CLUS_3                          33                           123
  CLUS_4                          17                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q32.1) MUTATED       35     43     17
  AMP PEAK  3(1Q32.1) WILD-TYPE    199    211    141
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  CLUS_1                          35                           199
  CLUS_2                          43                           211
  CLUS_3                          17                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q32.1) MUTATED       64     16      4
  AMP PEAK  3(1Q32.1) WILD-TYPE    180    173    223
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  CLUS_1                          64                           180
  CLUS_2                          16                           173
  CLUS_3                           4                           223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q32.1) MUTATED       58      8     18
  AMP PEAK  3(1Q32.1) WILD-TYPE    145    182    249
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  CLUS_1                          58                           145
  CLUS_2                           8                           182
  CLUS_3                          18                           249
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q32.1) MUTATED       18      7      4     16
  AMP PEAK  3(1Q32.1) WILD-TYPE    122    100     78    164
D3V11, multiclass
        clus
vv       AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  CLUS_1                          18                           122
  CLUS_2                           7                           100
  CLUS_3                           4                            78
  CLUS_4                          16                           164
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q32.1) MUTATED        8     14     23
  AMP PEAK  3(1Q32.1) WILD-TYPE    214    170     80
D3V12, multiclass
        clus
vv       AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  CLUS_1                           8                           214
  CLUS_2                          14                           170
  CLUS_3                          23                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q32.1) MUTATED        9     19      2     15
  AMP PEAK  3(1Q32.1) WILD-TYPE    118    100    103    139
D3V13, multiclass
        clus
vv       AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  CLUS_1                           9                           118
  CLUS_2                          19                           100
  CLUS_3                           2                           103
  CLUS_4                          15                           139
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q32.1) MUTATED        5      3     11      1     19      6
  AMP PEAK  3(1Q32.1) WILD-TYPE     94     74    107     55     44     86
D3V14, multiclass
        clus
vv       AMP PEAK  3(1Q32.1) MUTATED AMP PEAK  3(1Q32.1) WILD-TYPE
  CLUS_1                           5                            94
  CLUS_2                           3                            74
  CLUS_3                          11                           107
  CLUS_4                           1                            55
  CLUS_5                          19                            44
  CLUS_6                           6                            86
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q44) MUTATED       23     25     22     20
  AMP PEAK  4(1Q44) WILD-TYPE    135     71    115     97
D4V1, multiclass
        clus
vv       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        23                         135
  CLUS_2                        25                          71
  CLUS_3                        22                         115
  CLUS_4                        20                          97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q44) MUTATED       25     21     14     30
  AMP PEAK  4(1Q44) WILD-TYPE    123     81     86    128
D4V2, multiclass
        clus
vv       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        25                         123
  CLUS_2                        21                          81
  CLUS_3                        14                          86
  CLUS_4                        30                         128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q44) MUTATED       19     36     14     26
  AMP PEAK  4(1Q44) WILD-TYPE    124    151     76    100
D4V3, multiclass
        clus
vv       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        19                         124
  CLUS_2                        36                         151
  CLUS_3                        14                          76
  CLUS_4                        26                         100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q44) MUTATED       54     16     25
  AMP PEAK  4(1Q44) WILD-TYPE    239    108    104
D4V4, multiclass
        clus
vv       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        54                         239
  CLUS_2                        16                         108
  CLUS_3                        25                         104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q44) MUTATED       91     22     16
  AMP PEAK  4(1Q44) WILD-TYPE    438    448     75
D4V5, multiclass
        clus
vv       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        91                         438
  CLUS_2                        22                         448
  CLUS_3                        16                          75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q44) MUTATED       25     12      3      5
  AMP PEAK  4(1Q44) WILD-TYPE    152    213     85    155
D4V6, multiclass
        clus
vv       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        25                         152
  CLUS_2                        12                         213
  CLUS_3                         3                          85
  CLUS_4                         5                         155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q44) MUTATED       11     13     23      7
  AMP PEAK  4(1Q44) WILD-TYPE    202    155    133    102
D4V7, multiclass
        clus
vv       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        11                         202
  CLUS_2                        13                         155
  CLUS_3                        23                         133
  CLUS_4                         7                         102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q44) MUTATED       19     27      8
  AMP PEAK  4(1Q44) WILD-TYPE    215    227    150
D4V8, multiclass
        clus
vv       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        19                         215
  CLUS_2                        27                         227
  CLUS_3                         8                         150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q44) MUTATED       41     10      5
  AMP PEAK  4(1Q44) WILD-TYPE    203    179    222
D4V9, multiclass
        clus
vv       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        41                         203
  CLUS_2                        10                         179
  CLUS_3                         5                         222
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q44) MUTATED       35      9     12
  AMP PEAK  4(1Q44) WILD-TYPE    168    181    255
D4V10, multiclass
        clus
vv       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        35                         168
  CLUS_2                         9                         181
  CLUS_3                        12                         255
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q44) MUTATED       12      5      3     10
  AMP PEAK  4(1Q44) WILD-TYPE    128    102     79    170
D4V11, multiclass
        clus
vv       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  CLUS_1                        12                         128
  CLUS_2                         5                         102
  CLUS_3                         3                          79
  CLUS_4                        10                         170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q44) MUTATED        8     10     12
  AMP PEAK  4(1Q44) WILD-TYPE    214    174     91
D4V12, multiclass
        clus
vv       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         8                         214
  CLUS_2                        10                         174
  CLUS_3                        12                          91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q44) MUTATED        3     13      2     12
  AMP PEAK  4(1Q44) WILD-TYPE    124    106    103    142
D4V13, multiclass
        clus
vv       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         3                         124
  CLUS_2                        13                         106
  CLUS_3                         2                         103
  CLUS_4                        12                         142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(1Q44) MUTATED        4      4      7      1      8      6
  AMP PEAK  4(1Q44) WILD-TYPE     95     73    111     55     55     86
D4V14, multiclass
        clus
vv       AMP PEAK  4(1Q44) MUTATED AMP PEAK  4(1Q44) WILD-TYPE
  CLUS_1                         4                          95
  CLUS_2                         4                          73
  CLUS_3                         7                         111
  CLUS_4                         1                          55
  CLUS_5                         8                          55
  CLUS_6                         6                          86
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(2P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2P24.3) MUTATED       11     13      7     14
  AMP PEAK  5(2P24.3) WILD-TYPE    147     83    130    103
D5V1, multiclass
        clus
vv       AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  CLUS_1                          11                           147
  CLUS_2                          13                            83
  CLUS_3                           7                           130
  CLUS_4                          14                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2P24.3) MUTATED       11     17      4     13
  AMP PEAK  5(2P24.3) WILD-TYPE    137     85     96    145
D5V2, multiclass
        clus
vv       AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  CLUS_1                          11                           137
  CLUS_2                          17                            85
  CLUS_3                           4                            96
  CLUS_4                          13                           145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2P24.3) MUTATED        9     20      8     11
  AMP PEAK  5(2P24.3) WILD-TYPE    134    167     82    115
D5V3, multiclass
        clus
vv       AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  CLUS_1                           9                           134
  CLUS_2                          20                           167
  CLUS_3                           8                            82
  CLUS_4                          11                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2P24.3) MUTATED       27     10     11
  AMP PEAK  5(2P24.3) WILD-TYPE    266    114    118
D5V4, multiclass
        clus
vv       AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  CLUS_1                          27                           266
  CLUS_2                          10                           114
  CLUS_3                          11                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2P24.3) MUTATED       44     20      8
  AMP PEAK  5(2P24.3) WILD-TYPE    485    450     83
D5V5, multiclass
        clus
vv       AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  CLUS_1                          44                           485
  CLUS_2                          20                           450
  CLUS_3                           8                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2P24.3) MUTATED       14     12      3      4
  AMP PEAK  5(2P24.3) WILD-TYPE    163    213     85    156
D5V6, multiclass
        clus
vv       AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  CLUS_1                          14                           163
  CLUS_2                          12                           213
  CLUS_3                           3                            85
  CLUS_4                           4                           156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2P24.3) MUTATED        8     10     14      7
  AMP PEAK  5(2P24.3) WILD-TYPE    205    158    142    102
D5V7, multiclass
        clus
vv       AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  CLUS_1                           8                           205
  CLUS_2                          10                           158
  CLUS_3                          14                           142
  CLUS_4                           7                           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2P24.3) MUTATED       12     19      8
  AMP PEAK  5(2P24.3) WILD-TYPE    222    235    150
D5V8, multiclass
        clus
vv       AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  CLUS_1                          12                           222
  CLUS_2                          19                           235
  CLUS_3                           8                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2P24.3) MUTATED       23      7      8
  AMP PEAK  5(2P24.3) WILD-TYPE    221    182    219
D5V9, multiclass
        clus
vv       AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  CLUS_1                          23                           221
  CLUS_2                           7                           182
  CLUS_3                           8                           219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2P24.3) MUTATED       20     10      8
  AMP PEAK  5(2P24.3) WILD-TYPE    183    180    259
D5V10, multiclass
        clus
vv       AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  CLUS_1                          20                           183
  CLUS_2                          10                           180
  CLUS_3                           8                           259
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2P24.3) MUTATED        7      7      2      7
  AMP PEAK  5(2P24.3) WILD-TYPE    133    100     80    173
D5V11, multiclass
        clus
vv       AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  CLUS_1                           7                           133
  CLUS_2                           7                           100
  CLUS_3                           2                            80
  CLUS_4                           7                           173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2P24.3) MUTATED        8      5     10
  AMP PEAK  5(2P24.3) WILD-TYPE    214    179     93
D5V12, multiclass
        clus
vv       AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  CLUS_1                           8                           214
  CLUS_2                           5                           179
  CLUS_3                          10                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2P24.3) MUTATED        3     15      0      5
  AMP PEAK  5(2P24.3) WILD-TYPE    124    104    105    149
D5V13, multiclass
        clus
vv       AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  CLUS_1                           3                           124
  CLUS_2                          15                           104
  CLUS_3                           0                           105
  CLUS_4                           5                           149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(2P24.3) MUTATED        4      6      2      1      7      3
  AMP PEAK  5(2P24.3) WILD-TYPE     95     71    116     55     56     89
D5V14, multiclass
        clus
vv       AMP PEAK  5(2P24.3) MUTATED AMP PEAK  5(2P24.3) WILD-TYPE
  CLUS_1                           4                            95
  CLUS_2                           6                            71
  CLUS_3                           2                           116
  CLUS_4                           1                            55
  CLUS_5                           7                            56
  CLUS_6                           3                            89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(3Q26.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.33) MUTATED       30     28     15     28
  AMP PEAK  6(3Q26.33) WILD-TYPE    128     68    122     89
D6V1, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           30                            128
  CLUS_2                           28                             68
  CLUS_3                           15                            122
  CLUS_4                           28                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.33) MUTATED       25     25     15     36
  AMP PEAK  6(3Q26.33) WILD-TYPE    123     77     85    122
D6V2, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           25                            123
  CLUS_2                           25                             77
  CLUS_3                           15                             85
  CLUS_4                           36                            122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.33) MUTATED       24     44     20     21
  AMP PEAK  6(3Q26.33) WILD-TYPE    119    143     70    105
D6V3, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           24                            119
  CLUS_2                           44                            143
  CLUS_3                           20                             70
  CLUS_4                           21                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.33) MUTATED       59     17     33
  AMP PEAK  6(3Q26.33) WILD-TYPE    234    107     96
D6V4, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           59                            234
  CLUS_2                           17                            107
  CLUS_3                           33                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.33) MUTATED      102     19     11
  AMP PEAK  6(3Q26.33) WILD-TYPE    427    451     80
D6V5, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                          102                            427
  CLUS_2                           19                            451
  CLUS_3                           11                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.33) MUTATED       31      9      2      3
  AMP PEAK  6(3Q26.33) WILD-TYPE    146    216     86    157
D6V6, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           31                            146
  CLUS_2                            9                            216
  CLUS_3                            2                             86
  CLUS_4                            3                            157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.33) MUTATED       18      5     20      9
  AMP PEAK  6(3Q26.33) WILD-TYPE    195    163    136    100
D6V7, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           18                            195
  CLUS_2                            5                            163
  CLUS_3                           20                            136
  CLUS_4                            9                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.33) MUTATED       24     24      4
  AMP PEAK  6(3Q26.33) WILD-TYPE    210    230    154
D6V8, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           24                            210
  CLUS_2                           24                            230
  CLUS_3                            4                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.33) MUTATED       45      4      7
  AMP PEAK  6(3Q26.33) WILD-TYPE    199    185    220
D6V9, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           45                            199
  CLUS_2                            4                            185
  CLUS_3                            7                            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.33) MUTATED       41      9      6
  AMP PEAK  6(3Q26.33) WILD-TYPE    162    181    261
D6V10, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           41                            162
  CLUS_2                            9                            181
  CLUS_3                            6                            261
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.33) MUTATED       10      8      2      1
  AMP PEAK  6(3Q26.33) WILD-TYPE    130     99     80    179
D6V11, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                           10                            130
  CLUS_2                            8                             99
  CLUS_3                            2                             80
  CLUS_4                            1                            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.33) MUTATED        9      3      9
  AMP PEAK  6(3Q26.33) WILD-TYPE    213    181     94
D6V12, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                            9                            213
  CLUS_2                            3                            181
  CLUS_3                            9                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.33) MUTATED        5     12      1      3
  AMP PEAK  6(3Q26.33) WILD-TYPE    122    107    104    151
D6V13, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                            5                            122
  CLUS_2                           12                            107
  CLUS_3                            1                            104
  CLUS_4                            3                            151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(3Q26.33) MUTATED        6      2      1      0      8      4
  AMP PEAK  6(3Q26.33) WILD-TYPE     93     75    117     56     55     88
D6V14, multiclass
        clus
vv       AMP PEAK  6(3Q26.33) MUTATED AMP PEAK  6(3Q26.33) WILD-TYPE
  CLUS_1                            6                             93
  CLUS_2                            2                             75
  CLUS_3                            1                            117
  CLUS_4                            0                             56
  CLUS_5                            8                             55
  CLUS_6                            4                             88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       11     12     13      6
  AMP PEAK  7(4P16.3) WILD-TYPE    147     84    124    111
D7V1, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          11                           147
  CLUS_2                          12                            84
  CLUS_3                          13                           124
  CLUS_4                           6                           111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       10     10     10     12
  AMP PEAK  7(4P16.3) WILD-TYPE    138     92     90    146
D7V2, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          10                           138
  CLUS_2                          10                            92
  CLUS_3                          10                            90
  CLUS_4                          12                           146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       13     19      7      8
  AMP PEAK  7(4P16.3) WILD-TYPE    130    168     83    118
D7V3, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          13                           130
  CLUS_2                          19                           168
  CLUS_3                           7                            83
  CLUS_4                           8                           118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       19     11     17
  AMP PEAK  7(4P16.3) WILD-TYPE    274    113    112
D7V4, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          19                           274
  CLUS_2                          11                           113
  CLUS_3                          17                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       46     12     11
  AMP PEAK  7(4P16.3) WILD-TYPE    483    458     80
D7V5, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          46                           483
  CLUS_2                          12                           458
  CLUS_3                          11                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       13     12      4      1
  AMP PEAK  7(4P16.3) WILD-TYPE    164    213     84    159
D7V6, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          13                           164
  CLUS_2                          12                           213
  CLUS_3                           4                            84
  CLUS_4                           1                           159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       13      8     11      6
  AMP PEAK  7(4P16.3) WILD-TYPE    200    160    145    103
D7V7, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          13                           200
  CLUS_2                           8                           160
  CLUS_3                          11                           145
  CLUS_4                           6                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       20     10      8
  AMP PEAK  7(4P16.3) WILD-TYPE    214    244    150
D7V8, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          20                           214
  CLUS_2                          10                           244
  CLUS_3                           8                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       26      3      8
  AMP PEAK  7(4P16.3) WILD-TYPE    218    186    219
D7V9, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          26                           218
  CLUS_2                           3                           186
  CLUS_3                           8                           219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       22     11      4
  AMP PEAK  7(4P16.3) WILD-TYPE    181    179    263
D7V10, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          22                           181
  CLUS_2                          11                           179
  CLUS_3                           4                           263
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       11      2      2      6
  AMP PEAK  7(4P16.3) WILD-TYPE    129    105     80    174
D7V11, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          11                           129
  CLUS_2                           2                           105
  CLUS_3                           2                            80
  CLUS_4                           6                           174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED        8      6      7
  AMP PEAK  7(4P16.3) WILD-TYPE    214    178     96
D7V12, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           8                           214
  CLUS_2                           6                           178
  CLUS_3                           7                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED        5     10      1      5
  AMP PEAK  7(4P16.3) WILD-TYPE    122    109    104    149
D7V13, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           5                           122
  CLUS_2                          10                           109
  CLUS_3                           1                           104
  CLUS_4                           5                           149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(4P16.3) MUTATED        5      4      2      1      5      4
  AMP PEAK  7(4P16.3) WILD-TYPE     94     73    116     55     58     88
D7V14, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           5                            94
  CLUS_2                           4                            73
  CLUS_3                           2                           116
  CLUS_4                           1                            55
  CLUS_5                           5                            58
  CLUS_6                           4                            88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q12) MUTATED       22     34     19     24
  AMP PEAK  8(4Q12) WILD-TYPE    136     62    118     93
D8V1, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                        22                         136
  CLUS_2                        34                          62
  CLUS_3                        19                         118
  CLUS_4                        24                          93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q12) MUTATED       18     31     16     34
  AMP PEAK  8(4Q12) WILD-TYPE    130     71     84    124
D8V2, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                        18                         130
  CLUS_2                        31                          71
  CLUS_3                        16                          84
  CLUS_4                        34                         124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q12) MUTATED       23     40     19     22
  AMP PEAK  8(4Q12) WILD-TYPE    120    147     71    104
D8V3, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                        23                         120
  CLUS_2                        40                         147
  CLUS_3                        19                          71
  CLUS_4                        22                         104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q12) MUTATED       60     19     25
  AMP PEAK  8(4Q12) WILD-TYPE    233    105    104
D8V4, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                        60                         233
  CLUS_2                        19                         105
  CLUS_3                        25                         104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q12) MUTATED       94     28     16
  AMP PEAK  8(4Q12) WILD-TYPE    435    442     75
D8V5, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                        94                         435
  CLUS_2                        28                         442
  CLUS_3                        16                          75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q12) MUTATED       31     19      3      2
  AMP PEAK  8(4Q12) WILD-TYPE    146    206     85    158
D8V6, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                        31                         146
  CLUS_2                        19                         206
  CLUS_3                         3                          85
  CLUS_4                         2                         158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q12) MUTATED       25     14     22      6
  AMP PEAK  8(4Q12) WILD-TYPE    188    154    134    103
D8V7, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                        25                         188
  CLUS_2                        14                         154
  CLUS_3                        22                         134
  CLUS_4                         6                         103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q12) MUTATED       33     19     15
  AMP PEAK  8(4Q12) WILD-TYPE    201    235    143
D8V8, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                        33                         201
  CLUS_2                        19                         235
  CLUS_3                        15                         143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q12) MUTATED       45      5      9
  AMP PEAK  8(4Q12) WILD-TYPE    199    184    218
D8V9, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                        45                         199
  CLUS_2                         5                         184
  CLUS_3                         9                         218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q12) MUTATED       37     16      6
  AMP PEAK  8(4Q12) WILD-TYPE    166    174    261
D8V10, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                        37                         166
  CLUS_2                        16                         174
  CLUS_3                         6                         261
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q12) MUTATED        6     15      2      7
  AMP PEAK  8(4Q12) WILD-TYPE    134     92     80    173
D8V11, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         6                         134
  CLUS_2                        15                          92
  CLUS_3                         2                          80
  CLUS_4                         7                         173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q12) MUTATED        7      7     16
  AMP PEAK  8(4Q12) WILD-TYPE    215    177     87
D8V12, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         7                         215
  CLUS_2                         7                         177
  CLUS_3                        16                          87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q12) MUTATED        5     16      2      7
  AMP PEAK  8(4Q12) WILD-TYPE    122    103    103    147
D8V13, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         5                         122
  CLUS_2                        16                         103
  CLUS_3                         2                         103
  CLUS_4                         7                         147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(4Q12) MUTATED        3     12      5      0      7      3
  AMP PEAK  8(4Q12) WILD-TYPE     96     65    113     56     56     89
D8V14, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         3                          96
  CLUS_2                        12                          65
  CLUS_3                         5                         113
  CLUS_4                         0                          56
  CLUS_5                         7                          56
  CLUS_6                         3                          89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       24     10      8     11
  AMP PEAK  9(5P15.33) WILD-TYPE    134     86    129    106
D9V1, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           24                            134
  CLUS_2                           10                             86
  CLUS_3                            8                            129
  CLUS_4                           11                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       23      8      6     16
  AMP PEAK  9(5P15.33) WILD-TYPE    125     94     94    142
D9V2, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           23                            125
  CLUS_2                            8                             94
  CLUS_3                            6                             94
  CLUS_4                           16                            142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       20     13      7     18
  AMP PEAK  9(5P15.33) WILD-TYPE    123    174     83    108
D9V3, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           20                            123
  CLUS_2                           13                            174
  CLUS_3                            7                             83
  CLUS_4                           18                            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       26     18     14
  AMP PEAK  9(5P15.33) WILD-TYPE    267    106    115
D9V4, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           26                            267
  CLUS_2                           18                            106
  CLUS_3                           14                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       54     14      8
  AMP PEAK  9(5P15.33) WILD-TYPE    475    456     83
D9V5, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           54                            475
  CLUS_2                           14                            456
  CLUS_3                            8                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       12      7      4      1
  AMP PEAK  9(5P15.33) WILD-TYPE    165    218     84    159
D9V6, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           12                            165
  CLUS_2                            7                            218
  CLUS_3                            4                             84
  CLUS_4                            1                            159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       10      4      9      5
  AMP PEAK  9(5P15.33) WILD-TYPE    203    164    147    104
D9V7, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           10                            203
  CLUS_2                            4                            164
  CLUS_3                            9                            147
  CLUS_4                            5                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       11     14      3
  AMP PEAK  9(5P15.33) WILD-TYPE    223    240    155
D9V8, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           11                            223
  CLUS_2                           14                            240
  CLUS_3                            3                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       21      3      3
  AMP PEAK  9(5P15.33) WILD-TYPE    223    186    224
D9V9, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           21                            223
  CLUS_2                            3                            186
  CLUS_3                            3                            224
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       18      5      4
  AMP PEAK  9(5P15.33) WILD-TYPE    185    185    263
D9V10, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           18                            185
  CLUS_2                            5                            185
  CLUS_3                            4                            263
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED        5      6      0      5
  AMP PEAK  9(5P15.33) WILD-TYPE    135    101     82    175
D9V11, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            5                            135
  CLUS_2                            6                            101
  CLUS_3                            0                             82
  CLUS_4                            5                            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED        3      4      9
  AMP PEAK  9(5P15.33) WILD-TYPE    219    180     94
D9V12, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            3                            219
  CLUS_2                            4                            180
  CLUS_3                            9                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED        2     11      1      2
  AMP PEAK  9(5P15.33) WILD-TYPE    125    108    104    152
D9V13, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            2                            125
  CLUS_2                           11                            108
  CLUS_3                            1                            104
  CLUS_4                            2                            152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(5P15.33) MUTATED        1      4      1      0      7      3
  AMP PEAK  9(5P15.33) WILD-TYPE     98     73    117     56     56     89
D9V14, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            1                             98
  CLUS_2                            4                             73
  CLUS_3                            1                            117
  CLUS_4                            0                             56
  CLUS_5                            7                             56
  CLUS_6                            3                             89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P11.2) MUTATED      150     69    132     92
  AMP PEAK 10(7P11.2) WILD-TYPE      8     27      5     25
D10V1, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                         150                             8
  CLUS_2                          69                            27
  CLUS_3                         132                             5
  CLUS_4                          92                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P11.2) MUTATED      136     60     99    148
  AMP PEAK 10(7P11.2) WILD-TYPE     12     42      1     10
D10V2, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                         136                            12
  CLUS_2                          60                            42
  CLUS_3                          99                             1
  CLUS_4                         148                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P11.2) MUTATED      139    151     74    116
  AMP PEAK 10(7P11.2) WILD-TYPE      4     36     16     10
D10V3, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                         139                             4
  CLUS_2                         151                            36
  CLUS_3                          74                            16
  CLUS_4                         116                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED      234    120    126
  AMP PEAK 10(7P11.2) WILD-TYPE     59      4      3
D10V4, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                         234                            59
  CLUS_2                         120                             4
  CLUS_3                         126                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED      518     60     56
  AMP PEAK 10(7P11.2) WILD-TYPE     11    410     35
D10V5, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                         518                            11
  CLUS_2                          60                           410
  CLUS_3                          56                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P11.2) MUTATED      162     40     33     14
  AMP PEAK 10(7P11.2) WILD-TYPE     15    185     55    146
D10V6, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                         162                            15
  CLUS_2                          40                           185
  CLUS_3                          33                            55
  CLUS_4                          14                           146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P11.2) MUTATED      100     57     89     51
  AMP PEAK 10(7P11.2) WILD-TYPE    113    111     67     58
D10V7, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                         100                           113
  CLUS_2                          57                           111
  CLUS_3                          89                            67
  CLUS_4                          51                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED      119    128     50
  AMP PEAK 10(7P11.2) WILD-TYPE    115    126    108
D10V8, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                         119                           115
  CLUS_2                         128                           126
  CLUS_3                          50                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED      190     35     33
  AMP PEAK 10(7P11.2) WILD-TYPE     54    154    194
D10V9, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                         190                            54
  CLUS_2                          35                           154
  CLUS_3                          33                           194
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED      183     30     45
  AMP PEAK 10(7P11.2) WILD-TYPE     20    160    222
D10V10, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                         183                            20
  CLUS_2                          30                           160
  CLUS_3                          45                           222
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P11.2) MUTATED       45     37     11     32
  AMP PEAK 10(7P11.2) WILD-TYPE     95     70     71    148
D10V11, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          45                            95
  CLUS_2                          37                            70
  CLUS_3                          11                            71
  CLUS_4                          32                           148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED       36     28     61
  AMP PEAK 10(7P11.2) WILD-TYPE    186    156     42
D10V12, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          36                           186
  CLUS_2                          28                           156
  CLUS_3                          61                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P11.2) MUTATED       33     50      9     32
  AMP PEAK 10(7P11.2) WILD-TYPE     94     69     96    122
D10V13, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          33                            94
  CLUS_2                          50                            69
  CLUS_3                           9                            96
  CLUS_4                          32                           122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7P11.2) MUTATED       15     12     20      7     53     17
  AMP PEAK 10(7P11.2) WILD-TYPE     84     65     98     49     10     75
D10V14, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          15                            84
  CLUS_2                          12                            65
  CLUS_3                          20                            98
  CLUS_4                           7                            49
  CLUS_5                          53                            10
  CLUS_6                          17                            75
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(7Q11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q11.21) MUTATED      142     63    113     85
  AMP PEAK 11(7Q11.21) WILD-TYPE     16     33     24     32
D11V1, multiclass
        clus
vv       AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE
  CLUS_1                          142                             16
  CLUS_2                           63                             33
  CLUS_3                          113                             24
  CLUS_4                           85                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q11.21) MUTATED      129     55     82    137
  AMP PEAK 11(7Q11.21) WILD-TYPE     19     47     18     21
D11V2, multiclass
        clus
vv       AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE
  CLUS_1                          129                             19
  CLUS_2                           55                             47
  CLUS_3                           82                             18
  CLUS_4                          137                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q11.21) MUTATED      131    138     63    108
  AMP PEAK 11(7Q11.21) WILD-TYPE     12     49     27     18
D11V3, multiclass
        clus
vv       AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE
  CLUS_1                          131                             12
  CLUS_2                          138                             49
  CLUS_3                           63                             27
  CLUS_4                          108                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q11.21) MUTATED      216    114    110
  AMP PEAK 11(7Q11.21) WILD-TYPE     77     10     19
D11V4, multiclass
        clus
vv       AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE
  CLUS_1                          216                             77
  CLUS_2                          114                             10
  CLUS_3                          110                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q11.21) MUTATED      476     54     50
  AMP PEAK 11(7Q11.21) WILD-TYPE     53    416     41
D11V5, multiclass
        clus
vv       AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE
  CLUS_1                          476                             53
  CLUS_2                           54                            416
  CLUS_3                           50                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q11.21) MUTATED      150     36     30     14
  AMP PEAK 11(7Q11.21) WILD-TYPE     27    189     58    146
D11V6, multiclass
        clus
vv       AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE
  CLUS_1                          150                             27
  CLUS_2                           36                            189
  CLUS_3                           30                             58
  CLUS_4                           14                            146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q11.21) MUTATED       92     54     79     47
  AMP PEAK 11(7Q11.21) WILD-TYPE    121    114     77     62
D11V7, multiclass
        clus
vv       AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE
  CLUS_1                           92                            121
  CLUS_2                           54                            114
  CLUS_3                           79                             77
  CLUS_4                           47                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q11.21) MUTATED      110    115     47
  AMP PEAK 11(7Q11.21) WILD-TYPE    124    139    111
D11V8, multiclass
        clus
vv       AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE
  CLUS_1                          110                            124
  CLUS_2                          115                            139
  CLUS_3                           47                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q11.21) MUTATED      168     35     31
  AMP PEAK 11(7Q11.21) WILD-TYPE     76    154    196
D11V9, multiclass
        clus
vv       AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE
  CLUS_1                          168                             76
  CLUS_2                           35                            154
  CLUS_3                           31                            196
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q11.21) MUTATED      163     26     45
  AMP PEAK 11(7Q11.21) WILD-TYPE     40    164    222
D11V10, multiclass
        clus
vv       AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE
  CLUS_1                          163                             40
  CLUS_2                           26                            164
  CLUS_3                           45                            222
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q11.21) MUTATED       40     32     11     31
  AMP PEAK 11(7Q11.21) WILD-TYPE    100     75     71    149
D11V11, multiclass
        clus
vv       AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE
  CLUS_1                           40                            100
  CLUS_2                           32                             75
  CLUS_3                           11                             71
  CLUS_4                           31                            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q11.21) MUTATED       33     27     54
  AMP PEAK 11(7Q11.21) WILD-TYPE    189    157     49
D11V12, multiclass
        clus
vv       AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE
  CLUS_1                           33                            189
  CLUS_2                           27                            157
  CLUS_3                           54                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q11.21) MUTATED       30     43      8     32
  AMP PEAK 11(7Q11.21) WILD-TYPE     97     76     97    122
D11V13, multiclass
        clus
vv       AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE
  CLUS_1                           30                             97
  CLUS_2                           43                             76
  CLUS_3                            8                             97
  CLUS_4                           32                            122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7Q11.21) MUTATED       13     10     20      7     46     17
  AMP PEAK 11(7Q11.21) WILD-TYPE     86     67     98     49     17     75
D11V14, multiclass
        clus
vv       AMP PEAK 11(7Q11.21) MUTATED AMP PEAK 11(7Q11.21) WILD-TYPE
  CLUS_1                           13                             86
  CLUS_2                           10                             67
  CLUS_3                           20                             98
  CLUS_4                            7                             49
  CLUS_5                           46                             17
  CLUS_6                           17                             75
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(7Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED      141     66    120     91
  AMP PEAK 12(7Q21.2) WILD-TYPE     17     30     17     26
D12V1, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                         141                            17
  CLUS_2                          66                            30
  CLUS_3                         120                            17
  CLUS_4                          91                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED      126     62     89    141
  AMP PEAK 12(7Q21.2) WILD-TYPE     22     40     11     17
D12V2, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                         126                            22
  CLUS_2                          62                            40
  CLUS_3                          89                            11
  CLUS_4                         141                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED      127    147     71    107
  AMP PEAK 12(7Q21.2) WILD-TYPE     16     40     19     19
D12V3, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                         127                            16
  CLUS_2                         147                            40
  CLUS_3                          71                            19
  CLUS_4                         107                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED      224    111    117
  AMP PEAK 12(7Q21.2) WILD-TYPE     69     13     12
D12V4, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                         224                            69
  CLUS_2                         111                            13
  CLUS_3                         117                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED      487     93     55
  AMP PEAK 12(7Q21.2) WILD-TYPE     42    377     36
D12V5, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                         487                            42
  CLUS_2                          93                           377
  CLUS_3                          55                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED      153     65     33     24
  AMP PEAK 12(7Q21.2) WILD-TYPE     24    160     55    136
D12V6, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                         153                            24
  CLUS_2                          65                           160
  CLUS_3                          33                            55
  CLUS_4                          24                           136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED      102     68     86     52
  AMP PEAK 12(7Q21.2) WILD-TYPE    111    100     70     57
D12V7, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                         102                           111
  CLUS_2                          68                           100
  CLUS_3                          86                            70
  CLUS_4                          52                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED      123    125     60
  AMP PEAK 12(7Q21.2) WILD-TYPE    111    129     98
D12V8, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                         123                           111
  CLUS_2                         125                           129
  CLUS_3                          60                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED      180     48     53
  AMP PEAK 12(7Q21.2) WILD-TYPE     64    141    174
D12V9, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                         180                            64
  CLUS_2                          48                           141
  CLUS_3                          53                           174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED      171     48     62
  AMP PEAK 12(7Q21.2) WILD-TYPE     32    142    205
D12V10, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                         171                            32
  CLUS_2                          48                           142
  CLUS_3                          62                           205
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED       51     41     15     46
  AMP PEAK 12(7Q21.2) WILD-TYPE     89     66     67    134
D12V11, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          51                            89
  CLUS_2                          41                            66
  CLUS_3                          15                            67
  CLUS_4                          46                           134
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED       51     43     59
  AMP PEAK 12(7Q21.2) WILD-TYPE    171    141     44
D12V12, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          51                           171
  CLUS_2                          43                           141
  CLUS_3                          59                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED       40     51     16     45
  AMP PEAK 12(7Q21.2) WILD-TYPE     87     68     89    109
D12V13, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          40                            87
  CLUS_2                          51                            68
  CLUS_3                          16                            89
  CLUS_4                          45                           109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(7Q21.2) MUTATED       22     15     29      7     49     30
  AMP PEAK 12(7Q21.2) WILD-TYPE     77     62     89     49     14     62
D12V14, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          22                            77
  CLUS_2                          15                            62
  CLUS_3                          29                            89
  CLUS_4                           7                            49
  CLUS_5                          49                            14
  CLUS_6                          30                            62
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7Q31.2) MUTATED      141     67    113     91
  AMP PEAK 13(7Q31.2) WILD-TYPE     17     29     24     26
D13V1, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                         141                            17
  CLUS_2                          67                            29
  CLUS_3                         113                            24
  CLUS_4                          91                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7Q31.2) MUTATED      130     63     83    136
  AMP PEAK 13(7Q31.2) WILD-TYPE     18     39     17     22
D13V2, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                         130                            18
  CLUS_2                          63                            39
  CLUS_3                          83                            17
  CLUS_4                         136                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7Q31.2) MUTATED      126    141     72    106
  AMP PEAK 13(7Q31.2) WILD-TYPE     17     46     18     20
D13V3, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                         126                            17
  CLUS_2                         141                            46
  CLUS_3                          72                            18
  CLUS_4                         106                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7Q31.2) MUTATED      225    109    111
  AMP PEAK 13(7Q31.2) WILD-TYPE     68     15     18
D13V4, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                         225                            68
  CLUS_2                         109                            15
  CLUS_3                         111                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7Q31.2) MUTATED      478    111     56
  AMP PEAK 13(7Q31.2) WILD-TYPE     51    359     35
D13V5, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                         478                            51
  CLUS_2                         111                           359
  CLUS_3                          56                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7Q31.2) MUTATED      152     78     34     28
  AMP PEAK 13(7Q31.2) WILD-TYPE     25    147     54    132
D13V6, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                         152                            25
  CLUS_2                          78                           147
  CLUS_3                          34                            54
  CLUS_4                          28                           132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7Q31.2) MUTATED      108     71     87     53
  AMP PEAK 13(7Q31.2) WILD-TYPE    105     97     69     56
D13V7, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                         108                           105
  CLUS_2                          71                            97
  CLUS_3                          87                            69
  CLUS_4                          53                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7Q31.2) MUTATED      126    129     64
  AMP PEAK 13(7Q31.2) WILD-TYPE    108    125     94
D13V8, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                         126                           108
  CLUS_2                         129                           125
  CLUS_3                          64                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7Q31.2) MUTATED      176     54     65
  AMP PEAK 13(7Q31.2) WILD-TYPE     68    135    162
D13V9, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                         176                            68
  CLUS_2                          54                           135
  CLUS_3                          65                           162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7Q31.2) MUTATED      168     57     70
  AMP PEAK 13(7Q31.2) WILD-TYPE     35    133    197
D13V10, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                         168                            35
  CLUS_2                          57                           133
  CLUS_3                          70                           197
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7Q31.2) MUTATED       56     44     19     52
  AMP PEAK 13(7Q31.2) WILD-TYPE     84     63     63    128
D13V11, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                          56                            84
  CLUS_2                          44                            63
  CLUS_3                          19                            63
  CLUS_4                          52                           128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7Q31.2) MUTATED       64     48     59
  AMP PEAK 13(7Q31.2) WILD-TYPE    158    136     44
D13V12, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                          64                           158
  CLUS_2                          48                           136
  CLUS_3                          59                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7Q31.2) MUTATED       43     55     21     51
  AMP PEAK 13(7Q31.2) WILD-TYPE     84     64     84    103
D13V13, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                          43                            84
  CLUS_2                          55                            64
  CLUS_3                          21                            84
  CLUS_4                          51                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(7Q31.2) MUTATED       27     18     32      9     49     35
  AMP PEAK 13(7Q31.2) WILD-TYPE     72     59     86     47     14     57
D13V14, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                          27                            72
  CLUS_2                          18                            59
  CLUS_3                          32                            86
  CLUS_4                           9                            47
  CLUS_5                          49                            14
  CLUS_6                          35                            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(7Q32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(7Q32.3) MUTATED      141     66    115     94
  AMP PEAK 14(7Q32.3) WILD-TYPE     17     30     22     23
D14V1, multiclass
        clus
vv       AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE
  CLUS_1                         141                            17
  CLUS_2                          66                            30
  CLUS_3                         115                            22
  CLUS_4                          94                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(7Q32.3) MUTATED      127     66     86    137
  AMP PEAK 14(7Q32.3) WILD-TYPE     21     36     14     21
D14V2, multiclass
        clus
vv       AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE
  CLUS_1                         127                            21
  CLUS_2                          66                            36
  CLUS_3                          86                            14
  CLUS_4                         137                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(7Q32.3) MUTATED      126    146     72    106
  AMP PEAK 14(7Q32.3) WILD-TYPE     17     41     18     20
D14V3, multiclass
        clus
vv       AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE
  CLUS_1                         126                            17
  CLUS_2                         146                            41
  CLUS_3                          72                            18
  CLUS_4                         106                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(7Q32.3) MUTATED      227    110    113
  AMP PEAK 14(7Q32.3) WILD-TYPE     66     14     16
D14V4, multiclass
        clus
vv       AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE
  CLUS_1                         227                            66
  CLUS_2                         110                            14
  CLUS_3                         113                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(7Q32.3) MUTATED      481    122     55
  AMP PEAK 14(7Q32.3) WILD-TYPE     48    348     36
D14V5, multiclass
        clus
vv       AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE
  CLUS_1                         481                            48
  CLUS_2                         122                           348
  CLUS_3                          55                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(7Q32.3) MUTATED      152     83     35     29
  AMP PEAK 14(7Q32.3) WILD-TYPE     25    142     53    131
D14V6, multiclass
        clus
vv       AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE
  CLUS_1                         152                            25
  CLUS_2                          83                           142
  CLUS_3                          35                            53
  CLUS_4                          29                           131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(7Q32.3) MUTATED      112     74     89     56
  AMP PEAK 14(7Q32.3) WILD-TYPE    101     94     67     53
D14V7, multiclass
        clus
vv       AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE
  CLUS_1                         112                           101
  CLUS_2                          74                            94
  CLUS_3                          89                            67
  CLUS_4                          56                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(7Q32.3) MUTATED      131    134     66
  AMP PEAK 14(7Q32.3) WILD-TYPE    103    120     92
D14V8, multiclass
        clus
vv       AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE
  CLUS_1                         131                           103
  CLUS_2                         134                           120
  CLUS_3                          66                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(7Q32.3) MUTATED      176     58     69
  AMP PEAK 14(7Q32.3) WILD-TYPE     68    131    158
D14V9, multiclass
        clus
vv       AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE
  CLUS_1                         176                            68
  CLUS_2                          58                           131
  CLUS_3                          69                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(7Q32.3) MUTATED      168     60     75
  AMP PEAK 14(7Q32.3) WILD-TYPE     35    130    192
D14V10, multiclass
        clus
vv       AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE
  CLUS_1                         168                            35
  CLUS_2                          60                           130
  CLUS_3                          75                           192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(7Q32.3) MUTATED       58     44     21     56
  AMP PEAK 14(7Q32.3) WILD-TYPE     82     63     61    124
D14V11, multiclass
        clus
vv       AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE
  CLUS_1                          58                            82
  CLUS_2                          44                            63
  CLUS_3                          21                            61
  CLUS_4                          56                           124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(7Q32.3) MUTATED       67     52     60
  AMP PEAK 14(7Q32.3) WILD-TYPE    155    132     43
D14V12, multiclass
        clus
vv       AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE
  CLUS_1                          67                           155
  CLUS_2                          52                           132
  CLUS_3                          60                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(7Q32.3) MUTATED       45     57     23     53
  AMP PEAK 14(7Q32.3) WILD-TYPE     82     62     82    101
D14V13, multiclass
        clus
vv       AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE
  CLUS_1                          45                            82
  CLUS_2                          57                            62
  CLUS_3                          23                            82
  CLUS_4                          53                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(7Q32.3) MUTATED       31     19     34     10     49     35
  AMP PEAK 14(7Q32.3) WILD-TYPE     68     58     84     46     14     57
D14V14, multiclass
        clus
vv       AMP PEAK 14(7Q32.3) MUTATED AMP PEAK 14(7Q32.3) WILD-TYPE
  CLUS_1                          31                            68
  CLUS_2                          19                            58
  CLUS_3                          34                            84
  CLUS_4                          10                            46
  CLUS_5                          49                            14
  CLUS_6                          35                            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED        8     25      6     22
  AMP PEAK 15(8Q24.21) WILD-TYPE    150     71    131     95
D15V1, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                            8                            150
  CLUS_2                           25                             71
  CLUS_3                            6                            131
  CLUS_4                           22                             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED       10     29      6     16
  AMP PEAK 15(8Q24.21) WILD-TYPE    138     73     94    142
D15V2, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           10                            138
  CLUS_2                           29                             73
  CLUS_3                            6                             94
  CLUS_4                           16                            142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED       10     31     13     10
  AMP PEAK 15(8Q24.21) WILD-TYPE    133    156     77    116
D15V3, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           10                            133
  CLUS_2                           31                            156
  CLUS_3                           13                             77
  CLUS_4                           10                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED       41     11     12
  AMP PEAK 15(8Q24.21) WILD-TYPE    252    113    117
D15V4, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           41                            252
  CLUS_2                           11                            113
  CLUS_3                           12                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED       51     94     24
  AMP PEAK 15(8Q24.21) WILD-TYPE    478    376     67
D15V5, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           51                            478
  CLUS_2                           94                            376
  CLUS_3                           24                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED       13     83      7     11
  AMP PEAK 15(8Q24.21) WILD-TYPE    164    142     81    149
D15V6, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           13                            164
  CLUS_2                           83                            142
  CLUS_3                            7                             81
  CLUS_4                           11                            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED       34     25     31     22
  AMP PEAK 15(8Q24.21) WILD-TYPE    179    143    125     87
D15V7, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           34                            179
  CLUS_2                           25                            143
  CLUS_3                           31                            125
  CLUS_4                           22                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED       43     47     22
  AMP PEAK 15(8Q24.21) WILD-TYPE    191    207    136
D15V8, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           43                            191
  CLUS_2                           47                            207
  CLUS_3                           22                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED       32     31     58
  AMP PEAK 15(8Q24.21) WILD-TYPE    212    158    169
D15V9, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           32                            212
  CLUS_2                           31                            158
  CLUS_3                           58                            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED       21     63     37
  AMP PEAK 15(8Q24.21) WILD-TYPE    182    127    230
D15V10, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           21                            182
  CLUS_2                           63                            127
  CLUS_3                           37                            230
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED       34     22      6     36
  AMP PEAK 15(8Q24.21) WILD-TYPE    106     85     76    144
D15V11, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           34                            106
  CLUS_2                           22                             85
  CLUS_3                            6                             76
  CLUS_4                           36                            144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED       58     30     10
  AMP PEAK 15(8Q24.21) WILD-TYPE    164    154     93
D15V12, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           58                            164
  CLUS_2                           30                            154
  CLUS_3                           10                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED       37     22     15     24
  AMP PEAK 15(8Q24.21) WILD-TYPE     90     97     90    130
D15V13, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           37                             90
  CLUS_2                           22                             97
  CLUS_3                           15                             90
  CLUS_4                           24                            130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(8Q24.21) MUTATED       33     16     14      2      3     30
  AMP PEAK 15(8Q24.21) WILD-TYPE     66     61    104     54     60     62
D15V14, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           33                             66
  CLUS_2                           16                             61
  CLUS_3                           14                            104
  CLUS_4                            2                             54
  CLUS_5                            3                             60
  CLUS_6                           30                             62
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9Q34.3) MUTATED       26     26     17     19
  AMP PEAK 16(9Q34.3) WILD-TYPE    132     70    120     98
D16V1, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          26                           132
  CLUS_2                          26                            70
  CLUS_3                          17                           120
  CLUS_4                          19                            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9Q34.3) MUTATED       23     28     10     27
  AMP PEAK 16(9Q34.3) WILD-TYPE    125     74     90    131
D16V2, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          23                           125
  CLUS_2                          28                            74
  CLUS_3                          10                            90
  CLUS_4                          27                           131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9Q34.3) MUTATED       18     37     17     20
  AMP PEAK 16(9Q34.3) WILD-TYPE    125    150     73    106
D16V3, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          18                           125
  CLUS_2                          37                           150
  CLUS_3                          17                            73
  CLUS_4                          20                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9Q34.3) MUTATED       59     15     18
  AMP PEAK 16(9Q34.3) WILD-TYPE    234    109    111
D16V4, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          59                           234
  CLUS_2                          15                           109
  CLUS_3                          18                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9Q34.3) MUTATED       79     41     21
  AMP PEAK 16(9Q34.3) WILD-TYPE    450    429     70
D16V5, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          79                           450
  CLUS_2                          41                           429
  CLUS_3                          21                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9Q34.3) MUTATED       20     27      7      9
  AMP PEAK 16(9Q34.3) WILD-TYPE    157    198     81    151
D16V6, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          20                           157
  CLUS_2                          27                           198
  CLUS_3                           7                            81
  CLUS_4                           9                           151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9Q34.3) MUTATED       14     17     24     11
  AMP PEAK 16(9Q34.3) WILD-TYPE    199    151    132     98
D16V7, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          14                           199
  CLUS_2                          17                           151
  CLUS_3                          24                           132
  CLUS_4                          11                            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9Q34.3) MUTATED       24     26     16
  AMP PEAK 16(9Q34.3) WILD-TYPE    210    228    142
D16V8, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          24                           210
  CLUS_2                          26                           228
  CLUS_3                          16                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9Q34.3) MUTATED       40     14     18
  AMP PEAK 16(9Q34.3) WILD-TYPE    204    175    209
D16V9, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          40                           204
  CLUS_2                          14                           175
  CLUS_3                          18                           209
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9Q34.3) MUTATED       31     22     19
  AMP PEAK 16(9Q34.3) WILD-TYPE    172    168    248
D16V10, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          31                           172
  CLUS_2                          22                           168
  CLUS_3                          19                           248
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9Q34.3) MUTATED       11     15      7     12
  AMP PEAK 16(9Q34.3) WILD-TYPE    129     92     75    168
D16V11, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          11                           129
  CLUS_2                          15                            92
  CLUS_3                           7                            75
  CLUS_4                          12                           168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9Q34.3) MUTATED       16     14     15
  AMP PEAK 16(9Q34.3) WILD-TYPE    206    170     88
D16V12, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          16                           206
  CLUS_2                          14                           170
  CLUS_3                          15                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9Q34.3) MUTATED       10     12     10     13
  AMP PEAK 16(9Q34.3) WILD-TYPE    117    107     95    141
D16V13, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          10                           117
  CLUS_2                          12                           107
  CLUS_3                          10                            95
  CLUS_4                          13                           141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(9Q34.3) MUTATED        6     12      7      3      6     11
  AMP PEAK 16(9Q34.3) WILD-TYPE     93     65    111     53     57     81
D16V14, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                           6                            93
  CLUS_2                          12                            65
  CLUS_3                           7                           111
  CLUS_4                           3                            53
  CLUS_5                           6                            57
  CLUS_6                          11                            81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(10P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(10P15.1) MUTATED        1      8      1      8
  AMP PEAK 17(10P15.1) WILD-TYPE    157     88    136    109
D17V1, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                            1                            157
  CLUS_2                            8                             88
  CLUS_3                            1                            136
  CLUS_4                            8                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(10P15.1) MUTATED        2     13      1      2
  AMP PEAK 17(10P15.1) WILD-TYPE    146     89     99    156
D17V2, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                            2                            146
  CLUS_2                           13                             89
  CLUS_3                            1                             99
  CLUS_4                            2                            156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(10P15.1) MUTATED        1     12      3      1
  AMP PEAK 17(10P15.1) WILD-TYPE    142    175     87    125
D17V3, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                            1                            142
  CLUS_2                           12                            175
  CLUS_3                            3                             87
  CLUS_4                            1                            125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(10P15.1) MUTATED       14      2      1
  AMP PEAK 17(10P15.1) WILD-TYPE    279    122    128
D17V4, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                           14                            279
  CLUS_2                            2                            122
  CLUS_3                            1                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(10P15.1) MUTATED        6     76      6
  AMP PEAK 17(10P15.1) WILD-TYPE    523    394     85
D17V5, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                            6                            523
  CLUS_2                           76                            394
  CLUS_3                            6                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(10P15.1) MUTATED        2     64      5      0
  AMP PEAK 17(10P15.1) WILD-TYPE    175    161     83    160
D17V6, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                            2                            175
  CLUS_2                           64                            161
  CLUS_3                            5                             83
  CLUS_4                            0                            160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(10P15.1) MUTATED       22      9     11     22
  AMP PEAK 17(10P15.1) WILD-TYPE    191    159    145     87
D17V7, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                           22                            191
  CLUS_2                            9                            159
  CLUS_3                           11                            145
  CLUS_4                           22                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(10P15.1) MUTATED       29     25     10
  AMP PEAK 17(10P15.1) WILD-TYPE    205    229    148
D17V8, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                           29                            205
  CLUS_2                           25                            229
  CLUS_3                           10                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(10P15.1) MUTATED       12     17     43
  AMP PEAK 17(10P15.1) WILD-TYPE    232    172    184
D17V9, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                           12                            232
  CLUS_2                           17                            172
  CLUS_3                           43                            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(10P15.1) MUTATED        3     50     19
  AMP PEAK 17(10P15.1) WILD-TYPE    200    140    248
D17V10, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                            3                            200
  CLUS_2                           50                            140
  CLUS_3                           19                            248
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(10P15.1) MUTATED       18     27      3     20
  AMP PEAK 17(10P15.1) WILD-TYPE    122     80     79    160
D17V11, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                           18                            122
  CLUS_2                           27                             80
  CLUS_3                            3                             79
  CLUS_4                           20                            160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(10P15.1) MUTATED       36     19     13
  AMP PEAK 17(10P15.1) WILD-TYPE    186    165     90
D17V12, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                           36                            186
  CLUS_2                           19                            165
  CLUS_3                           13                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(10P15.1) MUTATED       24     22      5     17
  AMP PEAK 17(10P15.1) WILD-TYPE    103     97    100    137
D17V13, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                           24                            103
  CLUS_2                           22                             97
  CLUS_3                            5                            100
  CLUS_4                           17                            137
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(10P15.1) MUTATED       26     15     10      0      1     16
  AMP PEAK 17(10P15.1) WILD-TYPE     73     62    108     56     62     76
D17V14, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                           26                             73
  CLUS_2                           15                             62
  CLUS_3                           10                            108
  CLUS_4                            0                             56
  CLUS_5                            1                             62
  CLUS_6                           16                             76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(11P13) MUTATED        8      6      6      8
  AMP PEAK 18(11P13) WILD-TYPE    150     90    131    109
D18V1, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                          8                          150
  CLUS_2                          6                           90
  CLUS_3                          6                          131
  CLUS_4                          8                          109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(11P13) MUTATED        7      5      3     13
  AMP PEAK 18(11P13) WILD-TYPE    141     97     97    145
D18V2, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                          7                          141
  CLUS_2                          5                           97
  CLUS_3                          3                           97
  CLUS_4                         13                          145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(11P13) MUTATED        8     11      2      8
  AMP PEAK 18(11P13) WILD-TYPE    135    176     88    118
D18V3, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                          8                          135
  CLUS_2                         11                          176
  CLUS_3                          2                           88
  CLUS_4                          8                          118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(11P13) MUTATED       12     10      7
  AMP PEAK 18(11P13) WILD-TYPE    281    114    122
D18V4, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         12                          281
  CLUS_2                         10                          114
  CLUS_3                          7                          122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(11P13) MUTATED       29     30      1
  AMP PEAK 18(11P13) WILD-TYPE    500    440     90
D18V5, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         29                          500
  CLUS_2                         30                          440
  CLUS_3                          1                           90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(11P13) MUTATED        5      9      0     20
  AMP PEAK 18(11P13) WILD-TYPE    172    216     88    140
D18V6, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                          5                          172
  CLUS_2                          9                          216
  CLUS_3                          0                           88
  CLUS_4                         20                          140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(11P13) MUTATED       14      7     11      2
  AMP PEAK 18(11P13) WILD-TYPE    199    161    145    107
D18V7, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         14                          199
  CLUS_2                          7                          161
  CLUS_3                         11                          145
  CLUS_4                          2                          107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(11P13) MUTATED       16     14      4
  AMP PEAK 18(11P13) WILD-TYPE    218    240    154
D18V8, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         16                          218
  CLUS_2                         14                          240
  CLUS_3                          4                          154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(11P13) MUTATED       10     11     17
  AMP PEAK 18(11P13) WILD-TYPE    234    178    210
D18V9, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         10                          234
  CLUS_2                         11                          178
  CLUS_3                         17                          210
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(11P13) MUTATED        8      8     22
  AMP PEAK 18(11P13) WILD-TYPE    195    182    245
D18V10, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                          8                          195
  CLUS_2                          8                          182
  CLUS_3                         22                          245
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(11P13) MUTATED        6      4     11      8
  AMP PEAK 18(11P13) WILD-TYPE    134    103     71    172
D18V11, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                          6                          134
  CLUS_2                          4                          103
  CLUS_3                         11                           71
  CLUS_4                          8                          172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(11P13) MUTATED       13     14      2
  AMP PEAK 18(11P13) WILD-TYPE    209    170    101
D18V12, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                         13                          209
  CLUS_2                         14                          170
  CLUS_3                          2                          101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(11P13) MUTATED        6      3     10     10
  AMP PEAK 18(11P13) WILD-TYPE    121    116     95    144
D18V13, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                          6                          121
  CLUS_2                          3                          116
  CLUS_3                         10                           95
  CLUS_4                         10                          144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(11P13) MUTATED        5      1      6      8      0      9
  AMP PEAK 18(11P13) WILD-TYPE     94     76    112     48     63     83
D18V14, multiclass
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  CLUS_1                          5                           94
  CLUS_2                          1                           76
  CLUS_3                          6                          112
  CLUS_4                          8                           48
  CLUS_5                          0                           63
  CLUS_6                          9                           83
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(11Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(11Q24.1) MUTATED        4      7      2     11
  AMP PEAK 19(11Q24.1) WILD-TYPE    154     89    135    106
D19V1, multiclass
        clus
vv       AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE
  CLUS_1                            4                            154
  CLUS_2                            7                             89
  CLUS_3                            2                            135
  CLUS_4                           11                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(11Q24.1) MUTATED        4     11      1      8
  AMP PEAK 19(11Q24.1) WILD-TYPE    144     91     99    150
D19V2, multiclass
        clus
vv       AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE
  CLUS_1                            4                            144
  CLUS_2                           11                             91
  CLUS_3                            1                             99
  CLUS_4                            8                            150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(11Q24.1) MUTATED        3     13      4      3
  AMP PEAK 19(11Q24.1) WILD-TYPE    140    174     86    123
D19V3, multiclass
        clus
vv       AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE
  CLUS_1                            3                            140
  CLUS_2                           13                            174
  CLUS_3                            4                             86
  CLUS_4                            3                            123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(11Q24.1) MUTATED       18      2      3
  AMP PEAK 19(11Q24.1) WILD-TYPE    275    122    126
D19V4, multiclass
        clus
vv       AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE
  CLUS_1                           18                            275
  CLUS_2                            2                            122
  CLUS_3                            3                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(11Q24.1) MUTATED       22     78     12
  AMP PEAK 19(11Q24.1) WILD-TYPE    507    392     79
D19V5, multiclass
        clus
vv       AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE
  CLUS_1                           22                            507
  CLUS_2                           78                            392
  CLUS_3                           12                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(11Q24.1) MUTATED        9     51      5     28
  AMP PEAK 19(11Q24.1) WILD-TYPE    168    174     83    132
D19V6, multiclass
        clus
vv       AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE
  CLUS_1                            9                            168
  CLUS_2                           51                            174
  CLUS_3                            5                             83
  CLUS_4                           28                            132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(11Q24.1) MUTATED       34     17     17     15
  AMP PEAK 19(11Q24.1) WILD-TYPE    179    151    139     94
D19V7, multiclass
        clus
vv       AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE
  CLUS_1                           34                            179
  CLUS_2                           17                            151
  CLUS_3                           17                            139
  CLUS_4                           15                             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(11Q24.1) MUTATED       39     29     15
  AMP PEAK 19(11Q24.1) WILD-TYPE    195    225    143
D19V8, multiclass
        clus
vv       AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE
  CLUS_1                           39                            195
  CLUS_2                           29                            225
  CLUS_3                           15                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(11Q24.1) MUTATED       16     27     50
  AMP PEAK 19(11Q24.1) WILD-TYPE    228    162    177
D19V9, multiclass
        clus
vv       AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE
  CLUS_1                           16                            228
  CLUS_2                           27                            162
  CLUS_3                           50                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(11Q24.1) MUTATED        8     39     46
  AMP PEAK 19(11Q24.1) WILD-TYPE    195    151    221
D19V10, multiclass
        clus
vv       AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE
  CLUS_1                            8                            195
  CLUS_2                           39                            151
  CLUS_3                           46                            221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(11Q24.1) MUTATED       28     15     14     30
  AMP PEAK 19(11Q24.1) WILD-TYPE    112     92     68    150
D19V11, multiclass
        clus
vv       AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE
  CLUS_1                           28                            112
  CLUS_2                           15                             92
  CLUS_3                           14                             68
  CLUS_4                           30                            150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(11Q24.1) MUTATED       46     29     12
  AMP PEAK 19(11Q24.1) WILD-TYPE    176    155     91
D19V12, multiclass
        clus
vv       AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE
  CLUS_1                           46                            176
  CLUS_2                           29                            155
  CLUS_3                           12                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(11Q24.1) MUTATED       27     17     16     27
  AMP PEAK 19(11Q24.1) WILD-TYPE    100    102     89    127
D19V13, multiclass
        clus
vv       AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE
  CLUS_1                           27                            100
  CLUS_2                           17                            102
  CLUS_3                           16                             89
  CLUS_4                           27                            127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(11Q24.1) MUTATED       22     14     18     10      2     21
  AMP PEAK 19(11Q24.1) WILD-TYPE     77     63    100     46     61     71
D19V14, multiclass
        clus
vv       AMP PEAK 19(11Q24.1) MUTATED AMP PEAK 19(11Q24.1) WILD-TYPE
  CLUS_1                           22                             77
  CLUS_2                           14                             63
  CLUS_3                           18                            100
  CLUS_4                           10                             46
  CLUS_5                            2                             61
  CLUS_6                           21                             71
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(12P13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(12P13.32) MUTATED       22     16     18     20
  AMP PEAK 20(12P13.32) WILD-TYPE    136     80    119     97
D20V1, multiclass
        clus
vv       AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE
  CLUS_1                            22                             136
  CLUS_2                            16                              80
  CLUS_3                            18                             119
  CLUS_4                            20                              97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(12P13.32) MUTATED       20     21     13     22
  AMP PEAK 20(12P13.32) WILD-TYPE    128     81     87    136
D20V2, multiclass
        clus
vv       AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE
  CLUS_1                            20                             128
  CLUS_2                            21                              81
  CLUS_3                            13                              87
  CLUS_4                            22                             136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(12P13.32) MUTATED       17     34     12     19
  AMP PEAK 20(12P13.32) WILD-TYPE    126    153     78    107
D20V3, multiclass
        clus
vv       AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE
  CLUS_1                            17                             126
  CLUS_2                            34                             153
  CLUS_3                            12                              78
  CLUS_4                            19                             107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(12P13.32) MUTATED       39     20     23
  AMP PEAK 20(12P13.32) WILD-TYPE    254    104    106
D20V4, multiclass
        clus
vv       AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE
  CLUS_1                            39                             254
  CLUS_2                            20                             104
  CLUS_3                            23                             106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(12P13.32) MUTATED       76     62     14
  AMP PEAK 20(12P13.32) WILD-TYPE    453    408     77
D20V5, multiclass
        clus
vv       AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE
  CLUS_1                            76                             453
  CLUS_2                            62                             408
  CLUS_3                            14                              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(12P13.32) MUTATED       23     56      4      4
  AMP PEAK 20(12P13.32) WILD-TYPE    154    169     84    156
D20V6, multiclass
        clus
vv       AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE
  CLUS_1                            23                             154
  CLUS_2                            56                             169
  CLUS_3                             4                              84
  CLUS_4                             4                             156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(12P13.32) MUTATED       19     15     35     16
  AMP PEAK 20(12P13.32) WILD-TYPE    194    153    121     93
D20V7, multiclass
        clus
vv       AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE
  CLUS_1                            19                             194
  CLUS_2                            15                             153
  CLUS_3                            35                             121
  CLUS_4                            16                              93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(12P13.32) MUTATED       31     43     11
  AMP PEAK 20(12P13.32) WILD-TYPE    203    211    147
D20V8, multiclass
        clus
vv       AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE
  CLUS_1                            31                             203
  CLUS_2                            43                             211
  CLUS_3                            11                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(12P13.32) MUTATED       38     14     39
  AMP PEAK 20(12P13.32) WILD-TYPE    206    175    188
D20V9, multiclass
        clus
vv       AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE
  CLUS_1                            38                             206
  CLUS_2                            14                             175
  CLUS_3                            39                             188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(12P13.32) MUTATED       29     43     19
  AMP PEAK 20(12P13.32) WILD-TYPE    174    147    248
D20V10, multiclass
        clus
vv       AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE
  CLUS_1                            29                             174
  CLUS_2                            43                             147
  CLUS_3                            19                             248
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(12P13.32) MUTATED       17     26      9     16
  AMP PEAK 20(12P13.32) WILD-TYPE    123     81     73    164
D20V11, multiclass
        clus
vv       AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE
  CLUS_1                            17                             123
  CLUS_2                            26                              81
  CLUS_3                             9                              73
  CLUS_4                            16                             164
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(12P13.32) MUTATED       35     13     20
  AMP PEAK 20(12P13.32) WILD-TYPE    187    171     83
D20V12, multiclass
        clus
vv       AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE
  CLUS_1                            35                             187
  CLUS_2                            13                             171
  CLUS_3                            20                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(12P13.32) MUTATED       22     26      7     13
  AMP PEAK 20(12P13.32) WILD-TYPE    105     93     98    141
D20V13, multiclass
        clus
vv       AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE
  CLUS_1                            22                             105
  CLUS_2                            26                              93
  CLUS_3                             7                              98
  CLUS_4                            13                             141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(12P13.32) MUTATED       19     21      4      3      7     14
  AMP PEAK 20(12P13.32) WILD-TYPE     80     56    114     53     56     78
D20V14, multiclass
        clus
vv       AMP PEAK 20(12P13.32) MUTATED AMP PEAK 20(12P13.32) WILD-TYPE
  CLUS_1                            19                              80
  CLUS_2                            21                              56
  CLUS_3                             4                             114
  CLUS_4                             3                              53
  CLUS_5                             7                              56
  CLUS_6                            14                              78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(12Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(12Q14.1) MUTATED       33     27     27     36
  AMP PEAK 21(12Q14.1) WILD-TYPE    125     69    110     81
D21V1, multiclass
        clus
vv       AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE
  CLUS_1                           33                            125
  CLUS_2                           27                             69
  CLUS_3                           27                            110
  CLUS_4                           36                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(12Q14.1) MUTATED       31     32     19     41
  AMP PEAK 21(12Q14.1) WILD-TYPE    117     70     81    117
D21V2, multiclass
        clus
vv       AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE
  CLUS_1                           31                            117
  CLUS_2                           32                             70
  CLUS_3                           19                             81
  CLUS_4                           41                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(12Q14.1) MUTATED       25     60     18     26
  AMP PEAK 21(12Q14.1) WILD-TYPE    118    127     72    100
D21V3, multiclass
        clus
vv       AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE
  CLUS_1                           25                            118
  CLUS_2                           60                            127
  CLUS_3                           18                             72
  CLUS_4                           26                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(12Q14.1) MUTATED       63     26     40
  AMP PEAK 21(12Q14.1) WILD-TYPE    230     98     89
D21V4, multiclass
        clus
vv       AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE
  CLUS_1                           63                            230
  CLUS_2                           26                             98
  CLUS_3                           40                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(12Q14.1) MUTATED      135     28      8
  AMP PEAK 21(12Q14.1) WILD-TYPE    394    442     83
D21V5, multiclass
        clus
vv       AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE
  CLUS_1                          135                            394
  CLUS_2                           28                            442
  CLUS_3                            8                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(12Q14.1) MUTATED       42     16      3      5
  AMP PEAK 21(12Q14.1) WILD-TYPE    135    209     85    155
D21V6, multiclass
        clus
vv       AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE
  CLUS_1                           42                            135
  CLUS_2                           16                            209
  CLUS_3                            3                             85
  CLUS_4                            5                            155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(12Q14.1) MUTATED       19     19     26     10
  AMP PEAK 21(12Q14.1) WILD-TYPE    194    149    130     99
D21V7, multiclass
        clus
vv       AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE
  CLUS_1                           19                            194
  CLUS_2                           19                            149
  CLUS_3                           26                            130
  CLUS_4                           10                             99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(12Q14.1) MUTATED       28     29     17
  AMP PEAK 21(12Q14.1) WILD-TYPE    206    225    141
D21V8, multiclass
        clus
vv       AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE
  CLUS_1                           28                            206
  CLUS_2                           29                            225
  CLUS_3                           17                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(12Q14.1) MUTATED       67      4      8
  AMP PEAK 21(12Q14.1) WILD-TYPE    177    185    219
D21V9, multiclass
        clus
vv       AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE
  CLUS_1                           67                            177
  CLUS_2                            4                            185
  CLUS_3                            8                            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(12Q14.1) MUTATED       58     13      8
  AMP PEAK 21(12Q14.1) WILD-TYPE    145    177    259
D21V10, multiclass
        clus
vv       AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE
  CLUS_1                           58                            145
  CLUS_2                           13                            177
  CLUS_3                            8                            259
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(12Q14.1) MUTATED       13     15      3      6
  AMP PEAK 21(12Q14.1) WILD-TYPE    127     92     79    174
D21V11, multiclass
        clus
vv       AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE
  CLUS_1                           13                            127
  CLUS_2                           15                             92
  CLUS_3                            3                             79
  CLUS_4                            6                            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(12Q14.1) MUTATED       10      5     22
  AMP PEAK 21(12Q14.1) WILD-TYPE    212    179     81
D21V12, multiclass
        clus
vv       AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE
  CLUS_1                           10                            212
  CLUS_2                            5                            179
  CLUS_3                           22                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(12Q14.1) MUTATED        9     21      1      6
  AMP PEAK 21(12Q14.1) WILD-TYPE    118     98    104    148
D21V13, multiclass
        clus
vv       AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE
  CLUS_1                            9                            118
  CLUS_2                           21                             98
  CLUS_3                            1                            104
  CLUS_4                            6                            148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(12Q14.1) MUTATED        6      6      2      2     15      6
  AMP PEAK 21(12Q14.1) WILD-TYPE     93     71    116     54     48     86
D21V14, multiclass
        clus
vv       AMP PEAK 21(12Q14.1) MUTATED AMP PEAK 21(12Q14.1) WILD-TYPE
  CLUS_1                            6                             93
  CLUS_2                            6                             71
  CLUS_3                            2                            116
  CLUS_4                            2                             54
  CLUS_5                           15                             48
  CLUS_6                            6                             86
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(12Q15) MUTATED       26     19     19     18
  AMP PEAK 22(12Q15) WILD-TYPE    132     77    118     99
D22V1, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         26                          132
  CLUS_2                         19                           77
  CLUS_3                         19                          118
  CLUS_4                         18                           99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(12Q15) MUTATED       25     15     11     31
  AMP PEAK 22(12Q15) WILD-TYPE    123     87     89    127
D22V2, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         25                          123
  CLUS_2                         15                           87
  CLUS_3                         11                           89
  CLUS_4                         31                          127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(12Q15) MUTATED       18     33     17     23
  AMP PEAK 22(12Q15) WILD-TYPE    125    154     73    103
D22V3, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         18                          125
  CLUS_2                         33                          154
  CLUS_3                         17                           73
  CLUS_4                         23                          103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(12Q15) MUTATED       43     21     27
  AMP PEAK 22(12Q15) WILD-TYPE    250    103    102
D22V4, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         43                          250
  CLUS_2                         21                          103
  CLUS_3                         27                          102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(12Q15) MUTATED       97     11      3
  AMP PEAK 22(12Q15) WILD-TYPE    432    459     88
D22V5, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         97                          432
  CLUS_2                         11                          459
  CLUS_3                          3                           88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(12Q15) MUTATED       28      4      2      4
  AMP PEAK 22(12Q15) WILD-TYPE    149    221     86    156
D22V6, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         28                          149
  CLUS_2                          4                          221
  CLUS_3                          2                           86
  CLUS_4                          4                          156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(12Q15) MUTATED       10     10     13      6
  AMP PEAK 22(12Q15) WILD-TYPE    203    158    143    103
D22V7, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         10                          203
  CLUS_2                         10                          158
  CLUS_3                         13                          143
  CLUS_4                          6                          103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(12Q15) MUTATED       13     18      8
  AMP PEAK 22(12Q15) WILD-TYPE    221    236    150
D22V8, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         13                          221
  CLUS_2                         18                          236
  CLUS_3                          8                          150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(12Q15) MUTATED       34      4      4
  AMP PEAK 22(12Q15) WILD-TYPE    210    185    223
D22V9, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         34                          210
  CLUS_2                          4                          185
  CLUS_3                          4                          223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(12Q15) MUTATED       34      1      7
  AMP PEAK 22(12Q15) WILD-TYPE    169    189    260
D22V10, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                         34                          169
  CLUS_2                          1                          189
  CLUS_3                          7                          260
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(12Q15) MUTATED        8      3      3      4
  AMP PEAK 22(12Q15) WILD-TYPE    132    104     79    176
D22V11, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                          8                          132
  CLUS_2                          3                          104
  CLUS_3                          3                           79
  CLUS_4                          4                          176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(12Q15) MUTATED        5      5      8
  AMP PEAK 22(12Q15) WILD-TYPE    217    179     95
D22V12, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                          5                          217
  CLUS_2                          5                          179
  CLUS_3                          8                           95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(12Q15) MUTATED        3     10      1      4
  AMP PEAK 22(12Q15) WILD-TYPE    124    109    104    150
D22V13, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                          3                          124
  CLUS_2                         10                          109
  CLUS_3                          1                          104
  CLUS_4                          4                          150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(12Q15) MUTATED        2      1      2      2      8      3
  AMP PEAK 22(12Q15) WILD-TYPE     97     76    116     54     55     89
D22V14, multiclass
        clus
vv       AMP PEAK 22(12Q15) MUTATED AMP PEAK 22(12Q15) WILD-TYPE
  CLUS_1                          2                           97
  CLUS_2                          1                           76
  CLUS_3                          2                          116
  CLUS_4                          2                           54
  CLUS_5                          8                           55
  CLUS_6                          3                           89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(13Q34) MUTATED        9     10      6      5
  AMP PEAK 23(13Q34) WILD-TYPE    149     86    131    112
D23V1, multiclass
        clus
vv       AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE
  CLUS_1                          9                          149
  CLUS_2                         10                           86
  CLUS_3                          6                          131
  CLUS_4                          5                          112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(13Q34) MUTATED        6      8      3     13
  AMP PEAK 23(13Q34) WILD-TYPE    142     94     97    145
D23V2, multiclass
        clus
vv       AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE
  CLUS_1                          6                          142
  CLUS_2                          8                           94
  CLUS_3                          3                           97
  CLUS_4                         13                          145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(13Q34) MUTATED        3     16      6      6
  AMP PEAK 23(13Q34) WILD-TYPE    140    171     84    120
D23V3, multiclass
        clus
vv       AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE
  CLUS_1                          3                          140
  CLUS_2                         16                          171
  CLUS_3                          6                           84
  CLUS_4                          6                          120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(13Q34) MUTATED       20      6      5
  AMP PEAK 23(13Q34) WILD-TYPE    273    118    124
D23V4, multiclass
        clus
vv       AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         20                          273
  CLUS_2                          6                          118
  CLUS_3                          5                          124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(13Q34) MUTATED       30     18      6
  AMP PEAK 23(13Q34) WILD-TYPE    499    452     85
D23V5, multiclass
        clus
vv       AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         30                          499
  CLUS_2                         18                          452
  CLUS_3                          6                           85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(13Q34) MUTATED        6     19      1      1
  AMP PEAK 23(13Q34) WILD-TYPE    171    206     87    159
D23V6, multiclass
        clus
vv       AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE
  CLUS_1                          6                          171
  CLUS_2                         19                          206
  CLUS_3                          1                           87
  CLUS_4                          1                          159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(13Q34) MUTATED        5      4     10      8
  AMP PEAK 23(13Q34) WILD-TYPE    208    164    146    101
D23V7, multiclass
        clus
vv       AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE
  CLUS_1                          5                          208
  CLUS_2                          4                          164
  CLUS_3                         10                          146
  CLUS_4                          8                          101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(13Q34) MUTATED       10     13      4
  AMP PEAK 23(13Q34) WILD-TYPE    224    241    154
D23V8, multiclass
        clus
vv       AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         10                          224
  CLUS_2                         13                          241
  CLUS_3                          4                          154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(13Q34) MUTATED       17      5     10
  AMP PEAK 23(13Q34) WILD-TYPE    227    184    217
D23V9, multiclass
        clus
vv       AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         17                          227
  CLUS_2                          5                          184
  CLUS_3                         10                          217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(13Q34) MUTATED       13     13      6
  AMP PEAK 23(13Q34) WILD-TYPE    190    177    261
D23V10, multiclass
        clus
vv       AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         13                          190
  CLUS_2                         13                          177
  CLUS_3                          6                          261
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(13Q34) MUTATED       11      4      1      6
  AMP PEAK 23(13Q34) WILD-TYPE    129    103     81    174
D23V11, multiclass
        clus
vv       AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         11                          129
  CLUS_2                          4                          103
  CLUS_3                          1                           81
  CLUS_4                          6                          174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(13Q34) MUTATED       11      6      5
  AMP PEAK 23(13Q34) WILD-TYPE    211    178     98
D23V12, multiclass
        clus
vv       AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         11                          211
  CLUS_2                          6                          178
  CLUS_3                          5                           98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(13Q34) MUTATED        8      7      2      5
  AMP PEAK 23(13Q34) WILD-TYPE    119    112    103    149
D23V13, multiclass
        clus
vv       AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE
  CLUS_1                          8                          119
  CLUS_2                          7                          112
  CLUS_3                          2                          103
  CLUS_4                          5                          149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(13Q34) MUTATED        9      4      4      0      3      2
  AMP PEAK 23(13Q34) WILD-TYPE     90     73    114     56     60     90
D23V14, multiclass
        clus
vv       AMP PEAK 23(13Q34) MUTATED AMP PEAK 23(13Q34) WILD-TYPE
  CLUS_1                          9                           90
  CLUS_2                          4                           73
  CLUS_3                          4                          114
  CLUS_4                          0                           56
  CLUS_5                          3                           60
  CLUS_6                          2                           90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(14Q32.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(14Q32.33) MUTATED        6      6     15      5
  AMP PEAK 24(14Q32.33) WILD-TYPE    152     90    122    112
D24V1, multiclass
        clus
vv       AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                             6                             152
  CLUS_2                             6                              90
  CLUS_3                            15                             122
  CLUS_4                             5                             112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(14Q32.33) MUTATED        9      5      9      9
  AMP PEAK 24(14Q32.33) WILD-TYPE    139     97     91    149
D24V2, multiclass
        clus
vv       AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                             9                             139
  CLUS_2                             5                              97
  CLUS_3                             9                              91
  CLUS_4                             9                             149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(14Q32.33) MUTATED       12     10     10      3
  AMP PEAK 24(14Q32.33) WILD-TYPE    131    177     80    123
D24V3, multiclass
        clus
vv       AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                            12                             131
  CLUS_2                            10                             177
  CLUS_3                            10                              80
  CLUS_4                             3                             123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(14Q32.33) MUTATED       19      7      9
  AMP PEAK 24(14Q32.33) WILD-TYPE    274    117    120
D24V4, multiclass
        clus
vv       AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                            19                             274
  CLUS_2                             7                             117
  CLUS_3                             9                             120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(14Q32.33) MUTATED       32      8      4
  AMP PEAK 24(14Q32.33) WILD-TYPE    497    462     87
D24V5, multiclass
        clus
vv       AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                            32                             497
  CLUS_2                             8                             462
  CLUS_3                             4                              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(14Q32.33) MUTATED        5      4      1      1
  AMP PEAK 24(14Q32.33) WILD-TYPE    172    221     87    159
D24V6, multiclass
        clus
vv       AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                             5                             172
  CLUS_2                             4                             221
  CLUS_3                             1                              87
  CLUS_4                             1                             159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(14Q32.33) MUTATED        3      5      4      4
  AMP PEAK 24(14Q32.33) WILD-TYPE    210    163    152    105
D24V7, multiclass
        clus
vv       AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                             3                             210
  CLUS_2                             5                             163
  CLUS_3                             4                             152
  CLUS_4                             4                             105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(14Q32.33) MUTATED        3      8      5
  AMP PEAK 24(14Q32.33) WILD-TYPE    231    246    153
D24V8, multiclass
        clus
vv       AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                             3                             231
  CLUS_2                             8                             246
  CLUS_3                             5                             153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(14Q32.33) MUTATED       13      2      3
  AMP PEAK 24(14Q32.33) WILD-TYPE    231    187    224
D24V9, multiclass
        clus
vv       AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                            13                             231
  CLUS_2                             2                             187
  CLUS_3                             3                             224
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(14Q32.33) MUTATED       11      5      2
  AMP PEAK 24(14Q32.33) WILD-TYPE    192    185    265
D24V10, multiclass
        clus
vv       AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                            11                             192
  CLUS_2                             5                             185
  CLUS_3                             2                             265
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(14Q32.33) MUTATED        2      2      1      3
  AMP PEAK 24(14Q32.33) WILD-TYPE    138    105     81    177
D24V11, multiclass
        clus
vv       AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                             2                             138
  CLUS_2                             2                             105
  CLUS_3                             1                              81
  CLUS_4                             3                             177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(14Q32.33) MUTATED        3      2      3
  AMP PEAK 24(14Q32.33) WILD-TYPE    219    182    100
D24V12, multiclass
        clus
vv       AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                             3                             219
  CLUS_2                             2                             182
  CLUS_3                             3                             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(14Q32.33) MUTATED        1      5      0      2
  AMP PEAK 24(14Q32.33) WILD-TYPE    126    114    105    152
D24V13, multiclass
        clus
vv       AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                             1                             126
  CLUS_2                             5                             114
  CLUS_3                             0                             105
  CLUS_4                             2                             152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(14Q32.33) MUTATED        0      3      0      1      1      3
  AMP PEAK 24(14Q32.33) WILD-TYPE     99     74    118     55     62     89
D24V14, multiclass
        clus
vv       AMP PEAK 24(14Q32.33) MUTATED AMP PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                             0                              99
  CLUS_2                             3                              74
  CLUS_3                             0                             118
  CLUS_4                             1                              55
  CLUS_5                             1                              62
  CLUS_6                             3                              89
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(17P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(17P13.2) MUTATED        9     13      6     19
  AMP PEAK 25(17P13.2) WILD-TYPE    149     83    131     98
D25V1, multiclass
        clus
vv       AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE
  CLUS_1                            9                            149
  CLUS_2                           13                             83
  CLUS_3                            6                            131
  CLUS_4                           19                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(17P13.2) MUTATED       10     18      5     14
  AMP PEAK 25(17P13.2) WILD-TYPE    138     84     95    144
D25V2, multiclass
        clus
vv       AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE
  CLUS_1                           10                            138
  CLUS_2                           18                             84
  CLUS_3                            5                             95
  CLUS_4                           14                            144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(17P13.2) MUTATED        5     22      8     13
  AMP PEAK 25(17P13.2) WILD-TYPE    138    165     82    113
D25V3, multiclass
        clus
vv       AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE
  CLUS_1                            5                            138
  CLUS_2                           22                            165
  CLUS_3                            8                             82
  CLUS_4                           13                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(17P13.2) MUTATED       32     10      6
  AMP PEAK 25(17P13.2) WILD-TYPE    261    114    123
D25V4, multiclass
        clus
vv       AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE
  CLUS_1                           32                            261
  CLUS_2                           10                            114
  CLUS_3                            6                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(17P13.2) MUTATED       44     27      3
  AMP PEAK 25(17P13.2) WILD-TYPE    485    443     88
D25V5, multiclass
        clus
vv       AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE
  CLUS_1                           44                            485
  CLUS_2                           27                            443
  CLUS_3                            3                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(17P13.2) MUTATED        6      8      1     13
  AMP PEAK 25(17P13.2) WILD-TYPE    171    217     87    147
D25V6, multiclass
        clus
vv       AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE
  CLUS_1                            6                            171
  CLUS_2                            8                            217
  CLUS_3                            1                             87
  CLUS_4                           13                            147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(17P13.2) MUTATED       17      2     14      6
  AMP PEAK 25(17P13.2) WILD-TYPE    196    166    142    103
D25V7, multiclass
        clus
vv       AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE
  CLUS_1                           17                            196
  CLUS_2                            2                            166
  CLUS_3                           14                            142
  CLUS_4                            6                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(17P13.2) MUTATED       17     17      5
  AMP PEAK 25(17P13.2) WILD-TYPE    217    237    153
D25V8, multiclass
        clus
vv       AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE
  CLUS_1                           17                            217
  CLUS_2                           17                            237
  CLUS_3                            5                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(17P13.2) MUTATED       15      7     11
  AMP PEAK 25(17P13.2) WILD-TYPE    229    182    216
D25V9, multiclass
        clus
vv       AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE
  CLUS_1                           15                            229
  CLUS_2                            7                            182
  CLUS_3                           11                            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(17P13.2) MUTATED       11      8     14
  AMP PEAK 25(17P13.2) WILD-TYPE    192    182    253
D25V10, multiclass
        clus
vv       AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE
  CLUS_1                           11                            192
  CLUS_2                            8                            182
  CLUS_3                           14                            253
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(17P13.2) MUTATED        4      7      6      6
  AMP PEAK 25(17P13.2) WILD-TYPE    136    100     76    174
D25V11, multiclass
        clus
vv       AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE
  CLUS_1                            4                            136
  CLUS_2                            7                            100
  CLUS_3                            6                             76
  CLUS_4                            6                            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(17P13.2) MUTATED       10     10      3
  AMP PEAK 25(17P13.2) WILD-TYPE    212    174    100
D25V12, multiclass
        clus
vv       AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE
  CLUS_1                           10                            212
  CLUS_2                           10                            174
  CLUS_3                            3                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(17P13.2) MUTATED        4      6      8      5
  AMP PEAK 25(17P13.2) WILD-TYPE    123    113     97    149
D25V13, multiclass
        clus
vv       AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE
  CLUS_1                            4                            123
  CLUS_2                            6                            113
  CLUS_3                            8                             97
  CLUS_4                            5                            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(17P13.2) MUTATED        3      4      2      8      1      5
  AMP PEAK 25(17P13.2) WILD-TYPE     96     73    116     48     62     87
D25V14, multiclass
        clus
vv       AMP PEAK 25(17P13.2) MUTATED AMP PEAK 25(17P13.2) WILD-TYPE
  CLUS_1                            3                             96
  CLUS_2                            4                             73
  CLUS_3                            2                            116
  CLUS_4                            8                             48
  CLUS_5                            1                             62
  CLUS_6                            5                             87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(17Q25.1) MUTATED       19     22     13     19
  AMP PEAK 26(17Q25.1) WILD-TYPE    139     74    124     98
D26V1, multiclass
        clus
vv       AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE
  CLUS_1                           19                            139
  CLUS_2                           22                             74
  CLUS_3                           13                            124
  CLUS_4                           19                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(17Q25.1) MUTATED       16     19     12     26
  AMP PEAK 26(17Q25.1) WILD-TYPE    132     83     88    132
D26V2, multiclass
        clus
vv       AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE
  CLUS_1                           16                            132
  CLUS_2                           19                             83
  CLUS_3                           12                             88
  CLUS_4                           26                            132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(17Q25.1) MUTATED       13     32     13     21
  AMP PEAK 26(17Q25.1) WILD-TYPE    130    155     77    105
D26V3, multiclass
        clus
vv       AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE
  CLUS_1                           13                            130
  CLUS_2                           32                            155
  CLUS_3                           13                             77
  CLUS_4                           21                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(17Q25.1) MUTATED       46     16     17
  AMP PEAK 26(17Q25.1) WILD-TYPE    247    108    112
D26V4, multiclass
        clus
vv       AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE
  CLUS_1                           46                            247
  CLUS_2                           16                            108
  CLUS_3                           17                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(17Q25.1) MUTATED       79     40      9
  AMP PEAK 26(17Q25.1) WILD-TYPE    450    430     82
D26V5, multiclass
        clus
vv       AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE
  CLUS_1                           79                            450
  CLUS_2                           40                            430
  CLUS_3                            9                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(17Q25.1) MUTATED       22     21      4     11
  AMP PEAK 26(17Q25.1) WILD-TYPE    155    204     84    149
D26V6, multiclass
        clus
vv       AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE
  CLUS_1                           22                            155
  CLUS_2                           21                            204
  CLUS_3                            4                             84
  CLUS_4                           11                            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(17Q25.1) MUTATED       20     10     17     10
  AMP PEAK 26(17Q25.1) WILD-TYPE    193    158    139     99
D26V7, multiclass
        clus
vv       AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE
  CLUS_1                           20                            193
  CLUS_2                           10                            158
  CLUS_3                           17                            139
  CLUS_4                           10                             99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(17Q25.1) MUTATED       23     23     11
  AMP PEAK 26(17Q25.1) WILD-TYPE    211    231    147
D26V8, multiclass
        clus
vv       AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE
  CLUS_1                           23                            211
  CLUS_2                           23                            231
  CLUS_3                           11                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(17Q25.1) MUTATED       33     10     21
  AMP PEAK 26(17Q25.1) WILD-TYPE    211    179    206
D26V9, multiclass
        clus
vv       AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE
  CLUS_1                           33                            211
  CLUS_2                           10                            179
  CLUS_3                           21                            206
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(17Q25.1) MUTATED       27     20     17
  AMP PEAK 26(17Q25.1) WILD-TYPE    176    170    250
D26V10, multiclass
        clus
vv       AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE
  CLUS_1                           27                            176
  CLUS_2                           20                            170
  CLUS_3                           17                            250
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(17Q25.1) MUTATED       12     14      8     10
  AMP PEAK 26(17Q25.1) WILD-TYPE    128     93     74    170
D26V11, multiclass
        clus
vv       AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE
  CLUS_1                           12                            128
  CLUS_2                           14                             93
  CLUS_3                            8                             74
  CLUS_4                           10                            170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(17Q25.1) MUTATED       20     13     11
  AMP PEAK 26(17Q25.1) WILD-TYPE    202    171     92
D26V12, multiclass
        clus
vv       AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE
  CLUS_1                           20                            202
  CLUS_2                           13                            171
  CLUS_3                           11                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(17Q25.1) MUTATED        8     17      9      9
  AMP PEAK 26(17Q25.1) WILD-TYPE    119    102     96    145
D26V13, multiclass
        clus
vv       AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE
  CLUS_1                            8                            119
  CLUS_2                           17                            102
  CLUS_3                            9                             96
  CLUS_4                            9                            145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(17Q25.1) MUTATED       10      5      5      6      7     10
  AMP PEAK 26(17Q25.1) WILD-TYPE     89     72    113     50     56     82
D26V14, multiclass
        clus
vv       AMP PEAK 26(17Q25.1) MUTATED AMP PEAK 26(17Q25.1) WILD-TYPE
  CLUS_1                           10                             89
  CLUS_2                            5                             72
  CLUS_3                            5                            113
  CLUS_4                            6                             50
  CLUS_5                            7                             56
  CLUS_6                           10                             82
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(19P13.3) MUTATED       63     35     90     29
  AMP PEAK 27(19P13.3) WILD-TYPE     95     61     47     88
D27V1, multiclass
        clus
vv       AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           63                             95
  CLUS_2                           35                             61
  CLUS_3                           90                             47
  CLUS_4                           29                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(19P13.3) MUTATED       67     31     62     57
  AMP PEAK 27(19P13.3) WILD-TYPE     81     71     38    101
D27V2, multiclass
        clus
vv       AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           67                             81
  CLUS_2                           31                             71
  CLUS_3                           62                             38
  CLUS_4                           57                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(19P13.3) MUTATED       59     89     27     57
  AMP PEAK 27(19P13.3) WILD-TYPE     84     98     63     69
D27V3, multiclass
        clus
vv       AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           59                             84
  CLUS_2                           89                             98
  CLUS_3                           27                             63
  CLUS_4                           57                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19P13.3) MUTATED      108     53     71
  AMP PEAK 27(19P13.3) WILD-TYPE    185     71     58
D27V4, multiclass
        clus
vv       AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                          108                            185
  CLUS_2                           53                             71
  CLUS_3                           71                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19P13.3) MUTATED      245    109     21
  AMP PEAK 27(19P13.3) WILD-TYPE    284    361     70
D27V5, multiclass
        clus
vv       AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                          245                            284
  CLUS_2                          109                            361
  CLUS_3                           21                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(19P13.3) MUTATED       76     21      6     80
  AMP PEAK 27(19P13.3) WILD-TYPE    101    204     82     80
D27V6, multiclass
        clus
vv       AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           76                            101
  CLUS_2                           21                            204
  CLUS_3                            6                             82
  CLUS_4                           80                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(19P13.3) MUTATED       73     40     55     29
  AMP PEAK 27(19P13.3) WILD-TYPE    140    128    101     80
D27V7, multiclass
        clus
vv       AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           73                            140
  CLUS_2                           40                            128
  CLUS_3                           55                            101
  CLUS_4                           29                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19P13.3) MUTATED       69     91     37
  AMP PEAK 27(19P13.3) WILD-TYPE    165    163    121
D27V8, multiclass
        clus
vv       AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           69                            165
  CLUS_2                           91                            163
  CLUS_3                           37                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19P13.3) MUTATED       84     53     48
  AMP PEAK 27(19P13.3) WILD-TYPE    160    136    179
D27V9, multiclass
        clus
vv       AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           84                            160
  CLUS_2                           53                            136
  CLUS_3                           48                            179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19P13.3) MUTATED       77     19     89
  AMP PEAK 27(19P13.3) WILD-TYPE    126    171    178
D27V10, multiclass
        clus
vv       AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           77                            126
  CLUS_2                           19                            171
  CLUS_3                           89                            178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(19P13.3) MUTATED       26     23     36     44
  AMP PEAK 27(19P13.3) WILD-TYPE    114     84     46    136
D27V11, multiclass
        clus
vv       AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           26                            114
  CLUS_2                           23                             84
  CLUS_3                           36                             46
  CLUS_4                           44                            136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19P13.3) MUTATED       47     52     30
  AMP PEAK 27(19P13.3) WILD-TYPE    175    132     73
D27V12, multiclass
        clus
vv       AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           47                            175
  CLUS_2                           52                            132
  CLUS_3                           30                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(19P13.3) MUTATED       19     27     46     37
  AMP PEAK 27(19P13.3) WILD-TYPE    108     92     59    117
D27V13, multiclass
        clus
vv       AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           19                            108
  CLUS_2                           27                             92
  CLUS_3                           46                             59
  CLUS_4                           37                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19P13.3) MUTATED       12     15     30     27     23     22
  AMP PEAK 27(19P13.3) WILD-TYPE     87     62     88     29     40     70
D27V14, multiclass
        clus
vv       AMP PEAK 27(19P13.3) MUTATED AMP PEAK 27(19P13.3) WILD-TYPE
  CLUS_1                           12                             87
  CLUS_2                           15                             62
  CLUS_3                           30                             88
  CLUS_4                           27                             29
  CLUS_5                           23                             40
  CLUS_6                           22                             70
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(19Q12) MUTATED       60     31     79     18
  AMP PEAK 28(19Q12) WILD-TYPE     98     65     58     99
D28V1, multiclass
        clus
vv       AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE
  CLUS_1                         60                           98
  CLUS_2                         31                           65
  CLUS_3                         79                           58
  CLUS_4                         18                           99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(19Q12) MUTATED       62     21     54     51
  AMP PEAK 28(19Q12) WILD-TYPE     86     81     46    107
D28V2, multiclass
        clus
vv       AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE
  CLUS_1                         62                           86
  CLUS_2                         21                           81
  CLUS_3                         54                           46
  CLUS_4                         51                          107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(19Q12) MUTATED       55     70     26     50
  AMP PEAK 28(19Q12) WILD-TYPE     88    117     64     76
D28V3, multiclass
        clus
vv       AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE
  CLUS_1                         55                           88
  CLUS_2                         70                          117
  CLUS_3                         26                           64
  CLUS_4                         50                           76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(19Q12) MUTATED       91     49     61
  AMP PEAK 28(19Q12) WILD-TYPE    202     75     68
D28V4, multiclass
        clus
vv       AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE
  CLUS_1                         91                          202
  CLUS_2                         49                           75
  CLUS_3                         61                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(19Q12) MUTATED      212     14     21
  AMP PEAK 28(19Q12) WILD-TYPE    317    456     70
D28V5, multiclass
        clus
vv       AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE
  CLUS_1                        212                          317
  CLUS_2                         14                          456
  CLUS_3                         21                           70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(19Q12) MUTATED       62      8      6      0
  AMP PEAK 28(19Q12) WILD-TYPE    115    217     82    160
D28V6, multiclass
        clus
vv       AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE
  CLUS_1                         62                          115
  CLUS_2                          8                          217
  CLUS_3                          6                           82
  CLUS_4                          0                          160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(19Q12) MUTATED       39     16     30     20
  AMP PEAK 28(19Q12) WILD-TYPE    174    152    126     89
D28V7, multiclass
        clus
vv       AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE
  CLUS_1                         39                          174
  CLUS_2                         16                          152
  CLUS_3                         30                          126
  CLUS_4                         20                           89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(19Q12) MUTATED       40     53     12
  AMP PEAK 28(19Q12) WILD-TYPE    194    201    146
D28V8, multiclass
        clus
vv       AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE
  CLUS_1                         40                          194
  CLUS_2                         53                          201
  CLUS_3                         12                          146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(19Q12) MUTATED       74      5      2
  AMP PEAK 28(19Q12) WILD-TYPE    170    184    225
D28V9, multiclass
        clus
vv       AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE
  CLUS_1                         74                          170
  CLUS_2                          5                          184
  CLUS_3                          2                          225
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(19Q12) MUTATED       69      7      5
  AMP PEAK 28(19Q12) WILD-TYPE    134    183    262
D28V10, multiclass
        clus
vv       AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE
  CLUS_1                         69                          134
  CLUS_2                          7                          183
  CLUS_3                          5                          262
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(19Q12) MUTATED       10     15      0      6
  AMP PEAK 28(19Q12) WILD-TYPE    130     92     82    174
D28V11, multiclass
        clus
vv       AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE
  CLUS_1                         10                          130
  CLUS_2                         15                           92
  CLUS_3                          0                           82
  CLUS_4                          6                          174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(19Q12) MUTATED        6      2     23
  AMP PEAK 28(19Q12) WILD-TYPE    216    182     80
D28V12, multiclass
        clus
vv       AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE
  CLUS_1                          6                          216
  CLUS_2                          2                          182
  CLUS_3                         23                           80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(19Q12) MUTATED        9     18      0      4
  AMP PEAK 28(19Q12) WILD-TYPE    118    101    105    150
D28V13, multiclass
        clus
vv       AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE
  CLUS_1                          9                          118
  CLUS_2                         18                          101
  CLUS_3                          0                          105
  CLUS_4                          4                          150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(19Q12) MUTATED        3      4      4      0     20      0
  AMP PEAK 28(19Q12) WILD-TYPE     96     73    114     56     43     92
D28V14, multiclass
        clus
vv       AMP PEAK 28(19Q12) MUTATED AMP PEAK 28(19Q12) WILD-TYPE
  CLUS_1                          3                           96
  CLUS_2                          4                           73
  CLUS_3                          4                          114
  CLUS_4                          0                           56
  CLUS_5                         20                           43
  CLUS_6                          0                           92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(19Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(19Q13.2) MUTATED       57     28     72     14
  AMP PEAK 29(19Q13.2) WILD-TYPE    101     68     65    103
D29V1, multiclass
        clus
vv       AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE
  CLUS_1                           57                            101
  CLUS_2                           28                             68
  CLUS_3                           72                             65
  CLUS_4                           14                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(19Q13.2) MUTATED       62     18     49     42
  AMP PEAK 29(19Q13.2) WILD-TYPE     86     84     51    116
D29V2, multiclass
        clus
vv       AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE
  CLUS_1                           62                             86
  CLUS_2                           18                             84
  CLUS_3                           49                             51
  CLUS_4                           42                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(19Q13.2) MUTATED       52     63     22     49
  AMP PEAK 29(19Q13.2) WILD-TYPE     91    124     68     77
D29V3, multiclass
        clus
vv       AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE
  CLUS_1                           52                             91
  CLUS_2                           63                            124
  CLUS_3                           22                             68
  CLUS_4                           49                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(19Q13.2) MUTATED       83     47     56
  AMP PEAK 29(19Q13.2) WILD-TYPE    210     77     73
D29V4, multiclass
        clus
vv       AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE
  CLUS_1                           83                            210
  CLUS_2                           47                             77
  CLUS_3                           56                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(19Q13.2) MUTATED      199     10     22
  AMP PEAK 29(19Q13.2) WILD-TYPE    330    460     69
D29V5, multiclass
        clus
vv       AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE
  CLUS_1                          199                            330
  CLUS_2                           10                            460
  CLUS_3                           22                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(19Q13.2) MUTATED       62      5      8      0
  AMP PEAK 29(19Q13.2) WILD-TYPE    115    220     80    160
D29V6, multiclass
        clus
vv       AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE
  CLUS_1                           62                            115
  CLUS_2                            5                            220
  CLUS_3                            8                             80
  CLUS_4                            0                            160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(19Q13.2) MUTATED       33     12     25     20
  AMP PEAK 29(19Q13.2) WILD-TYPE    180    156    131     89
D29V7, multiclass
        clus
vv       AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE
  CLUS_1                           33                            180
  CLUS_2                           12                            156
  CLUS_3                           25                            131
  CLUS_4                           20                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(19Q13.2) MUTATED       32     48     10
  AMP PEAK 29(19Q13.2) WILD-TYPE    202    206    148
D29V8, multiclass
        clus
vv       AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE
  CLUS_1                           32                            202
  CLUS_2                           48                            206
  CLUS_3                           10                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(19Q13.2) MUTATED       67      5      3
  AMP PEAK 29(19Q13.2) WILD-TYPE    177    184    224
D29V9, multiclass
        clus
vv       AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE
  CLUS_1                           67                            177
  CLUS_2                            5                            184
  CLUS_3                            3                            224
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(19Q13.2) MUTATED       63      7      5
  AMP PEAK 29(19Q13.2) WILD-TYPE    140    183    262
D29V10, multiclass
        clus
vv       AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE
  CLUS_1                           63                            140
  CLUS_2                            7                            183
  CLUS_3                            5                            262
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(19Q13.2) MUTATED       13     13      0      5
  AMP PEAK 29(19Q13.2) WILD-TYPE    127     94     82    175
D29V11, multiclass
        clus
vv       AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE
  CLUS_1                           13                            127
  CLUS_2                           13                             94
  CLUS_3                            0                             82
  CLUS_4                            5                            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(19Q13.2) MUTATED        7      1     23
  AMP PEAK 29(19Q13.2) WILD-TYPE    215    183     80
D29V12, multiclass
        clus
vv       AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE
  CLUS_1                            7                            215
  CLUS_2                            1                            183
  CLUS_3                           23                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(19Q13.2) MUTATED       10     18      0      3
  AMP PEAK 29(19Q13.2) WILD-TYPE    117    101    105    151
D29V13, multiclass
        clus
vv       AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE
  CLUS_1                           10                            117
  CLUS_2                           18                            101
  CLUS_3                            0                            105
  CLUS_4                            3                            151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(19Q13.2) MUTATED        5      2      4      0     20      0
  AMP PEAK 29(19Q13.2) WILD-TYPE     94     75    114     56     43     92
D29V14, multiclass
        clus
vv       AMP PEAK 29(19Q13.2) MUTATED AMP PEAK 29(19Q13.2) WILD-TYPE
  CLUS_1                            5                             94
  CLUS_2                            2                             75
  CLUS_3                            4                            114
  CLUS_4                            0                             56
  CLUS_5                           20                             43
  CLUS_6                            0                             92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = AMP PEAK 30(XP11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(XP11.21) MUTATED        6     11      7      6
  AMP PEAK 30(XP11.21) WILD-TYPE    152     85    130    111
D30V1, multiclass
        clus
vv       AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE
  CLUS_1                            6                            152
  CLUS_2                           11                             85
  CLUS_3                            7                            130
  CLUS_4                            6                            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(XP11.21) MUTATED       10      7      6      7
  AMP PEAK 30(XP11.21) WILD-TYPE    138     95     94    151
D30V2, multiclass
        clus
vv       AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE
  CLUS_1                           10                            138
  CLUS_2                            7                             95
  CLUS_3                            6                             94
  CLUS_4                            7                            151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(XP11.21) MUTATED        7     13      8      5
  AMP PEAK 30(XP11.21) WILD-TYPE    136    174     82    121
D30V3, multiclass
        clus
vv       AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE
  CLUS_1                            7                            136
  CLUS_2                           13                            174
  CLUS_3                            8                             82
  CLUS_4                            5                            121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(XP11.21) MUTATED       18      8      7
  AMP PEAK 30(XP11.21) WILD-TYPE    275    116    122
D30V4, multiclass
        clus
vv       AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE
  CLUS_1                           18                            275
  CLUS_2                            8                            116
  CLUS_3                            7                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(XP11.21) MUTATED       31     61     12
  AMP PEAK 30(XP11.21) WILD-TYPE    498    409     79
D30V5, multiclass
        clus
vv       AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE
  CLUS_1                           31                            498
  CLUS_2                           61                            409
  CLUS_3                           12                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(XP11.21) MUTATED        6     62      6      2
  AMP PEAK 30(XP11.21) WILD-TYPE    171    163     82    158
D30V6, multiclass
        clus
vv       AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE
  CLUS_1                            6                            171
  CLUS_2                           62                            163
  CLUS_3                            6                             82
  CLUS_4                            2                            158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(XP11.21) MUTATED       25     12     17     16
  AMP PEAK 30(XP11.21) WILD-TYPE    188    156    139     93
D30V7, multiclass
        clus
vv       AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE
  CLUS_1                           25                            188
  CLUS_2                           12                            156
  CLUS_3                           17                            139
  CLUS_4                           16                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(XP11.21) MUTATED       34     25     11
  AMP PEAK 30(XP11.21) WILD-TYPE    200    229    147
D30V8, multiclass
        clus
vv       AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE
  CLUS_1                           34                            200
  CLUS_2                           25                            229
  CLUS_3                           11                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(XP11.21) MUTATED       23     19     35
  AMP PEAK 30(XP11.21) WILD-TYPE    221    170    192
D30V9, multiclass
        clus
vv       AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE
  CLUS_1                           23                            221
  CLUS_2                           19                            170
  CLUS_3                           35                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(XP11.21) MUTATED        9     49     19
  AMP PEAK 30(XP11.21) WILD-TYPE    194    141    248
D30V10, multiclass
        clus
vv       AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE
  CLUS_1                            9                            194
  CLUS_2                           49                            141
  CLUS_3                           19                            248
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(XP11.21) MUTATED       26     21      1     21
  AMP PEAK 30(XP11.21) WILD-TYPE    114     86     81    159
D30V11, multiclass
        clus
vv       AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE
  CLUS_1                           26                            114
  CLUS_2                           21                             86
  CLUS_3                            1                             81
  CLUS_4                           21                            159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(XP11.21) MUTATED       34     19     16
  AMP PEAK 30(XP11.21) WILD-TYPE    188    165     87
D30V12, multiclass
        clus
vv       AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE
  CLUS_1                           34                            188
  CLUS_2                           19                            165
  CLUS_3                           16                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(XP11.21) MUTATED       27     23      3     16
  AMP PEAK 30(XP11.21) WILD-TYPE    100     96    102    138
D30V13, multiclass
        clus
vv       AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE
  CLUS_1                           27                            100
  CLUS_2                           23                             96
  CLUS_3                            3                            102
  CLUS_4                           16                            138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(XP11.21) MUTATED       25     16     11      0      4     13
  AMP PEAK 30(XP11.21) WILD-TYPE     74     61    107     56     59     79
D30V14, multiclass
        clus
vv       AMP PEAK 30(XP11.21) MUTATED AMP PEAK 30(XP11.21) WILD-TYPE
  CLUS_1                           25                             74
  CLUS_2                           16                             61
  CLUS_3                           11                            107
  CLUS_4                            0                             56
  CLUS_5                            4                             59
  CLUS_6                           13                             79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       28     21     31     23
  DEL PEAK  1(1P36.32) WILD-TYPE    130     75    106     94
D31V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           28                            130
  CLUS_2                           21                             75
  CLUS_3                           31                            106
  CLUS_4                           23                             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       27     24     22     30
  DEL PEAK  1(1P36.32) WILD-TYPE    121     78     78    128
D31V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           27                            121
  CLUS_2                           24                             78
  CLUS_3                           22                             78
  CLUS_4                           30                            128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       24     41     19     26
  DEL PEAK  1(1P36.32) WILD-TYPE    119    146     71    100
D31V3, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           24                            119
  CLUS_2                           41                            146
  CLUS_3                           19                             71
  CLUS_4                           26                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       61     19     30
  DEL PEAK  1(1P36.32) WILD-TYPE    232    105     99
D31V4, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           61                            232
  CLUS_2                           19                            105
  CLUS_3                           30                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED      113    201      4
  DEL PEAK  1(1P36.32) WILD-TYPE    416    269     87
D31V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                          113                            416
  CLUS_2                          201                            269
  CLUS_3                            4                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       36     10     27    158
  DEL PEAK  1(1P36.32) WILD-TYPE    141    215     61      2
D31V6, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           36                            141
  CLUS_2                           10                            215
  CLUS_3                           27                             61
  CLUS_4                          158                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       63     74     55     27
  DEL PEAK  1(1P36.32) WILD-TYPE    150     94    101     82
D31V7, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           63                            150
  CLUS_2                           74                             94
  CLUS_3                           55                            101
  CLUS_4                           27                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       69     76     74
  DEL PEAK  1(1P36.32) WILD-TYPE    165    178     84
D31V8, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           69                            165
  CLUS_2                           76                            178
  CLUS_3                           74                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       39    103     86
  DEL PEAK  1(1P36.32) WILD-TYPE    205     86    141
D31V9, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           39                            205
  CLUS_2                          103                             86
  CLUS_3                           86                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       34     16    178
  DEL PEAK  1(1P36.32) WILD-TYPE    169    174     89
D31V10, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           34                            169
  CLUS_2                           16                            174
  CLUS_3                          178                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       35     12     69     90
  DEL PEAK  1(1P36.32) WILD-TYPE    105     95     13     90
D31V11, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           35                            105
  CLUS_2                           12                             95
  CLUS_3                           69                             13
  CLUS_4                           90                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       84    101     21
  DEL PEAK  1(1P36.32) WILD-TYPE    138     83     82
D31V12, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           84                            138
  CLUS_2                          101                             83
  CLUS_3                           21                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       23     23     84     76
  DEL PEAK  1(1P36.32) WILD-TYPE    104     96     21     78
D31V13, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           23                            104
  CLUS_2                           23                             96
  CLUS_3                           84                             21
  CLUS_4                           76                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        7     26     63     55     16     39
  DEL PEAK  1(1P36.32) WILD-TYPE     92     51     55      1     47     53
D31V14, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            7                             92
  CLUS_2                           26                             51
  CLUS_3                           63                             55
  CLUS_4                           55                              1
  CLUS_5                           16                             47
  CLUS_6                           39                             53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  2(1P36.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.23) MUTATED       36     14     44     27
  DEL PEAK  2(1P36.23) WILD-TYPE    122     82     93     90
D32V1, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           36                            122
  CLUS_2                           14                             82
  CLUS_3                           44                             93
  CLUS_4                           27                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.23) MUTATED       35     17     28     41
  DEL PEAK  2(1P36.23) WILD-TYPE    113     85     72    117
D32V2, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           35                            113
  CLUS_2                           17                             85
  CLUS_3                           28                             72
  CLUS_4                           41                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.23) MUTATED       34     41     21     34
  DEL PEAK  2(1P36.23) WILD-TYPE    109    146     69     92
D32V3, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           34                            109
  CLUS_2                           41                            146
  CLUS_3                           21                             69
  CLUS_4                           34                             92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED       65     32     33
  DEL PEAK  2(1P36.23) WILD-TYPE    228     92     96
D32V4, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           65                            228
  CLUS_2                           32                             92
  CLUS_3                           33                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED      149    195      3
  DEL PEAK  2(1P36.23) WILD-TYPE    380    275     88
D32V5, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                          149                            380
  CLUS_2                          195                            275
  CLUS_3                            3                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.23) MUTATED       50     11     27    158
  DEL PEAK  2(1P36.23) WILD-TYPE    127    214     61      2
D32V6, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           50                            127
  CLUS_2                           11                            214
  CLUS_3                           27                             61
  CLUS_4                          158                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.23) MUTATED       73     77     58     32
  DEL PEAK  2(1P36.23) WILD-TYPE    140     91     98     77
D32V7, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           73                            140
  CLUS_2                           77                             91
  CLUS_3                           58                             98
  CLUS_4                           32                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED       80     85     75
  DEL PEAK  2(1P36.23) WILD-TYPE    154    169     83
D32V8, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           80                            154
  CLUS_2                           85                            169
  CLUS_3                           75                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED       54    106     87
  DEL PEAK  2(1P36.23) WILD-TYPE    190     83    140
D32V9, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           54                            190
  CLUS_2                          106                             83
  CLUS_3                           87                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED       49     17    181
  DEL PEAK  2(1P36.23) WILD-TYPE    154    173     86
D32V10, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           49                            154
  CLUS_2                           17                            173
  CLUS_3                          181                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.23) MUTATED       37     14     69     92
  DEL PEAK  2(1P36.23) WILD-TYPE    103     93     13     88
D32V11, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           37                            103
  CLUS_2                           14                             93
  CLUS_3                           69                             13
  CLUS_4                           92                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED       85    103     24
  DEL PEAK  2(1P36.23) WILD-TYPE    137     81     79
D32V12, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           85                            137
  CLUS_2                          103                             81
  CLUS_3                           24                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.23) MUTATED       24     26     84     78
  DEL PEAK  2(1P36.23) WILD-TYPE    103     93     21     76
D32V13, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           24                            103
  CLUS_2                           26                             93
  CLUS_3                           84                             21
  CLUS_4                           78                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P36.23) MUTATED        7     27     65     55     19     39
  DEL PEAK  2(1P36.23) WILD-TYPE     92     50     53      1     44     53
D32V14, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                            7                             92
  CLUS_2                           27                             50
  CLUS_3                           65                             53
  CLUS_4                           55                              1
  CLUS_5                           19                             44
  CLUS_6                           39                             53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  3(1P32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P32.3) MUTATED       21     14     11     12
  DEL PEAK  3(1P32.3) WILD-TYPE    137     82    126    105
D33V1, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          21                           137
  CLUS_2                          14                            82
  CLUS_3                          11                           126
  CLUS_4                          12                           105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P32.3) MUTATED       17     15      7     19
  DEL PEAK  3(1P32.3) WILD-TYPE    131     87     93    139
D33V2, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          17                           131
  CLUS_2                          15                            87
  CLUS_3                           7                            93
  CLUS_4                          19                           139
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P32.3) MUTATED       20     20      8     12
  DEL PEAK  3(1P32.3) WILD-TYPE    123    167     82    114
D33V3, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          20                           123
  CLUS_2                          20                           167
  CLUS_3                           8                            82
  CLUS_4                          12                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED       35      8     17
  DEL PEAK  3(1P32.3) WILD-TYPE    258    116    112
D33V4, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          35                           258
  CLUS_2                           8                           116
  CLUS_3                          17                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED       64    187      6
  DEL PEAK  3(1P32.3) WILD-TYPE    465    283     85
D33V5, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          64                           465
  CLUS_2                         187                           283
  CLUS_3                           6                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P32.3) MUTATED       22      4     24    158
  DEL PEAK  3(1P32.3) WILD-TYPE    155    221     64      2
D33V6, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          22                           155
  CLUS_2                           4                           221
  CLUS_3                          24                            64
  CLUS_4                         158                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P32.3) MUTATED       56     67     39     26
  DEL PEAK  3(1P32.3) WILD-TYPE    157    101    117     83
D33V7, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          56                           157
  CLUS_2                          67                           101
  CLUS_3                          39                           117
  CLUS_4                          26                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED       59     60     69
  DEL PEAK  3(1P32.3) WILD-TYPE    175    194     89
D33V8, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          59                           175
  CLUS_2                          60                           194
  CLUS_3                          69                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED       37     98     84
  DEL PEAK  3(1P32.3) WILD-TYPE    207     91    143
D33V9, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          37                           207
  CLUS_2                          98                            91
  CLUS_3                          84                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED       33     13    173
  DEL PEAK  3(1P32.3) WILD-TYPE    170    177     94
D33V10, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          33                           170
  CLUS_2                          13                           177
  CLUS_3                         173                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P32.3) MUTATED       35      9     68     84
  DEL PEAK  3(1P32.3) WILD-TYPE    105     98     14     96
D33V11, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          35                           105
  CLUS_2                           9                            98
  CLUS_3                          68                            14
  CLUS_4                          84                            96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED       82     96     18
  DEL PEAK  3(1P32.3) WILD-TYPE    140     88     85
D33V12, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          82                           140
  CLUS_2                          96                            88
  CLUS_3                          18                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P32.3) MUTATED       20     22     83     71
  DEL PEAK  3(1P32.3) WILD-TYPE    107     97     22     83
D33V13, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          20                           107
  CLUS_2                          22                            97
  CLUS_3                          83                            22
  CLUS_4                          71                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P32.3) MUTATED        7     25     61     55     12     36
  DEL PEAK  3(1P32.3) WILD-TYPE     92     52     57      1     51     56
D33V14, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                           7                            92
  CLUS_2                          25                            52
  CLUS_3                          61                            57
  CLUS_4                          55                             1
  CLUS_5                          12                            51
  CLUS_6                          36                            56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  4(1P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1P22.1) MUTATED       13      9     11      9
  DEL PEAK  4(1P22.1) WILD-TYPE    145     87    126    108
D34V1, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          13                           145
  CLUS_2                           9                            87
  CLUS_3                          11                           126
  CLUS_4                           9                           108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1P22.1) MUTATED       15      7     10     10
  DEL PEAK  4(1P22.1) WILD-TYPE    133     95     90    148
D34V2, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          15                           133
  CLUS_2                           7                            95
  CLUS_3                          10                            90
  CLUS_4                          10                           148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1P22.1) MUTATED       12     17      7      9
  DEL PEAK  4(1P22.1) WILD-TYPE    131    170     83    117
D34V3, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          12                           131
  CLUS_2                          17                           170
  CLUS_3                           7                            83
  CLUS_4                           9                           117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED       25      3     17
  DEL PEAK  4(1P22.1) WILD-TYPE    268    121    112
D34V4, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          25                           268
  CLUS_2                           3                           121
  CLUS_3                          17                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED       47    187      0
  DEL PEAK  4(1P22.1) WILD-TYPE    482    283     91
D34V5, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          47                           482
  CLUS_2                         187                           283
  CLUS_3                           0                            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1P22.1) MUTATED       12      6     20    158
  DEL PEAK  4(1P22.1) WILD-TYPE    165    219     68      2
D34V6, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          12                           165
  CLUS_2                           6                           219
  CLUS_3                          20                            68
  CLUS_4                         158                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1P22.1) MUTATED       57     63     39     21
  DEL PEAK  4(1P22.1) WILD-TYPE    156    105    117     88
D34V7, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          57                           156
  CLUS_2                          63                           105
  CLUS_3                          39                           117
  CLUS_4                          21                            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED       56     58     66
  DEL PEAK  4(1P22.1) WILD-TYPE    178    196     92
D34V8, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          56                           178
  CLUS_2                          58                           196
  CLUS_3                          66                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED       15     98     83
  DEL PEAK  4(1P22.1) WILD-TYPE    229     91    144
D34V9, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          15                           229
  CLUS_2                          98                            91
  CLUS_3                          83                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED       11     11    174
  DEL PEAK  4(1P22.1) WILD-TYPE    192    179     93
D34V10, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          11                           192
  CLUS_2                          11                           179
  CLUS_3                         174                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1P22.1) MUTATED       27      8     68     83
  DEL PEAK  4(1P22.1) WILD-TYPE    113     99     14     97
D34V11, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          27                           113
  CLUS_2                           8                            99
  CLUS_3                          68                            14
  CLUS_4                          83                            97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED       81     98      7
  DEL PEAK  4(1P22.1) WILD-TYPE    141     86     96
D34V12, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          81                           141
  CLUS_2                          98                            86
  CLUS_3                           7                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1P22.1) MUTATED       16     18     83     69
  DEL PEAK  4(1P22.1) WILD-TYPE    111    101     22     85
D34V13, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          16                           111
  CLUS_2                          18                           101
  CLUS_3                          83                            22
  CLUS_4                          69                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(1P22.1) MUTATED        7     26     60     55      3     35
  DEL PEAK  4(1P22.1) WILD-TYPE     92     51     58      1     60     57
D34V14, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           7                            92
  CLUS_2                          26                            51
  CLUS_3                          60                            58
  CLUS_4                          55                             1
  CLUS_5                           3                            60
  CLUS_6                          35                            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  5(1Q42.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(1Q42.11) MUTATED       18      4     10     10
  DEL PEAK  5(1Q42.11) WILD-TYPE    140     92    127    107
D35V1, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           18                            140
  CLUS_2                            4                             92
  CLUS_3                           10                            127
  CLUS_4                           10                            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(1Q42.11) MUTATED       15      8      7     12
  DEL PEAK  5(1Q42.11) WILD-TYPE    133     94     93    146
D35V2, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           15                            133
  CLUS_2                            8                             94
  CLUS_3                            7                             93
  CLUS_4                           12                            146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(1Q42.11) MUTATED       15     13      6     14
  DEL PEAK  5(1Q42.11) WILD-TYPE    128    174     84    112
D35V3, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           15                            128
  CLUS_2                           13                            174
  CLUS_3                            6                             84
  CLUS_4                           14                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED       21     12     15
  DEL PEAK  5(1Q42.11) WILD-TYPE    272    112    114
D35V4, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           21                            272
  CLUS_2                           12                            112
  CLUS_3                           15                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED       52     21      7
  DEL PEAK  5(1Q42.11) WILD-TYPE    477    449     84
D35V5, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           52                            477
  CLUS_2                           21                            449
  CLUS_3                            7                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(1Q42.11) MUTATED       18     18      8      1
  DEL PEAK  5(1Q42.11) WILD-TYPE    159    207     80    159
D35V6, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           18                            159
  CLUS_2                           18                            207
  CLUS_3                            8                             80
  CLUS_4                            1                            159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(1Q42.11) MUTATED       13     12     13     11
  DEL PEAK  5(1Q42.11) WILD-TYPE    200    156    143     98
D35V7, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           13                            200
  CLUS_2                           12                            156
  CLUS_3                           13                            143
  CLUS_4                           11                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED       25     13     11
  DEL PEAK  5(1Q42.11) WILD-TYPE    209    241    147
D35V8, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           25                            209
  CLUS_2                           13                            241
  CLUS_3                           11                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED       20      8     13
  DEL PEAK  5(1Q42.11) WILD-TYPE    224    181    214
D35V9, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           20                            224
  CLUS_2                            8                            181
  CLUS_3                           13                            214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED       15     17      9
  DEL PEAK  5(1Q42.11) WILD-TYPE    188    173    258
D35V10, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           15                            188
  CLUS_2                           17                            173
  CLUS_3                            9                            258
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(1Q42.11) MUTATED        6     13      1      9
  DEL PEAK  5(1Q42.11) WILD-TYPE    134     94     81    171
D35V11, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                            6                            134
  CLUS_2                           13                             94
  CLUS_3                            1                             81
  CLUS_4                            9                            171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED       12      7     10
  DEL PEAK  5(1Q42.11) WILD-TYPE    210    177     93
D35V12, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           12                            210
  CLUS_2                            7                            177
  CLUS_3                           10                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(1Q42.11) MUTATED        9     12      2      6
  DEL PEAK  5(1Q42.11) WILD-TYPE    118    107    103    148
D35V13, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                            9                            118
  CLUS_2                           12                            107
  CLUS_3                            2                            103
  CLUS_4                            6                            148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(1Q42.11) MUTATED        6      9      6      1      6      1
  DEL PEAK  5(1Q42.11) WILD-TYPE     93     68    112     55     57     91
D35V14, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                            6                             93
  CLUS_2                            9                             68
  CLUS_3                            6                            112
  CLUS_4                            1                             55
  CLUS_5                            6                             57
  CLUS_6                            1                             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  6(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(1Q44) MUTATED        8      4      8      8
  DEL PEAK  6(1Q44) WILD-TYPE    150     92    129    109
D36V1, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         8                         150
  CLUS_2                         4                          92
  CLUS_3                         8                         129
  CLUS_4                         8                         109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(1Q44) MUTATED        7      9      5      7
  DEL PEAK  6(1Q44) WILD-TYPE    141     93     95    151
D36V2, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         7                         141
  CLUS_2                         9                          93
  CLUS_3                         5                          95
  CLUS_4                         7                         151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(1Q44) MUTATED        8     15      5      6
  DEL PEAK  6(1Q44) WILD-TYPE    135    172     85    120
D36V3, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         8                         135
  CLUS_2                        15                         172
  CLUS_3                         5                          85
  CLUS_4                         6                         120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED       15      7     12
  DEL PEAK  6(1Q44) WILD-TYPE    278    117    117
D36V4, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        15                         278
  CLUS_2                         7                         117
  CLUS_3                        12                         117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED       30     32      8
  DEL PEAK  6(1Q44) WILD-TYPE    499    438     83
D36V5, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        30                         499
  CLUS_2                        32                         438
  CLUS_3                         8                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(1Q44) MUTATED       11     27      7      2
  DEL PEAK  6(1Q44) WILD-TYPE    166    198     81    158
D36V6, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        11                         166
  CLUS_2                        27                         198
  CLUS_3                         7                          81
  CLUS_4                         2                         158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(1Q44) MUTATED       15     11     11     10
  DEL PEAK  6(1Q44) WILD-TYPE    198    157    145     99
D36V7, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        15                         198
  CLUS_2                        11                         157
  CLUS_3                        11                         145
  CLUS_4                        10                          99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED       24     13     10
  DEL PEAK  6(1Q44) WILD-TYPE    210    241    148
D36V8, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        24                         210
  CLUS_2                        13                         241
  CLUS_3                        10                         148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED       16      9     20
  DEL PEAK  6(1Q44) WILD-TYPE    228    180    207
D36V9, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        16                         228
  CLUS_2                         9                         180
  CLUS_3                        20                         207
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED       12     22     11
  DEL PEAK  6(1Q44) WILD-TYPE    191    168    256
D36V10, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        12                         191
  CLUS_2                        22                         168
  CLUS_3                        11                         256
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(1Q44) MUTATED       11     12      2      9
  DEL PEAK  6(1Q44) WILD-TYPE    129     95     80    171
D36V11, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        11                         129
  CLUS_2                        12                          95
  CLUS_3                         2                          80
  CLUS_4                         9                         171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED       17     10      7
  DEL PEAK  6(1Q44) WILD-TYPE    205    174     96
D36V12, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        17                         205
  CLUS_2                        10                         174
  CLUS_3                         7                          96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(1Q44) MUTATED       15      8      3      7
  DEL PEAK  6(1Q44) WILD-TYPE    112    111    102    147
D36V13, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        15                         112
  CLUS_2                         8                         111
  CLUS_3                         3                         102
  CLUS_4                         7                         147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(1Q44) MUTATED       10      9      6      1      3      4
  DEL PEAK  6(1Q44) WILD-TYPE     89     68    112     55     60     88
D36V14, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        10                          89
  CLUS_2                         9                          68
  CLUS_3                         6                         112
  CLUS_4                         1                          55
  CLUS_5                         3                          60
  CLUS_6                         4                          88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  7(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.1) MUTATED        9     19      6      7
  DEL PEAK  7(2Q22.1) WILD-TYPE    149     77    131    110
D37V1, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           9                           149
  CLUS_2                          19                            77
  CLUS_3                           6                           131
  CLUS_4                           7                           110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.1) MUTATED        9     16      5     11
  DEL PEAK  7(2Q22.1) WILD-TYPE    139     86     95    147
D37V2, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           9                           139
  CLUS_2                          16                            86
  CLUS_3                           5                            95
  CLUS_4                          11                           147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.1) MUTATED       10     16      9      7
  DEL PEAK  7(2Q22.1) WILD-TYPE    133    171     81    119
D37V3, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          10                           133
  CLUS_2                          16                           171
  CLUS_3                           9                            81
  CLUS_4                           7                           119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED       23      7     12
  DEL PEAK  7(2Q22.1) WILD-TYPE    270    117    117
D37V4, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          23                           270
  CLUS_2                           7                           117
  CLUS_3                          12                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED       38     22      8
  DEL PEAK  7(2Q22.1) WILD-TYPE    491    448     83
D37V5, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          38                           491
  CLUS_2                          22                           448
  CLUS_3                           8                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.1) MUTATED       15     14      4      3
  DEL PEAK  7(2Q22.1) WILD-TYPE    162    211     84    157
D37V6, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          15                           162
  CLUS_2                          14                           211
  CLUS_3                           4                            84
  CLUS_4                           3                           157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.1) MUTATED       12      5     14      4
  DEL PEAK  7(2Q22.1) WILD-TYPE    201    163    142    105
D37V7, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          12                           201
  CLUS_2                           5                           163
  CLUS_3                          14                           142
  CLUS_4                           4                           105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED       15     14      6
  DEL PEAK  7(2Q22.1) WILD-TYPE    219    240    152
D37V8, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          15                           219
  CLUS_2                          14                           240
  CLUS_3                           6                           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED       19      7      6
  DEL PEAK  7(2Q22.1) WILD-TYPE    225    182    221
D37V9, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          19                           225
  CLUS_2                           7                           182
  CLUS_3                           6                           221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED       13     12      7
  DEL PEAK  7(2Q22.1) WILD-TYPE    190    178    260
D37V10, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          13                           190
  CLUS_2                          12                           178
  CLUS_3                           7                           260
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.1) MUTATED        4      9      2      5
  DEL PEAK  7(2Q22.1) WILD-TYPE    136     98     80    175
D37V11, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           4                           136
  CLUS_2                           9                            98
  CLUS_3                           2                            80
  CLUS_4                           5                           175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED        8      7      5
  DEL PEAK  7(2Q22.1) WILD-TYPE    214    177     98
D37V12, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           8                           214
  CLUS_2                           7                           177
  CLUS_3                           5                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.1) MUTATED        4      8      2      5
  DEL PEAK  7(2Q22.1) WILD-TYPE    123    111    103    149
D37V13, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           4                           123
  CLUS_2                           8                           111
  CLUS_3                           2                           103
  CLUS_4                           5                           149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(2Q22.1) MUTATED        2      7      4      1      3      2
  DEL PEAK  7(2Q22.1) WILD-TYPE     97     70    114     55     60     90
D37V14, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           2                            97
  CLUS_2                           7                            70
  CLUS_3                           4                           114
  CLUS_4                           1                            55
  CLUS_5                           3                            60
  CLUS_6                           2                            90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  8(2Q37.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(2Q37.1) MUTATED       12     18      9     10
  DEL PEAK  8(2Q37.1) WILD-TYPE    146     78    128    107
D38V1, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          12                           146
  CLUS_2                          18                            78
  CLUS_3                           9                           128
  CLUS_4                          10                           107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(2Q37.1) MUTATED       10     20      7     12
  DEL PEAK  8(2Q37.1) WILD-TYPE    138     82     93    146
D38V2, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          10                           138
  CLUS_2                          20                            82
  CLUS_3                           7                            93
  CLUS_4                          12                           146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(2Q37.1) MUTATED       10     20     11     12
  DEL PEAK  8(2Q37.1) WILD-TYPE    133    167     79    114
D38V3, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          10                           133
  CLUS_2                          20                           167
  CLUS_3                          11                            79
  CLUS_4                          12                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED       30     10     13
  DEL PEAK  8(2Q37.1) WILD-TYPE    263    114    116
D38V4, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          30                           263
  CLUS_2                          10                           114
  CLUS_3                          13                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED       45     61     15
  DEL PEAK  8(2Q37.1) WILD-TYPE    484    409     76
D38V5, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          45                           484
  CLUS_2                          61                           409
  CLUS_3                          15                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(2Q37.1) MUTATED       17     55      5      4
  DEL PEAK  8(2Q37.1) WILD-TYPE    160    170     83    156
D38V6, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          17                           160
  CLUS_2                          55                           170
  CLUS_3                           5                            83
  CLUS_4                           4                           156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(2Q37.1) MUTATED       26      9     26     13
  DEL PEAK  8(2Q37.1) WILD-TYPE    187    159    130     96
D38V7, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          26                           187
  CLUS_2                           9                           159
  CLUS_3                          26                           130
  CLUS_4                          13                            96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED       35     31      8
  DEL PEAK  8(2Q37.1) WILD-TYPE    199    223    150
D38V8, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          35                           199
  CLUS_2                          31                           223
  CLUS_3                           8                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED       31     15     31
  DEL PEAK  8(2Q37.1) WILD-TYPE    213    174    196
D38V9, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          31                           213
  CLUS_2                          15                           174
  CLUS_3                          31                           196
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED       15     46     16
  DEL PEAK  8(2Q37.1) WILD-TYPE    188    144    251
D38V10, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          15                           188
  CLUS_2                          46                           144
  CLUS_3                          16                           251
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(2Q37.1) MUTATED       25     21      6     13
  DEL PEAK  8(2Q37.1) WILD-TYPE    115     86     76    167
D38V11, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          25                           115
  CLUS_2                          21                            86
  CLUS_3                           6                            76
  CLUS_4                          13                           167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED       33     14     18
  DEL PEAK  8(2Q37.1) WILD-TYPE    189    170     85
D38V12, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          33                           189
  CLUS_2                          14                           170
  CLUS_3                          18                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(2Q37.1) MUTATED       26     20      6     12
  DEL PEAK  8(2Q37.1) WILD-TYPE    101     99     99    142
D38V13, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          26                           101
  CLUS_2                          20                            99
  CLUS_3                           6                            99
  CLUS_4                          12                           142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(2Q37.1) MUTATED       19     19      6      2      5     13
  DEL PEAK  8(2Q37.1) WILD-TYPE     80     58    112     54     58     79
D38V14, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          19                            80
  CLUS_2                          19                            58
  CLUS_3                           6                           112
  CLUS_4                           2                            54
  CLUS_5                           5                            58
  CLUS_6                          13                            79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK  9(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P21.31) MUTATED       11     13     15     14
  DEL PEAK  9(3P21.31) WILD-TYPE    147     83    122    103
D39V1, multiclass
        clus
vv       DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  CLUS_1                           11                            147
  CLUS_2                           13                             83
  CLUS_3                           15                            122
  CLUS_4                           14                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P21.31) MUTATED       11     16      8     18
  DEL PEAK  9(3P21.31) WILD-TYPE    137     86     92    140
D39V2, multiclass
        clus
vv       DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  CLUS_1                           11                            137
  CLUS_2                           16                             86
  CLUS_3                            8                             92
  CLUS_4                           18                            140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P21.31) MUTATED       16     22      5     13
  DEL PEAK  9(3P21.31) WILD-TYPE    127    165     85    113
D39V3, multiclass
        clus
vv       DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  CLUS_1                           16                            127
  CLUS_2                           22                            165
  CLUS_3                            5                             85
  CLUS_4                           13                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.31) MUTATED       30     17      9
  DEL PEAK  9(3P21.31) WILD-TYPE    263    107    120
D39V4, multiclass
        clus
vv       DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  CLUS_1                           30                            263
  CLUS_2                           17                            107
  CLUS_3                            9                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.31) MUTATED       46     49     14
  DEL PEAK  9(3P21.31) WILD-TYPE    483    421     77
D39V5, multiclass
        clus
vv       DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  CLUS_1                           46                            483
  CLUS_2                           49                            421
  CLUS_3                           14                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P21.31) MUTATED       15     35      8      6
  DEL PEAK  9(3P21.31) WILD-TYPE    162    190     80    154
D39V6, multiclass
        clus
vv       DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  CLUS_1                           15                            162
  CLUS_2                           35                            190
  CLUS_3                            8                             80
  CLUS_4                            6                            154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P21.31) MUTATED       18     10     23     16
  DEL PEAK  9(3P21.31) WILD-TYPE    195    158    133     93
D39V7, multiclass
        clus
vv       DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  CLUS_1                           18                            195
  CLUS_2                           10                            158
  CLUS_3                           23                            133
  CLUS_4                           16                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.31) MUTATED       33     24     10
  DEL PEAK  9(3P21.31) WILD-TYPE    201    230    148
D39V8, multiclass
        clus
vv       DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  CLUS_1                           33                            201
  CLUS_2                           24                            230
  CLUS_3                           10                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.31) MUTATED       30     13     23
  DEL PEAK  9(3P21.31) WILD-TYPE    214    176    204
D39V9, multiclass
        clus
vv       DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  CLUS_1                           30                            214
  CLUS_2                           13                            176
  CLUS_3                           23                            204
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.31) MUTATED       23     26     17
  DEL PEAK  9(3P21.31) WILD-TYPE    180    164    250
D39V10, multiclass
        clus
vv       DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  CLUS_1                           23                            180
  CLUS_2                           26                            164
  CLUS_3                           17                            250
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P21.31) MUTATED       14     20      8      9
  DEL PEAK  9(3P21.31) WILD-TYPE    126     87     74    171
D39V11, multiclass
        clus
vv       DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  CLUS_1                           14                            126
  CLUS_2                           20                             87
  CLUS_3                            8                             74
  CLUS_4                            9                            171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.31) MUTATED       24      9     18
  DEL PEAK  9(3P21.31) WILD-TYPE    198    175     85
D39V12, multiclass
        clus
vv       DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  CLUS_1                           24                            198
  CLUS_2                            9                            175
  CLUS_3                           18                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P21.31) MUTATED       13     14     12     11
  DEL PEAK  9(3P21.31) WILD-TYPE    114    105     93    143
D39V13, multiclass
        clus
vv       DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  CLUS_1                           13                            114
  CLUS_2                           14                            105
  CLUS_3                           12                             93
  CLUS_4                           11                            143
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P21.31) MUTATED       12     15      6      2      6      9
  DEL PEAK  9(3P21.31) WILD-TYPE     87     62    112     54     57     83
D39V14, multiclass
        clus
vv       DEL PEAK  9(3P21.31) MUTATED DEL PEAK  9(3P21.31) WILD-TYPE
  CLUS_1                           12                             87
  CLUS_2                           15                             62
  CLUS_3                            6                            112
  CLUS_4                            2                             54
  CLUS_5                            6                             57
  CLUS_6                            9                             83
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 10(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q13.31) MUTATED       12      9     13     16
  DEL PEAK 10(3Q13.31) WILD-TYPE    146     87    124    101
D40V1, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           12                            146
  CLUS_2                            9                             87
  CLUS_3                           13                            124
  CLUS_4                           16                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q13.31) MUTATED       12     10      7     21
  DEL PEAK 10(3Q13.31) WILD-TYPE    136     92     93    137
D40V2, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           12                            136
  CLUS_2                           10                             92
  CLUS_3                            7                             93
  CLUS_4                           21                            137
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q13.31) MUTATED       13     18      9     14
  DEL PEAK 10(3Q13.31) WILD-TYPE    130    169     81    112
D40V3, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           13                            130
  CLUS_2                           18                            169
  CLUS_3                            9                             81
  CLUS_4                           14                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED       29     15     10
  DEL PEAK 10(3Q13.31) WILD-TYPE    264    109    119
D40V4, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           29                            264
  CLUS_2                           15                            109
  CLUS_3                           10                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED       43     41     11
  DEL PEAK 10(3Q13.31) WILD-TYPE    486    429     80
D40V5, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           43                            486
  CLUS_2                           41                            429
  CLUS_3                           11                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q13.31) MUTATED       12     27      7      4
  DEL PEAK 10(3Q13.31) WILD-TYPE    165    198     81    156
D40V6, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           12                            165
  CLUS_2                           27                            198
  CLUS_3                            7                             81
  CLUS_4                            4                            156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q13.31) MUTATED       25      9     15      9
  DEL PEAK 10(3Q13.31) WILD-TYPE    188    159    141    100
D40V7, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           25                            188
  CLUS_2                            9                            159
  CLUS_3                           15                            141
  CLUS_4                            9                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED       31     16     11
  DEL PEAK 10(3Q13.31) WILD-TYPE    203    238    147
D40V8, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           31                            203
  CLUS_2                           16                            238
  CLUS_3                           11                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED       20     11     18
  DEL PEAK 10(3Q13.31) WILD-TYPE    224    178    209
D40V9, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           20                            224
  CLUS_2                           11                            178
  CLUS_3                           18                            209
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED       15     21     13
  DEL PEAK 10(3Q13.31) WILD-TYPE    188    169    254
D40V10, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           15                            188
  CLUS_2                           21                            169
  CLUS_3                           13                            254
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q13.31) MUTATED        9     14      4     12
  DEL PEAK 10(3Q13.31) WILD-TYPE    131     93     78    168
D40V11, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                            9                            131
  CLUS_2                           14                             93
  CLUS_3                            4                             78
  CLUS_4                           12                            168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED       16      6     17
  DEL PEAK 10(3Q13.31) WILD-TYPE    206    178     86
D40V12, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           16                            206
  CLUS_2                            6                            178
  CLUS_3                           17                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q13.31) MUTATED       15      9      5      9
  DEL PEAK 10(3Q13.31) WILD-TYPE    112    110    100    145
D40V13, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           15                            112
  CLUS_2                            9                            110
  CLUS_3                            5                            100
  CLUS_4                            9                            145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3Q13.31) MUTATED       10     11      5      2      4      6
  DEL PEAK 10(3Q13.31) WILD-TYPE     89     66    113     54     59     86
D40V14, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           10                             89
  CLUS_2                           11                             66
  CLUS_3                            5                            113
  CLUS_4                            2                             54
  CLUS_5                            4                             59
  CLUS_6                            6                             86
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 11(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(3Q29) MUTATED       10     10     19     15
  DEL PEAK 11(3Q29) WILD-TYPE    148     86    118    102
D41V1, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        10                         148
  CLUS_2                        10                          86
  CLUS_3                        19                         118
  CLUS_4                        15                         102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(3Q29) MUTATED        9     13     12     20
  DEL PEAK 11(3Q29) WILD-TYPE    139     89     88    138
D41V2, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                         9                         139
  CLUS_2                        13                          89
  CLUS_3                        12                          88
  CLUS_4                        20                         138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(3Q29) MUTATED       13     23      9     15
  DEL PEAK 11(3Q29) WILD-TYPE    130    164     81    111
D41V3, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        13                         130
  CLUS_2                        23                         164
  CLUS_3                         9                          81
  CLUS_4                        15                         111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q29) MUTATED       32     15     13
  DEL PEAK 11(3Q29) WILD-TYPE    261    109    116
D41V4, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        32                         261
  CLUS_2                        15                         109
  CLUS_3                        13                         116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q29) MUTATED       54     41     12
  DEL PEAK 11(3Q29) WILD-TYPE    475    429     79
D41V5, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        54                         475
  CLUS_2                        41                         429
  CLUS_3                        12                          79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(3Q29) MUTATED       16     31      8      5
  DEL PEAK 11(3Q29) WILD-TYPE    161    194     80    155
D41V6, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        16                         161
  CLUS_2                        31                         194
  CLUS_3                         8                          80
  CLUS_4                         5                         155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(3Q29) MUTATED       22     13     22     11
  DEL PEAK 11(3Q29) WILD-TYPE    191    155    134     98
D41V7, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        22                         191
  CLUS_2                        13                         155
  CLUS_3                        22                         134
  CLUS_4                        11                          98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q29) MUTATED       28     25     15
  DEL PEAK 11(3Q29) WILD-TYPE    206    229    143
D41V8, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        28                         206
  CLUS_2                        25                         229
  CLUS_3                        15                         143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q29) MUTATED       33     13     20
  DEL PEAK 11(3Q29) WILD-TYPE    211    176    207
D41V9, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        33                         211
  CLUS_2                        13                         176
  CLUS_3                        20                         207
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q29) MUTATED       25     26     15
  DEL PEAK 11(3Q29) WILD-TYPE    178    164    252
D41V10, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        25                         178
  CLUS_2                        26                         164
  CLUS_3                        15                         252
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(3Q29) MUTATED       12     15      5     14
  DEL PEAK 11(3Q29) WILD-TYPE    128     92     77    166
D41V11, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        12                         128
  CLUS_2                        15                          92
  CLUS_3                         5                          77
  CLUS_4                        14                         166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q29) MUTATED       18     12     16
  DEL PEAK 11(3Q29) WILD-TYPE    204    172     87
D41V12, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        18                         204
  CLUS_2                        12                         172
  CLUS_3                        16                          87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(3Q29) MUTATED       15     13      6     11
  DEL PEAK 11(3Q29) WILD-TYPE    112    106     99    143
D41V13, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        15                         112
  CLUS_2                        13                         106
  CLUS_3                         6                          99
  CLUS_4                        11                         143
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(3Q29) MUTATED       11     12      8      2      5      7
  DEL PEAK 11(3Q29) WILD-TYPE     88     65    110     54     58     85
D41V14, multiclass
        clus
vv       DEL PEAK 11(3Q29) MUTATED DEL PEAK 11(3Q29) WILD-TYPE
  CLUS_1                        11                          88
  CLUS_2                        12                          65
  CLUS_3                         8                         110
  CLUS_4                         2                          54
  CLUS_5                         5                          58
  CLUS_6                         7                          85
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 12(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q34.3) MUTATED       18     23     15     25
  DEL PEAK 12(4Q34.3) WILD-TYPE    140     73    122     92
D42V1, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          18                           140
  CLUS_2                          23                            73
  CLUS_3                          15                           122
  CLUS_4                          25                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q34.3) MUTATED       17     31     10     23
  DEL PEAK 12(4Q34.3) WILD-TYPE    131     71     90    135
D42V2, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          17                           131
  CLUS_2                          31                            71
  CLUS_3                          10                            90
  CLUS_4                          23                           135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q34.3) MUTATED       15     40     14     18
  DEL PEAK 12(4Q34.3) WILD-TYPE    128    147     76    108
D42V3, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          15                           128
  CLUS_2                          40                           147
  CLUS_3                          14                            76
  CLUS_4                          18                           108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q34.3) MUTATED       55     13     19
  DEL PEAK 12(4Q34.3) WILD-TYPE    238    111    110
D42V4, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          55                           238
  CLUS_2                          13                           111
  CLUS_3                          19                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q34.3) MUTATED       77    139     14
  DEL PEAK 12(4Q34.3) WILD-TYPE    452    331     77
D42V5, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          77                           452
  CLUS_2                         139                           331
  CLUS_3                          14                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q34.3) MUTATED       25     77      8     51
  DEL PEAK 12(4Q34.3) WILD-TYPE    152    148     80    109
D42V6, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          25                           152
  CLUS_2                          77                           148
  CLUS_3                           8                            80
  CLUS_4                          51                           109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q34.3) MUTATED       50     35     46     22
  DEL PEAK 12(4Q34.3) WILD-TYPE    163    133    110     87
D42V7, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          50                           163
  CLUS_2                          35                           133
  CLUS_3                          46                           110
  CLUS_4                          22                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q34.3) MUTATED       59     58     36
  DEL PEAK 12(4Q34.3) WILD-TYPE    175    196    122
D42V8, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          59                           175
  CLUS_2                          58                           196
  CLUS_3                          36                           122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q34.3) MUTATED       46     52     69
  DEL PEAK 12(4Q34.3) WILD-TYPE    198    137    158
D42V9, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          46                           198
  CLUS_2                          52                           137
  CLUS_3                          69                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q34.3) MUTATED       31     56     80
  DEL PEAK 12(4Q34.3) WILD-TYPE    172    134    187
D42V10, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          31                           172
  CLUS_2                          56                           134
  CLUS_3                          80                           187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q34.3) MUTATED       26     30     30     50
  DEL PEAK 12(4Q34.3) WILD-TYPE    114     77     52    130
D42V11, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          26                           114
  CLUS_2                          30                            77
  CLUS_3                          30                            52
  CLUS_4                          50                           130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q34.3) MUTATED       62     56     18
  DEL PEAK 12(4Q34.3) WILD-TYPE    160    128     85
D42V12, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          62                           160
  CLUS_2                          56                           128
  CLUS_3                          18                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q34.3) MUTATED       30     31     32     43
  DEL PEAK 12(4Q34.3) WILD-TYPE     97     88     73    111
D42V13, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          30                            97
  CLUS_2                          31                            88
  CLUS_3                          32                            73
  CLUS_4                          43                           111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(4Q34.3) MUTATED       22     30     31     18      4     31
  DEL PEAK 12(4Q34.3) WILD-TYPE     77     47     87     38     59     61
D42V14, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          22                            77
  CLUS_2                          30                            47
  CLUS_3                          31                            87
  CLUS_4                          18                            38
  CLUS_5                           4                            59
  CLUS_6                          31                            61
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 13(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5P15.33) MUTATED        6     22      9     14
  DEL PEAK 13(5P15.33) WILD-TYPE    152     74    128    103
D43V1, multiclass
        clus
vv       DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                            6                            152
  CLUS_2                           22                             74
  CLUS_3                            9                            128
  CLUS_4                           14                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5P15.33) MUTATED        7     24      8     12
  DEL PEAK 13(5P15.33) WILD-TYPE    141     78     92    146
D43V2, multiclass
        clus
vv       DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                            7                            141
  CLUS_2                           24                             78
  CLUS_3                            8                             92
  CLUS_4                           12                            146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5P15.33) MUTATED        7     28      9      7
  DEL PEAK 13(5P15.33) WILD-TYPE    136    159     81    119
D43V3, multiclass
        clus
vv       DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                            7                            136
  CLUS_2                           28                            159
  CLUS_3                            9                             81
  CLUS_4                            7                            119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5P15.33) MUTATED       33      5     13
  DEL PEAK 13(5P15.33) WILD-TYPE    260    119    116
D43V4, multiclass
        clus
vv       DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           33                            260
  CLUS_2                            5                            119
  CLUS_3                           13                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5P15.33) MUTATED       35     53     19
  DEL PEAK 13(5P15.33) WILD-TYPE    494    417     72
D43V5, multiclass
        clus
vv       DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           35                            494
  CLUS_2                           53                            417
  CLUS_3                           19                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5P15.33) MUTATED       16     40      4      3
  DEL PEAK 13(5P15.33) WILD-TYPE    161    185     84    157
D43V6, multiclass
        clus
vv       DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           16                            161
  CLUS_2                           40                            185
  CLUS_3                            4                             84
  CLUS_4                            3                            157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5P15.33) MUTATED       22     15     20     10
  DEL PEAK 13(5P15.33) WILD-TYPE    191    153    136     99
D43V7, multiclass
        clus
vv       DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           22                            191
  CLUS_2                           15                            153
  CLUS_3                           20                            136
  CLUS_4                           10                             99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5P15.33) MUTATED       28     24     15
  DEL PEAK 13(5P15.33) WILD-TYPE    206    230    143
D43V8, multiclass
        clus
vv       DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           28                            206
  CLUS_2                           24                            230
  CLUS_3                           15                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5P15.33) MUTATED       33     15     20
  DEL PEAK 13(5P15.33) WILD-TYPE    211    174    207
D43V9, multiclass
        clus
vv       DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           33                            211
  CLUS_2                           15                            174
  CLUS_3                           20                            207
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5P15.33) MUTATED       20     31     17
  DEL PEAK 13(5P15.33) WILD-TYPE    183    159    250
D43V10, multiclass
        clus
vv       DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           20                            183
  CLUS_2                           31                            159
  CLUS_3                           17                            250
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5P15.33) MUTATED       10     20      3     17
  DEL PEAK 13(5P15.33) WILD-TYPE    130     87     79    163
D43V11, multiclass
        clus
vv       DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           10                            130
  CLUS_2                           20                             87
  CLUS_3                            3                             79
  CLUS_4                           17                            163
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5P15.33) MUTATED       20     15     15
  DEL PEAK 13(5P15.33) WILD-TYPE    202    169     88
D43V12, multiclass
        clus
vv       DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           20                            202
  CLUS_2                           15                            169
  CLUS_3                           15                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5P15.33) MUTATED       14     20      3     13
  DEL PEAK 13(5P15.33) WILD-TYPE    113     99    102    141
D43V13, multiclass
        clus
vv       DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           14                            113
  CLUS_2                           20                             99
  CLUS_3                            3                            102
  CLUS_4                           13                            141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(5P15.33) MUTATED        7     20      9      0      4     10
  DEL PEAK 13(5P15.33) WILD-TYPE     92     57    109     56     59     82
D43V14, multiclass
        clus
vv       DEL PEAK 13(5P15.33) MUTATED DEL PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                            7                             92
  CLUS_2                           20                             57
  CLUS_3                            9                            109
  CLUS_4                            0                             56
  CLUS_5                            4                             59
  CLUS_6                           10                             82
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 14(5Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q34) MUTATED        8     26     12     17
  DEL PEAK 14(5Q34) WILD-TYPE    150     70    125    100
D44V1, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                         8                         150
  CLUS_2                        26                          70
  CLUS_3                        12                         125
  CLUS_4                        17                         100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q34) MUTATED       10     31     11     11
  DEL PEAK 14(5Q34) WILD-TYPE    138     71     89    147
D44V2, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                        10                         138
  CLUS_2                        31                          71
  CLUS_3                        11                          89
  CLUS_4                        11                         147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q34) MUTATED        5     37      9     11
  DEL PEAK 14(5Q34) WILD-TYPE    138    150     81    115
D44V3, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                         5                         138
  CLUS_2                        37                         150
  CLUS_3                         9                          81
  CLUS_4                        11                         115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q34) MUTATED       42      5     15
  DEL PEAK 14(5Q34) WILD-TYPE    251    119    114
D44V4, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                        42                         251
  CLUS_2                         5                         119
  CLUS_3                        15                         114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q34) MUTATED       39     72     22
  DEL PEAK 14(5Q34) WILD-TYPE    490    398     69
D44V5, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                        39                         490
  CLUS_2                        72                         398
  CLUS_3                        22                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q34) MUTATED       19     54      4      3
  DEL PEAK 14(5Q34) WILD-TYPE    158    171     84    157
D44V6, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                        19                         158
  CLUS_2                        54                         171
  CLUS_3                         4                          84
  CLUS_4                         3                         157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q34) MUTATED       25     15     24     12
  DEL PEAK 14(5Q34) WILD-TYPE    188    153    132     97
D44V7, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                        25                         188
  CLUS_2                        15                         153
  CLUS_3                        24                         132
  CLUS_4                        12                          97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q34) MUTATED       32     33     11
  DEL PEAK 14(5Q34) WILD-TYPE    202    221    147
D44V8, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                        32                         202
  CLUS_2                        33                         221
  CLUS_3                        11                         147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q34) MUTATED       47     19     22
  DEL PEAK 14(5Q34) WILD-TYPE    197    170    205
D44V9, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                        47                         197
  CLUS_2                        19                         170
  CLUS_3                        22                         205
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q34) MUTATED       24     46     18
  DEL PEAK 14(5Q34) WILD-TYPE    179    144    249
D44V10, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                        24                         179
  CLUS_2                        46                         144
  CLUS_3                        18                         249
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q34) MUTATED       14     28      4     17
  DEL PEAK 14(5Q34) WILD-TYPE    126     79     78    163
D44V11, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                        14                         126
  CLUS_2                        28                          79
  CLUS_3                         4                          78
  CLUS_4                        17                         163
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q34) MUTATED       25     18     20
  DEL PEAK 14(5Q34) WILD-TYPE    197    166     83
D44V12, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                        25                         197
  CLUS_2                        18                         166
  CLUS_3                        20                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q34) MUTATED       20     24      5     14
  DEL PEAK 14(5Q34) WILD-TYPE    107     95    100    140
D44V13, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                        20                         107
  CLUS_2                        24                          95
  CLUS_3                         5                         100
  CLUS_4                        14                         140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q34) MUTATED       14     23     10      0      4     12
  DEL PEAK 14(5Q34) WILD-TYPE     85     54    108     56     59     80
D44V14, multiclass
        clus
vv       DEL PEAK 14(5Q34) MUTATED DEL PEAK 14(5Q34) WILD-TYPE
  CLUS_1                        14                          85
  CLUS_2                        23                          54
  CLUS_3                        10                         108
  CLUS_4                         0                          56
  CLUS_5                         4                          59
  CLUS_6                        12                          80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 15(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED       23     20     13     22
  DEL PEAK 15(6P25.3) WILD-TYPE    135     76    124     95
D45V1, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          23                           135
  CLUS_2                          20                            76
  CLUS_3                          13                           124
  CLUS_4                          22                            95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED       20     23     10     25
  DEL PEAK 15(6P25.3) WILD-TYPE    128     79     90    133
D45V2, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          20                           128
  CLUS_2                          23                            79
  CLUS_3                          10                            90
  CLUS_4                          25                           133
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED       22     35      9     18
  DEL PEAK 15(6P25.3) WILD-TYPE    121    152     81    108
D45V3, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          22                           121
  CLUS_2                          35                           152
  CLUS_3                           9                            81
  CLUS_4                          18                           108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       46     20     18
  DEL PEAK 15(6P25.3) WILD-TYPE    247    104    111
D45V4, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          46                           247
  CLUS_2                          20                           104
  CLUS_3                          18                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       81     45     12
  DEL PEAK 15(6P25.3) WILD-TYPE    448    425     79
D45V5, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          81                           448
  CLUS_2                          45                           425
  CLUS_3                          12                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED       21     28     14      8
  DEL PEAK 15(6P25.3) WILD-TYPE    156    197     74    152
D45V6, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          21                           156
  CLUS_2                          28                           197
  CLUS_3                          14                            74
  CLUS_4                           8                           152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED       28     20     21     15
  DEL PEAK 15(6P25.3) WILD-TYPE    185    148    135     94
D45V7, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          28                           185
  CLUS_2                          20                           148
  CLUS_3                          21                           135
  CLUS_4                          15                            94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       42     23     19
  DEL PEAK 15(6P25.3) WILD-TYPE    192    231    139
D45V8, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          42                           192
  CLUS_2                          23                           231
  CLUS_3                          19                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       43     14     22
  DEL PEAK 15(6P25.3) WILD-TYPE    201    175    205
D45V9, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          43                           201
  CLUS_2                          14                           175
  CLUS_3                          22                           205
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       37     23     19
  DEL PEAK 15(6P25.3) WILD-TYPE    166    167    248
D45V10, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          37                           166
  CLUS_2                          23                           167
  CLUS_3                          19                           248
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED       17     12      8     13
  DEL PEAK 15(6P25.3) WILD-TYPE    123     95     74    167
D45V11, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          17                           123
  CLUS_2                          12                            95
  CLUS_3                           8                            74
  CLUS_4                          13                           167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       22     14     14
  DEL PEAK 15(6P25.3) WILD-TYPE    200    170     89
D45V12, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          22                           200
  CLUS_2                          14                           170
  CLUS_3                          14                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED       14     16      7     12
  DEL PEAK 15(6P25.3) WILD-TYPE    113    103     98    142
D45V13, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          14                           113
  CLUS_2                          16                           103
  CLUS_3                           7                            98
  CLUS_4                          12                           142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(6P25.3) MUTATED       10      9      5      4     11     10
  DEL PEAK 15(6P25.3) WILD-TYPE     89     68    113     52     52     82
D45V14, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          10                            89
  CLUS_2                           9                            68
  CLUS_3                           5                           113
  CLUS_4                           4                            52
  CLUS_5                          11                            52
  CLUS_6                          10                            82
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 16(6Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q22.31) MUTATED       48     26     40     33
  DEL PEAK 16(6Q22.31) WILD-TYPE    110     70     97     84
D46V1, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           48                            110
  CLUS_2                           26                             70
  CLUS_3                           40                             97
  CLUS_4                           33                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q22.31) MUTATED       43     29     29     46
  DEL PEAK 16(6Q22.31) WILD-TYPE    105     73     71    112
D46V2, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           43                            105
  CLUS_2                           29                             73
  CLUS_3                           29                             71
  CLUS_4                           46                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q22.31) MUTATED       41     62     21     29
  DEL PEAK 16(6Q22.31) WILD-TYPE    102    125     69     97
D46V3, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           41                            102
  CLUS_2                           62                            125
  CLUS_3                           21                             69
  CLUS_4                           29                             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q22.31) MUTATED       80     31     42
  DEL PEAK 16(6Q22.31) WILD-TYPE    213     93     87
D46V4, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           80                            213
  CLUS_2                           31                             93
  CLUS_3                           42                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q22.31) MUTATED      156     71     13
  DEL PEAK 16(6Q22.31) WILD-TYPE    373    399     78
D46V5, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                          156                            373
  CLUS_2                           71                            399
  CLUS_3                           13                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q22.31) MUTATED       43     48     17      9
  DEL PEAK 16(6Q22.31) WILD-TYPE    134    177     71    151
D46V6, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           43                            134
  CLUS_2                           48                            177
  CLUS_3                           17                             71
  CLUS_4                            9                            151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q22.31) MUTATED       50     22     34     20
  DEL PEAK 16(6Q22.31) WILD-TYPE    163    146    122     89
D46V7, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           50                            163
  CLUS_2                           22                            146
  CLUS_3                           34                            122
  CLUS_4                           20                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q22.31) MUTATED       60     49     17
  DEL PEAK 16(6Q22.31) WILD-TYPE    174    205    141
D46V8, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           60                            174
  CLUS_2                           49                            205
  CLUS_3                           17                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q22.31) MUTATED       75     21     35
  DEL PEAK 16(6Q22.31) WILD-TYPE    169    168    192
D46V9, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           75                            169
  CLUS_2                           21                            168
  CLUS_3                           35                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q22.31) MUTATED       66     39     26
  DEL PEAK 16(6Q22.31) WILD-TYPE    137    151    241
D46V10, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           66                            137
  CLUS_2                           39                            151
  CLUS_3                           26                            241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q22.31) MUTATED       35     17      6     19
  DEL PEAK 16(6Q22.31) WILD-TYPE    105     90     76    161
D46V11, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           35                            105
  CLUS_2                           17                             90
  CLUS_3                            6                             76
  CLUS_4                           19                            161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q22.31) MUTATED       35     21     21
  DEL PEAK 16(6Q22.31) WILD-TYPE    187    163     82
D46V12, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           35                            187
  CLUS_2                           21                            163
  CLUS_3                           21                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q22.31) MUTATED       29     21      7     18
  DEL PEAK 16(6Q22.31) WILD-TYPE     98     98     98    136
D46V13, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           29                             98
  CLUS_2                           21                             98
  CLUS_3                            7                             98
  CLUS_4                           18                            136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(6Q22.31) MUTATED       24      9     13      5     16      8
  DEL PEAK 16(6Q22.31) WILD-TYPE     75     68    105     51     47     84
D46V14, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           24                             75
  CLUS_2                            9                             68
  CLUS_3                           13                            105
  CLUS_4                            5                             51
  CLUS_5                           16                             47
  CLUS_6                            8                             84
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 17(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       50     30     47     33
  DEL PEAK 17(6Q26) WILD-TYPE    108     66     90     84
D47V1, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        50                         108
  CLUS_2                        30                          66
  CLUS_3                        47                          90
  CLUS_4                        33                          84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       46     28     33     53
  DEL PEAK 17(6Q26) WILD-TYPE    102     74     67    105
D47V2, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        46                         102
  CLUS_2                        28                          74
  CLUS_3                        33                          67
  CLUS_4                        53                         105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       44     67     24     36
  DEL PEAK 17(6Q26) WILD-TYPE     99    120     66     90
D47V3, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        44                          99
  CLUS_2                        67                         120
  CLUS_3                        24                          66
  CLUS_4                        36                          90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       86     41     44
  DEL PEAK 17(6Q26) WILD-TYPE    207     83     85
D47V4, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        86                         207
  CLUS_2                        41                          83
  CLUS_3                        44                          85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED      173     74     14
  DEL PEAK 17(6Q26) WILD-TYPE    356    396     77
D47V5, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                       173                         356
  CLUS_2                        74                         396
  CLUS_3                        14                          77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       50     50     16      9
  DEL PEAK 17(6Q26) WILD-TYPE    127    175     72    151
D47V6, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        50                         127
  CLUS_2                        50                         175
  CLUS_3                        16                          72
  CLUS_4                         9                         151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       58     23     39     23
  DEL PEAK 17(6Q26) WILD-TYPE    155    145    117     86
D47V7, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        58                         155
  CLUS_2                        23                         145
  CLUS_3                        39                         117
  CLUS_4                        23                          86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       66     61     16
  DEL PEAK 17(6Q26) WILD-TYPE    168    193    142
D47V8, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        66                         168
  CLUS_2                        61                         193
  CLUS_3                        16                         142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       77     21     40
  DEL PEAK 17(6Q26) WILD-TYPE    167    168    187
D47V9, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        77                         167
  CLUS_2                        21                         168
  CLUS_3                        40                         187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       69     43     26
  DEL PEAK 17(6Q26) WILD-TYPE    134    147    241
D47V10, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        69                         134
  CLUS_2                        43                         147
  CLUS_3                        26                         241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       40     16      5     20
  DEL PEAK 17(6Q26) WILD-TYPE    100     91     77    160
D47V11, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        40                         100
  CLUS_2                        16                          91
  CLUS_3                         5                          77
  CLUS_4                        20                         160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       39     22     20
  DEL PEAK 17(6Q26) WILD-TYPE    183    162     83
D47V12, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        39                         183
  CLUS_2                        22                         162
  CLUS_3                        20                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       29     22      7     20
  DEL PEAK 17(6Q26) WILD-TYPE     98     97     98    134
D47V13, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        29                          98
  CLUS_2                        22                          97
  CLUS_3                         7                          98
  CLUS_4                        20                         134
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(6Q26) MUTATED       27      7     13      5     17      9
  DEL PEAK 17(6Q26) WILD-TYPE     72     70    105     51     46     83
D47V14, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        27                          72
  CLUS_2                         7                          70
  CLUS_3                        13                         105
  CLUS_4                         5                          51
  CLUS_5                        17                          46
  CLUS_6                         9                          83
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 18(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       25      8     13     13
  DEL PEAK 18(8P23.2) WILD-TYPE    133     88    124    104
D48V1, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          25                           133
  CLUS_2                           8                            88
  CLUS_3                          13                           124
  CLUS_4                          13                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       24     11      9     15
  DEL PEAK 18(8P23.2) WILD-TYPE    124     91     91    143
D48V2, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          24                           124
  CLUS_2                          11                            91
  CLUS_3                           9                            91
  CLUS_4                          15                           143
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       23     20      6     15
  DEL PEAK 18(8P23.2) WILD-TYPE    120    167     84    111
D48V3, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          23                           120
  CLUS_2                          20                           167
  CLUS_3                           6                            84
  CLUS_4                          15                           111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       29     19     16
  DEL PEAK 18(8P23.2) WILD-TYPE    264    105    113
D48V4, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          29                           264
  CLUS_2                          19                           105
  CLUS_3                          16                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       60     19      9
  DEL PEAK 18(8P23.2) WILD-TYPE    469    451     82
D48V5, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          60                           469
  CLUS_2                          19                           451
  CLUS_3                           9                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       23     11      1      0
  DEL PEAK 18(8P23.2) WILD-TYPE    154    214     87    160
D48V6, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          23                           154
  CLUS_2                          11                           214
  CLUS_3                           1                            87
  CLUS_4                           0                           160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       12      8     14      4
  DEL PEAK 18(8P23.2) WILD-TYPE    201    160    142    105
D48V7, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          12                           201
  CLUS_2                           8                           160
  CLUS_3                          14                           142
  CLUS_4                           4                           105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       19     12      7
  DEL PEAK 18(8P23.2) WILD-TYPE    215    242    151
D48V8, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          19                           215
  CLUS_2                          12                           242
  CLUS_3                           7                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       27      6      3
  DEL PEAK 18(8P23.2) WILD-TYPE    217    183    224
D48V9, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          27                           217
  CLUS_2                           6                           183
  CLUS_3                           3                           224
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       22      8      6
  DEL PEAK 18(8P23.2) WILD-TYPE    181    182    261
D48V10, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          22                           181
  CLUS_2                           8                           182
  CLUS_3                           6                           261
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED        8      7      2      5
  DEL PEAK 18(8P23.2) WILD-TYPE    132    100     80    175
D48V11, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           8                           132
  CLUS_2                           7                           100
  CLUS_3                           2                            80
  CLUS_4                           5                           175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED        9      3     10
  DEL PEAK 18(8P23.2) WILD-TYPE    213    181     93
D48V12, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           9                           213
  CLUS_2                           3                           181
  CLUS_3                          10                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED        3     12      1      5
  DEL PEAK 18(8P23.2) WILD-TYPE    124    107    104    149
D48V13, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           3                           124
  CLUS_2                          12                           107
  CLUS_3                           1                           104
  CLUS_4                           5                           149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P23.2) MUTATED        1      8      3      0      9      0
  DEL PEAK 18(8P23.2) WILD-TYPE     98     69    115     56     54     92
D48V14, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           1                            98
  CLUS_2                           8                            69
  CLUS_3                           3                           115
  CLUS_4                           0                            56
  CLUS_5                           9                            54
  CLUS_6                           0                            92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 19(8Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8Q24.3) MUTATED       12     14     13      9
  DEL PEAK 19(8Q24.3) WILD-TYPE    146     82    124    108
D49V1, multiclass
        clus
vv       DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  CLUS_1                          12                           146
  CLUS_2                          14                            82
  CLUS_3                          13                           124
  CLUS_4                           9                           108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8Q24.3) MUTATED       13      8     10     17
  DEL PEAK 19(8Q24.3) WILD-TYPE    135     94     90    141
D49V2, multiclass
        clus
vv       DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  CLUS_1                          13                           135
  CLUS_2                           8                            94
  CLUS_3                          10                            90
  CLUS_4                          17                           141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8Q24.3) MUTATED       23     15      8      5
  DEL PEAK 19(8Q24.3) WILD-TYPE    120    172     82    121
D49V3, multiclass
        clus
vv       DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  CLUS_1                          23                           120
  CLUS_2                          15                           172
  CLUS_3                           8                            82
  CLUS_4                           5                           121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8Q24.3) MUTATED       30      8     13
  DEL PEAK 19(8Q24.3) WILD-TYPE    263    116    116
D49V4, multiclass
        clus
vv       DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  CLUS_1                          30                           263
  CLUS_2                           8                           116
  CLUS_3                          13                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8Q24.3) MUTATED       52     19      7
  DEL PEAK 19(8Q24.3) WILD-TYPE    477    451     84
D49V5, multiclass
        clus
vv       DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  CLUS_1                          52                           477
  CLUS_2                          19                           451
  CLUS_3                           7                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8Q24.3) MUTATED       20     16      2      0
  DEL PEAK 19(8Q24.3) WILD-TYPE    157    209     86    160
D49V6, multiclass
        clus
vv       DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  CLUS_1                          20                           157
  CLUS_2                          16                           209
  CLUS_3                           2                            86
  CLUS_4                           0                           160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8Q24.3) MUTATED       12      6     13      7
  DEL PEAK 19(8Q24.3) WILD-TYPE    201    162    143    102
D49V7, multiclass
        clus
vv       DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  CLUS_1                          12                           201
  CLUS_2                           6                           162
  CLUS_3                          13                           143
  CLUS_4                           7                           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8Q24.3) MUTATED       20     12      6
  DEL PEAK 19(8Q24.3) WILD-TYPE    214    242    152
D49V8, multiclass
        clus
vv       DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  CLUS_1                          20                           214
  CLUS_2                          12                           242
  CLUS_3                           6                           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8Q24.3) MUTATED       22      7     10
  DEL PEAK 19(8Q24.3) WILD-TYPE    222    182    217
D49V9, multiclass
        clus
vv       DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  CLUS_1                          22                           222
  CLUS_2                           7                           182
  CLUS_3                          10                           217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8Q24.3) MUTATED       20     12      7
  DEL PEAK 19(8Q24.3) WILD-TYPE    183    178    260
D49V10, multiclass
        clus
vv       DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  CLUS_1                          20                           183
  CLUS_2                          12                           178
  CLUS_3                           7                           260
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8Q24.3) MUTATED       11      9      1      6
  DEL PEAK 19(8Q24.3) WILD-TYPE    129     98     81    174
D49V11, multiclass
        clus
vv       DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  CLUS_1                          11                           129
  CLUS_2                           9                            98
  CLUS_3                           1                            81
  CLUS_4                           6                           174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8Q24.3) MUTATED       10      4     13
  DEL PEAK 19(8Q24.3) WILD-TYPE    212    180     90
D49V12, multiclass
        clus
vv       DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  CLUS_1                          10                           212
  CLUS_2                           4                           180
  CLUS_3                          13                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8Q24.3) MUTATED        9     11      2      4
  DEL PEAK 19(8Q24.3) WILD-TYPE    118    108    103    150
D49V13, multiclass
        clus
vv       DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  CLUS_1                           9                           118
  CLUS_2                          11                           108
  CLUS_3                           2                           103
  CLUS_4                           4                           150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(8Q24.3) MUTATED        6      5      2      0      8      5
  DEL PEAK 19(8Q24.3) WILD-TYPE     93     72    116     56     55     87
D49V14, multiclass
        clus
vv       DEL PEAK 19(8Q24.3) MUTATED DEL PEAK 19(8Q24.3) WILD-TYPE
  CLUS_1                           6                            93
  CLUS_2                           5                            72
  CLUS_3                           2                           116
  CLUS_4                           0                            56
  CLUS_5                           8                            55
  CLUS_6                           5                            87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 20(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P21.3) MUTATED      107     62    121     78
  DEL PEAK 20(9P21.3) WILD-TYPE     51     34     16     39
D50V1, multiclass
        clus
vv       DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  CLUS_1                         107                            51
  CLUS_2                          62                            34
  CLUS_3                         121                            16
  CLUS_4                          78                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P21.3) MUTATED      102     60     91    115
  DEL PEAK 20(9P21.3) WILD-TYPE     46     42      9     43
D50V2, multiclass
        clus
vv       DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  CLUS_1                         102                            46
  CLUS_2                          60                            42
  CLUS_3                          91                             9
  CLUS_4                         115                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P21.3) MUTATED      105    128     67     95
  DEL PEAK 20(9P21.3) WILD-TYPE     38     59     23     31
D50V3, multiclass
        clus
vv       DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  CLUS_1                         105                            38
  CLUS_2                         128                            59
  CLUS_3                          67                            23
  CLUS_4                          95                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P21.3) MUTATED      198     96    101
  DEL PEAK 20(9P21.3) WILD-TYPE     95     28     28
D50V4, multiclass
        clus
vv       DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  CLUS_1                         198                            95
  CLUS_2                          96                            28
  CLUS_3                         101                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P21.3) MUTATED      406    147     42
  DEL PEAK 20(9P21.3) WILD-TYPE    123    323     49
D50V5, multiclass
        clus
vv       DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  CLUS_1                         406                           123
  CLUS_2                         147                           323
  CLUS_3                          42                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P21.3) MUTATED      138     91     25     29
  DEL PEAK 20(9P21.3) WILD-TYPE     39    134     63    131
D50V6, multiclass
        clus
vv       DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  CLUS_1                         138                            39
  CLUS_2                          91                           134
  CLUS_3                          25                            63
  CLUS_4                          29                           131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P21.3) MUTATED      112     63     98     49
  DEL PEAK 20(9P21.3) WILD-TYPE    101    105     58     60
D50V7, multiclass
        clus
vv       DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  CLUS_1                         112                           101
  CLUS_2                          63                           105
  CLUS_3                          98                            58
  CLUS_4                          49                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P21.3) MUTATED      143    127     52
  DEL PEAK 20(9P21.3) WILD-TYPE     91    127    106
D50V8, multiclass
        clus
vv       DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  CLUS_1                         143                            91
  CLUS_2                         127                           127
  CLUS_3                          52                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P21.3) MUTATED      163     57     58
  DEL PEAK 20(9P21.3) WILD-TYPE     81    132    169
D50V9, multiclass
        clus
vv       DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  CLUS_1                         163                            81
  CLUS_2                          57                           132
  CLUS_3                          58                           169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P21.3) MUTATED      144     65     69
  DEL PEAK 20(9P21.3) WILD-TYPE     59    125    198
D50V10, multiclass
        clus
vv       DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  CLUS_1                         144                            59
  CLUS_2                          65                           125
  CLUS_3                          69                           198
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P21.3) MUTATED       50     43     25     56
  DEL PEAK 20(9P21.3) WILD-TYPE     90     64     57    124
D50V11, multiclass
        clus
vv       DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  CLUS_1                          50                            90
  CLUS_2                          43                            64
  CLUS_3                          25                            57
  CLUS_4                          56                           124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P21.3) MUTATED       59     56     59
  DEL PEAK 20(9P21.3) WILD-TYPE    163    128     44
D50V12, multiclass
        clus
vv       DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  CLUS_1                          59                           163
  CLUS_2                          56                           128
  CLUS_3                          59                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P21.3) MUTATED       48     55     23     47
  DEL PEAK 20(9P21.3) WILD-TYPE     79     64     82    107
D50V13, multiclass
        clus
vv       DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  CLUS_1                          48                            79
  CLUS_2                          55                            64
  CLUS_3                          23                            82
  CLUS_4                          47                           107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(9P21.3) MUTATED       32     26     36      8     44     27
  DEL PEAK 20(9P21.3) WILD-TYPE     67     51     82     48     19     65
D50V14, multiclass
        clus
vv       DEL PEAK 20(9P21.3) MUTATED DEL PEAK 20(9P21.3) WILD-TYPE
  CLUS_1                          32                            67
  CLUS_2                          26                            51
  CLUS_3                          36                            82
  CLUS_4                           8                            48
  CLUS_5                          44                            19
  CLUS_6                          27                            65
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 21(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10P15.3) MUTATED      136     61    125     86
  DEL PEAK 21(10P15.3) WILD-TYPE     22     35     12     31
D51V1, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          136                             22
  CLUS_2                           61                             35
  CLUS_3                          125                             12
  CLUS_4                           86                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10P15.3) MUTATED      125     59     89    135
  DEL PEAK 21(10P15.3) WILD-TYPE     23     43     11     23
D51V2, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          125                             23
  CLUS_2                           59                             43
  CLUS_3                           89                             11
  CLUS_4                          135                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10P15.3) MUTATED      127    142     71    103
  DEL PEAK 21(10P15.3) WILD-TYPE     16     45     19     23
D51V3, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          127                             16
  CLUS_2                          142                             45
  CLUS_3                           71                             19
  CLUS_4                          103                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P15.3) MUTATED      223    105    115
  DEL PEAK 21(10P15.3) WILD-TYPE     70     19     14
D51V4, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          223                             70
  CLUS_2                          105                             19
  CLUS_3                          115                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P15.3) MUTATED      468     25     60
  DEL PEAK 21(10P15.3) WILD-TYPE     61    445     31
D51V5, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          468                             61
  CLUS_2                           25                            445
  CLUS_3                           60                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10P15.3) MUTATED      162      8     27      7
  DEL PEAK 21(10P15.3) WILD-TYPE     15    217     61    153
D51V6, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          162                             15
  CLUS_2                            8                            217
  CLUS_3                           27                             61
  CLUS_4                            7                            153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10P15.3) MUTATED       86     49     75     36
  DEL PEAK 21(10P15.3) WILD-TYPE    127    119     81     73
D51V7, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                           86                            127
  CLUS_2                           49                            119
  CLUS_3                           75                             81
  CLUS_4                           36                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P15.3) MUTATED       98    108     40
  DEL PEAK 21(10P15.3) WILD-TYPE    136    146    118
D51V8, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                           98                            136
  CLUS_2                          108                            146
  CLUS_3                           40                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P15.3) MUTATED      186     21      3
  DEL PEAK 21(10P15.3) WILD-TYPE     58    168    224
D51V9, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          186                             58
  CLUS_2                           21                            168
  CLUS_3                            3                            224
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P15.3) MUTATED      178      9     23
  DEL PEAK 21(10P15.3) WILD-TYPE     25    181    244
D51V10, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          178                             25
  CLUS_2                            9                            181
  CLUS_3                           23                            244
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10P15.3) MUTATED       32     26      6     19
  DEL PEAK 21(10P15.3) WILD-TYPE    108     81     76    161
D51V11, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                           32                            108
  CLUS_2                           26                             81
  CLUS_3                            6                             76
  CLUS_4                           19                            161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P15.3) MUTATED       11     13     59
  DEL PEAK 21(10P15.3) WILD-TYPE    211    171     44
D51V12, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                           11                            211
  CLUS_2                           13                            171
  CLUS_3                           59                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10P15.3) MUTATED       26     37      3     17
  DEL PEAK 21(10P15.3) WILD-TYPE    101     82    102    137
D51V13, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                           26                            101
  CLUS_2                           37                             82
  CLUS_3                            3                            102
  CLUS_4                           17                            137
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10P15.3) MUTATED        4      8     12      1     54      4
  DEL PEAK 21(10P15.3) WILD-TYPE     95     69    106     55      9     88
D51V14, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                            4                             95
  CLUS_2                            8                             69
  CLUS_3                           12                            106
  CLUS_4                            1                             55
  CLUS_5                           54                              9
  CLUS_6                            4                             88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 22(10P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P13) MUTATED      139     63    125     83
  DEL PEAK 22(10P13) WILD-TYPE     19     33     12     34
D52V1, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        139                           19
  CLUS_2                         63                           33
  CLUS_3                        125                           12
  CLUS_4                         83                           34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P13) MUTATED      129     58     89    134
  DEL PEAK 22(10P13) WILD-TYPE     19     44     11     24
D52V2, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        129                           19
  CLUS_2                         58                           44
  CLUS_3                         89                           11
  CLUS_4                        134                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P13) MUTATED      129    143     69    105
  DEL PEAK 22(10P13) WILD-TYPE     14     44     21     21
D52V3, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        129                           14
  CLUS_2                        143                           44
  CLUS_3                         69                           21
  CLUS_4                        105                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P13) MUTATED      223    108    115
  DEL PEAK 22(10P13) WILD-TYPE     70     16     14
D52V4, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        223                           70
  CLUS_2                        108                           16
  CLUS_3                        115                           14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P13) MUTATED      471     23     59
  DEL PEAK 22(10P13) WILD-TYPE     58    447     32
D52V5, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        471                           58
  CLUS_2                         23                          447
  CLUS_3                         59                           32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P13) MUTATED      162      6     27      7
  DEL PEAK 22(10P13) WILD-TYPE     15    219     61    153
D52V6, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        162                           15
  CLUS_2                          6                          219
  CLUS_3                         27                           61
  CLUS_4                          7                          153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P13) MUTATED       88     45     73     37
  DEL PEAK 22(10P13) WILD-TYPE    125    123     83     72
D52V7, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                         88                          125
  CLUS_2                         45                          123
  CLUS_3                         73                           83
  CLUS_4                         37                           72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P13) MUTATED       99    108     36
  DEL PEAK 22(10P13) WILD-TYPE    135    146    122
D52V8, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                         99                          135
  CLUS_2                        108                          146
  CLUS_3                         36                          122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P13) MUTATED      186     20      3
  DEL PEAK 22(10P13) WILD-TYPE     58    169    224
D52V9, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        186                           58
  CLUS_2                         20                          169
  CLUS_3                          3                          224
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P13) MUTATED      178      9     22
  DEL PEAK 22(10P13) WILD-TYPE     25    181    245
D52V10, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        178                           25
  CLUS_2                          9                          181
  CLUS_3                         22                          245
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P13) MUTATED       32     26      6     18
  DEL PEAK 22(10P13) WILD-TYPE    108     81     76    162
D52V11, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                         32                          108
  CLUS_2                         26                           81
  CLUS_3                          6                           76
  CLUS_4                         18                          162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P13) MUTATED       11     11     60
  DEL PEAK 22(10P13) WILD-TYPE    211    173     43
D52V12, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                         11                          211
  CLUS_2                         11                          173
  CLUS_3                         60                           43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P13) MUTATED       26     37      3     16
  DEL PEAK 22(10P13) WILD-TYPE    101     82    102    138
D52V13, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                         26                          101
  CLUS_2                         37                           82
  CLUS_3                          3                          102
  CLUS_4                         16                          138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(10P13) MUTATED        4      7     11      1     55      4
  DEL PEAK 22(10P13) WILD-TYPE     95     70    107     55      8     88
D52V14, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                          4                           95
  CLUS_2                          7                           70
  CLUS_3                         11                          107
  CLUS_4                          1                           55
  CLUS_5                         55                            8
  CLUS_6                          4                           88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 23(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED      146     76    132     95
  DEL PEAK 23(10Q23.31) WILD-TYPE     12     20      5     22
D53V1, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                           146                              12
  CLUS_2                            76                              20
  CLUS_3                           132                               5
  CLUS_4                            95                              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED      132     75     98    144
  DEL PEAK 23(10Q23.31) WILD-TYPE     16     27      2     14
D53V2, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                           132                              16
  CLUS_2                            75                              27
  CLUS_3                            98                               2
  CLUS_4                           144                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED      135    162     75    113
  DEL PEAK 23(10Q23.31) WILD-TYPE      8     25     15     13
D53V3, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                           135                               8
  CLUS_2                           162                              25
  CLUS_3                            75                              15
  CLUS_4                           113                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED      248    115    122
  DEL PEAK 23(10Q23.31) WILD-TYPE     45      9      7
D53V4, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                           248                              45
  CLUS_2                           115                               9
  CLUS_3                           122                               7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED      496     63     69
  DEL PEAK 23(10Q23.31) WILD-TYPE     33    407     22
D53V5, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                           496                              33
  CLUS_2                            63                             407
  CLUS_3                            69                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED      169     37     27      8
  DEL PEAK 23(10Q23.31) WILD-TYPE      8    188     61    152
D53V6, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                           169                               8
  CLUS_2                            37                             188
  CLUS_3                            27                              61
  CLUS_4                             8                             152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED      105     51     91     41
  DEL PEAK 23(10Q23.31) WILD-TYPE    108    117     65     68
D53V7, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                           105                             108
  CLUS_2                            51                             117
  CLUS_3                            91                              65
  CLUS_4                            41                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED      123    123     42
  DEL PEAK 23(10Q23.31) WILD-TYPE    111    131    116
D53V8, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                           123                             111
  CLUS_2                           123                             131
  CLUS_3                            42                             116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED      202     26     20
  DEL PEAK 23(10Q23.31) WILD-TYPE     42    163    207
D53V9, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                           202                              42
  CLUS_2                            26                             163
  CLUS_3                            20                             207
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED      186     32     30
  DEL PEAK 23(10Q23.31) WILD-TYPE     17    158    237
D53V10, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                           186                              17
  CLUS_2                            32                             158
  CLUS_3                            30                             237
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED       39     37      9     29
  DEL PEAK 23(10Q23.31) WILD-TYPE    101     70     73    151
D53V11, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            39                             101
  CLUS_2                            37                              70
  CLUS_3                             9                              73
  CLUS_4                            29                             151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       24     18     72
  DEL PEAK 23(10Q23.31) WILD-TYPE    198    166     31
D53V12, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            24                             198
  CLUS_2                            18                             166
  CLUS_3                            72                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED       36     46     10     22
  DEL PEAK 23(10Q23.31) WILD-TYPE     91     73     95    132
D53V13, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            36                              91
  CLUS_2                            46                              73
  CLUS_3                            10                              95
  CLUS_4                            22                             132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10Q23.31) MUTATED       11     16     14      2     56     15
  DEL PEAK 23(10Q23.31) WILD-TYPE     88     61    104     54      7     77
D53V14, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            11                              88
  CLUS_2                            16                              61
  CLUS_3                            14                             104
  CLUS_4                             2                              54
  CLUS_5                            56                               7
  CLUS_6                            15                              77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 24(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q26.3) MUTATED      145     75    135     95
  DEL PEAK 24(10Q26.3) WILD-TYPE     13     21      2     22
D54V1, multiclass
        clus
vv       DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE
  CLUS_1                          145                             13
  CLUS_2                           75                             21
  CLUS_3                          135                              2
  CLUS_4                           95                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q26.3) MUTATED      132     77     97    144
  DEL PEAK 24(10Q26.3) WILD-TYPE     16     25      3     14
D54V2, multiclass
        clus
vv       DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE
  CLUS_1                          132                             16
  CLUS_2                           77                             25
  CLUS_3                           97                              3
  CLUS_4                          144                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q26.3) MUTATED      133    166     74    113
  DEL PEAK 24(10Q26.3) WILD-TYPE     10     21     16     13
D54V3, multiclass
        clus
vv       DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE
  CLUS_1                          133                             10
  CLUS_2                          166                             21
  CLUS_3                           74                             16
  CLUS_4                          113                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q26.3) MUTATED      252    109    125
  DEL PEAK 24(10Q26.3) WILD-TYPE     41     15      4
D54V4, multiclass
        clus
vv       DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE
  CLUS_1                          252                             41
  CLUS_2                          109                             15
  CLUS_3                          125                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q26.3) MUTATED      499     98     68
  DEL PEAK 24(10Q26.3) WILD-TYPE     30    372     23
D54V5, multiclass
        clus
vv       DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE
  CLUS_1                          499                             30
  CLUS_2                           98                            372
  CLUS_3                           68                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q26.3) MUTATED      169     70     30      9
  DEL PEAK 24(10Q26.3) WILD-TYPE      8    155     58    151
D54V6, multiclass
        clus
vv       DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE
  CLUS_1                          169                              8
  CLUS_2                           70                            155
  CLUS_3                           30                             58
  CLUS_4                            9                            151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q26.3) MUTATED      114     61     94     48
  DEL PEAK 24(10Q26.3) WILD-TYPE     99    107     62     61
D54V7, multiclass
        clus
vv       DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE
  CLUS_1                          114                             99
  CLUS_2                           61                            107
  CLUS_3                           94                             62
  CLUS_4                           48                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q26.3) MUTATED      133    133     51
  DEL PEAK 24(10Q26.3) WILD-TYPE    101    121    107
D54V8, multiclass
        clus
vv       DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE
  CLUS_1                          133                            101
  CLUS_2                          133                            121
  CLUS_3                           51                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q26.3) MUTATED      207     36     41
  DEL PEAK 24(10Q26.3) WILD-TYPE     37    153    186
D54V9, multiclass
        clus
vv       DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE
  CLUS_1                          207                             37
  CLUS_2                           36                            153
  CLUS_3                           41                            186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q26.3) MUTATED      185     59     40
  DEL PEAK 24(10Q26.3) WILD-TYPE     18    131    227
D54V10, multiclass
        clus
vv       DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE
  CLUS_1                          185                             18
  CLUS_2                           59                            131
  CLUS_3                           40                            227
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q26.3) MUTATED       55     46     11     38
  DEL PEAK 24(10Q26.3) WILD-TYPE     85     61     71    142
D54V11, multiclass
        clus
vv       DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE
  CLUS_1                           55                             85
  CLUS_2                           46                             61
  CLUS_3                           11                             71
  CLUS_4                           38                            142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q26.3) MUTATED       49     28     73
  DEL PEAK 24(10Q26.3) WILD-TYPE    173    156     30
D54V12, multiclass
        clus
vv       DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE
  CLUS_1                           49                            173
  CLUS_2                           28                            156
  CLUS_3                           73                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q26.3) MUTATED       56     51     12     31
  DEL PEAK 24(10Q26.3) WILD-TYPE     71     68     93    123
D54V13, multiclass
        clus
vv       DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE
  CLUS_1                           56                             71
  CLUS_2                           51                             68
  CLUS_3                           12                             93
  CLUS_4                           31                            123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10Q26.3) MUTATED       28     23     20      3     55     21
  DEL PEAK 24(10Q26.3) WILD-TYPE     71     54     98     53      8     71
D54V14, multiclass
        clus
vv       DEL PEAK 24(10Q26.3) MUTATED DEL PEAK 24(10Q26.3) WILD-TYPE
  CLUS_1                           28                             71
  CLUS_2                           23                             54
  CLUS_3                           20                             98
  CLUS_4                            3                             53
  CLUS_5                           55                              8
  CLUS_6                           21                             71
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 25(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11P15.5) MUTATED       32     42     12     32
  DEL PEAK 25(11P15.5) WILD-TYPE    126     54    125     85
D55V1, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           32                            126
  CLUS_2                           42                             54
  CLUS_3                           12                            125
  CLUS_4                           32                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11P15.5) MUTATED       30     48      9     31
  DEL PEAK 25(11P15.5) WILD-TYPE    118     54     91    127
D55V2, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           30                            118
  CLUS_2                           48                             54
  CLUS_3                            9                             91
  CLUS_4                           31                            127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11P15.5) MUTATED       27     51     23     24
  DEL PEAK 25(11P15.5) WILD-TYPE    116    136     67    102
D55V3, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           27                            116
  CLUS_2                           51                            136
  CLUS_3                           23                             67
  CLUS_4                           24                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11P15.5) MUTATED       84     23     18
  DEL PEAK 25(11P15.5) WILD-TYPE    209    101    111
D55V4, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           84                            209
  CLUS_2                           23                            101
  CLUS_3                           18                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11P15.5) MUTATED       89    104     41
  DEL PEAK 25(11P15.5) WILD-TYPE    440    366     50
D55V5, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           89                            440
  CLUS_2                          104                            366
  CLUS_3                           41                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11P15.5) MUTATED       23     89     11      1
  DEL PEAK 25(11P15.5) WILD-TYPE    154    136     77    159
D55V6, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           23                            154
  CLUS_2                           89                            136
  CLUS_3                           11                             77
  CLUS_4                            1                            159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11P15.5) MUTATED       34     29     35     30
  DEL PEAK 25(11P15.5) WILD-TYPE    179    139    121     79
D55V7, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           34                            179
  CLUS_2                           29                            139
  CLUS_3                           35                            121
  CLUS_4                           30                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11P15.5) MUTATED       47     49     32
  DEL PEAK 25(11P15.5) WILD-TYPE    187    205    126
D55V8, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           47                            187
  CLUS_2                           49                            205
  CLUS_3                           32                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11P15.5) MUTATED       63     31     44
  DEL PEAK 25(11P15.5) WILD-TYPE    181    158    183
D55V9, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           63                            181
  CLUS_2                           31                            158
  CLUS_3                           44                            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11P15.5) MUTATED       35     72     31
  DEL PEAK 25(11P15.5) WILD-TYPE    168    118    236
D55V10, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           35                            168
  CLUS_2                           72                            118
  CLUS_3                           31                            236
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11P15.5) MUTATED       24     40      7     34
  DEL PEAK 25(11P15.5) WILD-TYPE    116     67     75    146
D55V11, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           24                            116
  CLUS_2                           40                             67
  CLUS_3                            7                             75
  CLUS_4                           34                            146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11P15.5) MUTATED       43     29     33
  DEL PEAK 25(11P15.5) WILD-TYPE    179    155     70
D55V12, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           43                            179
  CLUS_2                           29                            155
  CLUS_3                           33                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11P15.5) MUTATED       35     30     11     28
  DEL PEAK 25(11P15.5) WILD-TYPE     92     89     94    126
D55V13, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           35                             92
  CLUS_2                           30                             89
  CLUS_3                           11                             94
  CLUS_4                           28                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11P15.5) MUTATED       22     32     19      0      9     22
  DEL PEAK 25(11P15.5) WILD-TYPE     77     45     99     56     54     70
D55V14, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           22                             77
  CLUS_2                           32                             45
  CLUS_3                           19                             99
  CLUS_4                            0                             56
  CLUS_5                            9                             54
  CLUS_6                           22                             70
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 26(11P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11P15.1) MUTATED       28     35      7     24
  DEL PEAK 26(11P15.1) WILD-TYPE    130     61    130     93
D56V1, multiclass
        clus
vv       DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE
  CLUS_1                           28                            130
  CLUS_2                           35                             61
  CLUS_3                            7                            130
  CLUS_4                           24                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11P15.1) MUTATED       27     37      4     26
  DEL PEAK 26(11P15.1) WILD-TYPE    121     65     96    132
D56V2, multiclass
        clus
vv       DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE
  CLUS_1                           27                            121
  CLUS_2                           37                             65
  CLUS_3                            4                             96
  CLUS_4                           26                            132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11P15.1) MUTATED       22     38     17     23
  DEL PEAK 26(11P15.1) WILD-TYPE    121    149     73    103
D56V3, multiclass
        clus
vv       DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE
  CLUS_1                           22                            121
  CLUS_2                           38                            149
  CLUS_3                           17                             73
  CLUS_4                           23                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.1) MUTATED       63     21     16
  DEL PEAK 26(11P15.1) WILD-TYPE    230    103    113
D56V4, multiclass
        clus
vv       DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE
  CLUS_1                           63                            230
  CLUS_2                           21                            103
  CLUS_3                           16                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.1) MUTATED       73     65     38
  DEL PEAK 26(11P15.1) WILD-TYPE    456    405     53
D56V5, multiclass
        clus
vv       DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE
  CLUS_1                           73                            456
  CLUS_2                           65                            405
  CLUS_3                           38                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11P15.1) MUTATED       21     57      9      1
  DEL PEAK 26(11P15.1) WILD-TYPE    156    168     79    159
D56V6, multiclass
        clus
vv       DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE
  CLUS_1                           21                            156
  CLUS_2                           57                            168
  CLUS_3                            9                             79
  CLUS_4                            1                            159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11P15.1) MUTATED       22     21     28     20
  DEL PEAK 26(11P15.1) WILD-TYPE    191    147    128     89
D56V7, multiclass
        clus
vv       DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE
  CLUS_1                           22                            191
  CLUS_2                           21                            147
  CLUS_3                           28                            128
  CLUS_4                           20                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.1) MUTATED       36     31     24
  DEL PEAK 26(11P15.1) WILD-TYPE    198    223    134
D56V8, multiclass
        clus
vv       DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE
  CLUS_1                           36                            198
  CLUS_2                           31                            223
  CLUS_3                           24                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.1) MUTATED       58     18     24
  DEL PEAK 26(11P15.1) WILD-TYPE    186    171    203
D56V9, multiclass
        clus
vv       DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE
  CLUS_1                           58                            186
  CLUS_2                           18                            171
  CLUS_3                           24                            203
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.1) MUTATED       34     49     17
  DEL PEAK 26(11P15.1) WILD-TYPE    169    141    250
D56V10, multiclass
        clus
vv       DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE
  CLUS_1                           34                            169
  CLUS_2                           49                            141
  CLUS_3                           17                            250
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11P15.1) MUTATED       16     32      5     19
  DEL PEAK 26(11P15.1) WILD-TYPE    124     75     77    161
D56V11, multiclass
        clus
vv       DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE
  CLUS_1                           16                            124
  CLUS_2                           32                             75
  CLUS_3                            5                             77
  CLUS_4                           19                            161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.1) MUTATED       27     16     29
  DEL PEAK 26(11P15.1) WILD-TYPE    195    168     74
D56V12, multiclass
        clus
vv       DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE
  CLUS_1                           27                            195
  CLUS_2                           16                            168
  CLUS_3                           29                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11P15.1) MUTATED       22     27      6     16
  DEL PEAK 26(11P15.1) WILD-TYPE    105     92     99    138
D56V13, multiclass
        clus
vv       DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE
  CLUS_1                           22                            105
  CLUS_2                           27                             92
  CLUS_3                            6                             99
  CLUS_4                           16                            138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(11P15.1) MUTATED       13     29     11      0      9      9
  DEL PEAK 26(11P15.1) WILD-TYPE     86     48    107     56     54     83
D56V14, multiclass
        clus
vv       DEL PEAK 26(11P15.1) MUTATED DEL PEAK 26(11P15.1) WILD-TYPE
  CLUS_1                           13                             86
  CLUS_2                           29                             48
  CLUS_3                           11                            107
  CLUS_4                            0                             56
  CLUS_5                            9                             54
  CLUS_6                            9                             83
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 27(11P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11P11.2) MUTATED       27     35      9     24
  DEL PEAK 27(11P11.2) WILD-TYPE    131     61    128     93
D57V1, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           27                            131
  CLUS_2                           35                             61
  CLUS_3                            9                            128
  CLUS_4                           24                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11P11.2) MUTATED       27     36      5     27
  DEL PEAK 27(11P11.2) WILD-TYPE    121     66     95    131
D57V2, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           27                            121
  CLUS_2                           36                             66
  CLUS_3                            5                             95
  CLUS_4                           27                            131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11P11.2) MUTATED       22     38     15     26
  DEL PEAK 27(11P11.2) WILD-TYPE    121    149     75    100
D57V3, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           22                            121
  CLUS_2                           38                            149
  CLUS_3                           15                             75
  CLUS_4                           26                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED       65     22     14
  DEL PEAK 27(11P11.2) WILD-TYPE    228    102    115
D57V4, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           65                            228
  CLUS_2                           22                            102
  CLUS_3                           14                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED       78     42     39
  DEL PEAK 27(11P11.2) WILD-TYPE    451    428     52
D57V5, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           78                            451
  CLUS_2                           42                            428
  CLUS_3                           39                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11P11.2) MUTATED       24     39      7      0
  DEL PEAK 27(11P11.2) WILD-TYPE    153    186     81    160
D57V6, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           24                            153
  CLUS_2                           39                            186
  CLUS_3                            7                             81
  CLUS_4                            0                            160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11P11.2) MUTATED       22     16     27     13
  DEL PEAK 27(11P11.2) WILD-TYPE    191    152    129     96
D57V7, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           22                            191
  CLUS_2                           16                            152
  CLUS_3                           27                            129
  CLUS_4                           13                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED       32     26     20
  DEL PEAK 27(11P11.2) WILD-TYPE    202    228    138
D57V8, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           32                            202
  CLUS_2                           26                            228
  CLUS_3                           20                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED       53     12     15
  DEL PEAK 27(11P11.2) WILD-TYPE    191    177    212
D57V9, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           53                            191
  CLUS_2                           12                            177
  CLUS_3                           15                            212
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED       34     35     11
  DEL PEAK 27(11P11.2) WILD-TYPE    169    155    256
D57V10, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           34                            169
  CLUS_2                           35                            155
  CLUS_3                           11                            256
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11P11.2) MUTATED       11     24      4     15
  DEL PEAK 27(11P11.2) WILD-TYPE    129     83     78    165
D57V11, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           11                            129
  CLUS_2                           24                             83
  CLUS_3                            4                             78
  CLUS_4                           15                            165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED       18     10     26
  DEL PEAK 27(11P11.2) WILD-TYPE    204    174     77
D57V12, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           18                            204
  CLUS_2                           10                            174
  CLUS_3                           26                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11P11.2) MUTATED       19     18      4     12
  DEL PEAK 27(11P11.2) WILD-TYPE    108    101    101    142
D57V13, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           19                            108
  CLUS_2                           18                            101
  CLUS_3                            4                            101
  CLUS_4                           12                            142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(11P11.2) MUTATED        8     20      9      0     11      5
  DEL PEAK 27(11P11.2) WILD-TYPE     91     57    109     56     52     87
D57V14, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            8                             91
  CLUS_2                           20                             57
  CLUS_3                            9                            109
  CLUS_4                            0                             56
  CLUS_5                           11                             52
  CLUS_6                            5                             87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 28(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12P13.1) MUTATED       18     16     10     20
  DEL PEAK 28(12P13.1) WILD-TYPE    140     80    127     97
D58V1, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           18                            140
  CLUS_2                           16                             80
  CLUS_3                           10                            127
  CLUS_4                           20                             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12P13.1) MUTATED       17     20      5     22
  DEL PEAK 28(12P13.1) WILD-TYPE    131     82     95    136
D58V2, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           17                            131
  CLUS_2                           20                             82
  CLUS_3                            5                             95
  CLUS_4                           22                            136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12P13.1) MUTATED       18     26     15     12
  DEL PEAK 28(12P13.1) WILD-TYPE    125    161     75    114
D58V3, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           18                            125
  CLUS_2                           26                            161
  CLUS_3                           15                             75
  CLUS_4                           12                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12P13.1) MUTATED       45     12     14
  DEL PEAK 28(12P13.1) WILD-TYPE    248    112    115
D58V4, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           45                            248
  CLUS_2                           12                            112
  CLUS_3                           14                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12P13.1) MUTATED       50     42     18
  DEL PEAK 28(12P13.1) WILD-TYPE    479    428     73
D58V5, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           50                            479
  CLUS_2                           42                            428
  CLUS_3                           18                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12P13.1) MUTATED       15     29      5      5
  DEL PEAK 28(12P13.1) WILD-TYPE    162    196     83    155
D58V6, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           15                            162
  CLUS_2                           29                            196
  CLUS_3                            5                             83
  CLUS_4                            5                            155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12P13.1) MUTATED       18     12     18      8
  DEL PEAK 28(12P13.1) WILD-TYPE    195    156    138    101
D58V7, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           18                            195
  CLUS_2                           12                            156
  CLUS_3                           18                            138
  CLUS_4                            8                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12P13.1) MUTATED       25     19     12
  DEL PEAK 28(12P13.1) WILD-TYPE    209    235    146
D58V8, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           25                            209
  CLUS_2                           19                            235
  CLUS_3                           12                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12P13.1) MUTATED       27     11     16
  DEL PEAK 28(12P13.1) WILD-TYPE    217    178    211
D58V9, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           27                            217
  CLUS_2                           11                            178
  CLUS_3                           16                            211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12P13.1) MUTATED       18     25     11
  DEL PEAK 28(12P13.1) WILD-TYPE    185    165    256
D58V10, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           18                            185
  CLUS_2                           25                            165
  CLUS_3                           11                            256
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12P13.1) MUTATED        7     16      5     10
  DEL PEAK 28(12P13.1) WILD-TYPE    133     91     77    170
D58V11, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                            7                            133
  CLUS_2                           16                             91
  CLUS_3                            5                             77
  CLUS_4                           10                            170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12P13.1) MUTATED       13     11     14
  DEL PEAK 28(12P13.1) WILD-TYPE    209    173     89
D58V12, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           13                            209
  CLUS_2                           11                            173
  CLUS_3                           14                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12P13.1) MUTATED       13     13      5      7
  DEL PEAK 28(12P13.1) WILD-TYPE    114    106    100    147
D58V13, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           13                            114
  CLUS_2                           13                            106
  CLUS_3                            5                            100
  CLUS_4                            7                            147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12P13.1) MUTATED       11     10      6      1      3      7
  DEL PEAK 28(12P13.1) WILD-TYPE     88     67    112     55     60     85
D58V14, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           11                             88
  CLUS_2                           10                             67
  CLUS_3                            6                            112
  CLUS_4                            1                             55
  CLUS_5                            3                             60
  CLUS_6                            7                             85
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 29(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q12) MUTATED       18     19     10     21
  DEL PEAK 29(12Q12) WILD-TYPE    140     77    127     96
D59V1, multiclass
        clus
vv       DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE
  CLUS_1                         18                          140
  CLUS_2                         19                           77
  CLUS_3                         10                          127
  CLUS_4                         21                           96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q12) MUTATED       19     26      6     17
  DEL PEAK 29(12Q12) WILD-TYPE    129     76     94    141
D59V2, multiclass
        clus
vv       DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE
  CLUS_1                         19                          129
  CLUS_2                         26                           76
  CLUS_3                          6                           94
  CLUS_4                         17                          141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q12) MUTATED       15     31     12     15
  DEL PEAK 29(12Q12) WILD-TYPE    128    156     78    111
D59V3, multiclass
        clus
vv       DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE
  CLUS_1                         15                          128
  CLUS_2                         31                          156
  CLUS_3                         12                           78
  CLUS_4                         15                          111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12Q12) MUTATED       47     10     16
  DEL PEAK 29(12Q12) WILD-TYPE    246    114    113
D59V4, multiclass
        clus
vv       DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE
  CLUS_1                         47                          246
  CLUS_2                         10                          114
  CLUS_3                         16                          113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12Q12) MUTATED       53     69     25
  DEL PEAK 29(12Q12) WILD-TYPE    476    401     66
D59V5, multiclass
        clus
vv       DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE
  CLUS_1                         53                          476
  CLUS_2                         69                          401
  CLUS_3                         25                           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q12) MUTATED       17     56      8      7
  DEL PEAK 29(12Q12) WILD-TYPE    160    169     80    153
D59V6, multiclass
        clus
vv       DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE
  CLUS_1                         17                          160
  CLUS_2                         56                          169
  CLUS_3                          8                           80
  CLUS_4                          7                          153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q12) MUTATED       30     21     22     12
  DEL PEAK 29(12Q12) WILD-TYPE    183    147    134     97
D59V7, multiclass
        clus
vv       DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE
  CLUS_1                         30                          183
  CLUS_2                         21                          147
  CLUS_3                         22                          134
  CLUS_4                         12                           97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12Q12) MUTATED       30     35     20
  DEL PEAK 29(12Q12) WILD-TYPE    204    219    138
D59V8, multiclass
        clus
vv       DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE
  CLUS_1                         30                          204
  CLUS_2                         35                          219
  CLUS_3                         20                          138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12Q12) MUTATED       32     25     27
  DEL PEAK 29(12Q12) WILD-TYPE    212    164    200
D59V9, multiclass
        clus
vv       DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE
  CLUS_1                         32                          212
  CLUS_2                         25                          164
  CLUS_3                         27                          200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12Q12) MUTATED       17     42     25
  DEL PEAK 29(12Q12) WILD-TYPE    186    148    242
D59V10, multiclass
        clus
vv       DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE
  CLUS_1                         17                          186
  CLUS_2                         42                          148
  CLUS_3                         25                          242
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q12) MUTATED       13     27      8     22
  DEL PEAK 29(12Q12) WILD-TYPE    127     80     74    158
D59V11, multiclass
        clus
vv       DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE
  CLUS_1                         13                          127
  CLUS_2                         27                           80
  CLUS_3                          8                           74
  CLUS_4                         22                          158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12Q12) MUTATED       29     23     18
  DEL PEAK 29(12Q12) WILD-TYPE    193    161     85
D59V12, multiclass
        clus
vv       DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE
  CLUS_1                         29                          193
  CLUS_2                         23                          161
  CLUS_3                         18                           85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q12) MUTATED       17     22     10     21
  DEL PEAK 29(12Q12) WILD-TYPE    110     97     95    133
D59V13, multiclass
        clus
vv       DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE
  CLUS_1                         17                          110
  CLUS_2                         22                           97
  CLUS_3                         10                           95
  CLUS_4                         21                          133
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(12Q12) MUTATED       15     22     13      3      2     15
  DEL PEAK 29(12Q12) WILD-TYPE     84     55    105     53     61     77
D59V14, multiclass
        clus
vv       DEL PEAK 29(12Q12) MUTATED DEL PEAK 29(12Q12) WILD-TYPE
  CLUS_1                         15                           84
  CLUS_2                         22                           55
  CLUS_3                         13                          105
  CLUS_4                          3                           53
  CLUS_5                          2                           61
  CLUS_6                         15                           77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 30(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q15) MUTATED       22     21      7     19
  DEL PEAK 30(12Q15) WILD-TYPE    136     75    130     98
D60V1, multiclass
        clus
vv       DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE
  CLUS_1                         22                          136
  CLUS_2                         21                           75
  CLUS_3                          7                          130
  CLUS_4                         19                           98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q15) MUTATED       20     22      4     23
  DEL PEAK 30(12Q15) WILD-TYPE    128     80     96    135
D60V2, multiclass
        clus
vv       DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE
  CLUS_1                         20                          128
  CLUS_2                         22                           80
  CLUS_3                          4                           96
  CLUS_4                         23                          135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q15) MUTATED       14     32     11     19
  DEL PEAK 30(12Q15) WILD-TYPE    129    155     79    107
D60V3, multiclass
        clus
vv       DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE
  CLUS_1                         14                          129
  CLUS_2                         32                          155
  CLUS_3                         11                           79
  CLUS_4                         19                          107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q15) MUTATED       45     13     18
  DEL PEAK 30(12Q15) WILD-TYPE    248    111    111
D60V4, multiclass
        clus
vv       DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE
  CLUS_1                         45                          248
  CLUS_2                         13                          111
  CLUS_3                         18                          111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q15) MUTATED       57     58     27
  DEL PEAK 30(12Q15) WILD-TYPE    472    412     64
D60V5, multiclass
        clus
vv       DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE
  CLUS_1                         57                          472
  CLUS_2                         58                          412
  CLUS_3                         27                           64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q15) MUTATED       16     54      7      5
  DEL PEAK 30(12Q15) WILD-TYPE    161    171     81    155
D60V6, multiclass
        clus
vv       DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE
  CLUS_1                         16                          161
  CLUS_2                         54                          171
  CLUS_3                          7                           81
  CLUS_4                          5                          155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q15) MUTATED       30     19     19     10
  DEL PEAK 30(12Q15) WILD-TYPE    183    149    137     99
D60V7, multiclass
        clus
vv       DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE
  CLUS_1                         30                          183
  CLUS_2                         19                          149
  CLUS_3                         19                          137
  CLUS_4                         10                           99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q15) MUTATED       30     30     18
  DEL PEAK 30(12Q15) WILD-TYPE    204    224    140
D60V8, multiclass
        clus
vv       DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE
  CLUS_1                         30                          204
  CLUS_2                         30                          224
  CLUS_3                         18                          140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q15) MUTATED       33     21     26
  DEL PEAK 30(12Q15) WILD-TYPE    211    168    201
D60V9, multiclass
        clus
vv       DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE
  CLUS_1                         33                          211
  CLUS_2                         21                          168
  CLUS_3                         26                          201
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q15) MUTATED       18     42     20
  DEL PEAK 30(12Q15) WILD-TYPE    185    148    247
D60V10, multiclass
        clus
vv       DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE
  CLUS_1                         18                          185
  CLUS_2                         42                          148
  CLUS_3                         20                          247
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q15) MUTATED       11     27      6     19
  DEL PEAK 30(12Q15) WILD-TYPE    129     80     76    161
D60V11, multiclass
        clus
vv       DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE
  CLUS_1                         11                          129
  CLUS_2                         27                           80
  CLUS_3                          6                           76
  CLUS_4                         19                          161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q15) MUTATED       27     19     17
  DEL PEAK 30(12Q15) WILD-TYPE    195    165     86
D60V12, multiclass
        clus
vv       DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE
  CLUS_1                         27                          195
  CLUS_2                         19                          165
  CLUS_3                         17                           86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q15) MUTATED       17     20      8     18
  DEL PEAK 30(12Q15) WILD-TYPE    110     99     97    136
D60V13, multiclass
        clus
vv       DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE
  CLUS_1                         17                          110
  CLUS_2                         20                           99
  CLUS_3                          8                           97
  CLUS_4                         18                          136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(12Q15) MUTATED       16     23     12      1      0     11
  DEL PEAK 30(12Q15) WILD-TYPE     83     54    106     55     63     81
D60V14, multiclass
        clus
vv       DEL PEAK 30(12Q15) MUTATED DEL PEAK 30(12Q15) WILD-TYPE
  CLUS_1                         16                           83
  CLUS_2                         23                           54
  CLUS_3                         12                          106
  CLUS_4                          1                           55
  CLUS_5                          0                           63
  CLUS_6                         11                           81
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 31(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q14.2) MUTATED       82     45     32     56
  DEL PEAK 31(13Q14.2) WILD-TYPE     76     51    105     61
D61V1, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           82                             76
  CLUS_2                           45                             51
  CLUS_3                           32                            105
  CLUS_4                           56                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q14.2) MUTATED       68     50     21     76
  DEL PEAK 31(13Q14.2) WILD-TYPE     80     52     79     82
D61V2, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           68                             80
  CLUS_2                           50                             52
  CLUS_3                           21                             79
  CLUS_4                           76                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q14.2) MUTATED       67     76     42     44
  DEL PEAK 31(13Q14.2) WILD-TYPE     76    111     48     82
D61V3, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           67                             76
  CLUS_2                           76                            111
  CLUS_3                           42                             48
  CLUS_4                           44                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q14.2) MUTATED      132     52     45
  DEL PEAK 31(13Q14.2) WILD-TYPE    161     72     84
D61V4, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                          132                            161
  CLUS_2                           52                             72
  CLUS_3                           45                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q14.2) MUTATED      208    136     39
  DEL PEAK 31(13Q14.2) WILD-TYPE    321    334     52
D61V5, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                          208                            321
  CLUS_2                          136                            334
  CLUS_3                           39                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q14.2) MUTATED       61     81     19     29
  DEL PEAK 31(13Q14.2) WILD-TYPE    116    144     69    131
D61V6, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           61                            116
  CLUS_2                           81                            144
  CLUS_3                           19                             69
  CLUS_4                           29                            131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q14.2) MUTATED       69     48     58     30
  DEL PEAK 31(13Q14.2) WILD-TYPE    144    120     98     79
D61V7, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           69                            144
  CLUS_2                           48                            120
  CLUS_3                           58                             98
  CLUS_4                           30                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q14.2) MUTATED       80     76     49
  DEL PEAK 31(13Q14.2) WILD-TYPE    154    178    109
D61V8, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           80                            154
  CLUS_2                           76                            178
  CLUS_3                           49                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q14.2) MUTATED       99     40     62
  DEL PEAK 31(13Q14.2) WILD-TYPE    145    149    165
D61V9, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           99                            145
  CLUS_2                           40                            149
  CLUS_3                           62                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q14.2) MUTATED       73     74     54
  DEL PEAK 31(13Q14.2) WILD-TYPE    130    116    213
D61V10, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           73                            130
  CLUS_2                           74                            116
  CLUS_3                           54                            213
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q14.2) MUTATED       38     41     22     40
  DEL PEAK 31(13Q14.2) WILD-TYPE    102     66     60    140
D61V11, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           38                            102
  CLUS_2                           41                             66
  CLUS_3                           22                             60
  CLUS_4                           40                            140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q14.2) MUTATED       66     37     38
  DEL PEAK 31(13Q14.2) WILD-TYPE    156    147     65
D61V12, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           66                            156
  CLUS_2                           37                            147
  CLUS_3                           38                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q14.2) MUTATED       36     41     26     38
  DEL PEAK 31(13Q14.2) WILD-TYPE     91     78     79    116
D61V13, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           36                             91
  CLUS_2                           41                             78
  CLUS_3                           26                             79
  CLUS_4                           38                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(13Q14.2) MUTATED       23     31     25     10     20     32
  DEL PEAK 31(13Q14.2) WILD-TYPE     76     46     93     46     43     60
D61V14, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           23                             76
  CLUS_2                           31                             46
  CLUS_3                           25                             93
  CLUS_4                           10                             46
  CLUS_5                           20                             43
  CLUS_6                           32                             60
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 32(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q22.1) MUTATED       82     40     30     53
  DEL PEAK 32(13Q22.1) WILD-TYPE     76     56    107     64
D62V1, multiclass
        clus
vv       DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE
  CLUS_1                           82                             76
  CLUS_2                           40                             56
  CLUS_3                           30                            107
  CLUS_4                           53                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q22.1) MUTATED       68     45     21     71
  DEL PEAK 32(13Q22.1) WILD-TYPE     80     57     79     87
D62V2, multiclass
        clus
vv       DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE
  CLUS_1                           68                             80
  CLUS_2                           45                             57
  CLUS_3                           21                             79
  CLUS_4                           71                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q22.1) MUTATED       62     76     36     42
  DEL PEAK 32(13Q22.1) WILD-TYPE     81    111     54     84
D62V3, multiclass
        clus
vv       DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE
  CLUS_1                           62                             81
  CLUS_2                           76                            111
  CLUS_3                           36                             54
  CLUS_4                           42                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q22.1) MUTATED      122     50     44
  DEL PEAK 32(13Q22.1) WILD-TYPE    171     74     85
D62V4, multiclass
        clus
vv       DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE
  CLUS_1                          122                            171
  CLUS_2                           50                             74
  CLUS_3                           44                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q22.1) MUTATED      198    127     42
  DEL PEAK 32(13Q22.1) WILD-TYPE    331    343     49
D62V5, multiclass
        clus
vv       DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE
  CLUS_1                          198                            331
  CLUS_2                          127                            343
  CLUS_3                           42                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q22.1) MUTATED       61     73     18     30
  DEL PEAK 32(13Q22.1) WILD-TYPE    116    152     70    130
D62V6, multiclass
        clus
vv       DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE
  CLUS_1                           61                            116
  CLUS_2                           73                            152
  CLUS_3                           18                             70
  CLUS_4                           30                            130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q22.1) MUTATED       61     44     57     30
  DEL PEAK 32(13Q22.1) WILD-TYPE    152    124     99     79
D62V7, multiclass
        clus
vv       DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE
  CLUS_1                           61                            152
  CLUS_2                           44                            124
  CLUS_3                           57                             99
  CLUS_4                           30                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q22.1) MUTATED       72     74     46
  DEL PEAK 32(13Q22.1) WILD-TYPE    162    180    112
D62V8, multiclass
        clus
vv       DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE
  CLUS_1                           72                            162
  CLUS_2                           74                            180
  CLUS_3                           46                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q22.1) MUTATED       93     37     61
  DEL PEAK 32(13Q22.1) WILD-TYPE    151    152    166
D62V9, multiclass
        clus
vv       DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE
  CLUS_1                           93                            151
  CLUS_2                           37                            152
  CLUS_3                           61                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q22.1) MUTATED       71     69     51
  DEL PEAK 32(13Q22.1) WILD-TYPE    132    121    216
D62V10, multiclass
        clus
vv       DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE
  CLUS_1                           71                            132
  CLUS_2                           69                            121
  CLUS_3                           51                            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q22.1) MUTATED       38     40     21     37
  DEL PEAK 32(13Q22.1) WILD-TYPE    102     67     61    143
D62V11, multiclass
        clus
vv       DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE
  CLUS_1                           38                            102
  CLUS_2                           40                             67
  CLUS_3                           21                             61
  CLUS_4                           37                            143
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q22.1) MUTATED       64     34     38
  DEL PEAK 32(13Q22.1) WILD-TYPE    158    150     65
D62V12, multiclass
        clus
vv       DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE
  CLUS_1                           64                            158
  CLUS_2                           34                            150
  CLUS_3                           38                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q22.1) MUTATED       34     39     27     36
  DEL PEAK 32(13Q22.1) WILD-TYPE     93     80     78    118
D62V13, multiclass
        clus
vv       DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE
  CLUS_1                           34                             93
  CLUS_2                           39                             80
  CLUS_3                           27                             78
  CLUS_4                           36                            118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(13Q22.1) MUTATED       22     28     25     10     21     30
  DEL PEAK 32(13Q22.1) WILD-TYPE     77     49     93     46     42     62
D62V14, multiclass
        clus
vv       DEL PEAK 32(13Q22.1) MUTATED DEL PEAK 32(13Q22.1) WILD-TYPE
  CLUS_1                           22                             77
  CLUS_2                           28                             49
  CLUS_3                           25                             93
  CLUS_4                           10                             46
  CLUS_5                           21                             42
  CLUS_6                           30                             62
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 33(14Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(14Q13.1) MUTATED       56     39     21     45
  DEL PEAK 33(14Q13.1) WILD-TYPE    102     57    116     72
D63V1, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           56                            102
  CLUS_2                           39                             57
  CLUS_3                           21                            116
  CLUS_4                           45                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(14Q13.1) MUTATED       49     42     15     55
  DEL PEAK 33(14Q13.1) WILD-TYPE     99     60     85    103
D63V2, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           49                             99
  CLUS_2                           42                             60
  CLUS_3                           15                             85
  CLUS_4                           55                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(14Q13.1) MUTATED       43     65     26     38
  DEL PEAK 33(14Q13.1) WILD-TYPE    100    122     64     88
D63V3, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           43                            100
  CLUS_2                           65                            122
  CLUS_3                           26                             64
  CLUS_4                           38                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(14Q13.1) MUTATED       96     35     41
  DEL PEAK 33(14Q13.1) WILD-TYPE    197     89     88
D63V4, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           96                            197
  CLUS_2                           35                             89
  CLUS_3                           41                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(14Q13.1) MUTATED      164     47     35
  DEL PEAK 33(14Q13.1) WILD-TYPE    365    423     56
D63V5, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                          164                            365
  CLUS_2                           47                            423
  CLUS_3                           35                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(14Q13.1) MUTATED       60     21     17     17
  DEL PEAK 33(14Q13.1) WILD-TYPE    117    204     71    143
D63V6, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           60                            117
  CLUS_2                           21                            204
  CLUS_3                           17                             71
  CLUS_4                           17                            143
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(14Q13.1) MUTATED       41     28     41     19
  DEL PEAK 33(14Q13.1) WILD-TYPE    172    140    115     90
D63V7, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           41                            172
  CLUS_2                           28                            140
  CLUS_3                           41                            115
  CLUS_4                           19                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(14Q13.1) MUTATED       49     55     25
  DEL PEAK 33(14Q13.1) WILD-TYPE    185    199    133
D63V8, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           49                            185
  CLUS_2                           55                            199
  CLUS_3                           25                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(14Q13.1) MUTATED       87     24     16
  DEL PEAK 33(14Q13.1) WILD-TYPE    157    165    211
D63V9, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           87                            157
  CLUS_2                           24                            165
  CLUS_3                           16                            211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(14Q13.1) MUTATED       78     21     28
  DEL PEAK 33(14Q13.1) WILD-TYPE    125    169    239
D63V10, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           78                            125
  CLUS_2                           21                            169
  CLUS_3                           28                            239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(14Q13.1) MUTATED       26     14      9     18
  DEL PEAK 33(14Q13.1) WILD-TYPE    114     93     73    162
D63V11, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           26                            114
  CLUS_2                           14                             93
  CLUS_3                            9                             73
  CLUS_4                           18                            162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(14Q13.1) MUTATED       22     18     27
  DEL PEAK 33(14Q13.1) WILD-TYPE    200    166     76
D63V12, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           22                            200
  CLUS_2                           18                            166
  CLUS_3                           27                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(14Q13.1) MUTATED       17     24      9     17
  DEL PEAK 33(14Q13.1) WILD-TYPE    110     95     96    137
D63V13, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                           17                            110
  CLUS_2                           24                             95
  CLUS_3                            9                             96
  CLUS_4                           17                            137
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(14Q13.1) MUTATED        8     11     11      6     23      8
  DEL PEAK 33(14Q13.1) WILD-TYPE     91     66    107     50     40     84
D63V14, multiclass
        clus
vv       DEL PEAK 33(14Q13.1) MUTATED DEL PEAK 33(14Q13.1) WILD-TYPE
  CLUS_1                            8                             91
  CLUS_2                           11                             66
  CLUS_3                           11                            107
  CLUS_4                            6                             50
  CLUS_5                           23                             40
  CLUS_6                            8                             84
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 34(14Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q24.2) MUTATED       53     43     18     47
  DEL PEAK 34(14Q24.2) WILD-TYPE    105     53    119     70
D64V1, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           53                            105
  CLUS_2                           43                             53
  CLUS_3                           18                            119
  CLUS_4                           47                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q24.2) MUTATED       48     46     14     53
  DEL PEAK 34(14Q24.2) WILD-TYPE    100     56     86    105
D64V2, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           48                            100
  CLUS_2                           46                             56
  CLUS_3                           14                             86
  CLUS_4                           53                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q24.2) MUTATED       36     70     24     37
  DEL PEAK 34(14Q24.2) WILD-TYPE    107    117     66     89
D64V3, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           36                            107
  CLUS_2                           70                            117
  CLUS_3                           24                             66
  CLUS_4                           37                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q24.2) MUTATED      100     32     35
  DEL PEAK 34(14Q24.2) WILD-TYPE    193     92     94
D64V4, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                          100                            193
  CLUS_2                           32                             92
  CLUS_3                           35                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q24.2) MUTATED      150    103     40
  DEL PEAK 34(14Q24.2) WILD-TYPE    379    367     51
D64V5, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                          150                            379
  CLUS_2                          103                            367
  CLUS_3                           40                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q24.2) MUTATED       51     52     22     33
  DEL PEAK 34(14Q24.2) WILD-TYPE    126    173     66    127
D64V6, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           51                            126
  CLUS_2                           52                            173
  CLUS_3                           22                             66
  CLUS_4                           33                            127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q24.2) MUTATED       55     35     54     21
  DEL PEAK 34(14Q24.2) WILD-TYPE    158    133    102     88
D64V7, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           55                            158
  CLUS_2                           35                            133
  CLUS_3                           54                            102
  CLUS_4                           21                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q24.2) MUTATED       65     68     32
  DEL PEAK 34(14Q24.2) WILD-TYPE    169    186    126
D64V8, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           65                            169
  CLUS_2                           68                            186
  CLUS_3                           32                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q24.2) MUTATED       89     38     47
  DEL PEAK 34(14Q24.2) WILD-TYPE    155    151    180
D64V9, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           89                            155
  CLUS_2                           38                            151
  CLUS_3                           47                            180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q24.2) MUTATED       73     51     50
  DEL PEAK 34(14Q24.2) WILD-TYPE    130    139    217
D64V10, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           73                            130
  CLUS_2                           51                            139
  CLUS_3                           50                            217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q24.2) MUTATED       50     20     17     32
  DEL PEAK 34(14Q24.2) WILD-TYPE     90     87     65    148
D64V11, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           50                             90
  CLUS_2                           20                             87
  CLUS_3                           17                             65
  CLUS_4                           32                            148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q24.2) MUTATED       53     31     35
  DEL PEAK 34(14Q24.2) WILD-TYPE    169    153     68
D64V12, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           53                            169
  CLUS_2                           31                            153
  CLUS_3                           35                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q24.2) MUTATED       35     37     24     23
  DEL PEAK 34(14Q24.2) WILD-TYPE     92     82     81    131
D64V13, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           35                             92
  CLUS_2                           37                             82
  CLUS_3                           24                             81
  CLUS_4                           23                            131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(14Q24.2) MUTATED       26     24     18     13     24     14
  DEL PEAK 34(14Q24.2) WILD-TYPE     73     53    100     43     39     78
D64V14, multiclass
        clus
vv       DEL PEAK 34(14Q24.2) MUTATED DEL PEAK 34(14Q24.2) WILD-TYPE
  CLUS_1                           26                             73
  CLUS_2                           24                             53
  CLUS_3                           18                            100
  CLUS_4                           13                             43
  CLUS_5                           24                             39
  CLUS_6                           14                             78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 35(14Q31.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q31.3) MUTATED       53     39     12     43
  DEL PEAK 35(14Q31.3) WILD-TYPE    105     57    125     74
D65V1, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           53                            105
  CLUS_2                           39                             57
  CLUS_3                           12                            125
  CLUS_4                           43                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q31.3) MUTATED       47     41     10     49
  DEL PEAK 35(14Q31.3) WILD-TYPE    101     61     90    109
D65V2, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           47                            101
  CLUS_2                           41                             61
  CLUS_3                           10                             90
  CLUS_4                           49                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q31.3) MUTATED       34     59     26     34
  DEL PEAK 35(14Q31.3) WILD-TYPE    109    128     64     92
D65V3, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           34                            109
  CLUS_2                           59                            128
  CLUS_3                           26                             64
  CLUS_4                           34                             92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q31.3) MUTATED       92     31     30
  DEL PEAK 35(14Q31.3) WILD-TYPE    201     93     99
D65V4, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           92                            201
  CLUS_2                           31                             93
  CLUS_3                           30                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q31.3) MUTATED      142     96     38
  DEL PEAK 35(14Q31.3) WILD-TYPE    387    374     53
D65V5, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                          142                            387
  CLUS_2                           96                            374
  CLUS_3                           38                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q31.3) MUTATED       50     55     20     30
  DEL PEAK 35(14Q31.3) WILD-TYPE    127    170     68    130
D65V6, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           50                            127
  CLUS_2                           55                            170
  CLUS_3                           20                             68
  CLUS_4                           30                            130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q31.3) MUTATED       52     35     51     21
  DEL PEAK 35(14Q31.3) WILD-TYPE    161    133    105     88
D65V7, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           52                            161
  CLUS_2                           35                            133
  CLUS_3                           51                            105
  CLUS_4                           21                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q31.3) MUTATED       64     62     33
  DEL PEAK 35(14Q31.3) WILD-TYPE    170    192    125
D65V8, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           64                            170
  CLUS_2                           62                            192
  CLUS_3                           33                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q31.3) MUTATED       84     38     44
  DEL PEAK 35(14Q31.3) WILD-TYPE    160    151    183
D65V9, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           84                            160
  CLUS_2                           38                            151
  CLUS_3                           44                            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q31.3) MUTATED       69     49     48
  DEL PEAK 35(14Q31.3) WILD-TYPE    134    141    219
D65V10, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           69                            134
  CLUS_2                           49                            141
  CLUS_3                           48                            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q31.3) MUTATED       49     18     16     32
  DEL PEAK 35(14Q31.3) WILD-TYPE     91     89     66    148
D65V11, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           49                             91
  CLUS_2                           18                             89
  CLUS_3                           16                             66
  CLUS_4                           32                            148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q31.3) MUTATED       50     31     34
  DEL PEAK 35(14Q31.3) WILD-TYPE    172    153     69
D65V12, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           50                            172
  CLUS_2                           31                            153
  CLUS_3                           34                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q31.3) MUTATED       34     36     22     23
  DEL PEAK 35(14Q31.3) WILD-TYPE     93     83     83    131
D65V13, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           34                             93
  CLUS_2                           36                             83
  CLUS_3                           22                             83
  CLUS_4                           23                            131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(14Q31.3) MUTATED       25     25     18     10     23     14
  DEL PEAK 35(14Q31.3) WILD-TYPE     74     52    100     46     40     78
D65V14, multiclass
        clus
vv       DEL PEAK 35(14Q31.3) MUTATED DEL PEAK 35(14Q31.3) WILD-TYPE
  CLUS_1                           25                             74
  CLUS_2                           25                             52
  CLUS_3                           18                            100
  CLUS_4                           10                             46
  CLUS_5                           23                             40
  CLUS_6                           14                             78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 36(15Q14) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q14) MUTATED       37     36     20     45
  DEL PEAK 36(15Q14) WILD-TYPE    121     60    117     72
D66V1, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         37                          121
  CLUS_2                         36                           60
  CLUS_3                         20                          117
  CLUS_4                         45                           72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q14) MUTATED       34     47     12     45
  DEL PEAK 36(15Q14) WILD-TYPE    114     55     88    113
D66V2, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         34                          114
  CLUS_2                         47                           55
  CLUS_3                         12                           88
  CLUS_4                         45                          113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q14) MUTATED       30     66     25     22
  DEL PEAK 36(15Q14) WILD-TYPE    113    121     65    104
D66V3, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         30                          113
  CLUS_2                         66                          121
  CLUS_3                         25                           65
  CLUS_4                         22                          104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED       95     15     33
  DEL PEAK 36(15Q14) WILD-TYPE    198    109     96
D66V4, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         95                          198
  CLUS_2                         15                          109
  CLUS_3                         33                           96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED      131     61     23
  DEL PEAK 36(15Q14) WILD-TYPE    398    409     68
D66V5, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                        131                          398
  CLUS_2                         61                          409
  CLUS_3                         23                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q14) MUTATED       37     23      4     28
  DEL PEAK 36(15Q14) WILD-TYPE    140    202     84    132
D66V6, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         37                          140
  CLUS_2                         23                          202
  CLUS_3                          4                           84
  CLUS_4                         28                          132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q14) MUTATED       39     18     34     15
  DEL PEAK 36(15Q14) WILD-TYPE    174    150    122     94
D66V7, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         39                          174
  CLUS_2                         18                          150
  CLUS_3                         34                          122
  CLUS_4                         15                           94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED       49     39     18
  DEL PEAK 36(15Q14) WILD-TYPE    185    215    140
D66V8, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         49                          185
  CLUS_2                         39                          215
  CLUS_3                         18                          140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED       62     18     25
  DEL PEAK 36(15Q14) WILD-TYPE    182    171    202
D66V9, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         62                          182
  CLUS_2                         18                          171
  CLUS_3                         25                          202
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED       50     21     34
  DEL PEAK 36(15Q14) WILD-TYPE    153    169    233
D66V10, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         50                          153
  CLUS_2                         21                          169
  CLUS_3                         34                          233
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q14) MUTATED       19     12     13     17
  DEL PEAK 36(15Q14) WILD-TYPE    121     95     69    163
D66V11, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         19                          121
  CLUS_2                         12                           95
  CLUS_3                         13                           69
  CLUS_4                         17                          163
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED       27     20     14
  DEL PEAK 36(15Q14) WILD-TYPE    195    164     89
D66V12, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         27                          195
  CLUS_2                         20                          164
  CLUS_3                         14                           89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q14) MUTATED       13     17     15     16
  DEL PEAK 36(15Q14) WILD-TYPE    114    102     90    138
D66V13, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         13                          114
  CLUS_2                         17                          102
  CLUS_3                         15                           90
  CLUS_4                         16                          138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(15Q14) MUTATED       10     12      9     14      6     10
  DEL PEAK 36(15Q14) WILD-TYPE     89     65    109     42     57     82
D66V14, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         10                           89
  CLUS_2                         12                           65
  CLUS_3                          9                          109
  CLUS_4                         14                           42
  CLUS_5                          6                           57
  CLUS_6                         10                           82
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 37(16P12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16P12.2) MUTATED       27     19     17     21
  DEL PEAK 37(16P12.2) WILD-TYPE    131     77    120     96
D67V1, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           27                            131
  CLUS_2                           19                             77
  CLUS_3                           17                            120
  CLUS_4                           21                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16P12.2) MUTATED       28     17     10     29
  DEL PEAK 37(16P12.2) WILD-TYPE    120     85     90    129
D67V2, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           28                            120
  CLUS_2                           17                             85
  CLUS_3                           10                             90
  CLUS_4                           29                            129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16P12.2) MUTATED       25     23     17     23
  DEL PEAK 37(16P12.2) WILD-TYPE    118    164     73    103
D67V3, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           25                            118
  CLUS_2                           23                            164
  CLUS_3                           17                             73
  CLUS_4                           23                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED       48     18     22
  DEL PEAK 37(16P12.2) WILD-TYPE    245    106    107
D67V4, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           48                            245
  CLUS_2                           18                            106
  CLUS_3                           22                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED       82     13     19
  DEL PEAK 37(16P12.2) WILD-TYPE    447    457     72
D67V5, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           82                            447
  CLUS_2                           13                            457
  CLUS_3                           19                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16P12.2) MUTATED       26     11      5      3
  DEL PEAK 37(16P12.2) WILD-TYPE    151    214     83    157
D67V6, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           26                            151
  CLUS_2                           11                            214
  CLUS_3                            5                             83
  CLUS_4                            3                            157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16P12.2) MUTATED       23     10     17      9
  DEL PEAK 37(16P12.2) WILD-TYPE    190    158    139    100
D67V7, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           23                            190
  CLUS_2                           10                            158
  CLUS_3                           17                            139
  CLUS_4                            9                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED       31     20      8
  DEL PEAK 37(16P12.2) WILD-TYPE    203    234    150
D67V8, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           31                            203
  CLUS_2                           20                            234
  CLUS_3                            8                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED       37      7      7
  DEL PEAK 37(16P12.2) WILD-TYPE    207    182    220
D67V9, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           37                            207
  CLUS_2                            7                            182
  CLUS_3                            7                            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED       32      8     11
  DEL PEAK 37(16P12.2) WILD-TYPE    171    182    256
D67V10, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           32                            171
  CLUS_2                            8                            182
  CLUS_3                           11                            256
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16P12.2) MUTATED        5      7      3      7
  DEL PEAK 37(16P12.2) WILD-TYPE    135    100     79    173
D67V11, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                            5                            135
  CLUS_2                            7                            100
  CLUS_3                            3                             79
  CLUS_4                            7                            173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED        7      5     10
  DEL PEAK 37(16P12.2) WILD-TYPE    215    179     93
D67V12, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                            7                            215
  CLUS_2                            5                            179
  CLUS_3                           10                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16P12.2) MUTATED        8      7      3      4
  DEL PEAK 37(16P12.2) WILD-TYPE    119    112    102    150
D67V13, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                            8                            119
  CLUS_2                            7                            112
  CLUS_3                            3                            102
  CLUS_4                            4                            150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(16P12.2) MUTATED        2      5      4      2      7      2
  DEL PEAK 37(16P12.2) WILD-TYPE     97     72    114     54     56     90
D67V14, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                            2                             97
  CLUS_2                            5                             72
  CLUS_3                            4                            114
  CLUS_4                            2                             54
  CLUS_5                            7                             56
  CLUS_6                            2                             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 38(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       32     24     13     21
  DEL PEAK 38(16Q23.1) WILD-TYPE    126     72    124     96
D68V1, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           32                            126
  CLUS_2                           24                             72
  CLUS_3                           13                            124
  CLUS_4                           21                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       28     17     13     32
  DEL PEAK 38(16Q23.1) WILD-TYPE    120     85     87    126
D68V2, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           28                            120
  CLUS_2                           17                             85
  CLUS_3                           13                             87
  CLUS_4                           32                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       28     31     17     21
  DEL PEAK 38(16Q23.1) WILD-TYPE    115    156     73    105
D68V3, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           28                            115
  CLUS_2                           31                            156
  CLUS_3                           17                             73
  CLUS_4                           21                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       50     20     27
  DEL PEAK 38(16Q23.1) WILD-TYPE    243    104    102
D68V4, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           50                            243
  CLUS_2                           20                            104
  CLUS_3                           27                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       89     23     17
  DEL PEAK 38(16Q23.1) WILD-TYPE    440    447     74
D68V5, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           89                            440
  CLUS_2                           23                            447
  CLUS_3                           17                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       32     15      4      4
  DEL PEAK 38(16Q23.1) WILD-TYPE    145    210     84    156
D68V6, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           32                            145
  CLUS_2                           15                            210
  CLUS_3                            4                             84
  CLUS_4                            4                            156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       23     11     24      8
  DEL PEAK 38(16Q23.1) WILD-TYPE    190    157    132    101
D68V7, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           23                            190
  CLUS_2                           11                            157
  CLUS_3                           24                            132
  CLUS_4                            8                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       37     22      7
  DEL PEAK 38(16Q23.1) WILD-TYPE    197    232    151
D68V8, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           37                            197
  CLUS_2                           22                            232
  CLUS_3                            7                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       42      9     11
  DEL PEAK 38(16Q23.1) WILD-TYPE    202    180    216
D68V9, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           42                            202
  CLUS_2                            9                            180
  CLUS_3                           11                            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       39      9     14
  DEL PEAK 38(16Q23.1) WILD-TYPE    164    181    253
D68V10, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           39                            164
  CLUS_2                            9                            181
  CLUS_3                           14                            253
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       12      3      4      9
  DEL PEAK 38(16Q23.1) WILD-TYPE    128    104     78    171
D68V11, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           12                            128
  CLUS_2                            3                            104
  CLUS_3                            4                             78
  CLUS_4                            9                            171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       10      6     12
  DEL PEAK 38(16Q23.1) WILD-TYPE    212    178     91
D68V12, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           10                            212
  CLUS_2                            6                            178
  CLUS_3                           12                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       12      6      4      5
  DEL PEAK 38(16Q23.1) WILD-TYPE    115    113    101    149
D68V13, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           12                            115
  CLUS_2                            6                            113
  CLUS_3                            4                            101
  CLUS_4                            5                            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(16Q23.1) MUTATED        3      4      5      2      8      5
  DEL PEAK 38(16Q23.1) WILD-TYPE     96     73    113     54     55     87
D68V14, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                            3                             96
  CLUS_2                            4                             73
  CLUS_3                            5                            113
  CLUS_4                            2                             54
  CLUS_5                            8                             55
  CLUS_6                            5                             87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 39(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.1) MUTATED       33     26     12     17
  DEL PEAK 39(17P13.1) WILD-TYPE    125     70    125    100
D69V1, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           33                            125
  CLUS_2                           26                             70
  CLUS_3                           12                            125
  CLUS_4                           17                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.1) MUTATED       32     27      9     20
  DEL PEAK 39(17P13.1) WILD-TYPE    116     75     91    138
D69V2, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           32                            116
  CLUS_2                           27                             75
  CLUS_3                            9                             91
  CLUS_4                           20                            138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.1) MUTATED       27     34     15     17
  DEL PEAK 39(17P13.1) WILD-TYPE    116    153     75    109
D69V3, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           27                            116
  CLUS_2                           34                            153
  CLUS_3                           15                             75
  CLUS_4                           17                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.1) MUTATED       51     22     20
  DEL PEAK 39(17P13.1) WILD-TYPE    242    102    109
D69V4, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           51                            242
  CLUS_2                           22                            102
  CLUS_3                           20                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.1) MUTATED       76     21     19
  DEL PEAK 39(17P13.1) WILD-TYPE    453    449     72
D69V5, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           76                            453
  CLUS_2                           21                            449
  CLUS_3                           19                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.1) MUTATED       21     10      3      2
  DEL PEAK 39(17P13.1) WILD-TYPE    156    215     85    158
D69V6, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           21                            156
  CLUS_2                           10                            215
  CLUS_3                            3                             85
  CLUS_4                            2                            158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.1) MUTATED       22     10     16      7
  DEL PEAK 39(17P13.1) WILD-TYPE    191    158    140    102
D69V7, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           22                            191
  CLUS_2                           10                            158
  CLUS_3                           16                            140
  CLUS_4                            7                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.1) MUTATED       28     18      9
  DEL PEAK 39(17P13.1) WILD-TYPE    206    236    149
D69V8, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           28                            206
  CLUS_2                           18                            236
  CLUS_3                            9                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.1) MUTATED       36      3      8
  DEL PEAK 39(17P13.1) WILD-TYPE    208    186    219
D69V9, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           36                            208
  CLUS_2                            3                            186
  CLUS_3                            8                            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.1) MUTATED       30     13      4
  DEL PEAK 39(17P13.1) WILD-TYPE    173    177    263
D69V10, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                           30                            173
  CLUS_2                           13                            177
  CLUS_3                            4                            263
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.1) MUTATED        7      6      2      3
  DEL PEAK 39(17P13.1) WILD-TYPE    133    101     80    177
D69V11, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                            7                            133
  CLUS_2                            6                            101
  CLUS_3                            2                             80
  CLUS_4                            3                            177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.1) MUTATED        7      2      9
  DEL PEAK 39(17P13.1) WILD-TYPE    215    182     94
D69V12, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                            7                            215
  CLUS_2                            2                            182
  CLUS_3                            9                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.1) MUTATED        7      5      1      4
  DEL PEAK 39(17P13.1) WILD-TYPE    120    114    104    150
D69V13, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                            7                            120
  CLUS_2                            5                            114
  CLUS_3                            1                            104
  CLUS_4                            4                            150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(17P13.1) MUTATED        4      3      0      1      4      5
  DEL PEAK 39(17P13.1) WILD-TYPE     95     74    118     55     59     87
D69V14, multiclass
        clus
vv       DEL PEAK 39(17P13.1) MUTATED DEL PEAK 39(17P13.1) WILD-TYPE
  CLUS_1                            4                             95
  CLUS_2                            3                             74
  CLUS_3                            0                            118
  CLUS_4                            1                             55
  CLUS_5                            4                             59
  CLUS_6                            5                             87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 40(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED       36      9     11      5
  DEL PEAK 40(17Q11.2) WILD-TYPE    122     87    126    112
D70V1, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           36                            122
  CLUS_2                            9                             87
  CLUS_3                           11                            126
  CLUS_4                            5                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED       35      7      9     10
  DEL PEAK 40(17Q11.2) WILD-TYPE    113     95     91    148
D70V2, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           35                            113
  CLUS_2                            7                             95
  CLUS_3                            9                             91
  CLUS_4                           10                            148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED       27     18      4     19
  DEL PEAK 40(17Q11.2) WILD-TYPE    116    169     86    107
D70V3, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           27                            116
  CLUS_2                           18                            169
  CLUS_3                            4                             86
  CLUS_4                           19                            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       26     24     18
  DEL PEAK 40(17Q11.2) WILD-TYPE    267    100    111
D70V4, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           26                            267
  CLUS_2                           24                            100
  CLUS_3                           18                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       60     14     19
  DEL PEAK 40(17Q11.2) WILD-TYPE    469    456     72
D70V5, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           60                            469
  CLUS_2                           14                            456
  CLUS_3                           19                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED       19      9      8      2
  DEL PEAK 40(17Q11.2) WILD-TYPE    158    216     80    158
D70V6, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           19                            158
  CLUS_2                            9                            216
  CLUS_3                            8                             80
  CLUS_4                            2                            158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED       21      7     10      9
  DEL PEAK 40(17Q11.2) WILD-TYPE    192    161    146    100
D70V7, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           21                            192
  CLUS_2                            7                            161
  CLUS_3                           10                            146
  CLUS_4                            9                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       29     11      7
  DEL PEAK 40(17Q11.2) WILD-TYPE    205    243    151
D70V8, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           29                            205
  CLUS_2                           11                            243
  CLUS_3                            7                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       29      4      7
  DEL PEAK 40(17Q11.2) WILD-TYPE    215    185    220
D70V9, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           29                            215
  CLUS_2                            4                            185
  CLUS_3                            7                            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       25     11      4
  DEL PEAK 40(17Q11.2) WILD-TYPE    178    179    263
D70V10, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           25                            178
  CLUS_2                           11                            179
  CLUS_3                            4                            263
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED       10      4      1      6
  DEL PEAK 40(17Q11.2) WILD-TYPE    130    103     81    174
D70V11, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           10                            130
  CLUS_2                            4                            103
  CLUS_3                            1                             81
  CLUS_4                            6                            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED        7      6      8
  DEL PEAK 40(17Q11.2) WILD-TYPE    215    178     95
D70V12, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            7                            215
  CLUS_2                            6                            178
  CLUS_3                            8                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED        5      7      1      7
  DEL PEAK 40(17Q11.2) WILD-TYPE    122    112    104    147
D70V13, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            5                            122
  CLUS_2                            7                            112
  CLUS_3                            1                            104
  CLUS_4                            7                            147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17Q11.2) MUTATED        4      4      2      0      6      4
  DEL PEAK 40(17Q11.2) WILD-TYPE     95     73    116     56     57     88
D70V14, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            4                             95
  CLUS_2                            4                             73
  CLUS_3                            2                            116
  CLUS_4                            0                             56
  CLUS_5                            6                             57
  CLUS_6                            4                             88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 41(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q23) MUTATED       21     17      8     18
  DEL PEAK 41(18Q23) WILD-TYPE    137     79    129     99
D71V1, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         21                          137
  CLUS_2                         17                           79
  CLUS_3                          8                          129
  CLUS_4                         18                           99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q23) MUTATED       22     15      4     23
  DEL PEAK 41(18Q23) WILD-TYPE    126     87     96    135
D71V2, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         22                          126
  CLUS_2                         15                           87
  CLUS_3                          4                           96
  CLUS_4                         23                          135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q23) MUTATED       25     25     10     12
  DEL PEAK 41(18Q23) WILD-TYPE    118    162     80    114
D71V3, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         25                          118
  CLUS_2                         25                          162
  CLUS_3                         10                           80
  CLUS_4                         12                          114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q23) MUTATED       38     14     20
  DEL PEAK 41(18Q23) WILD-TYPE    255    110    109
D71V4, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         38                          255
  CLUS_2                         14                          110
  CLUS_3                         20                          109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q23) MUTATED       75     72      8
  DEL PEAK 41(18Q23) WILD-TYPE    454    398     83
D71V5, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         75                          454
  CLUS_2                         72                          398
  CLUS_3                          8                           83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q23) MUTATED       28     28      8     35
  DEL PEAK 41(18Q23) WILD-TYPE    149    197     80    125
D71V6, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         28                          149
  CLUS_2                         28                          197
  CLUS_3                          8                           80
  CLUS_4                         35                          125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q23) MUTATED       30     20     25     19
  DEL PEAK 41(18Q23) WILD-TYPE    183    148    131     90
D71V7, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         30                          183
  CLUS_2                         20                          148
  CLUS_3                         25                          131
  CLUS_4                         19                           90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q23) MUTATED       40     32     22
  DEL PEAK 41(18Q23) WILD-TYPE    194    222    136
D71V8, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         40                          194
  CLUS_2                         32                          222
  CLUS_3                         22                          136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q23) MUTATED       36     25     37
  DEL PEAK 41(18Q23) WILD-TYPE    208    164    190
D71V9, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         36                          208
  CLUS_2                         25                          164
  CLUS_3                         37                          190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q23) MUTATED       26     30     42
  DEL PEAK 41(18Q23) WILD-TYPE    177    160    225
D71V10, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         26                          177
  CLUS_2                         30                          160
  CLUS_3                         42                          225
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q23) MUTATED       23     14     19     22
  DEL PEAK 41(18Q23) WILD-TYPE    117     93     63    158
D71V11, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         23                          117
  CLUS_2                         14                           93
  CLUS_3                         19                           63
  CLUS_4                         22                          158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q23) MUTATED       38     25     15
  DEL PEAK 41(18Q23) WILD-TYPE    184    159     88
D71V12, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         38                          184
  CLUS_2                         25                          159
  CLUS_3                         15                           88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q23) MUTATED       21     14     20     22
  DEL PEAK 41(18Q23) WILD-TYPE    106    105     85    132
D71V13, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         21                          106
  CLUS_2                         14                          105
  CLUS_3                         20                           85
  CLUS_4                         22                          132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(18Q23) MUTATED       15     11     15     12      9     15
  DEL PEAK 41(18Q23) WILD-TYPE     84     66    103     44     54     77
D71V14, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         15                           84
  CLUS_2                         11                           66
  CLUS_3                         15                          103
  CLUS_4                         12                           44
  CLUS_5                          9                           54
  CLUS_6                         15                           77
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 42(19Q13.41) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19Q13.41) MUTATED       23     23     13     29
  DEL PEAK 42(19Q13.41) WILD-TYPE    135     73    124     88
D72V1, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            23                             135
  CLUS_2                            23                              73
  CLUS_3                            13                             124
  CLUS_4                            29                              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19Q13.41) MUTATED       24     33      6     25
  DEL PEAK 42(19Q13.41) WILD-TYPE    124     69     94    133
D72V2, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            24                             124
  CLUS_2                            33                              69
  CLUS_3                             6                              94
  CLUS_4                            25                             133
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19Q13.41) MUTATED       18     43     12     21
  DEL PEAK 42(19Q13.41) WILD-TYPE    125    144     78    105
D72V3, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            18                             125
  CLUS_2                            43                             144
  CLUS_3                            12                              78
  CLUS_4                            21                             105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.41) MUTATED       61     19     14
  DEL PEAK 42(19Q13.41) WILD-TYPE    232    105    115
D72V4, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            61                             232
  CLUS_2                            19                             105
  CLUS_3                            14                             115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.41) MUTATED       73    283      8
  DEL PEAK 42(19Q13.41) WILD-TYPE    456    187     83
D72V5, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            73                             456
  CLUS_2                           283                             187
  CLUS_3                             8                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19Q13.41) MUTATED       24     80     24    159
  DEL PEAK 42(19Q13.41) WILD-TYPE    153    145     64      1
D72V6, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            24                             153
  CLUS_2                            80                             145
  CLUS_3                            24                              64
  CLUS_4                           159                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19Q13.41) MUTATED       78     84     70     32
  DEL PEAK 42(19Q13.41) WILD-TYPE    135     84     86     77
D72V7, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            78                             135
  CLUS_2                            84                              84
  CLUS_3                            70                              86
  CLUS_4                            32                              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.41) MUTATED       86     93     85
  DEL PEAK 42(19Q13.41) WILD-TYPE    148    161     73
D72V8, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            86                             148
  CLUS_2                            93                             161
  CLUS_3                            85                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.41) MUTATED       46    119    126
  DEL PEAK 42(19Q13.41) WILD-TYPE    198     70    101
D72V9, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            46                             198
  CLUS_2                           119                              70
  CLUS_3                           126                             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.41) MUTATED       23     70    198
  DEL PEAK 42(19Q13.41) WILD-TYPE    180    120     69
D72V10, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            23                             180
  CLUS_2                            70                             120
  CLUS_3                           198                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19Q13.41) MUTATED       52     35     76    104
  DEL PEAK 42(19Q13.41) WILD-TYPE     88     72      6     76
D72V11, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            52                              88
  CLUS_2                            35                              72
  CLUS_3                            76                               6
  CLUS_4                           104                              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19Q13.41) MUTATED      130    117     20
  DEL PEAK 42(19Q13.41) WILD-TYPE     92     67     83
D72V12, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                           130                              92
  CLUS_2                           117                              67
  CLUS_3                            20                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19Q13.41) MUTATED       41     43     95     87
  DEL PEAK 42(19Q13.41) WILD-TYPE     86     76     10     67
D72V13, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            41                              86
  CLUS_2                            43                              76
  CLUS_3                            95                              10
  CLUS_4                            87                              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(19Q13.41) MUTATED       34     51     74     56      2     49
  DEL PEAK 42(19Q13.41) WILD-TYPE     65     26     44      0     61     43
D72V14, multiclass
        clus
vv       DEL PEAK 42(19Q13.41) MUTATED DEL PEAK 42(19Q13.41) WILD-TYPE
  CLUS_1                            34                              65
  CLUS_2                            51                              26
  CLUS_3                            74                              44
  CLUS_4                            56                               0
  CLUS_5                             2                              61
  CLUS_6                            49                              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 43(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19Q13.43) MUTATED       17     23      7     29
  DEL PEAK 43(19Q13.43) WILD-TYPE    141     73    130     88
D73V1, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            17                             141
  CLUS_2                            23                              73
  CLUS_3                             7                             130
  CLUS_4                            29                              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19Q13.43) MUTATED       18     32      3     23
  DEL PEAK 43(19Q13.43) WILD-TYPE    130     70     97    135
D73V2, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            18                             130
  CLUS_2                            32                              70
  CLUS_3                             3                              97
  CLUS_4                            23                             135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19Q13.43) MUTATED       13     42     10     16
  DEL PEAK 43(19Q13.43) WILD-TYPE    130    145     80    110
D73V3, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            13                             130
  CLUS_2                            42                             145
  CLUS_3                            10                              80
  CLUS_4                            16                             110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19Q13.43) MUTATED       54     13     14
  DEL PEAK 43(19Q13.43) WILD-TYPE    239    111    115
D73V4, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            54                             239
  CLUS_2                            13                             111
  CLUS_3                            14                             115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19Q13.43) MUTATED       57    290      8
  DEL PEAK 43(19Q13.43) WILD-TYPE    472    180     83
D73V5, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            57                             472
  CLUS_2                           290                             180
  CLUS_3                             8                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19Q13.43) MUTATED       20     87     23    158
  DEL PEAK 43(19Q13.43) WILD-TYPE    157    138     65      2
D73V6, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            20                             157
  CLUS_2                            87                             138
  CLUS_3                            23                              65
  CLUS_4                           158                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19Q13.43) MUTATED       78     80     71     34
  DEL PEAK 43(19Q13.43) WILD-TYPE    135     88     85     75
D73V7, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            78                             135
  CLUS_2                            80                              88
  CLUS_3                            71                              85
  CLUS_4                            34                              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19Q13.43) MUTATED       90     92     81
  DEL PEAK 43(19Q13.43) WILD-TYPE    144    162     77
D73V8, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            90                             144
  CLUS_2                            92                             162
  CLUS_3                            81                              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19Q13.43) MUTATED       43    118    132
  DEL PEAK 43(19Q13.43) WILD-TYPE    201     71     95
D73V9, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            43                             201
  CLUS_2                           118                              71
  CLUS_3                           132                              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19Q13.43) MUTATED       19     76    198
  DEL PEAK 43(19Q13.43) WILD-TYPE    184    114     69
D73V10, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            19                             184
  CLUS_2                            76                             114
  CLUS_3                           198                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19Q13.43) MUTATED       58     35     77    100
  DEL PEAK 43(19Q13.43) WILD-TYPE     82     72      5     80
D73V11, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            58                              82
  CLUS_2                            35                              72
  CLUS_3                            77                               5
  CLUS_4                           100                              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19Q13.43) MUTATED      136    115     19
  DEL PEAK 43(19Q13.43) WILD-TYPE     86     69     84
D73V12, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                           136                              86
  CLUS_2                           115                              69
  CLUS_3                            19                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19Q13.43) MUTATED       47     42     95     85
  DEL PEAK 43(19Q13.43) WILD-TYPE     80     77     10     69
D73V13, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            47                              80
  CLUS_2                            42                              77
  CLUS_3                            95                              10
  CLUS_4                            85                              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(19Q13.43) MUTATED       39     50     70     56      2     52
  DEL PEAK 43(19Q13.43) WILD-TYPE     60     27     48      0     61     40
D73V14, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            39                              60
  CLUS_2                            50                              27
  CLUS_3                            70                              48
  CLUS_4                            56                               0
  CLUS_5                             2                              61
  CLUS_6                            52                              40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 44(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED       62     38     52     40
  DEL PEAK 44(22Q13.32) WILD-TYPE     96     58     85     77
D74V1, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            62                              96
  CLUS_2                            38                              58
  CLUS_3                            52                              85
  CLUS_4                            40                              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED       55     37     39     61
  DEL PEAK 44(22Q13.32) WILD-TYPE     93     65     61     97
D74V2, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            55                              93
  CLUS_2                            37                              65
  CLUS_3                            39                              61
  CLUS_4                            61                              97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED       55     82     26     43
  DEL PEAK 44(22Q13.32) WILD-TYPE     88    105     64     83
D74V3, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            55                              88
  CLUS_2                            82                             105
  CLUS_3                            26                              64
  CLUS_4                            43                              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED      107     44     55
  DEL PEAK 44(22Q13.32) WILD-TYPE    186     80     74
D74V4, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                           107                             186
  CLUS_2                            44                              80
  CLUS_3                            55                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED      194     57     38
  DEL PEAK 44(22Q13.32) WILD-TYPE    335    413     53
D74V5, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                           194                             335
  CLUS_2                            57                             413
  CLUS_3                            38                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED       60     45     20      5
  DEL PEAK 44(22Q13.32) WILD-TYPE    117    180     68    155
D74V6, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            60                             117
  CLUS_2                            45                             180
  CLUS_3                            20                              68
  CLUS_4                             5                             155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED       41     26     53     24
  DEL PEAK 44(22Q13.32) WILD-TYPE    172    142    103     85
D74V7, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            41                             172
  CLUS_2                            26                             142
  CLUS_3                            53                             103
  CLUS_4                            24                              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       60     64     20
  DEL PEAK 44(22Q13.32) WILD-TYPE    174    190    138
D74V8, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            60                             174
  CLUS_2                            64                             190
  CLUS_3                            20                             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       95     23     23
  DEL PEAK 44(22Q13.32) WILD-TYPE    149    166    204
D74V9, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            95                             149
  CLUS_2                            23                             166
  CLUS_3                            23                             204
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       80     36     25
  DEL PEAK 44(22Q13.32) WILD-TYPE    123    154    242
D74V10, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            80                             123
  CLUS_2                            36                             154
  CLUS_3                            25                             242
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED       27     22      7     21
  DEL PEAK 44(22Q13.32) WILD-TYPE    113     85     75    159
D74V11, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            27                             113
  CLUS_2                            22                              85
  CLUS_3                             7                              75
  CLUS_4                            21                             159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       27     18     32
  DEL PEAK 44(22Q13.32) WILD-TYPE    195    166     71
D74V12, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            27                             195
  CLUS_2                            18                             166
  CLUS_3                            32                              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED       24     32      6     14
  DEL PEAK 44(22Q13.32) WILD-TYPE    103     87     99    140
D74V13, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            24                             103
  CLUS_2                            32                              87
  CLUS_3                             6                              99
  CLUS_4                            14                             140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(22Q13.32) MUTATED       11     20     13      3     20      9
  DEL PEAK 44(22Q13.32) WILD-TYPE     88     57    105     53     43     83
D74V14, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            11                              88
  CLUS_2                            20                              57
  CLUS_3                            13                             105
  CLUS_4                             3                              53
  CLUS_5                            20                              43
  CLUS_6                             9                              83
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = DEL PEAK 45(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(XQ21.1) MUTATED       22     25     21     24
  DEL PEAK 45(XQ21.1) WILD-TYPE    136     71    116     93
D75V1, multiclass
        clus
vv       DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE
  CLUS_1                          22                           136
  CLUS_2                          25                            71
  CLUS_3                          21                           116
  CLUS_4                          24                            93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(XQ21.1) MUTATED       16     32     16     28
  DEL PEAK 45(XQ21.1) WILD-TYPE    132     70     84    130
D75V2, multiclass
        clus
vv       DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE
  CLUS_1                          16                           132
  CLUS_2                          32                            70
  CLUS_3                          16                            84
  CLUS_4                          28                           130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(XQ21.1) MUTATED       22     46     14     17
  DEL PEAK 45(XQ21.1) WILD-TYPE    121    141     76    109
D75V3, multiclass
        clus
vv       DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE
  CLUS_1                          22                           121
  CLUS_2                          46                           141
  CLUS_3                          14                            76
  CLUS_4                          17                           109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(XQ21.1) MUTATED       56     15     28
  DEL PEAK 45(XQ21.1) WILD-TYPE    237    109    101
D75V4, multiclass
        clus
vv       DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE
  CLUS_1                          56                           237
  CLUS_2                          15                           109
  CLUS_3                          28                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(XQ21.1) MUTATED       86     81     16
  DEL PEAK 45(XQ21.1) WILD-TYPE    443    389     75
D75V5, multiclass
        clus
vv       DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE
  CLUS_1                          86                           443
  CLUS_2                          81                           389
  CLUS_3                          16                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(XQ21.1) MUTATED       39     39      4     30
  DEL PEAK 45(XQ21.1) WILD-TYPE    138    186     84    130
D75V6, multiclass
        clus
vv       DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE
  CLUS_1                          39                           138
  CLUS_2                          39                           186
  CLUS_3                           4                            84
  CLUS_4                          30                           130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(XQ21.1) MUTATED       40     19     42     13
  DEL PEAK 45(XQ21.1) WILD-TYPE    173    149    114     96
D75V7, multiclass
        clus
vv       DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE
  CLUS_1                          40                           173
  CLUS_2                          19                           149
  CLUS_3                          42                           114
  CLUS_4                          13                            96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(XQ21.1) MUTATED       52     43     19
  DEL PEAK 45(XQ21.1) WILD-TYPE    182    211    139
D75V8, multiclass
        clus
vv       DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE
  CLUS_1                          52                           182
  CLUS_2                          43                           211
  CLUS_3                          19                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(XQ21.1) MUTATED       60     21     34
  DEL PEAK 45(XQ21.1) WILD-TYPE    184    168    193
D75V9, multiclass
        clus
vv       DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE
  CLUS_1                          60                           184
  CLUS_2                          21                           168
  CLUS_3                          34                           193
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(XQ21.1) MUTATED       42     32     41
  DEL PEAK 45(XQ21.1) WILD-TYPE    161    158    226
D75V10, multiclass
        clus
vv       DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE
  CLUS_1                          42                           161
  CLUS_2                          32                           158
  CLUS_3                          41                           226
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(XQ21.1) MUTATED       14     18     25     21
  DEL PEAK 45(XQ21.1) WILD-TYPE    126     89     57    159
D75V11, multiclass
        clus
vv       DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE
  CLUS_1                          14                           126
  CLUS_2                          18                            89
  CLUS_3                          25                            57
  CLUS_4                          21                           159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(XQ21.1) MUTATED       36     23     19
  DEL PEAK 45(XQ21.1) WILD-TYPE    186    161     84
D75V12, multiclass
        clus
vv       DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE
  CLUS_1                          36                           186
  CLUS_2                          23                           161
  CLUS_3                          19                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(XQ21.1) MUTATED       20     15     30     12
  DEL PEAK 45(XQ21.1) WILD-TYPE    107    104     75    142
D75V13, multiclass
        clus
vv       DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE
  CLUS_1                          20                           107
  CLUS_2                          15                           104
  CLUS_3                          30                            75
  CLUS_4                          12                           142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(XQ21.1) MUTATED       12     18      6     13      6     22
  DEL PEAK 45(XQ21.1) WILD-TYPE     87     59    112     43     57     70
D75V14, multiclass
        clus
vv       DEL PEAK 45(XQ21.1) MUTATED DEL PEAK 45(XQ21.1) WILD-TYPE
  CLUS_1                          12                            87
  CLUS_2                          18                            59
  CLUS_3                           6                           112
  CLUS_4                          13                            43
  CLUS_5                           6                            57
  CLUS_6                          22                            70
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
