[1] "ofn"        "-oTHNSC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/HNSC-TP/22541004/HNSC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/HNSC-TP/22508724/transformed.cor.cli.txt"

nPatients in clinical file=528, in cluster file=522, common to both=522
[1]  76 522
[1] "AMP PEAK  1(2Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE 
                          107                           415 
  AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE 
                          107                           415 
[1] "AMP PEAK  2(2Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE 
                          112                           410 
  AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE 
                          112                           410 
[1] "AMP PEAK  3(3Q26.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE 
                           380                            142 
  AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE 
                           380                            142 
[1] "AMP PEAK  4(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                           240                            282 
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                           240                            282 
[1] "AMP PEAK  5(5P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(5P12) MUTATED AMP PEAK  5(5P12) WILD-TYPE 
                        205                         317 
  AMP PEAK  5(5P12) MUTATED AMP PEAK  5(5P12) WILD-TYPE 
                        205                         317 
[1] "AMP PEAK  6(6P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(6P12.1) MUTATED AMP PEAK  6(6P12.1) WILD-TYPE 
                          110                           412 
  AMP PEAK  6(6P12.1) MUTATED AMP PEAK  6(6P12.1) WILD-TYPE 
                          110                           412 
[1] "AMP PEAK  7(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                         96                         426 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                         96                         426 
[1] "AMP PEAK  8(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                          222                           300 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                          222                           300 
[1] "AMP PEAK  9(7Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(7Q21.3) MUTATED AMP PEAK  9(7Q21.3) WILD-TYPE 
                          169                           353 
  AMP PEAK  9(7Q21.3) MUTATED AMP PEAK  9(7Q21.3) WILD-TYPE 
                          169                           353 
[1] "AMP PEAK 10(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                           161                            361 
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                           161                            361 
[1] "AMP PEAK 11(8Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8Q11.21) MUTATED AMP PEAK 11(8Q11.21) WILD-TYPE 
                           310                            212 
  AMP PEAK 11(8Q11.21) MUTATED AMP PEAK 11(8Q11.21) WILD-TYPE 
                           310                            212 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           386                            136 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           386                            136 
[1] "AMP PEAK 13(9P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE 
                          126                           396 
  AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE 
                          126                           396 
[1] "AMP PEAK 14(9P23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE 
                        124                         398 
  AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE 
                        124                         398 
[1] "AMP PEAK 15(9P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE 
                          139                           383 
  AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE 
                          139                           383 
[1] "AMP PEAK 16(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                          177                           345 
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                          177                           345 
[1] "AMP PEAK 17(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(11P13) MUTATED AMP PEAK 17(11P13) WILD-TYPE 
                         102                          420 
  AMP PEAK 17(11P13) MUTATED AMP PEAK 17(11P13) WILD-TYPE 
                         102                          420 
[1] "AMP PEAK 18(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE 
                           229                            293 
  AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE 
                           229                            293 
[1] "AMP PEAK 19(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(12P13.33) MUTATED AMP PEAK 19(12P13.33) WILD-TYPE 
                            167                             355 
  AMP PEAK 19(12P13.33) MUTATED AMP PEAK 19(12P13.33) WILD-TYPE 
                            167                             355 
[1] "AMP PEAK 20(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(12Q15) MUTATED AMP PEAK 20(12Q15) WILD-TYPE 
                         103                          419 
  AMP PEAK 20(12Q15) MUTATED AMP PEAK 20(12Q15) WILD-TYPE 
                         103                          419 
[1] "AMP PEAK 21(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(13Q22.1) MUTATED AMP PEAK 21(13Q22.1) WILD-TYPE 
                           105                            417 
  AMP PEAK 21(13Q22.1) MUTATED AMP PEAK 21(13Q22.1) WILD-TYPE 
                           105                            417 
[1] "AMP PEAK 22(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(13Q34) MUTATED AMP PEAK 22(13Q34) WILD-TYPE 
                         106                          416 
  AMP PEAK 22(13Q34) MUTATED AMP PEAK 22(13Q34) WILD-TYPE 
                         106                          416 
[1] "AMP PEAK 23(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(15Q26.3) MUTATED AMP PEAK 23(15Q26.3) WILD-TYPE 
                           105                            417 
  AMP PEAK 23(15Q26.3) MUTATED AMP PEAK 23(15Q26.3) WILD-TYPE 
                           105                            417 
[1] "AMP PEAK 24(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                          91                          431 
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                          91                          431 
[1] "AMP PEAK 25(18P11.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(18P11.31) MUTATED AMP PEAK 25(18P11.31) WILD-TYPE 
                            156                             366 
  AMP PEAK 25(18P11.31) MUTATED AMP PEAK 25(18P11.31) WILD-TYPE 
                            156                             366 
[1] "AMP PEAK 26(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE 
                           106                            416 
  AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE 
                           106                            416 
[1] "AMP PEAK 27(20Q11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(20Q11.22) MUTATED AMP PEAK 27(20Q11.22) WILD-TYPE 
                            227                             295 
  AMP PEAK 27(20Q11.22) MUTATED AMP PEAK 27(20Q11.22) WILD-TYPE 
                            227                             295 
[1] "AMP PEAK 28(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE 
                        150                         372 
  AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE 
                        150                         372 
[1] "DEL PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            95                            427 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            95                            427 
[1] "DEL PEAK  2(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                          133                           389 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                          133                           389 
[1] "DEL PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         48                         474 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         48                         474 
[1] "DEL PEAK  4(2Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE 
                           78                           444 
  DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE 
                           78                           444 
[1] "DEL PEAK  5(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                          121                           401 
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                          121                           401 
[1] "DEL PEAK  6(2Q36.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE 
                          157                           365 
  DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE 
                          157                           365 
[1] "DEL PEAK  7(3P26.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE 
                          348                           174 
  DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE 
                          348                           174 
[1] "DEL PEAK  8(3P24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE 
                          368                           154 
  DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE 
                          368                           154 
[1] "DEL PEAK  9(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE 
                          372                           150 
  DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE 
                          372                           150 
[1] "DEL PEAK 10(3P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE 
                          343                           179 
  DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE 
                          343                           179 
[1] "DEL PEAK 11(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE 
                          205                           317 
  DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE 
                          205                           317 
[1] "DEL PEAK 12(4P15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(4P15.2) MUTATED DEL PEAK 12(4P15.2) WILD-TYPE 
                          208                           314 
  DEL PEAK 12(4P15.2) MUTATED DEL PEAK 12(4P15.2) WILD-TYPE 
                          208                           314 
[1] "DEL PEAK 13(4Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(4Q21.3) MUTATED DEL PEAK 13(4Q21.3) WILD-TYPE 
                          156                           366 
  DEL PEAK 13(4Q21.3) MUTATED DEL PEAK 13(4Q21.3) WILD-TYPE 
                          156                           366 
[1] "DEL PEAK 14(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(4Q22.1) MUTATED DEL PEAK 14(4Q22.1) WILD-TYPE 
                          169                           353 
  DEL PEAK 14(4Q22.1) MUTATED DEL PEAK 14(4Q22.1) WILD-TYPE 
                          169                           353 
[1] "DEL PEAK 15(4Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(4Q35.2) MUTATED DEL PEAK 15(4Q35.2) WILD-TYPE 
                          213                           309 
  DEL PEAK 15(4Q35.2) MUTATED DEL PEAK 15(4Q35.2) WILD-TYPE 
                          213                           309 
[1] "DEL PEAK 16(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(5Q12.1) MUTATED DEL PEAK 16(5Q12.1) WILD-TYPE 
                          215                           307 
  DEL PEAK 16(5Q12.1) MUTATED DEL PEAK 16(5Q12.1) WILD-TYPE 
                          215                           307 
[1] "DEL PEAK 17(5Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(5Q15) MUTATED DEL PEAK 17(5Q15) WILD-TYPE 
                        226                         296 
  DEL PEAK 17(5Q15) MUTATED DEL PEAK 17(5Q15) WILD-TYPE 
                        226                         296 
[1] "DEL PEAK 18(5Q35.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(5Q35.3) MUTATED DEL PEAK 18(5Q35.3) WILD-TYPE 
                          199                           323 
  DEL PEAK 18(5Q35.3) MUTATED DEL PEAK 18(5Q35.3) WILD-TYPE 
                          199                           323 
[1] "DEL PEAK 19(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(6P25.3) MUTATED DEL PEAK 19(6P25.3) WILD-TYPE 
                           96                           426 
  DEL PEAK 19(6P25.3) MUTATED DEL PEAK 19(6P25.3) WILD-TYPE 
                           96                           426 
[1] "DEL PEAK 20(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE 
                           77                           445 
  DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE 
                           77                           445 
[1] "DEL PEAK 21(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(7Q36.1) MUTATED DEL PEAK 21(7Q36.1) WILD-TYPE 
                          132                           390 
  DEL PEAK 21(7Q36.1) MUTATED DEL PEAK 21(7Q36.1) WILD-TYPE 
                          132                           390 
[1] "DEL PEAK 22(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE 
                          305                           217 
  DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE 
                          305                           217 
[1] "DEL PEAK 23(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE 
                        239                         283 
  DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE 
                        239                         283 
[1] "DEL PEAK 24(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE 
                          302                           220 
  DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE 
                          302                           220 
[1] "DEL PEAK 25(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE 
                           108                            414 
  DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE 
                           108                            414 
[1] "DEL PEAK 26(9Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(9Q34.3) MUTATED DEL PEAK 26(9Q34.3) WILD-TYPE 
                           79                           443 
  DEL PEAK 26(9Q34.3) MUTATED DEL PEAK 26(9Q34.3) WILD-TYPE 
                           79                           443 
[1] "DEL PEAK 27(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE 
                           170                            352 
  DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE 
                           170                            352 
[1] "DEL PEAK 28(10P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE 
                            163                             359 
  DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE 
                            163                             359 
[1] "DEL PEAK 29(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(10Q23.31) MUTATED DEL PEAK 29(10Q23.31) WILD-TYPE 
                            138                             384 
  DEL PEAK 29(10Q23.31) MUTATED DEL PEAK 29(10Q23.31) WILD-TYPE 
                            138                             384 
[1] "DEL PEAK 30(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(11P15.5) MUTATED DEL PEAK 30(11P15.5) WILD-TYPE 
                           163                            359 
  DEL PEAK 30(11P15.5) MUTATED DEL PEAK 30(11P15.5) WILD-TYPE 
                           163                            359 
[1] "DEL PEAK 31(11Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(11Q23.1) MUTATED DEL PEAK 31(11Q23.1) WILD-TYPE 
                           246                            276 
  DEL PEAK 31(11Q23.1) MUTATED DEL PEAK 31(11Q23.1) WILD-TYPE 
                           246                            276 
[1] "DEL PEAK 32(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(12Q24.33) MUTATED DEL PEAK 32(12Q24.33) WILD-TYPE 
                             63                             459 
  DEL PEAK 32(12Q24.33) MUTATED DEL PEAK 32(12Q24.33) WILD-TYPE 
                             63                             459 
[1] "DEL PEAK 33(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE 
                            233                             289 
  DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE 
                            233                             289 
[1] "DEL PEAK 34(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE 
                           217                            305 
  DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE 
                           217                            305 
[1] "DEL PEAK 35(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE 
                            75                            447 
  DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE 
                            75                            447 
[1] "DEL PEAK 36(14Q32.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(14Q32.32) MUTATED DEL PEAK 36(14Q32.32) WILD-TYPE 
                             75                             447 
  DEL PEAK 36(14Q32.32) MUTATED DEL PEAK 36(14Q32.32) WILD-TYPE 
                             75                             447 
[1] "DEL PEAK 37(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE 
                           124                            398 
  DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE 
                           124                            398 
[1] "DEL PEAK 38(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                            98                            424 
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                            98                            424 
[1] "DEL PEAK 39(16Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(16Q23.3) MUTATED DEL PEAK 39(16Q23.3) WILD-TYPE 
                           105                            417 
  DEL PEAK 39(16Q23.3) MUTATED DEL PEAK 39(16Q23.3) WILD-TYPE 
                           105                            417 
[1] "DEL PEAK 40(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE 
                            99                            423 
  DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE 
                            99                            423 
[1] "DEL PEAK 41(17Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(17Q25.3) MUTATED DEL PEAK 41(17Q25.3) WILD-TYPE 
                            71                            451 
  DEL PEAK 41(17Q25.3) MUTATED DEL PEAK 41(17Q25.3) WILD-TYPE 
                            71                            451 
[1] "DEL PEAK 42(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE 
                         288                          234 
  DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE 
                         288                          234 
[1] "DEL PEAK 43(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE 
                           175                            347 
  DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE 
                           175                            347 
[1] "DEL PEAK 44(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE 
                             97                             425 
  DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE 
                             97                             425 
[1] "DEL PEAK 45(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE 
                           208                            314 
  DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE 
                           208                            314 
[1] "DEL PEAK 46(XP22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                          157                           365 
  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                          157                           365 
[1] "DEL PEAK 47(XP21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE 
                          159                           363 
  DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE 
                          159                           363 
[1] "DEL PEAK 48(XQ21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE 
                            80                            442 
  DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE 
                            80                            442 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 522 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 522 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=7, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(2Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(2Q11.2) MUTATED       55     42      4      6
  AMP PEAK  1(2Q11.2) WILD-TYPE    148     86    141     40
D1V1, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          55                           148
  CLUS_2                          42                            86
  CLUS_3                           4                           141
  CLUS_4                           6                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(2Q11.2) MUTATED        7     34      7     38      2     17
  AMP PEAK  1(2Q11.2) WILD-TYPE     77     53     96     51     76     58
                               vv
clus                            CLUS_7
  AMP PEAK  1(2Q11.2) MUTATED        2
  AMP PEAK  1(2Q11.2) WILD-TYPE      4
D1V2, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                           7                            77
  CLUS_2                          34                            53
  CLUS_3                           7                            96
  CLUS_4                          38                            51
  CLUS_5                           2                            76
  CLUS_6                          17                            58
  CLUS_7                           2                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(2Q11.2) MUTATED       13      3     14      7     15
  AMP PEAK  1(2Q11.2) WILD-TYPE     37     26     17     22     52
D1V3, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          13                            37
  CLUS_2                           3                            26
  CLUS_3                          14                            17
  CLUS_4                           7                            22
  CLUS_5                          15                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q11.2) MUTATED       16     22     14
  AMP PEAK  1(2Q11.2) WILD-TYPE     60     60     34
D1V4, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          16                            60
  CLUS_2                          22                            60
  CLUS_3                          14                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(2Q11.2) MUTATED       27     15     44     20
  AMP PEAK  1(2Q11.2) WILD-TYPE    108     98    127     75
D1V5, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          27                           108
  CLUS_2                          15                            98
  CLUS_3                          44                           127
  CLUS_4                          20                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(2Q11.2) MUTATED       32     44     28      2
  AMP PEAK  1(2Q11.2) WILD-TYPE    144     59    142     63
D1V6, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          32                           144
  CLUS_2                          44                            59
  CLUS_3                          28                           142
  CLUS_4                           2                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(2Q11.2) MUTATED       32     22     21     17     13
  AMP PEAK  1(2Q11.2) WILD-TYPE     49    117    110     74     63
D1V7, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          32                            49
  CLUS_2                          22                           117
  CLUS_3                          21                           110
  CLUS_4                          17                            74
  CLUS_5                          13                            63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q11.2) MUTATED       35     44     26
  AMP PEAK  1(2Q11.2) WILD-TYPE    155     98    160
D1V8, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          35                           155
  CLUS_2                          44                            98
  CLUS_3                          26                           160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q11.2) MUTATED       32     36     28
  AMP PEAK  1(2Q11.2) WILD-TYPE    109    153    115
D1V9, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          32                           109
  CLUS_2                          36                           153
  CLUS_3                          28                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q11.2) MUTATED       38     19     39
  AMP PEAK  1(2Q11.2) WILD-TYPE    133     85    159
D1V10, multiclass
        clus
vv       AMP PEAK  1(2Q11.2) MUTATED AMP PEAK  1(2Q11.2) WILD-TYPE
  CLUS_1                          38                           133
  CLUS_2                          19                            85
  CLUS_3                          39                           159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(2Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q31.2) MUTATED       56     46      6      4
  AMP PEAK  2(2Q31.2) WILD-TYPE    147     82    139     42
D2V1, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          56                           147
  CLUS_2                          46                            82
  CLUS_3                           6                           139
  CLUS_4                           4                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2Q31.2) MUTATED        8     27      8     47      5     15
  AMP PEAK  2(2Q31.2) WILD-TYPE     76     60     95     42     73     60
                               vv
clus                            CLUS_7
  AMP PEAK  2(2Q31.2) MUTATED        2
  AMP PEAK  2(2Q31.2) WILD-TYPE      4
D2V2, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                           8                            76
  CLUS_2                          27                            60
  CLUS_3                           8                            95
  CLUS_4                          47                            42
  CLUS_5                           5                            73
  CLUS_6                          15                            60
  CLUS_7                           2                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(2Q31.2) MUTATED       11      6     14      6     17
  AMP PEAK  2(2Q31.2) WILD-TYPE     39     23     17     23     50
D2V3, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          11                            39
  CLUS_2                           6                            23
  CLUS_3                          14                            17
  CLUS_4                           6                            23
  CLUS_5                          17                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q31.2) MUTATED       16     26     12
  AMP PEAK  2(2Q31.2) WILD-TYPE     60     56     36
D2V4, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          16                            60
  CLUS_2                          26                            56
  CLUS_3                          12                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q31.2) MUTATED       33     14     43     22
  AMP PEAK  2(2Q31.2) WILD-TYPE    102     99    128     73
D2V5, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          33                           102
  CLUS_2                          14                            99
  CLUS_3                          43                           128
  CLUS_4                          22                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q31.2) MUTATED       35     41     32      4
  AMP PEAK  2(2Q31.2) WILD-TYPE    141     62    138     61
D2V6, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          35                           141
  CLUS_2                          41                            62
  CLUS_3                          32                           138
  CLUS_4                           4                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(2Q31.2) MUTATED       30     21     23     19     17
  AMP PEAK  2(2Q31.2) WILD-TYPE     51    118    108     72     59
D2V7, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          30                            51
  CLUS_2                          21                           118
  CLUS_3                          23                           108
  CLUS_4                          19                            72
  CLUS_5                          17                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q31.2) MUTATED       40     42     28
  AMP PEAK  2(2Q31.2) WILD-TYPE    150    100    158
D2V8, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          40                           150
  CLUS_2                          42                           100
  CLUS_3                          28                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q31.2) MUTATED       36     42     25
  AMP PEAK  2(2Q31.2) WILD-TYPE    105    147    118
D2V9, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          36                           105
  CLUS_2                          42                           147
  CLUS_3                          25                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q31.2) MUTATED       42     21     40
  AMP PEAK  2(2Q31.2) WILD-TYPE    129     83    158
D2V10, multiclass
        clus
vv       AMP PEAK  2(2Q31.2) MUTATED AMP PEAK  2(2Q31.2) WILD-TYPE
  CLUS_1                          42                           129
  CLUS_2                          21                            83
  CLUS_3                          40                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3Q26.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.33) MUTATED      171    118     56     35
  AMP PEAK  3(3Q26.33) WILD-TYPE     32     10     89     11
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                          171                             32
  CLUS_2                          118                             10
  CLUS_3                           56                             89
  CLUS_4                           35                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.33) MUTATED       48     74     45     82     62     63
  AMP PEAK  3(3Q26.33) WILD-TYPE     36     13     58      7     16     12
                                vv
clus                             CLUS_7
  AMP PEAK  3(3Q26.33) MUTATED        6
  AMP PEAK  3(3Q26.33) WILD-TYPE      0
D3V2, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                           48                             36
  CLUS_2                           74                             13
  CLUS_3                           45                             58
  CLUS_4                           82                              7
  CLUS_5                           62                             16
  CLUS_6                           63                             12
  CLUS_7                            6                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3Q26.33) MUTATED       36     22     28     17     50
  AMP PEAK  3(3Q26.33) WILD-TYPE     14      7      3     12     17
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                           36                             14
  CLUS_2                           22                              7
  CLUS_3                           28                              3
  CLUS_4                           17                             12
  CLUS_5                           50                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.33) MUTATED       52     65     36
  AMP PEAK  3(3Q26.33) WILD-TYPE     24     17     12
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                           52                             24
  CLUS_2                           65                             17
  CLUS_3                           36                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.33) MUTATED       99     58    148     71
  AMP PEAK  3(3Q26.33) WILD-TYPE     36     55     23     24
D3V5, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                           99                             36
  CLUS_2                           58                             55
  CLUS_3                          148                             23
  CLUS_4                           71                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.33) MUTATED      130     89    107     50
  AMP PEAK  3(3Q26.33) WILD-TYPE     46     14     63     15
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                          130                             46
  CLUS_2                           89                             14
  CLUS_3                          107                             63
  CLUS_4                           50                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3Q26.33) MUTATED       66     87    109     62     52
  AMP PEAK  3(3Q26.33) WILD-TYPE     15     52     22     29     24
D3V7, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                           66                             15
  CLUS_2                           87                             52
  CLUS_3                          109                             22
  CLUS_4                           62                             29
  CLUS_5                           52                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.33) MUTATED      140    106    130
  AMP PEAK  3(3Q26.33) WILD-TYPE     50     36     56
D3V8, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                          140                             50
  CLUS_2                          106                             36
  CLUS_3                          130                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.33) MUTATED      101    127    109
  AMP PEAK  3(3Q26.33) WILD-TYPE     40     62     34
D3V9, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                          101                             40
  CLUS_2                          127                             62
  CLUS_3                          109                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.33) MUTATED      125     67    145
  AMP PEAK  3(3Q26.33) WILD-TYPE     46     37     53
D3V10, multiclass
        clus
vv       AMP PEAK  3(3Q26.33) MUTATED AMP PEAK  3(3Q26.33) WILD-TYPE
  CLUS_1                          125                             46
  CLUS_2                           67                             37
  CLUS_3                          145                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5P15.33) MUTATED      116     82     24     18
  AMP PEAK  4(5P15.33) WILD-TYPE     87     46    121     28
D4V1, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                          116                             87
  CLUS_2                           82                             46
  CLUS_3                           24                            121
  CLUS_4                           18                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(5P15.33) MUTATED       27     52     27     50     35     46
  AMP PEAK  4(5P15.33) WILD-TYPE     57     35     76     39     43     29
                                vv
clus                             CLUS_7
  AMP PEAK  4(5P15.33) MUTATED        3
  AMP PEAK  4(5P15.33) WILD-TYPE      3
D4V2, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           27                             57
  CLUS_2                           52                             35
  CLUS_3                           27                             76
  CLUS_4                           50                             39
  CLUS_5                           35                             43
  CLUS_6                           46                             29
  CLUS_7                            3                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(5P15.33) MUTATED       19     11     17     13     25
  AMP PEAK  4(5P15.33) WILD-TYPE     31     18     14     16     42
D4V3, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           19                             31
  CLUS_2                           11                             18
  CLUS_3                           17                             14
  CLUS_4                           13                             16
  CLUS_5                           25                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED       30     36     19
  AMP PEAK  4(5P15.33) WILD-TYPE     46     46     29
D4V4, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           30                             46
  CLUS_2                           36                             46
  CLUS_3                           19                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5P15.33) MUTATED       74     37     82     46
  AMP PEAK  4(5P15.33) WILD-TYPE     61     76     89     49
D4V5, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           74                             61
  CLUS_2                           37                             76
  CLUS_3                           82                             89
  CLUS_4                           46                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5P15.33) MUTATED       82     53     75     29
  AMP PEAK  4(5P15.33) WILD-TYPE     94     50     95     36
D4V6, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           82                             94
  CLUS_2                           53                             50
  CLUS_3                           75                             95
  CLUS_4                           29                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(5P15.33) MUTATED       43     61     58     42     33
  AMP PEAK  4(5P15.33) WILD-TYPE     38     78     73     49     43
D4V7, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           43                             38
  CLUS_2                           61                             78
  CLUS_3                           58                             73
  CLUS_4                           42                             49
  CLUS_5                           33                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED       86     77     74
  AMP PEAK  4(5P15.33) WILD-TYPE    104     65    112
D4V8, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           86                            104
  CLUS_2                           77                             65
  CLUS_3                           74                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED       70     83     64
  AMP PEAK  4(5P15.33) WILD-TYPE     71    106     79
D4V9, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           70                             71
  CLUS_2                           83                            106
  CLUS_3                           64                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED       76     52     89
  AMP PEAK  4(5P15.33) WILD-TYPE     95     52    109
D4V10, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           76                             95
  CLUS_2                           52                             52
  CLUS_3                           89                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(5P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5P12) MUTATED       98     72     17     18
  AMP PEAK  5(5P12) WILD-TYPE    105     56    128     28
D5V1, multiclass
        clus
vv       AMP PEAK  5(5P12) MUTATED AMP PEAK  5(5P12) WILD-TYPE
  CLUS_1                        98                         105
  CLUS_2                        72                          56
  CLUS_3                        17                         128
  CLUS_4                        18                          28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  5(5P12) MUTATED       21     47     25     40     28     41      3
  AMP PEAK  5(5P12) WILD-TYPE     63     40     78     49     50     34      3
D5V2, multiclass
        clus
vv       AMP PEAK  5(5P12) MUTATED AMP PEAK  5(5P12) WILD-TYPE
  CLUS_1                        21                          63
  CLUS_2                        47                          40
  CLUS_3                        25                          78
  CLUS_4                        40                          49
  CLUS_5                        28                          50
  CLUS_6                        41                          34
  CLUS_7                         3                           3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5P12) MUTATED       14      9     17     11     25
  AMP PEAK  5(5P12) WILD-TYPE     36     20     14     18     42
D5V3, multiclass
        clus
vv       AMP PEAK  5(5P12) MUTATED AMP PEAK  5(5P12) WILD-TYPE
  CLUS_1                        14                          36
  CLUS_2                         9                          20
  CLUS_3                        17                          14
  CLUS_4                        11                          18
  CLUS_5                        25                          42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P12) MUTATED       23     30     23
  AMP PEAK  5(5P12) WILD-TYPE     53     52     25
D5V4, multiclass
        clus
vv       AMP PEAK  5(5P12) MUTATED AMP PEAK  5(5P12) WILD-TYPE
  CLUS_1                        23                          53
  CLUS_2                        30                          52
  CLUS_3                        23                          25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5P12) MUTATED       62     34     74     35
  AMP PEAK  5(5P12) WILD-TYPE     73     79     97     60
D5V5, multiclass
        clus
vv       AMP PEAK  5(5P12) MUTATED AMP PEAK  5(5P12) WILD-TYPE
  CLUS_1                        62                          73
  CLUS_2                        34                          79
  CLUS_3                        74                          97
  CLUS_4                        35                          60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5P12) MUTATED       69     50     62     24
  AMP PEAK  5(5P12) WILD-TYPE    107     53    108     41
D5V6, multiclass
        clus
vv       AMP PEAK  5(5P12) MUTATED AMP PEAK  5(5P12) WILD-TYPE
  CLUS_1                        69                         107
  CLUS_2                        50                          53
  CLUS_3                        62                         108
  CLUS_4                        24                          41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5P12) MUTATED       38     53     45     38     28
  AMP PEAK  5(5P12) WILD-TYPE     43     86     86     53     48
D5V7, multiclass
        clus
vv       AMP PEAK  5(5P12) MUTATED AMP PEAK  5(5P12) WILD-TYPE
  CLUS_1                        38                          43
  CLUS_2                        53                          86
  CLUS_3                        45                          86
  CLUS_4                        38                          53
  CLUS_5                        28                          48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P12) MUTATED       74     68     60
  AMP PEAK  5(5P12) WILD-TYPE    116     74    126
D5V8, multiclass
        clus
vv       AMP PEAK  5(5P12) MUTATED AMP PEAK  5(5P12) WILD-TYPE
  CLUS_1                        74                         116
  CLUS_2                        68                          74
  CLUS_3                        60                         126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P12) MUTATED       61     75     55
  AMP PEAK  5(5P12) WILD-TYPE     80    114     88
D5V9, multiclass
        clus
vv       AMP PEAK  5(5P12) MUTATED AMP PEAK  5(5P12) WILD-TYPE
  CLUS_1                        61                          80
  CLUS_2                        75                         114
  CLUS_3                        55                          88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P12) MUTATED       65     44     82
  AMP PEAK  5(5P12) WILD-TYPE    106     60    116
D5V10, multiclass
        clus
vv       AMP PEAK  5(5P12) MUTATED AMP PEAK  5(5P12) WILD-TYPE
  CLUS_1                        65                         106
  CLUS_2                        44                          60
  CLUS_3                        82                         116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(6P12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(6P12.1) MUTATED       59     30      9     12
  AMP PEAK  6(6P12.1) WILD-TYPE    144     98    136     34
D6V1, multiclass
        clus
vv       AMP PEAK  6(6P12.1) MUTATED AMP PEAK  6(6P12.1) WILD-TYPE
  CLUS_1                          59                           144
  CLUS_2                          30                            98
  CLUS_3                           9                           136
  CLUS_4                          12                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(6P12.1) MUTATED        9     27     15     24      7     26
  AMP PEAK  6(6P12.1) WILD-TYPE     75     60     88     65     71     49
                               vv
clus                            CLUS_7
  AMP PEAK  6(6P12.1) MUTATED        2
  AMP PEAK  6(6P12.1) WILD-TYPE      4
D6V2, multiclass
        clus
vv       AMP PEAK  6(6P12.1) MUTATED AMP PEAK  6(6P12.1) WILD-TYPE
  CLUS_1                           9                            75
  CLUS_2                          27                            60
  CLUS_3                          15                            88
  CLUS_4                          24                            65
  CLUS_5                           7                            71
  CLUS_6                          26                            49
  CLUS_7                           2                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(6P12.1) MUTATED        7      8      7      8     13
  AMP PEAK  6(6P12.1) WILD-TYPE     43     21     24     21     54
D6V3, multiclass
        clus
vv       AMP PEAK  6(6P12.1) MUTATED AMP PEAK  6(6P12.1) WILD-TYPE
  CLUS_1                           7                            43
  CLUS_2                           8                            21
  CLUS_3                           7                            24
  CLUS_4                           8                            21
  CLUS_5                          13                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6P12.1) MUTATED       16     18      9
  AMP PEAK  6(6P12.1) WILD-TYPE     60     64     39
D6V4, multiclass
        clus
vv       AMP PEAK  6(6P12.1) MUTATED AMP PEAK  6(6P12.1) WILD-TYPE
  CLUS_1                          16                            60
  CLUS_2                          18                            64
  CLUS_3                           9                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(6P12.1) MUTATED       36     16     35     21
  AMP PEAK  6(6P12.1) WILD-TYPE     99     97    136     74
D6V5, multiclass
        clus
vv       AMP PEAK  6(6P12.1) MUTATED AMP PEAK  6(6P12.1) WILD-TYPE
  CLUS_1                          36                            99
  CLUS_2                          16                            97
  CLUS_3                          35                           136
  CLUS_4                          21                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(6P12.1) MUTATED       39     28     35      6
  AMP PEAK  6(6P12.1) WILD-TYPE    137     75    135     59
D6V6, multiclass
        clus
vv       AMP PEAK  6(6P12.1) MUTATED AMP PEAK  6(6P12.1) WILD-TYPE
  CLUS_1                          39                           137
  CLUS_2                          28                            75
  CLUS_3                          35                           135
  CLUS_4                           6                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(6P12.1) MUTATED       19     34     23     16     17
  AMP PEAK  6(6P12.1) WILD-TYPE     62    105    108     75     59
D6V7, multiclass
        clus
vv       AMP PEAK  6(6P12.1) MUTATED AMP PEAK  6(6P12.1) WILD-TYPE
  CLUS_1                          19                            62
  CLUS_2                          34                           105
  CLUS_3                          23                           108
  CLUS_4                          16                            75
  CLUS_5                          17                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6P12.1) MUTATED       48     37     24
  AMP PEAK  6(6P12.1) WILD-TYPE    142    105    162
D6V8, multiclass
        clus
vv       AMP PEAK  6(6P12.1) MUTATED AMP PEAK  6(6P12.1) WILD-TYPE
  CLUS_1                          48                           142
  CLUS_2                          37                           105
  CLUS_3                          24                           162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6P12.1) MUTATED       35     40     26
  AMP PEAK  6(6P12.1) WILD-TYPE    106    149    117
D6V9, multiclass
        clus
vv       AMP PEAK  6(6P12.1) MUTATED AMP PEAK  6(6P12.1) WILD-TYPE
  CLUS_1                          35                           106
  CLUS_2                          40                           149
  CLUS_3                          26                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6P12.1) MUTATED       40     26     35
  AMP PEAK  6(6P12.1) WILD-TYPE    131     78    163
D6V10, multiclass
        clus
vv       AMP PEAK  6(6P12.1) MUTATED AMP PEAK  6(6P12.1) WILD-TYPE
  CLUS_1                          40                           131
  CLUS_2                          26                            78
  CLUS_3                          35                           163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(6Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(6Q12) MUTATED       54     25      7     10
  AMP PEAK  7(6Q12) WILD-TYPE    149    103    138     36
D7V1, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                        54                         149
  CLUS_2                        25                         103
  CLUS_3                         7                         138
  CLUS_4                        10                          36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  7(6Q12) MUTATED        9     20     14     24      4     23      2
  AMP PEAK  7(6Q12) WILD-TYPE     75     67     89     65     74     52      4
D7V2, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                         9                          75
  CLUS_2                        20                          67
  CLUS_3                        14                          89
  CLUS_4                        24                          65
  CLUS_5                         4                          74
  CLUS_6                        23                          52
  CLUS_7                         2                           4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(6Q12) MUTATED        7      6      6      8     13
  AMP PEAK  7(6Q12) WILD-TYPE     43     23     25     21     54
D7V3, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                         7                          43
  CLUS_2                         6                          23
  CLUS_3                         6                          25
  CLUS_4                         8                          21
  CLUS_5                        13                          54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6Q12) MUTATED       16     15      9
  AMP PEAK  7(6Q12) WILD-TYPE     60     67     39
D7V4, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                        16                          60
  CLUS_2                        15                          67
  CLUS_3                         9                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(6Q12) MUTATED       34     15     28     16
  AMP PEAK  7(6Q12) WILD-TYPE    101     98    143     79
D7V5, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                        34                         101
  CLUS_2                        15                          98
  CLUS_3                        28                         143
  CLUS_4                        16                          79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(6Q12) MUTATED       31     24     35      3
  AMP PEAK  7(6Q12) WILD-TYPE    145     79    135     62
D7V6, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                        31                         145
  CLUS_2                        24                          79
  CLUS_3                        35                         135
  CLUS_4                         3                          62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(6Q12) MUTATED       16     33     17     18     11
  AMP PEAK  7(6Q12) WILD-TYPE     65    106    114     73     65
D7V7, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                        16                          65
  CLUS_2                        33                         106
  CLUS_3                        17                         114
  CLUS_4                        18                          73
  CLUS_5                        11                          65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6Q12) MUTATED       39     29     27
  AMP PEAK  7(6Q12) WILD-TYPE    151    113    159
D7V8, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                        39                         151
  CLUS_2                        29                         113
  CLUS_3                        27                         159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6Q12) MUTATED       24     37     27
  AMP PEAK  7(6Q12) WILD-TYPE    117    152    116
D7V9, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                        24                         117
  CLUS_2                        37                         152
  CLUS_3                        27                         116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6Q12) MUTATED       36     19     33
  AMP PEAK  7(6Q12) WILD-TYPE    135     85    165
D7V10, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                        36                         135
  CLUS_2                        19                          85
  CLUS_3                        33                         165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7P11.2) MUTATED      111     68     26     17
  AMP PEAK  8(7P11.2) WILD-TYPE     92     60    119     29
D8V1, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                         111                            92
  CLUS_2                          68                            60
  CLUS_3                          26                           119
  CLUS_4                          17                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(7P11.2) MUTATED       30     48     41     54      6     40
  AMP PEAK  8(7P11.2) WILD-TYPE     54     39     62     35     72     35
                               vv
clus                            CLUS_7
  AMP PEAK  8(7P11.2) MUTATED        3
  AMP PEAK  8(7P11.2) WILD-TYPE      3
D8V2, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          30                            54
  CLUS_2                          48                            39
  CLUS_3                          41                            62
  CLUS_4                          54                            35
  CLUS_5                           6                            72
  CLUS_6                          40                            35
  CLUS_7                           3                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(7P11.2) MUTATED       24     11     16     14     33
  AMP PEAK  8(7P11.2) WILD-TYPE     26     18     15     15     34
D8V3, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          24                            26
  CLUS_2                          11                            18
  CLUS_3                          16                            15
  CLUS_4                          14                            15
  CLUS_5                          33                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P11.2) MUTATED       33     41     24
  AMP PEAK  8(7P11.2) WILD-TYPE     43     41     24
D8V4, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          33                            43
  CLUS_2                          41                            41
  CLUS_3                          24                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7P11.2) MUTATED       71     47     60     41
  AMP PEAK  8(7P11.2) WILD-TYPE     64     66    111     54
D8V5, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          71                            64
  CLUS_2                          47                            66
  CLUS_3                          60                           111
  CLUS_4                          41                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7P11.2) MUTATED       76     57     81      5
  AMP PEAK  8(7P11.2) WILD-TYPE    100     46     89     60
D8V6, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          76                           100
  CLUS_2                          57                            46
  CLUS_3                          81                            89
  CLUS_4                           5                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(7P11.2) MUTATED       48     60     36     42     33
  AMP PEAK  8(7P11.2) WILD-TYPE     33     79     95     49     43
D8V7, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          48                            33
  CLUS_2                          60                            79
  CLUS_3                          36                            95
  CLUS_4                          42                            49
  CLUS_5                          33                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P11.2) MUTATED       84     83     52
  AMP PEAK  8(7P11.2) WILD-TYPE    106     59    134
D8V8, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          84                           106
  CLUS_2                          83                            59
  CLUS_3                          52                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P11.2) MUTATED       68     78     55
  AMP PEAK  8(7P11.2) WILD-TYPE     73    111     88
D8V9, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          68                            73
  CLUS_2                          78                           111
  CLUS_3                          55                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P11.2) MUTATED       81     44     76
  AMP PEAK  8(7P11.2) WILD-TYPE     90     60    122
D8V10, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          81                            90
  CLUS_2                          44                            60
  CLUS_3                          76                           122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(7Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7Q21.3) MUTATED       88     55     17      9
  AMP PEAK  9(7Q21.3) WILD-TYPE    115     73    128     37
D9V1, multiclass
        clus
vv       AMP PEAK  9(7Q21.3) MUTATED AMP PEAK  9(7Q21.3) WILD-TYPE
  CLUS_1                          88                           115
  CLUS_2                          55                            73
  CLUS_3                          17                           128
  CLUS_4                           9                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(7Q21.3) MUTATED       14     39     24     60      9     22
  AMP PEAK  9(7Q21.3) WILD-TYPE     70     48     79     29     69     53
                               vv
clus                            CLUS_7
  AMP PEAK  9(7Q21.3) MUTATED        1
  AMP PEAK  9(7Q21.3) WILD-TYPE      5
D9V2, multiclass
        clus
vv       AMP PEAK  9(7Q21.3) MUTATED AMP PEAK  9(7Q21.3) WILD-TYPE
  CLUS_1                          14                            70
  CLUS_2                          39                            48
  CLUS_3                          24                            79
  CLUS_4                          60                            29
  CLUS_5                           9                            69
  CLUS_6                          22                            53
  CLUS_7                           1                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(7Q21.3) MUTATED       21     11     13     13     22
  AMP PEAK  9(7Q21.3) WILD-TYPE     29     18     18     16     45
D9V3, multiclass
        clus
vv       AMP PEAK  9(7Q21.3) MUTATED AMP PEAK  9(7Q21.3) WILD-TYPE
  CLUS_1                          21                            29
  CLUS_2                          11                            18
  CLUS_3                          13                            18
  CLUS_4                          13                            16
  CLUS_5                          22                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q21.3) MUTATED       30     35     15
  AMP PEAK  9(7Q21.3) WILD-TYPE     46     47     33
D9V4, multiclass
        clus
vv       AMP PEAK  9(7Q21.3) MUTATED AMP PEAK  9(7Q21.3) WILD-TYPE
  CLUS_1                          30                            46
  CLUS_2                          35                            47
  CLUS_3                          15                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7Q21.3) MUTATED       56     25     57     29
  AMP PEAK  9(7Q21.3) WILD-TYPE     79     88    114     66
D9V5, multiclass
        clus
vv       AMP PEAK  9(7Q21.3) MUTATED AMP PEAK  9(7Q21.3) WILD-TYPE
  CLUS_1                          56                            79
  CLUS_2                          25                            88
  CLUS_3                          57                           114
  CLUS_4                          29                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7Q21.3) MUTATED       47     52     60      8
  AMP PEAK  9(7Q21.3) WILD-TYPE    129     51    110     57
D9V6, multiclass
        clus
vv       AMP PEAK  9(7Q21.3) MUTATED AMP PEAK  9(7Q21.3) WILD-TYPE
  CLUS_1                          47                           129
  CLUS_2                          52                            51
  CLUS_3                          60                           110
  CLUS_4                           8                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(7Q21.3) MUTATED       37     40     37     29     23
  AMP PEAK  9(7Q21.3) WILD-TYPE     44     99     94     62     53
D9V7, multiclass
        clus
vv       AMP PEAK  9(7Q21.3) MUTATED AMP PEAK  9(7Q21.3) WILD-TYPE
  CLUS_1                          37                            44
  CLUS_2                          40                            99
  CLUS_3                          37                            94
  CLUS_4                          29                            62
  CLUS_5                          23                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q21.3) MUTATED       56     65     45
  AMP PEAK  9(7Q21.3) WILD-TYPE    134     77    141
D9V8, multiclass
        clus
vv       AMP PEAK  9(7Q21.3) MUTATED AMP PEAK  9(7Q21.3) WILD-TYPE
  CLUS_1                          56                           134
  CLUS_2                          65                            77
  CLUS_3                          45                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q21.3) MUTATED       50     52     49
  AMP PEAK  9(7Q21.3) WILD-TYPE     91    137     94
D9V9, multiclass
        clus
vv       AMP PEAK  9(7Q21.3) MUTATED AMP PEAK  9(7Q21.3) WILD-TYPE
  CLUS_1                          50                            91
  CLUS_2                          52                           137
  CLUS_3                          49                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q21.3) MUTATED       54     32     65
  AMP PEAK  9(7Q21.3) WILD-TYPE    117     72    133
D9V10, multiclass
        clus
vv       AMP PEAK  9(7Q21.3) MUTATED AMP PEAK  9(7Q21.3) WILD-TYPE
  CLUS_1                          54                           117
  CLUS_2                          32                            72
  CLUS_3                          65                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8P11.23) MUTATED       53     64     31     13
  AMP PEAK 10(8P11.23) WILD-TYPE    150     64    114     33
D10V1, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           53                            150
  CLUS_2                           64                             64
  CLUS_3                           31                            114
  CLUS_4                           13                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.23) MUTATED       20     34     24     35     26     22
  AMP PEAK 10(8P11.23) WILD-TYPE     64     53     79     54     52     53
                                vv
clus                             CLUS_7
  AMP PEAK 10(8P11.23) MUTATED        0
  AMP PEAK 10(8P11.23) WILD-TYPE      6
D10V2, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           20                             64
  CLUS_2                           34                             53
  CLUS_3                           24                             79
  CLUS_4                           35                             54
  CLUS_5                           26                             52
  CLUS_6                           22                             53
  CLUS_7                            0                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.23) MUTATED       14      9     11      9     19
  AMP PEAK 10(8P11.23) WILD-TYPE     36     20     20     20     48
D10V3, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           14                             36
  CLUS_2                            9                             20
  CLUS_3                           11                             20
  CLUS_4                            9                             20
  CLUS_5                           19                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.23) MUTATED       23     26     13
  AMP PEAK 10(8P11.23) WILD-TYPE     53     56     35
D10V4, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           23                             53
  CLUS_2                           26                             56
  CLUS_3                           13                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8P11.23) MUTATED       43     30     62     25
  AMP PEAK 10(8P11.23) WILD-TYPE     92     83    109     70
D10V5, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           43                             92
  CLUS_2                           30                             83
  CLUS_3                           62                            109
  CLUS_4                           25                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8P11.23) MUTATED       45     39     54     22
  AMP PEAK 10(8P11.23) WILD-TYPE    131     64    116     43
D10V6, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           45                            131
  CLUS_2                           39                             64
  CLUS_3                           54                            116
  CLUS_4                           22                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.23) MUTATED       33     34     46     23     23
  AMP PEAK 10(8P11.23) WILD-TYPE     48    105     85     68     53
D10V7, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           33                             48
  CLUS_2                           34                            105
  CLUS_3                           46                             85
  CLUS_4                           23                             68
  CLUS_5                           23                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.23) MUTATED       47     57     55
  AMP PEAK 10(8P11.23) WILD-TYPE    143     85    131
D10V8, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           47                            143
  CLUS_2                           57                             85
  CLUS_3                           55                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.23) MUTATED       38     56     49
  AMP PEAK 10(8P11.23) WILD-TYPE    103    133     94
D10V9, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           38                            103
  CLUS_2                           56                            133
  CLUS_3                           49                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.23) MUTATED       40     34     69
  AMP PEAK 10(8P11.23) WILD-TYPE    131     70    129
D10V10, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           40                            131
  CLUS_2                           34                             70
  CLUS_3                           69                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(8Q11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q11.21) MUTATED      154     66     57     33
  AMP PEAK 11(8Q11.21) WILD-TYPE     49     62     88     13
D11V1, multiclass
        clus
vv       AMP PEAK 11(8Q11.21) MUTATED AMP PEAK 11(8Q11.21) WILD-TYPE
  CLUS_1                          154                             49
  CLUS_2                           66                             62
  CLUS_3                           57                             88
  CLUS_4                           33                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8Q11.21) MUTATED       53     48     63     51     29     62
  AMP PEAK 11(8Q11.21) WILD-TYPE     31     39     40     38     49     13
                                vv
clus                             CLUS_7
  AMP PEAK 11(8Q11.21) MUTATED        4
  AMP PEAK 11(8Q11.21) WILD-TYPE      2
D11V2, multiclass
        clus
vv       AMP PEAK 11(8Q11.21) MUTATED AMP PEAK 11(8Q11.21) WILD-TYPE
  CLUS_1                           53                             31
  CLUS_2                           48                             39
  CLUS_3                           63                             40
  CLUS_4                           51                             38
  CLUS_5                           29                             49
  CLUS_6                           62                             13
  CLUS_7                            4                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8Q11.21) MUTATED       26     11     15     19     47
  AMP PEAK 11(8Q11.21) WILD-TYPE     24     18     16     10     20
D11V3, multiclass
        clus
vv       AMP PEAK 11(8Q11.21) MUTATED AMP PEAK 11(8Q11.21) WILD-TYPE
  CLUS_1                           26                             24
  CLUS_2                           11                             18
  CLUS_3                           15                             16
  CLUS_4                           19                             10
  CLUS_5                           47                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q11.21) MUTATED       41     47     30
  AMP PEAK 11(8Q11.21) WILD-TYPE     35     35     18
D11V4, multiclass
        clus
vv       AMP PEAK 11(8Q11.21) MUTATED AMP PEAK 11(8Q11.21) WILD-TYPE
  CLUS_1                           41                             35
  CLUS_2                           47                             35
  CLUS_3                           30                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q11.21) MUTATED       89     70     75     71
  AMP PEAK 11(8Q11.21) WILD-TYPE     46     43     96     24
D11V5, multiclass
        clus
vv       AMP PEAK 11(8Q11.21) MUTATED AMP PEAK 11(8Q11.21) WILD-TYPE
  CLUS_1                           89                             46
  CLUS_2                           70                             43
  CLUS_3                           75                             96
  CLUS_4                           71                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q11.21) MUTATED      123     51    109     22
  AMP PEAK 11(8Q11.21) WILD-TYPE     53     52     61     43
D11V6, multiclass
        clus
vv       AMP PEAK 11(8Q11.21) MUTATED AMP PEAK 11(8Q11.21) WILD-TYPE
  CLUS_1                          123                             53
  CLUS_2                           51                             52
  CLUS_3                          109                             61
  CLUS_4                           22                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8Q11.21) MUTATED       54     89     58     58     49
  AMP PEAK 11(8Q11.21) WILD-TYPE     27     50     73     33     27
D11V7, multiclass
        clus
vv       AMP PEAK 11(8Q11.21) MUTATED AMP PEAK 11(8Q11.21) WILD-TYPE
  CLUS_1                           54                             27
  CLUS_2                           89                             50
  CLUS_3                           58                             73
  CLUS_4                           58                             33
  CLUS_5                           49                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q11.21) MUTATED      129     83     96
  AMP PEAK 11(8Q11.21) WILD-TYPE     61     59     90
D11V8, multiclass
        clus
vv       AMP PEAK 11(8Q11.21) MUTATED AMP PEAK 11(8Q11.21) WILD-TYPE
  CLUS_1                          129                             61
  CLUS_2                           83                             59
  CLUS_3                           96                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q11.21) MUTATED       89    117     74
  AMP PEAK 11(8Q11.21) WILD-TYPE     52     72     69
D11V9, multiclass
        clus
vv       AMP PEAK 11(8Q11.21) MUTATED AMP PEAK 11(8Q11.21) WILD-TYPE
  CLUS_1                           89                             52
  CLUS_2                          117                             72
  CLUS_3                           74                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q11.21) MUTATED      116     63    101
  AMP PEAK 11(8Q11.21) WILD-TYPE     55     41     97
D11V10, multiclass
        clus
vv       AMP PEAK 11(8Q11.21) MUTATED AMP PEAK 11(8Q11.21) WILD-TYPE
  CLUS_1                          116                             55
  CLUS_2                           63                             41
  CLUS_3                          101                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED      185     89     74     38
  AMP PEAK 12(8Q24.21) WILD-TYPE     18     39     71      8
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          185                             18
  CLUS_2                           89                             39
  CLUS_3                           74                             71
  CLUS_4                           38                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED       64     64     77     71     35     69
  AMP PEAK 12(8Q24.21) WILD-TYPE     20     23     26     18     43      6
                                vv
clus                             CLUS_7
  AMP PEAK 12(8Q24.21) MUTATED        6
  AMP PEAK 12(8Q24.21) WILD-TYPE      0
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           64                             20
  CLUS_2                           64                             23
  CLUS_3                           77                             26
  CLUS_4                           71                             18
  CLUS_5                           35                             43
  CLUS_6                           69                              6
  CLUS_7                            6                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       32     15     25     22     57
  AMP PEAK 12(8Q24.21) WILD-TYPE     18     14      6      7     10
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           32                             18
  CLUS_2                           15                             14
  CLUS_3                           25                              6
  CLUS_4                           22                              7
  CLUS_5                           57                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       53     64     34
  AMP PEAK 12(8Q24.21) WILD-TYPE     23     18     14
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           53                             23
  CLUS_2                           64                             18
  CLUS_3                           34                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED      114     85    100     81
  AMP PEAK 12(8Q24.21) WILD-TYPE     21     28     71     14
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          114                             21
  CLUS_2                           85                             28
  CLUS_3                          100                             71
  CLUS_4                           81                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED      142     75    136     27
  AMP PEAK 12(8Q24.21) WILD-TYPE     34     28     34     38
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          142                             34
  CLUS_2                           75                             28
  CLUS_3                          136                             34
  CLUS_4                           27                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       67    110     74     77     55
  AMP PEAK 12(8Q24.21) WILD-TYPE     14     29     57     14     21
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           67                             14
  CLUS_2                          110                             29
  CLUS_3                           74                             57
  CLUS_4                           77                             14
  CLUS_5                           55                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED      154    109    120
  AMP PEAK 12(8Q24.21) WILD-TYPE     36     33     66
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          154                             36
  CLUS_2                          109                             33
  CLUS_3                          120                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED      110    149     90
  AMP PEAK 12(8Q24.21) WILD-TYPE     31     40     53
D12V9, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          110                             31
  CLUS_2                          149                             40
  CLUS_3                           90                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED      138     83    128
  AMP PEAK 12(8Q24.21) WILD-TYPE     33     21     70
D12V10, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          138                             33
  CLUS_2                           83                             21
  CLUS_3                          128                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(9P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(9P24.1) MUTATED       40     19     29     38
  AMP PEAK 13(9P24.1) WILD-TYPE    163    109    116      8
D13V1, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          40                           163
  CLUS_2                          19                           109
  CLUS_3                          29                           116
  CLUS_4                          38                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(9P24.1) MUTATED       15      9     45     19     20     17
  AMP PEAK 13(9P24.1) WILD-TYPE     69     78     58     70     58     58
                               vv
clus                            CLUS_7
  AMP PEAK 13(9P24.1) MUTATED        1
  AMP PEAK 13(9P24.1) WILD-TYPE      5
D13V2, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          15                            69
  CLUS_2                           9                            78
  CLUS_3                          45                            58
  CLUS_4                          19                            70
  CLUS_5                          20                            58
  CLUS_6                          17                            58
  CLUS_7                           1                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(9P24.1) MUTATED       12      6      5     13     16
  AMP PEAK 13(9P24.1) WILD-TYPE     38     23     26     16     51
D13V3, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          12                            38
  CLUS_2                           6                            23
  CLUS_3                           5                            26
  CLUS_4                          13                            16
  CLUS_5                          16                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P24.1) MUTATED       24     19      9
  AMP PEAK 13(9P24.1) WILD-TYPE     52     63     39
D13V4, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          24                            52
  CLUS_2                          19                            63
  CLUS_3                           9                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(9P24.1) MUTATED       31     42     27     22
  AMP PEAK 13(9P24.1) WILD-TYPE    104     71    144     73
D13V5, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          31                           104
  CLUS_2                          42                            71
  CLUS_3                          27                           144
  CLUS_4                          22                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(9P24.1) MUTATED       40     17     54     11
  AMP PEAK 13(9P24.1) WILD-TYPE    136     86    116     54
D13V6, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          40                           136
  CLUS_2                          17                            86
  CLUS_3                          54                           116
  CLUS_4                          11                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(9P24.1) MUTATED        9     44     32     27     14
  AMP PEAK 13(9P24.1) WILD-TYPE     72     95     99     64     62
D13V7, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           9                            72
  CLUS_2                          44                            95
  CLUS_3                          32                            99
  CLUS_4                          27                            64
  CLUS_5                          14                            62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P24.1) MUTATED       43     22     61
  AMP PEAK 13(9P24.1) WILD-TYPE    147    120    125
D13V8, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          43                           147
  CLUS_2                          22                           120
  CLUS_3                          61                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P24.1) MUTATED       30     55     35
  AMP PEAK 13(9P24.1) WILD-TYPE    111    134    108
D13V9, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          30                           111
  CLUS_2                          55                           134
  CLUS_3                          35                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P24.1) MUTATED       37     27     56
  AMP PEAK 13(9P24.1) WILD-TYPE    134     77    142
D13V10, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          37                           134
  CLUS_2                          27                            77
  CLUS_3                          56                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(9P23) MUTATED       37     21     29     37
  AMP PEAK 14(9P23) WILD-TYPE    166    107    116      9
D14V1, multiclass
        clus
vv       AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE
  CLUS_1                        37                         166
  CLUS_2                        21                         107
  CLUS_3                        29                         116
  CLUS_4                        37                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(9P23) MUTATED       16      9     43     19     19     17      1
  AMP PEAK 14(9P23) WILD-TYPE     68     78     60     70     59     58      5
D14V2, multiclass
        clus
vv       AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE
  CLUS_1                        16                          68
  CLUS_2                         9                          78
  CLUS_3                        43                          60
  CLUS_4                        19                          70
  CLUS_5                        19                          59
  CLUS_6                        17                          58
  CLUS_7                         1                           5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(9P23) MUTATED       12      7      6     12     17
  AMP PEAK 14(9P23) WILD-TYPE     38     22     25     17     50
D14V3, multiclass
        clus
vv       AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE
  CLUS_1                        12                          38
  CLUS_2                         7                          22
  CLUS_3                         6                          25
  CLUS_4                        12                          17
  CLUS_5                        17                          50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(9P23) MUTATED       22     23      9
  AMP PEAK 14(9P23) WILD-TYPE     54     59     39
D14V4, multiclass
        clus
vv       AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE
  CLUS_1                        22                          54
  CLUS_2                        23                          59
  CLUS_3                         9                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(9P23) MUTATED       32     40     26     23
  AMP PEAK 14(9P23) WILD-TYPE    103     73    145     72
D14V5, multiclass
        clus
vv       AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE
  CLUS_1                        32                         103
  CLUS_2                        40                          73
  CLUS_3                        26                         145
  CLUS_4                        23                          72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(9P23) MUTATED       42     16     52     11
  AMP PEAK 14(9P23) WILD-TYPE    134     87    118     54
D14V6, multiclass
        clus
vv       AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE
  CLUS_1                        42                         134
  CLUS_2                        16                          87
  CLUS_3                        52                         118
  CLUS_4                        11                          54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(9P23) MUTATED        8     43     31     28     14
  AMP PEAK 14(9P23) WILD-TYPE     73     96    100     63     62
D14V7, multiclass
        clus
vv       AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE
  CLUS_1                         8                          73
  CLUS_2                        43                          96
  CLUS_3                        31                         100
  CLUS_4                        28                          63
  CLUS_5                        14                          62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(9P23) MUTATED       45     21     58
  AMP PEAK 14(9P23) WILD-TYPE    145    121    128
D14V8, multiclass
        clus
vv       AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE
  CLUS_1                        45                         145
  CLUS_2                        21                         121
  CLUS_3                        58                         128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(9P23) MUTATED       30     53     33
  AMP PEAK 14(9P23) WILD-TYPE    111    136    110
D14V9, multiclass
        clus
vv       AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE
  CLUS_1                        30                         111
  CLUS_2                        53                         136
  CLUS_3                        33                         110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(9P23) MUTATED       37     28     51
  AMP PEAK 14(9P23) WILD-TYPE    134     76    147
D14V10, multiclass
        clus
vv       AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE
  CLUS_1                        37                         134
  CLUS_2                        28                          76
  CLUS_3                        51                         147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(9P13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(9P13.3) MUTATED       48     29     29     33
  AMP PEAK 15(9P13.3) WILD-TYPE    155     99    116     13
D15V1, multiclass
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  CLUS_1                          48                           155
  CLUS_2                          29                            99
  CLUS_3                          29                           116
  CLUS_4                          33                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(9P13.3) MUTATED       19     17     44     24     14     19
  AMP PEAK 15(9P13.3) WILD-TYPE     65     70     59     65     64     56
                               vv
clus                            CLUS_7
  AMP PEAK 15(9P13.3) MUTATED        2
  AMP PEAK 15(9P13.3) WILD-TYPE      4
D15V2, multiclass
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  CLUS_1                          19                            65
  CLUS_2                          17                            70
  CLUS_3                          44                            59
  CLUS_4                          24                            65
  CLUS_5                          14                            64
  CLUS_6                          19                            56
  CLUS_7                           2                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(9P13.3) MUTATED       14      8      5     12     23
  AMP PEAK 15(9P13.3) WILD-TYPE     36     21     26     17     44
D15V3, multiclass
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  CLUS_1                          14                            36
  CLUS_2                           8                            21
  CLUS_3                           5                            26
  CLUS_4                          12                            17
  CLUS_5                          23                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(9P13.3) MUTATED       27     26      9
  AMP PEAK 15(9P13.3) WILD-TYPE     49     56     39
D15V4, multiclass
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  CLUS_1                          27                            49
  CLUS_2                          26                            56
  CLUS_3                           9                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(9P13.3) MUTATED       30     43     30     33
  AMP PEAK 15(9P13.3) WILD-TYPE    105     70    141     62
D15V5, multiclass
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  CLUS_1                          30                           105
  CLUS_2                          43                            70
  CLUS_3                          30                           141
  CLUS_4                          33                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(9P13.3) MUTATED       51     24     55      6
  AMP PEAK 15(9P13.3) WILD-TYPE    125     79    115     59
D15V6, multiclass
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  CLUS_1                          51                           125
  CLUS_2                          24                            79
  CLUS_3                          55                           115
  CLUS_4                           6                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(9P13.3) MUTATED       16     44     30     25     24
  AMP PEAK 15(9P13.3) WILD-TYPE     65     95    101     66     52
D15V7, multiclass
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  CLUS_1                          16                            65
  CLUS_2                          44                            95
  CLUS_3                          30                           101
  CLUS_4                          25                            66
  CLUS_5                          24                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(9P13.3) MUTATED       59     28     52
  AMP PEAK 15(9P13.3) WILD-TYPE    131    114    134
D15V8, multiclass
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  CLUS_1                          59                           131
  CLUS_2                          28                           114
  CLUS_3                          52                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(9P13.3) MUTATED       40     54     36
  AMP PEAK 15(9P13.3) WILD-TYPE    101    135    107
D15V9, multiclass
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  CLUS_1                          40                           101
  CLUS_2                          54                           135
  CLUS_3                          36                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(9P13.3) MUTATED       53     26     51
  AMP PEAK 15(9P13.3) WILD-TYPE    118     78    147
D15V10, multiclass
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  CLUS_1                          53                           118
  CLUS_2                          26                            78
  CLUS_3                          51                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9Q34.3) MUTATED       59     55     30     33
  AMP PEAK 16(9Q34.3) WILD-TYPE    144     73    115     13
D16V1, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          59                           144
  CLUS_2                          55                            73
  CLUS_3                          30                           115
  CLUS_4                          33                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(9Q34.3) MUTATED       20     23     51     37     22     19
  AMP PEAK 16(9Q34.3) WILD-TYPE     64     64     52     52     56     56
                               vv
clus                            CLUS_7
  AMP PEAK 16(9Q34.3) MUTATED        5
  AMP PEAK 16(9Q34.3) WILD-TYPE      1
D16V2, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          20                            64
  CLUS_2                          23                            64
  CLUS_3                          51                            52
  CLUS_4                          37                            52
  CLUS_5                          22                            56
  CLUS_6                          19                            56
  CLUS_7                           5                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(9Q34.3) MUTATED       19     12      9     14     25
  AMP PEAK 16(9Q34.3) WILD-TYPE     31     17     22     15     42
D16V3, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          19                            31
  CLUS_2                          12                            17
  CLUS_3                           9                            22
  CLUS_4                          14                            15
  CLUS_5                          25                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9Q34.3) MUTATED       36     32     11
  AMP PEAK 16(9Q34.3) WILD-TYPE     40     50     37
D16V4, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          36                            40
  CLUS_2                          32                            50
  CLUS_3                          11                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9Q34.3) MUTATED       52     40     50     32
  AMP PEAK 16(9Q34.3) WILD-TYPE     83     73    121     63
D16V5, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          52                            83
  CLUS_2                          40                            73
  CLUS_3                          50                           121
  CLUS_4                          32                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9Q34.3) MUTATED       60     33     70     11
  AMP PEAK 16(9Q34.3) WILD-TYPE    116     70    100     54
D16V6, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          60                           116
  CLUS_2                          33                            70
  CLUS_3                          70                           100
  CLUS_4                          11                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(9Q34.3) MUTATED       19     51     45     31     30
  AMP PEAK 16(9Q34.3) WILD-TYPE     62     88     86     60     46
D16V7, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          19                            62
  CLUS_2                          51                            88
  CLUS_3                          45                            86
  CLUS_4                          31                            60
  CLUS_5                          30                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9Q34.3) MUTATED       67     38     71
  AMP PEAK 16(9Q34.3) WILD-TYPE    123    104    115
D16V8, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          67                           123
  CLUS_2                          38                           104
  CLUS_3                          71                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9Q34.3) MUTATED       47     64     50
  AMP PEAK 16(9Q34.3) WILD-TYPE     94    125     93
D16V9, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          47                            94
  CLUS_2                          64                           125
  CLUS_3                          50                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9Q34.3) MUTATED       59     36     66
  AMP PEAK 16(9Q34.3) WILD-TYPE    112     68    132
D16V10, multiclass
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  CLUS_1                          59                           112
  CLUS_2                          36                            68
  CLUS_3                          66                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(11P13) MUTATED       54     17     19     12
  AMP PEAK 17(11P13) WILD-TYPE    149    111    126     34
D17V1, multiclass
        clus
vv       AMP PEAK 17(11P13) MUTATED AMP PEAK 17(11P13) WILD-TYPE
  CLUS_1                         54                          149
  CLUS_2                         17                          111
  CLUS_3                         19                          126
  CLUS_4                         12                           34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 17(11P13) MUTATED        8     12     22     24      9     26      1
  AMP PEAK 17(11P13) WILD-TYPE     76     75     81     65     69     49      5
D17V2, multiclass
        clus
vv       AMP PEAK 17(11P13) MUTATED AMP PEAK 17(11P13) WILD-TYPE
  CLUS_1                          8                           76
  CLUS_2                         12                           75
  CLUS_3                         22                           81
  CLUS_4                         24                           65
  CLUS_5                          9                           69
  CLUS_6                         26                           49
  CLUS_7                          1                            5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11P13) MUTATED       14      7      2      5     14
  AMP PEAK 17(11P13) WILD-TYPE     36     22     29     24     53
D17V3, multiclass
        clus
vv       AMP PEAK 17(11P13) MUTATED AMP PEAK 17(11P13) WILD-TYPE
  CLUS_1                         14                           36
  CLUS_2                          7                           22
  CLUS_3                          2                           29
  CLUS_4                          5                           24
  CLUS_5                         14                           53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11P13) MUTATED       20     12     10
  AMP PEAK 17(11P13) WILD-TYPE     56     70     38
D17V4, multiclass
        clus
vv       AMP PEAK 17(11P13) MUTATED AMP PEAK 17(11P13) WILD-TYPE
  CLUS_1                         20                           56
  CLUS_2                         12                           70
  CLUS_3                         10                           38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(11P13) MUTATED       36     18     27     19
  AMP PEAK 17(11P13) WILD-TYPE     99     95    144     76
D17V5, multiclass
        clus
vv       AMP PEAK 17(11P13) MUTATED AMP PEAK 17(11P13) WILD-TYPE
  CLUS_1                         36                           99
  CLUS_2                         18                           95
  CLUS_3                         27                          144
  CLUS_4                         19                           76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(11P13) MUTATED       39     16     34     11
  AMP PEAK 17(11P13) WILD-TYPE    137     87    136     54
D17V6, multiclass
        clus
vv       AMP PEAK 17(11P13) MUTATED AMP PEAK 17(11P13) WILD-TYPE
  CLUS_1                         39                          137
  CLUS_2                         16                           87
  CLUS_3                         34                          136
  CLUS_4                         11                           54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11P13) MUTATED       15     33     22     16     13
  AMP PEAK 17(11P13) WILD-TYPE     66    106    109     75     63
D17V7, multiclass
        clus
vv       AMP PEAK 17(11P13) MUTATED AMP PEAK 17(11P13) WILD-TYPE
  CLUS_1                         15                           66
  CLUS_2                         33                          106
  CLUS_3                         22                          109
  CLUS_4                         16                           75
  CLUS_5                         13                           63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11P13) MUTATED       41     27     31
  AMP PEAK 17(11P13) WILD-TYPE    149    115    155
D17V8, multiclass
        clus
vv       AMP PEAK 17(11P13) MUTATED AMP PEAK 17(11P13) WILD-TYPE
  CLUS_1                         41                          149
  CLUS_2                         27                          115
  CLUS_3                         31                          155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11P13) MUTATED       28     38     26
  AMP PEAK 17(11P13) WILD-TYPE    113    151    117
D17V9, multiclass
        clus
vv       AMP PEAK 17(11P13) MUTATED AMP PEAK 17(11P13) WILD-TYPE
  CLUS_1                         28                          113
  CLUS_2                         38                          151
  CLUS_3                         26                          117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11P13) MUTATED       32     29     31
  AMP PEAK 17(11P13) WILD-TYPE    139     75    167
D17V10, multiclass
        clus
vv       AMP PEAK 17(11P13) MUTATED AMP PEAK 17(11P13) WILD-TYPE
  CLUS_1                         32                          139
  CLUS_2                         29                           75
  CLUS_3                         31                          167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(11Q13.3) MUTATED      135     59     22     13
  AMP PEAK 18(11Q13.3) WILD-TYPE     68     69    123     33
D18V1, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                          135                             68
  CLUS_2                           59                             69
  CLUS_3                           22                            123
  CLUS_4                           13                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(11Q13.3) MUTATED       30     38     37     53     15     51
  AMP PEAK 18(11Q13.3) WILD-TYPE     54     49     66     36     63     24
                                vv
clus                             CLUS_7
  AMP PEAK 18(11Q13.3) MUTATED        5
  AMP PEAK 18(11Q13.3) WILD-TYPE      1
D18V2, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           30                             54
  CLUS_2                           38                             49
  CLUS_3                           37                             66
  CLUS_4                           53                             36
  CLUS_5                           15                             63
  CLUS_6                           51                             24
  CLUS_7                            5                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(11Q13.3) MUTATED       23     12     16     12     35
  AMP PEAK 18(11Q13.3) WILD-TYPE     27     17     15     17     32
D18V3, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           23                             27
  CLUS_2                           12                             17
  CLUS_3                           16                             15
  CLUS_4                           12                             17
  CLUS_5                           35                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(11Q13.3) MUTATED       39     37     22
  AMP PEAK 18(11Q13.3) WILD-TYPE     37     45     26
D18V4, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           39                             37
  CLUS_2                           37                             45
  CLUS_3                           22                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(11Q13.3) MUTATED       84     45     54     44
  AMP PEAK 18(11Q13.3) WILD-TYPE     51     68    117     51
D18V5, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           84                             51
  CLUS_2                           45                             68
  CLUS_3                           54                            117
  CLUS_4                           44                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(11Q13.3) MUTATED       82     42     84     19
  AMP PEAK 18(11Q13.3) WILD-TYPE     94     61     86     46
D18V6, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           82                             94
  CLUS_2                           42                             61
  CLUS_3                           84                             86
  CLUS_4                           19                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(11Q13.3) MUTATED       42     67     45     45     28
  AMP PEAK 18(11Q13.3) WILD-TYPE     39     72     86     46     48
D18V7, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           42                             39
  CLUS_2                           67                             72
  CLUS_3                           45                             86
  CLUS_4                           45                             46
  CLUS_5                           28                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(11Q13.3) MUTATED       91     72     64
  AMP PEAK 18(11Q13.3) WILD-TYPE     99     70    122
D18V8, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           91                             99
  CLUS_2                           72                             70
  CLUS_3                           64                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(11Q13.3) MUTATED       68     78     59
  AMP PEAK 18(11Q13.3) WILD-TYPE     73    111     84
D18V9, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           68                             73
  CLUS_2                           78                            111
  CLUS_3                           59                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(11Q13.3) MUTATED       77     51     77
  AMP PEAK 18(11Q13.3) WILD-TYPE     94     53    121
D18V10, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           77                             94
  CLUS_2                           51                             53
  CLUS_3                           77                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12P13.33) MUTATED       77     62     12     16
  AMP PEAK 19(12P13.33) WILD-TYPE    126     66    133     30
D19V1, multiclass
        clus
vv       AMP PEAK 19(12P13.33) MUTATED AMP PEAK 19(12P13.33) WILD-TYPE
  CLUS_1                            77                             126
  CLUS_2                            62                              66
  CLUS_3                            12                             133
  CLUS_4                            16                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(12P13.33) MUTATED       14     40     15     44     23     30
  AMP PEAK 19(12P13.33) WILD-TYPE     70     47     88     45     55     45
                                 vv
clus                              CLUS_7
  AMP PEAK 19(12P13.33) MUTATED        1
  AMP PEAK 19(12P13.33) WILD-TYPE      5
D19V2, multiclass
        clus
vv       AMP PEAK 19(12P13.33) MUTATED AMP PEAK 19(12P13.33) WILD-TYPE
  CLUS_1                            14                              70
  CLUS_2                            40                              47
  CLUS_3                            15                              88
  CLUS_4                            44                              45
  CLUS_5                            23                              55
  CLUS_6                            30                              45
  CLUS_7                             1                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12P13.33) MUTATED       22     11     13     10     17
  AMP PEAK 19(12P13.33) WILD-TYPE     28     18     18     19     50
D19V3, multiclass
        clus
vv       AMP PEAK 19(12P13.33) MUTATED AMP PEAK 19(12P13.33) WILD-TYPE
  CLUS_1                            22                              28
  CLUS_2                            11                              18
  CLUS_3                            13                              18
  CLUS_4                            10                              19
  CLUS_5                            17                              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12P13.33) MUTATED       30     29     14
  AMP PEAK 19(12P13.33) WILD-TYPE     46     53     34
D19V4, multiclass
        clus
vv       AMP PEAK 19(12P13.33) MUTATED AMP PEAK 19(12P13.33) WILD-TYPE
  CLUS_1                            30                              46
  CLUS_2                            29                              53
  CLUS_3                            14                              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12P13.33) MUTATED       44     21     67     34
  AMP PEAK 19(12P13.33) WILD-TYPE     91     92    104     61
D19V5, multiclass
        clus
vv       AMP PEAK 19(12P13.33) MUTATED AMP PEAK 19(12P13.33) WILD-TYPE
  CLUS_1                            44                              91
  CLUS_2                            21                              92
  CLUS_3                            67                             104
  CLUS_4                            34                              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12P13.33) MUTATED       61     50     39     16
  AMP PEAK 19(12P13.33) WILD-TYPE    115     53    131     49
D19V6, multiclass
        clus
vv       AMP PEAK 19(12P13.33) MUTATED AMP PEAK 19(12P13.33) WILD-TYPE
  CLUS_1                            61                             115
  CLUS_2                            50                              53
  CLUS_3                            39                             131
  CLUS_4                            16                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12P13.33) MUTATED       32     34     52     29     19
  AMP PEAK 19(12P13.33) WILD-TYPE     49    105     79     62     57
D19V7, multiclass
        clus
vv       AMP PEAK 19(12P13.33) MUTATED AMP PEAK 19(12P13.33) WILD-TYPE
  CLUS_1                            32                              49
  CLUS_2                            34                             105
  CLUS_3                            52                              79
  CLUS_4                            29                              62
  CLUS_5                            19                              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12P13.33) MUTATED       64     53     49
  AMP PEAK 19(12P13.33) WILD-TYPE    126     89    137
D19V8, multiclass
        clus
vv       AMP PEAK 19(12P13.33) MUTATED AMP PEAK 19(12P13.33) WILD-TYPE
  CLUS_1                            64                             126
  CLUS_2                            53                              89
  CLUS_3                            49                             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12P13.33) MUTATED       49     57     45
  AMP PEAK 19(12P13.33) WILD-TYPE     92    132     98
D19V9, multiclass
        clus
vv       AMP PEAK 19(12P13.33) MUTATED AMP PEAK 19(12P13.33) WILD-TYPE
  CLUS_1                            49                              92
  CLUS_2                            57                             132
  CLUS_3                            45                              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12P13.33) MUTATED       58     33     60
  AMP PEAK 19(12P13.33) WILD-TYPE    113     71    138
D19V10, multiclass
        clus
vv       AMP PEAK 19(12P13.33) MUTATED AMP PEAK 19(12P13.33) WILD-TYPE
  CLUS_1                            58                             113
  CLUS_2                            33                              71
  CLUS_3                            60                             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(12Q15) MUTATED       46     37     10     10
  AMP PEAK 20(12Q15) WILD-TYPE    157     91    135     36
D20V1, multiclass
        clus
vv       AMP PEAK 20(12Q15) MUTATED AMP PEAK 20(12Q15) WILD-TYPE
  CLUS_1                         46                          157
  CLUS_2                         37                           91
  CLUS_3                         10                          135
  CLUS_4                         10                           36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 20(12Q15) MUTATED        8     22      9     29     13     21      1
  AMP PEAK 20(12Q15) WILD-TYPE     76     65     94     60     65     54      5
D20V2, multiclass
        clus
vv       AMP PEAK 20(12Q15) MUTATED AMP PEAK 20(12Q15) WILD-TYPE
  CLUS_1                          8                           76
  CLUS_2                         22                           65
  CLUS_3                          9                           94
  CLUS_4                         29                           60
  CLUS_5                         13                           65
  CLUS_6                         21                           54
  CLUS_7                          1                            5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(12Q15) MUTATED       11      9     10      5     11
  AMP PEAK 20(12Q15) WILD-TYPE     39     20     21     24     56
D20V3, multiclass
        clus
vv       AMP PEAK 20(12Q15) MUTATED AMP PEAK 20(12Q15) WILD-TYPE
  CLUS_1                         11                           39
  CLUS_2                          9                           20
  CLUS_3                         10                           21
  CLUS_4                          5                           24
  CLUS_5                         11                           56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(12Q15) MUTATED       16     23      7
  AMP PEAK 20(12Q15) WILD-TYPE     60     59     41
D20V4, multiclass
        clus
vv       AMP PEAK 20(12Q15) MUTATED AMP PEAK 20(12Q15) WILD-TYPE
  CLUS_1                         16                           60
  CLUS_2                         23                           59
  CLUS_3                          7                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(12Q15) MUTATED       24     15     39     24
  AMP PEAK 20(12Q15) WILD-TYPE    111     98    132     71
D20V5, multiclass
        clus
vv       AMP PEAK 20(12Q15) MUTATED AMP PEAK 20(12Q15) WILD-TYPE
  CLUS_1                         24                          111
  CLUS_2                         15                           98
  CLUS_3                         39                          132
  CLUS_4                         24                           71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(12Q15) MUTATED       35     34     25      8
  AMP PEAK 20(12Q15) WILD-TYPE    141     69    145     57
D20V6, multiclass
        clus
vv       AMP PEAK 20(12Q15) MUTATED AMP PEAK 20(12Q15) WILD-TYPE
  CLUS_1                         35                          141
  CLUS_2                         34                           69
  CLUS_3                         25                          145
  CLUS_4                          8                           57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(12Q15) MUTATED       18     26     29     16     14
  AMP PEAK 20(12Q15) WILD-TYPE     63    113    102     75     62
D20V7, multiclass
        clus
vv       AMP PEAK 20(12Q15) MUTATED AMP PEAK 20(12Q15) WILD-TYPE
  CLUS_1                         18                           63
  CLUS_2                         26                          113
  CLUS_3                         29                          102
  CLUS_4                         16                           75
  CLUS_5                         14                           62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(12Q15) MUTATED       39     33     31
  AMP PEAK 20(12Q15) WILD-TYPE    151    109    155
D20V8, multiclass
        clus
vv       AMP PEAK 20(12Q15) MUTATED AMP PEAK 20(12Q15) WILD-TYPE
  CLUS_1                         39                          151
  CLUS_2                         33                          109
  CLUS_3                         31                          155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(12Q15) MUTATED       23     40     32
  AMP PEAK 20(12Q15) WILD-TYPE    118    149    111
D20V9, multiclass
        clus
vv       AMP PEAK 20(12Q15) MUTATED AMP PEAK 20(12Q15) WILD-TYPE
  CLUS_1                         23                          118
  CLUS_2                         40                          149
  CLUS_3                         32                          111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(12Q15) MUTATED       35     18     42
  AMP PEAK 20(12Q15) WILD-TYPE    136     86    156
D20V10, multiclass
        clus
vv       AMP PEAK 20(12Q15) MUTATED AMP PEAK 20(12Q15) WILD-TYPE
  CLUS_1                         35                          136
  CLUS_2                         18                           86
  CLUS_3                         42                          156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(13Q22.1) MUTATED       74     16     11      4
  AMP PEAK 21(13Q22.1) WILD-TYPE    129    112    134     42
D21V1, multiclass
        clus
vv       AMP PEAK 21(13Q22.1) MUTATED AMP PEAK 21(13Q22.1) WILD-TYPE
  CLUS_1                           74                            129
  CLUS_2                           16                            112
  CLUS_3                           11                            134
  CLUS_4                            4                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(13Q22.1) MUTATED        9     23     12     17     12     30
  AMP PEAK 21(13Q22.1) WILD-TYPE     75     64     91     72     66     45
                                vv
clus                             CLUS_7
  AMP PEAK 21(13Q22.1) MUTATED        2
  AMP PEAK 21(13Q22.1) WILD-TYPE      4
D21V2, multiclass
        clus
vv       AMP PEAK 21(13Q22.1) MUTATED AMP PEAK 21(13Q22.1) WILD-TYPE
  CLUS_1                            9                             75
  CLUS_2                           23                             64
  CLUS_3                           12                             91
  CLUS_4                           17                             72
  CLUS_5                           12                             66
  CLUS_6                           30                             45
  CLUS_7                            2                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(13Q22.1) MUTATED       13      9      8      3     16
  AMP PEAK 21(13Q22.1) WILD-TYPE     37     20     23     26     51
D21V3, multiclass
        clus
vv       AMP PEAK 21(13Q22.1) MUTATED AMP PEAK 21(13Q22.1) WILD-TYPE
  CLUS_1                           13                             37
  CLUS_2                            9                             20
  CLUS_3                            8                             23
  CLUS_4                            3                             26
  CLUS_5                           16                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(13Q22.1) MUTATED       18     24      7
  AMP PEAK 21(13Q22.1) WILD-TYPE     58     58     41
D21V4, multiclass
        clus
vv       AMP PEAK 21(13Q22.1) MUTATED AMP PEAK 21(13Q22.1) WILD-TYPE
  CLUS_1                           18                             58
  CLUS_2                           24                             58
  CLUS_3                            7                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(13Q22.1) MUTATED       26     26     30     21
  AMP PEAK 21(13Q22.1) WILD-TYPE    109     87    141     74
D21V5, multiclass
        clus
vv       AMP PEAK 21(13Q22.1) MUTATED AMP PEAK 21(13Q22.1) WILD-TYPE
  CLUS_1                           26                            109
  CLUS_2                           26                             87
  CLUS_3                           30                            141
  CLUS_4                           21                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(13Q22.1) MUTATED       44     23     28      8
  AMP PEAK 21(13Q22.1) WILD-TYPE    132     80    142     57
D21V6, multiclass
        clus
vv       AMP PEAK 21(13Q22.1) MUTATED AMP PEAK 21(13Q22.1) WILD-TYPE
  CLUS_1                           44                            132
  CLUS_2                           23                             80
  CLUS_3                           28                            142
  CLUS_4                            8                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(13Q22.1) MUTATED       22     28     20     19     14
  AMP PEAK 21(13Q22.1) WILD-TYPE     59    111    111     72     62
D21V7, multiclass
        clus
vv       AMP PEAK 21(13Q22.1) MUTATED AMP PEAK 21(13Q22.1) WILD-TYPE
  CLUS_1                           22                             59
  CLUS_2                           28                            111
  CLUS_3                           20                            111
  CLUS_4                           19                             72
  CLUS_5                           14                             62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(13Q22.1) MUTATED       44     30     29
  AMP PEAK 21(13Q22.1) WILD-TYPE    146    112    157
D21V8, multiclass
        clus
vv       AMP PEAK 21(13Q22.1) MUTATED AMP PEAK 21(13Q22.1) WILD-TYPE
  CLUS_1                           44                            146
  CLUS_2                           30                            112
  CLUS_3                           29                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(13Q22.1) MUTATED       27     32     32
  AMP PEAK 21(13Q22.1) WILD-TYPE    114    157    111
D21V9, multiclass
        clus
vv       AMP PEAK 21(13Q22.1) MUTATED AMP PEAK 21(13Q22.1) WILD-TYPE
  CLUS_1                           27                            114
  CLUS_2                           32                            157
  CLUS_3                           32                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(13Q22.1) MUTATED       37     18     36
  AMP PEAK 21(13Q22.1) WILD-TYPE    134     86    162
D21V10, multiclass
        clus
vv       AMP PEAK 21(13Q22.1) MUTATED AMP PEAK 21(13Q22.1) WILD-TYPE
  CLUS_1                           37                            134
  CLUS_2                           18                             86
  CLUS_3                           36                            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(13Q34) MUTATED       71     14     13      8
  AMP PEAK 22(13Q34) WILD-TYPE    132    114    132     38
D22V1, multiclass
        clus
vv       AMP PEAK 22(13Q34) MUTATED AMP PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         71                          132
  CLUS_2                         14                          114
  CLUS_3                         13                          132
  CLUS_4                          8                           38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 22(13Q34) MUTATED       12     20     14     19     10     30      1
  AMP PEAK 22(13Q34) WILD-TYPE     72     67     89     70     68     45      5
D22V2, multiclass
        clus
vv       AMP PEAK 22(13Q34) MUTATED AMP PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         12                           72
  CLUS_2                         20                           67
  CLUS_3                         14                           89
  CLUS_4                         19                           70
  CLUS_5                         10                           68
  CLUS_6                         30                           45
  CLUS_7                          1                            5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(13Q34) MUTATED       13      5      6      4     14
  AMP PEAK 22(13Q34) WILD-TYPE     37     24     25     25     53
D22V3, multiclass
        clus
vv       AMP PEAK 22(13Q34) MUTATED AMP PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         13                           37
  CLUS_2                          5                           24
  CLUS_3                          6                           25
  CLUS_4                          4                           25
  CLUS_5                         14                           53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(13Q34) MUTATED       18     17      7
  AMP PEAK 22(13Q34) WILD-TYPE     58     65     41
D22V4, multiclass
        clus
vv       AMP PEAK 22(13Q34) MUTATED AMP PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         18                           58
  CLUS_2                         17                           65
  CLUS_3                          7                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(13Q34) MUTATED       28     28     27     22
  AMP PEAK 22(13Q34) WILD-TYPE    107     85    144     73
D22V5, multiclass
        clus
vv       AMP PEAK 22(13Q34) MUTATED AMP PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         28                          107
  CLUS_2                         28                           85
  CLUS_3                         27                          144
  CLUS_4                         22                           73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(13Q34) MUTATED       46     22     33      4
  AMP PEAK 22(13Q34) WILD-TYPE    130     81    137     61
D22V6, multiclass
        clus
vv       AMP PEAK 22(13Q34) MUTATED AMP PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         46                          130
  CLUS_2                         22                           81
  CLUS_3                         33                          137
  CLUS_4                          4                           61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(13Q34) MUTATED       23     29     18     20     14
  AMP PEAK 22(13Q34) WILD-TYPE     58    110    113     71     62
D22V7, multiclass
        clus
vv       AMP PEAK 22(13Q34) MUTATED AMP PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         23                           58
  CLUS_2                         29                          110
  CLUS_3                         18                          113
  CLUS_4                         20                           71
  CLUS_5                         14                           62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(13Q34) MUTATED       45     30     29
  AMP PEAK 22(13Q34) WILD-TYPE    145    112    157
D22V8, multiclass
        clus
vv       AMP PEAK 22(13Q34) MUTATED AMP PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         45                          145
  CLUS_2                         30                          112
  CLUS_3                         29                          157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(13Q34) MUTATED       31     41     24
  AMP PEAK 22(13Q34) WILD-TYPE    110    148    119
D22V9, multiclass
        clus
vv       AMP PEAK 22(13Q34) MUTATED AMP PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         31                          110
  CLUS_2                         41                          148
  CLUS_3                         24                          119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(13Q34) MUTATED       40     22     34
  AMP PEAK 22(13Q34) WILD-TYPE    131     82    164
D22V10, multiclass
        clus
vv       AMP PEAK 22(13Q34) MUTATED AMP PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         40                          131
  CLUS_2                         22                           82
  CLUS_3                         34                          164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(15Q26.3) MUTATED       54     33     13      5
  AMP PEAK 23(15Q26.3) WILD-TYPE    149     95    132     41
D23V1, multiclass
        clus
vv       AMP PEAK 23(15Q26.3) MUTATED AMP PEAK 23(15Q26.3) WILD-TYPE
  CLUS_1                           54                            149
  CLUS_2                           33                             95
  CLUS_3                           13                            132
  CLUS_4                            5                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(15Q26.3) MUTATED        9     21     19     26      8     20
  AMP PEAK 23(15Q26.3) WILD-TYPE     75     66     84     63     70     55
                                vv
clus                             CLUS_7
  AMP PEAK 23(15Q26.3) MUTATED        2
  AMP PEAK 23(15Q26.3) WILD-TYPE      4
D23V2, multiclass
        clus
vv       AMP PEAK 23(15Q26.3) MUTATED AMP PEAK 23(15Q26.3) WILD-TYPE
  CLUS_1                            9                             75
  CLUS_2                           21                             66
  CLUS_3                           19                             84
  CLUS_4                           26                             63
  CLUS_5                            8                             70
  CLUS_6                           20                             55
  CLUS_7                            2                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(15Q26.3) MUTATED       10      5      9      8     13
  AMP PEAK 23(15Q26.3) WILD-TYPE     40     24     22     21     54
D23V3, multiclass
        clus
vv       AMP PEAK 23(15Q26.3) MUTATED AMP PEAK 23(15Q26.3) WILD-TYPE
  CLUS_1                           10                             40
  CLUS_2                            5                             24
  CLUS_3                            9                             22
  CLUS_4                            8                             21
  CLUS_5                           13                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(15Q26.3) MUTATED       17     21      7
  AMP PEAK 23(15Q26.3) WILD-TYPE     59     61     41
D23V4, multiclass
        clus
vv       AMP PEAK 23(15Q26.3) MUTATED AMP PEAK 23(15Q26.3) WILD-TYPE
  CLUS_1                           17                             59
  CLUS_2                           21                             61
  CLUS_3                            7                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(15Q26.3) MUTATED       34     17     32     21
  AMP PEAK 23(15Q26.3) WILD-TYPE    101     96    139     74
D23V5, multiclass
        clus
vv       AMP PEAK 23(15Q26.3) MUTATED AMP PEAK 23(15Q26.3) WILD-TYPE
  CLUS_1                           34                            101
  CLUS_2                           17                             96
  CLUS_3                           32                            139
  CLUS_4                           21                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(15Q26.3) MUTATED       34     28     35      7
  AMP PEAK 23(15Q26.3) WILD-TYPE    142     75    135     58
D23V6, multiclass
        clus
vv       AMP PEAK 23(15Q26.3) MUTATED AMP PEAK 23(15Q26.3) WILD-TYPE
  CLUS_1                           34                            142
  CLUS_2                           28                             75
  CLUS_3                           35                            135
  CLUS_4                            7                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(15Q26.3) MUTATED       21     24     25     20     13
  AMP PEAK 23(15Q26.3) WILD-TYPE     60    115    106     71     63
D23V7, multiclass
        clus
vv       AMP PEAK 23(15Q26.3) MUTATED AMP PEAK 23(15Q26.3) WILD-TYPE
  CLUS_1                           21                             60
  CLUS_2                           24                            115
  CLUS_3                           25                            106
  CLUS_4                           20                             71
  CLUS_5                           13                             63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(15Q26.3) MUTATED       35     38     30
  AMP PEAK 23(15Q26.3) WILD-TYPE    155    104    156
D23V8, multiclass
        clus
vv       AMP PEAK 23(15Q26.3) MUTATED AMP PEAK 23(15Q26.3) WILD-TYPE
  CLUS_1                           35                            155
  CLUS_2                           38                            104
  CLUS_3                           30                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(15Q26.3) MUTATED       28     33     32
  AMP PEAK 23(15Q26.3) WILD-TYPE    113    156    111
D23V9, multiclass
        clus
vv       AMP PEAK 23(15Q26.3) MUTATED AMP PEAK 23(15Q26.3) WILD-TYPE
  CLUS_1                           28                            113
  CLUS_2                           33                            156
  CLUS_3                           32                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(15Q26.3) MUTATED       27     28     38
  AMP PEAK 23(15Q26.3) WILD-TYPE    144     76    160
D23V10, multiclass
        clus
vv       AMP PEAK 23(15Q26.3) MUTATED AMP PEAK 23(15Q26.3) WILD-TYPE
  CLUS_1                           27                            144
  CLUS_2                           28                             76
  CLUS_3                           38                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(17Q12) MUTATED       43     36      4      8
  AMP PEAK 24(17Q12) WILD-TYPE    160     92    141     38
D24V1, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         43                          160
  CLUS_2                         36                           92
  CLUS_3                          4                          141
  CLUS_4                          8                           38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 24(17Q12) MUTATED        6     23      7     29      6     20      0
  AMP PEAK 24(17Q12) WILD-TYPE     78     64     96     60     72     55      6
D24V2, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                          6                           78
  CLUS_2                         23                           64
  CLUS_3                          7                           96
  CLUS_4                         29                           60
  CLUS_5                          6                           72
  CLUS_6                         20                           55
  CLUS_7                          0                            6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q12) MUTATED        6      6      7      5     10
  AMP PEAK 24(17Q12) WILD-TYPE     44     23     24     24     57
D24V3, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                          6                           44
  CLUS_2                          6                           23
  CLUS_3                          7                           24
  CLUS_4                          5                           24
  CLUS_5                         10                           57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q12) MUTATED       14     14      6
  AMP PEAK 24(17Q12) WILD-TYPE     62     68     42
D24V4, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         14                           62
  CLUS_2                         14                           68
  CLUS_3                          6                           42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(17Q12) MUTATED       25      9     42     14
  AMP PEAK 24(17Q12) WILD-TYPE    110    104    129     81
D24V5, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         25                          110
  CLUS_2                          9                          104
  CLUS_3                         42                          129
  CLUS_4                         14                           81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(17Q12) MUTATED       24     36     23      7
  AMP PEAK 24(17Q12) WILD-TYPE    152     67    147     58
D24V6, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         24                          152
  CLUS_2                         36                           67
  CLUS_3                         23                          147
  CLUS_4                          7                           58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q12) MUTATED       24     22     17     18      9
  AMP PEAK 24(17Q12) WILD-TYPE     57    117    114     73     67
D24V7, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         24                           57
  CLUS_2                         22                          117
  CLUS_3                         17                          114
  CLUS_4                         18                           73
  CLUS_5                          9                           67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q12) MUTATED       31     41     18
  AMP PEAK 24(17Q12) WILD-TYPE    159    101    168
D24V8, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         31                          159
  CLUS_2                         41                          101
  CLUS_3                         18                          168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q12) MUTATED       28     33     23
  AMP PEAK 24(17Q12) WILD-TYPE    113    156    120
D24V9, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         28                          113
  CLUS_2                         33                          156
  CLUS_3                         23                          120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q12) MUTATED       30     24     30
  AMP PEAK 24(17Q12) WILD-TYPE    141     80    168
D24V10, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         30                          141
  CLUS_2                         24                           80
  CLUS_3                         30                          168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(18P11.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(18P11.31) MUTATED       73     56     20      7
  AMP PEAK 25(18P11.31) WILD-TYPE    130     72    125     39
D25V1, multiclass
        clus
vv       AMP PEAK 25(18P11.31) MUTATED AMP PEAK 25(18P11.31) WILD-TYPE
  CLUS_1                            73                             130
  CLUS_2                            56                              72
  CLUS_3                            20                             125
  CLUS_4                             7                              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(18P11.31) MUTATED        9     50     15     33     21     26
  AMP PEAK 25(18P11.31) WILD-TYPE     75     37     88     56     57     49
                                 vv
clus                              CLUS_7
  AMP PEAK 25(18P11.31) MUTATED        2
  AMP PEAK 25(18P11.31) WILD-TYPE      4
D25V2, multiclass
        clus
vv       AMP PEAK 25(18P11.31) MUTATED AMP PEAK 25(18P11.31) WILD-TYPE
  CLUS_1                             9                              75
  CLUS_2                            50                              37
  CLUS_3                            15                              88
  CLUS_4                            33                              56
  CLUS_5                            21                              57
  CLUS_6                            26                              49
  CLUS_7                             2                               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(18P11.31) MUTATED       15      5     14     10     19
  AMP PEAK 25(18P11.31) WILD-TYPE     35     24     17     19     48
D25V3, multiclass
        clus
vv       AMP PEAK 25(18P11.31) MUTATED AMP PEAK 25(18P11.31) WILD-TYPE
  CLUS_1                            15                              35
  CLUS_2                             5                              24
  CLUS_3                            14                              17
  CLUS_4                            10                              19
  CLUS_5                            19                              48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(18P11.31) MUTATED       21     29     13
  AMP PEAK 25(18P11.31) WILD-TYPE     55     53     35
D25V4, multiclass
        clus
vv       AMP PEAK 25(18P11.31) MUTATED AMP PEAK 25(18P11.31) WILD-TYPE
  CLUS_1                            21                              55
  CLUS_2                            29                              53
  CLUS_3                            13                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(18P11.31) MUTATED       42     23     65     24
  AMP PEAK 25(18P11.31) WILD-TYPE     93     90    106     71
D25V5, multiclass
        clus
vv       AMP PEAK 25(18P11.31) MUTATED AMP PEAK 25(18P11.31) WILD-TYPE
  CLUS_1                            42                              93
  CLUS_2                            23                              90
  CLUS_3                            65                             106
  CLUS_4                            24                              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(18P11.31) MUTATED       46     52     39     17
  AMP PEAK 25(18P11.31) WILD-TYPE    130     51    131     48
D25V6, multiclass
        clus
vv       AMP PEAK 25(18P11.31) MUTATED AMP PEAK 25(18P11.31) WILD-TYPE
  CLUS_1                            46                             130
  CLUS_2                            52                              51
  CLUS_3                            39                             131
  CLUS_4                            17                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(18P11.31) MUTATED       36     38     40     27     14
  AMP PEAK 25(18P11.31) WILD-TYPE     45    101     91     64     62
D25V7, multiclass
        clus
vv       AMP PEAK 25(18P11.31) MUTATED AMP PEAK 25(18P11.31) WILD-TYPE
  CLUS_1                            36                              45
  CLUS_2                            38                             101
  CLUS_3                            40                              91
  CLUS_4                            27                              64
  CLUS_5                            14                              62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(18P11.31) MUTATED       49     62     44
  AMP PEAK 25(18P11.31) WILD-TYPE    141     80    142
D25V8, multiclass
        clus
vv       AMP PEAK 25(18P11.31) MUTATED AMP PEAK 25(18P11.31) WILD-TYPE
  CLUS_1                            49                             141
  CLUS_2                            62                              80
  CLUS_3                            44                             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(18P11.31) MUTATED       42     55     40
  AMP PEAK 25(18P11.31) WILD-TYPE     99    134    103
D25V9, multiclass
        clus
vv       AMP PEAK 25(18P11.31) MUTATED AMP PEAK 25(18P11.31) WILD-TYPE
  CLUS_1                            42                              99
  CLUS_2                            55                             134
  CLUS_3                            40                             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(18P11.31) MUTATED       42     30     65
  AMP PEAK 25(18P11.31) WILD-TYPE    129     74    133
D25V10, multiclass
        clus
vv       AMP PEAK 25(18P11.31) MUTATED AMP PEAK 25(18P11.31) WILD-TYPE
  CLUS_1                            42                             129
  CLUS_2                            30                              74
  CLUS_3                            65                             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(18Q11.2) MUTATED       44     42     15      5
  AMP PEAK 26(18Q11.2) WILD-TYPE    159     86    130     41
D26V1, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           44                            159
  CLUS_2                           42                             86
  CLUS_3                           15                            130
  CLUS_4                            5                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(18Q11.2) MUTATED        7     27     12     26     17     15
  AMP PEAK 26(18Q11.2) WILD-TYPE     77     60     91     63     61     60
                                vv
clus                             CLUS_7
  AMP PEAK 26(18Q11.2) MUTATED        2
  AMP PEAK 26(18Q11.2) WILD-TYPE      4
D26V2, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                            7                             77
  CLUS_2                           27                             60
  CLUS_3                           12                             91
  CLUS_4                           26                             63
  CLUS_5                           17                             61
  CLUS_6                           15                             60
  CLUS_7                            2                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(18Q11.2) MUTATED       12      5      8      4     15
  AMP PEAK 26(18Q11.2) WILD-TYPE     38     24     23     25     52
D26V3, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           12                             38
  CLUS_2                            5                             24
  CLUS_3                            8                             23
  CLUS_4                            4                             25
  CLUS_5                           15                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(18Q11.2) MUTATED       17     21      6
  AMP PEAK 26(18Q11.2) WILD-TYPE     59     61     42
D26V4, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           17                             59
  CLUS_2                           21                             61
  CLUS_3                            6                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(18Q11.2) MUTATED       28     20     44     13
  AMP PEAK 26(18Q11.2) WILD-TYPE    107     93    127     82
D26V5, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           28                            107
  CLUS_2                           20                             93
  CLUS_3                           44                            127
  CLUS_4                           13                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(18Q11.2) MUTATED       29     33     29     14
  AMP PEAK 26(18Q11.2) WILD-TYPE    147     70    141     51
D26V6, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           29                            147
  CLUS_2                           33                             70
  CLUS_3                           29                            141
  CLUS_4                           14                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(18Q11.2) MUTATED       26     19     30     20     10
  AMP PEAK 26(18Q11.2) WILD-TYPE     55    120    101     71     66
D26V7, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           26                             55
  CLUS_2                           19                            120
  CLUS_3                           30                            101
  CLUS_4                           20                             71
  CLUS_5                           10                             66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(18Q11.2) MUTATED       33     40     32
  AMP PEAK 26(18Q11.2) WILD-TYPE    157    102    154
D26V8, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           33                            157
  CLUS_2                           40                            102
  CLUS_3                           32                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(18Q11.2) MUTATED       30     36     26
  AMP PEAK 26(18Q11.2) WILD-TYPE    111    153    117
D26V9, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           30                            111
  CLUS_2                           36                            153
  CLUS_3                           26                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(18Q11.2) MUTATED       30     20     42
  AMP PEAK 26(18Q11.2) WILD-TYPE    141     84    156
D26V10, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           30                            141
  CLUS_2                           20                             84
  CLUS_3                           42                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(20Q11.22) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20Q11.22) MUTATED      115     55     35     22
  AMP PEAK 27(20Q11.22) WILD-TYPE     88     73    110     24
D27V1, multiclass
        clus
vv       AMP PEAK 27(20Q11.22) MUTATED AMP PEAK 27(20Q11.22) WILD-TYPE
  CLUS_1                           115                              88
  CLUS_2                            55                              73
  CLUS_3                            35                             110
  CLUS_4                            22                              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(20Q11.22) MUTATED       30     44     29     45     27     49
  AMP PEAK 27(20Q11.22) WILD-TYPE     54     43     74     44     51     26
                                 vv
clus                              CLUS_7
  AMP PEAK 27(20Q11.22) MUTATED        3
  AMP PEAK 27(20Q11.22) WILD-TYPE      3
D27V2, multiclass
        clus
vv       AMP PEAK 27(20Q11.22) MUTATED AMP PEAK 27(20Q11.22) WILD-TYPE
  CLUS_1                            30                              54
  CLUS_2                            44                              43
  CLUS_3                            29                              74
  CLUS_4                            45                              44
  CLUS_5                            27                              51
  CLUS_6                            49                              26
  CLUS_7                             3                               3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(20Q11.22) MUTATED       22     19     14     15     22
  AMP PEAK 27(20Q11.22) WILD-TYPE     28     10     17     14     45
D27V3, multiclass
        clus
vv       AMP PEAK 27(20Q11.22) MUTATED AMP PEAK 27(20Q11.22) WILD-TYPE
  CLUS_1                            22                              28
  CLUS_2                            19                              10
  CLUS_3                            14                              17
  CLUS_4                            15                              14
  CLUS_5                            22                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q11.22) MUTATED       36     35     21
  AMP PEAK 27(20Q11.22) WILD-TYPE     40     47     27
D27V4, multiclass
        clus
vv       AMP PEAK 27(20Q11.22) MUTATED AMP PEAK 27(20Q11.22) WILD-TYPE
  CLUS_1                            36                              40
  CLUS_2                            35                              47
  CLUS_3                            21                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20Q11.22) MUTATED       61     40     71     51
  AMP PEAK 27(20Q11.22) WILD-TYPE     74     73    100     44
D27V5, multiclass
        clus
vv       AMP PEAK 27(20Q11.22) MUTATED AMP PEAK 27(20Q11.22) WILD-TYPE
  CLUS_1                            61                              74
  CLUS_2                            40                              73
  CLUS_3                            71                             100
  CLUS_4                            51                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20Q11.22) MUTATED       90     44     69     20
  AMP PEAK 27(20Q11.22) WILD-TYPE     86     59    101     45
D27V6, multiclass
        clus
vv       AMP PEAK 27(20Q11.22) MUTATED AMP PEAK 27(20Q11.22) WILD-TYPE
  CLUS_1                            90                              86
  CLUS_2                            44                              59
  CLUS_3                            69                             101
  CLUS_4                            20                              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(20Q11.22) MUTATED       37     63     53     38     34
  AMP PEAK 27(20Q11.22) WILD-TYPE     44     76     78     53     42
D27V7, multiclass
        clus
vv       AMP PEAK 27(20Q11.22) MUTATED AMP PEAK 27(20Q11.22) WILD-TYPE
  CLUS_1                            37                              44
  CLUS_2                            63                              76
  CLUS_3                            53                              78
  CLUS_4                            38                              53
  CLUS_5                            34                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q11.22) MUTATED       96     61     68
  AMP PEAK 27(20Q11.22) WILD-TYPE     94     81    118
D27V8, multiclass
        clus
vv       AMP PEAK 27(20Q11.22) MUTATED AMP PEAK 27(20Q11.22) WILD-TYPE
  CLUS_1                            96                              94
  CLUS_2                            61                              81
  CLUS_3                            68                             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q11.22) MUTATED       65     81     57
  AMP PEAK 27(20Q11.22) WILD-TYPE     76    108     86
D27V9, multiclass
        clus
vv       AMP PEAK 27(20Q11.22) MUTATED AMP PEAK 27(20Q11.22) WILD-TYPE
  CLUS_1                            65                              76
  CLUS_2                            81                             108
  CLUS_3                            57                              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q11.22) MUTATED       84     49     70
  AMP PEAK 27(20Q11.22) WILD-TYPE     87     55    128
D27V10, multiclass
        clus
vv       AMP PEAK 27(20Q11.22) MUTATED AMP PEAK 27(20Q11.22) WILD-TYPE
  CLUS_1                            84                              87
  CLUS_2                            49                              55
  CLUS_3                            70                             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(XQ28) MUTATED       89     32     18     11
  AMP PEAK 28(XQ28) WILD-TYPE    114     96    127     35
D28V1, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        89                         114
  CLUS_2                        32                          96
  CLUS_3                        18                         127
  CLUS_4                        11                          35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 28(XQ28) MUTATED       10     25     25     36     20     32      2
  AMP PEAK 28(XQ28) WILD-TYPE     74     62     78     53     58     43      4
D28V2, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        10                          74
  CLUS_2                        25                          62
  CLUS_3                        25                          78
  CLUS_4                        36                          53
  CLUS_5                        20                          58
  CLUS_6                        32                          43
  CLUS_7                         2                           4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(XQ28) MUTATED       12      8     11      9     23
  AMP PEAK 28(XQ28) WILD-TYPE     38     21     20     20     44
D28V3, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        12                          38
  CLUS_2                         8                          21
  CLUS_3                        11                          20
  CLUS_4                         9                          20
  CLUS_5                        23                          44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ28) MUTATED       20     31     12
  AMP PEAK 28(XQ28) WILD-TYPE     56     51     36
D28V4, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        20                          56
  CLUS_2                        31                          51
  CLUS_3                        12                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(XQ28) MUTATED       41     29     43     34
  AMP PEAK 28(XQ28) WILD-TYPE     94     84    128     61
D28V5, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        41                          94
  CLUS_2                        29                          84
  CLUS_3                        43                         128
  CLUS_4                        34                          61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(XQ28) MUTATED       58     31     43     15
  AMP PEAK 28(XQ28) WILD-TYPE    118     72    127     50
D28V6, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        58                         118
  CLUS_2                        31                          72
  CLUS_3                        43                         127
  CLUS_4                        15                          50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(XQ28) MUTATED       27     33     38     28     20
  AMP PEAK 28(XQ28) WILD-TYPE     54    106     93     63     56
D28V7, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        27                          54
  CLUS_2                        33                         106
  CLUS_3                        38                          93
  CLUS_4                        28                          63
  CLUS_5                        20                          56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ28) MUTATED       61     43     42
  AMP PEAK 28(XQ28) WILD-TYPE    129     99    144
D28V8, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        61                         129
  CLUS_2                        43                          99
  CLUS_3                        42                         144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ28) MUTATED       39     58     38
  AMP PEAK 28(XQ28) WILD-TYPE    102    131    105
D28V9, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        39                         102
  CLUS_2                        58                         131
  CLUS_3                        38                         105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ28) MUTATED       53     30     52
  AMP PEAK 28(XQ28) WILD-TYPE    118     74    146
D28V10, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        53                         118
  CLUS_2                        30                          74
  CLUS_3                        52                         146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  1(1P36.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED       36     43      9      7
  DEL PEAK  1(1P36.21) WILD-TYPE    167     85    136     39
D29V1, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           36                            167
  CLUS_2                           43                             85
  CLUS_3                            9                            136
  CLUS_4                            7                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.21) MUTATED        5     17     11     48      8      6
  DEL PEAK  1(1P36.21) WILD-TYPE     79     70     92     41     70     69
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.21) MUTATED        0
  DEL PEAK  1(1P36.21) WILD-TYPE      6
D29V2, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            5                             79
  CLUS_2                           17                             70
  CLUS_3                           11                             92
  CLUS_4                           48                             41
  CLUS_5                            8                             70
  CLUS_6                            6                             69
  CLUS_7                            0                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.21) MUTATED        9      6     14      3     13
  DEL PEAK  1(1P36.21) WILD-TYPE     41     23     17     26     54
D29V3, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            9                             41
  CLUS_2                            6                             23
  CLUS_3                           14                             17
  CLUS_4                            3                             26
  CLUS_5                           13                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       15     26      4
  DEL PEAK  1(1P36.21) WILD-TYPE     61     56     44
D29V4, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           15                             61
  CLUS_2                           26                             56
  CLUS_3                            4                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED       25      8     48     13
  DEL PEAK  1(1P36.21) WILD-TYPE    110    105    123     82
D29V5, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           25                            110
  CLUS_2                            8                            105
  CLUS_3                           48                            123
  CLUS_4                           13                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED       27     43     17      7
  DEL PEAK  1(1P36.21) WILD-TYPE    149     60    153     58
D29V6, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           27                            149
  CLUS_2                           43                             60
  CLUS_3                           17                            153
  CLUS_4                            7                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.21) MUTATED       22     15     31     14     10
  DEL PEAK  1(1P36.21) WILD-TYPE     59    124    100     77     66
D29V7, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           22                             59
  CLUS_2                           15                            124
  CLUS_3                           31                            100
  CLUS_4                           14                             77
  CLUS_5                           10                             66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       27     35     30
  DEL PEAK  1(1P36.21) WILD-TYPE    163    107    156
D29V8, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           27                            163
  CLUS_2                           35                            107
  CLUS_3                           30                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       23     22     37
  DEL PEAK  1(1P36.21) WILD-TYPE    118    167    106
D29V9, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           23                            118
  CLUS_2                           22                            167
  CLUS_3                           37                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       24     11     47
  DEL PEAK  1(1P36.21) WILD-TYPE    147     93    151
D29V10, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           24                            147
  CLUS_2                           11                             93
  CLUS_3                           47                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  2(1P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED       67     46      7     13
  DEL PEAK  2(1P13.2) WILD-TYPE    136     82    138     33
D30V1, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          67                           136
  CLUS_2                          46                            82
  CLUS_3                           7                           138
  CLUS_4                          13                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.2) MUTATED       13     27     15     55      6     14
  DEL PEAK  2(1P13.2) WILD-TYPE     71     60     88     34     72     61
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P13.2) MUTATED        3
  DEL PEAK  2(1P13.2) WILD-TYPE      3
D30V2, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          13                            71
  CLUS_2                          27                            60
  CLUS_3                          15                            88
  CLUS_4                          55                            34
  CLUS_5                           6                            72
  CLUS_6                          14                            61
  CLUS_7                           3                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED        7      6     15      9     23
  DEL PEAK  2(1P13.2) WILD-TYPE     43     23     16     20     44
D30V3, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           7                            43
  CLUS_2                           6                            23
  CLUS_3                          15                            16
  CLUS_4                           9                            20
  CLUS_5                          23                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       17     34      9
  DEL PEAK  2(1P13.2) WILD-TYPE     59     48     39
D30V4, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          17                            59
  CLUS_2                          34                            48
  CLUS_3                           9                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED       38     23     51     19
  DEL PEAK  2(1P13.2) WILD-TYPE     97     90    120     76
D30V5, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          38                            97
  CLUS_2                          23                            90
  CLUS_3                          51                           120
  CLUS_4                          19                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED       43     45     37      6
  DEL PEAK  2(1P13.2) WILD-TYPE    133     58    133     59
D30V6, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          43                           133
  CLUS_2                          45                            58
  CLUS_3                          37                           133
  CLUS_4                           6                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED       34     27     39     16     15
  DEL PEAK  2(1P13.2) WILD-TYPE     47    112     92     75     61
D30V7, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          34                            47
  CLUS_2                          27                           112
  CLUS_3                          39                            92
  CLUS_4                          16                            75
  CLUS_5                          15                            61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       47     53     31
  DEL PEAK  2(1P13.2) WILD-TYPE    143     89    155
D30V8, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          47                           143
  CLUS_2                          53                            89
  CLUS_3                          31                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       40     38     43
  DEL PEAK  2(1P13.2) WILD-TYPE    101    151    100
D30V9, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          40                           101
  CLUS_2                          38                           151
  CLUS_3                          43                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       44     23     54
  DEL PEAK  2(1P13.2) WILD-TYPE    127     81    144
D30V10, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          44                           127
  CLUS_2                          23                            81
  CLUS_3                          54                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED       28      7      4      9
  DEL PEAK  3(1Q44) WILD-TYPE    175    121    141     37
D31V1, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        28                         175
  CLUS_2                         7                         121
  CLUS_3                         4                         141
  CLUS_4                         9                          37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(1Q44) MUTATED        8      6     12      7      1     14      0
  DEL PEAK  3(1Q44) WILD-TYPE     76     81     91     82     77     61      6
D31V2, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         8                          76
  CLUS_2                         6                          81
  CLUS_3                        12                          91
  CLUS_4                         7                          82
  CLUS_5                         1                          77
  CLUS_6                        14                          61
  CLUS_7                         0                           6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED        4      3      3      1      8
  DEL PEAK  3(1Q44) WILD-TYPE     46     26     28     28     59
D31V3, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         4                          46
  CLUS_2                         3                          26
  CLUS_3                         3                          28
  CLUS_4                         1                          28
  CLUS_5                         8                          59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED        8      7      4
  DEL PEAK  3(1Q44) WILD-TYPE     68     75     44
D31V4, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         8                          68
  CLUS_2                         7                          75
  CLUS_3                         4                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED       14     16      6     10
  DEL PEAK  3(1Q44) WILD-TYPE    121     97    165     85
D31V5, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        14                         121
  CLUS_2                        16                          97
  CLUS_3                         6                         165
  CLUS_4                        10                          85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED       25      8     12      1
  DEL PEAK  3(1Q44) WILD-TYPE    151     95    158     64
D31V6, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        25                         151
  CLUS_2                         8                          95
  CLUS_3                        12                         158
  CLUS_4                         1                          64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED        4     23      3      7     10
  DEL PEAK  3(1Q44) WILD-TYPE     77    116    128     84     66
D31V7, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         4                          77
  CLUS_2                        23                         116
  CLUS_3                         3                         128
  CLUS_4                         7                          84
  CLUS_5                        10                          66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       25     11     11
  DEL PEAK  3(1Q44) WILD-TYPE    165    131    175
D31V8, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        25                         165
  CLUS_2                        11                         131
  CLUS_3                        11                         175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       14     20      8
  DEL PEAK  3(1Q44) WILD-TYPE    127    169    135
D31V9, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        14                         127
  CLUS_2                        20                         169
  CLUS_3                         8                         135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       18     10     14
  DEL PEAK  3(1Q44) WILD-TYPE    153     94    184
D31V10, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        18                         153
  CLUS_2                        10                          94
  CLUS_3                        14                         184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  4(2Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q21.2) MUTATED       35     15     16     12
  DEL PEAK  4(2Q21.2) WILD-TYPE    168    113    129     34
D32V1, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          35                           168
  CLUS_2                          15                           113
  CLUS_3                          16                           129
  CLUS_4                          12                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q21.2) MUTATED        8      7     19     17      9     17
  DEL PEAK  4(2Q21.2) WILD-TYPE     76     80     84     72     69     58
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q21.2) MUTATED        1
  DEL PEAK  4(2Q21.2) WILD-TYPE      5
D32V2, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                           8                            76
  CLUS_2                           7                            80
  CLUS_3                          19                            84
  CLUS_4                          17                            72
  CLUS_5                           9                            69
  CLUS_6                          17                            58
  CLUS_7                           1                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q21.2) MUTATED        5      3      2      5     12
  DEL PEAK  4(2Q21.2) WILD-TYPE     45     26     29     24     55
D32V3, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                           5                            45
  CLUS_2                           3                            26
  CLUS_3                           2                            29
  CLUS_4                           5                            24
  CLUS_5                          12                            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q21.2) MUTATED       11      7      9
  DEL PEAK  4(2Q21.2) WILD-TYPE     65     75     39
D32V4, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          11                            65
  CLUS_2                           7                            75
  CLUS_3                           9                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q21.2) MUTATED       29     21     17      8
  DEL PEAK  4(2Q21.2) WILD-TYPE    106     92    154     87
D32V5, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          29                           106
  CLUS_2                          21                            92
  CLUS_3                          17                           154
  CLUS_4                           8                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q21.2) MUTATED       24      6     40      5
  DEL PEAK  4(2Q21.2) WILD-TYPE    152     97    130     60
D32V6, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          24                           152
  CLUS_2                           6                            97
  CLUS_3                          40                           130
  CLUS_4                           5                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q21.2) MUTATED       17     28     16     10      6
  DEL PEAK  4(2Q21.2) WILD-TYPE     64    111    115     81     70
D32V7, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          17                            64
  CLUS_2                          28                           111
  CLUS_3                          16                           115
  CLUS_4                          10                            81
  CLUS_5                           6                            70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q21.2) MUTATED       24     27     26
  DEL PEAK  4(2Q21.2) WILD-TYPE    166    115    160
D32V8, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          24                           166
  CLUS_2                          27                           115
  CLUS_3                          26                           160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q21.2) MUTATED       15     31     22
  DEL PEAK  4(2Q21.2) WILD-TYPE    126    158    121
D32V9, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          15                           126
  CLUS_2                          31                           158
  CLUS_3                          22                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q21.2) MUTATED       21     21     26
  DEL PEAK  4(2Q21.2) WILD-TYPE    150     83    172
D32V10, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          21                           150
  CLUS_2                          21                            83
  CLUS_3                          26                           172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  5(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED       55     33     19     14
  DEL PEAK  5(2Q22.1) WILD-TYPE    148     95    126     32
D33V1, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          55                           148
  CLUS_2                          33                            95
  CLUS_3                          19                           126
  CLUS_4                          14                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q22.1) MUTATED       10     18     24     39     11     18
  DEL PEAK  5(2Q22.1) WILD-TYPE     74     69     79     50     67     57
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q22.1) MUTATED        1
  DEL PEAK  5(2Q22.1) WILD-TYPE      5
D33V2, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          10                            74
  CLUS_2                          18                            69
  CLUS_3                          24                            79
  CLUS_4                          39                            50
  CLUS_5                          11                            67
  CLUS_6                          18                            57
  CLUS_7                           1                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q22.1) MUTATED        8      7     10      6     11
  DEL PEAK  5(2Q22.1) WILD-TYPE     42     22     21     23     56
D33V3, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           8                            42
  CLUS_2                           7                            22
  CLUS_3                          10                            21
  CLUS_4                           6                            23
  CLUS_5                          11                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       14     17     11
  DEL PEAK  5(2Q22.1) WILD-TYPE     62     65     37
D33V4, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          14                            62
  CLUS_2                          17                            65
  CLUS_3                          11                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED       38     30     34     16
  DEL PEAK  5(2Q22.1) WILD-TYPE     97     83    137     79
D33V5, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          38                            97
  CLUS_2                          30                            83
  CLUS_3                          34                           137
  CLUS_4                          16                            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED       34     30     47      7
  DEL PEAK  5(2Q22.1) WILD-TYPE    142     73    123     58
D33V6, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          34                           142
  CLUS_2                          30                            73
  CLUS_3                          47                           123
  CLUS_4                           7                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q22.1) MUTATED       29     32     27     19     14
  DEL PEAK  5(2Q22.1) WILD-TYPE     52    107    104     72     62
D33V7, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          29                            52
  CLUS_2                          32                           107
  CLUS_3                          27                           104
  CLUS_4                          19                            72
  CLUS_5                          14                            62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       39     49     33
  DEL PEAK  5(2Q22.1) WILD-TYPE    151     93    153
D33V8, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          39                           151
  CLUS_2                          49                            93
  CLUS_3                          33                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       32     47     33
  DEL PEAK  5(2Q22.1) WILD-TYPE    109    142    110
D33V9, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          32                           109
  CLUS_2                          47                           142
  CLUS_3                          33                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       36     27     49
  DEL PEAK  5(2Q22.1) WILD-TYPE    135     77    149
D33V10, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          36                           135
  CLUS_2                          27                            77
  CLUS_3                          49                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  6(2Q36.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q36.2) MUTATED       62     58     17     20
  DEL PEAK  6(2Q36.2) WILD-TYPE    141     70    128     26
D34V1, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          62                           141
  CLUS_2                          58                            70
  CLUS_3                          17                           128
  CLUS_4                          20                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(2Q36.2) MUTATED        8     28     25     48     24     21
  DEL PEAK  6(2Q36.2) WILD-TYPE     76     59     78     41     54     54
                               vv
clus                            CLUS_7
  DEL PEAK  6(2Q36.2) MUTATED        3
  DEL PEAK  6(2Q36.2) WILD-TYPE      3
D34V2, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                           8                            76
  CLUS_2                          28                            59
  CLUS_3                          25                            78
  CLUS_4                          48                            41
  CLUS_5                          24                            54
  CLUS_6                          21                            54
  CLUS_7                           3                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q36.2) MUTATED       14     10     15      6     19
  DEL PEAK  6(2Q36.2) WILD-TYPE     36     19     16     23     48
D34V3, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          14                            36
  CLUS_2                          10                            19
  CLUS_3                          15                            16
  CLUS_4                           6                            23
  CLUS_5                          19                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q36.2) MUTATED       22     27     15
  DEL PEAK  6(2Q36.2) WILD-TYPE     54     55     33
D34V4, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          22                            54
  CLUS_2                          27                            55
  CLUS_3                          15                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q36.2) MUTATED       49     25     60     20
  DEL PEAK  6(2Q36.2) WILD-TYPE     86     88    111     75
D34V5, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          49                            86
  CLUS_2                          25                            88
  CLUS_3                          60                           111
  CLUS_4                          20                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q36.2) MUTATED       50     42     46     16
  DEL PEAK  6(2Q36.2) WILD-TYPE    126     61    124     49
D34V6, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          50                           126
  CLUS_2                          42                            61
  CLUS_3                          46                           124
  CLUS_4                          16                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q36.2) MUTATED       30     41     46     19     18
  DEL PEAK  6(2Q36.2) WILD-TYPE     51     98     85     72     58
D34V7, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          30                            51
  CLUS_2                          41                            98
  CLUS_3                          46                            85
  CLUS_4                          19                            72
  CLUS_5                          18                            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q36.2) MUTATED       49     55     50
  DEL PEAK  6(2Q36.2) WILD-TYPE    141     87    136
D34V8, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          49                           141
  CLUS_2                          55                            87
  CLUS_3                          50                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q36.2) MUTATED       34     55     51
  DEL PEAK  6(2Q36.2) WILD-TYPE    107    134     92
D34V9, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          34                           107
  CLUS_2                          55                           134
  CLUS_3                          51                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q36.2) MUTATED       42     29     69
  DEL PEAK  6(2Q36.2) WILD-TYPE    129     75    129
D34V10, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          42                           129
  CLUS_2                          29                            75
  CLUS_3                          69                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  7(3P26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.2) MUTATED      190     96     30     32
  DEL PEAK  7(3P26.2) WILD-TYPE     13     32    115     14
D35V1, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                         190                            13
  CLUS_2                          96                            32
  CLUS_3                          30                           115
  CLUS_4                          32                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P26.2) MUTATED       50     73     55     76     19     69
  DEL PEAK  7(3P26.2) WILD-TYPE     34     14     48     13     59      6
                               vv
clus                            CLUS_7
  DEL PEAK  7(3P26.2) MUTATED        6
  DEL PEAK  7(3P26.2) WILD-TYPE      0
D35V2, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                          50                            34
  CLUS_2                          73                            14
  CLUS_3                          55                            48
  CLUS_4                          76                            13
  CLUS_5                          19                            59
  CLUS_6                          69                             6
  CLUS_7                           6                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P26.2) MUTATED       35     19     24     19     56
  DEL PEAK  7(3P26.2) WILD-TYPE     15     10      7     10     11
D35V3, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                          35                            15
  CLUS_2                          19                            10
  CLUS_3                          24                             7
  CLUS_4                          19                            10
  CLUS_5                          56                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.2) MUTATED       52     66     35
  DEL PEAK  7(3P26.2) WILD-TYPE     24     16     13
D35V4, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                          52                            24
  CLUS_2                          66                            16
  CLUS_3                          35                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.2) MUTATED      103     64    100     76
  DEL PEAK  7(3P26.2) WILD-TYPE     32     49     71     19
D35V5, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                         103                            32
  CLUS_2                          64                            49
  CLUS_3                         100                            71
  CLUS_4                          76                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.2) MUTATED      134     83    107     19
  DEL PEAK  7(3P26.2) WILD-TYPE     42     20     63     46
D35V6, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                         134                            42
  CLUS_2                          83                            20
  CLUS_3                         107                            63
  CLUS_4                          19                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P26.2) MUTATED       68     85     67     68     58
  DEL PEAK  7(3P26.2) WILD-TYPE     13     54     64     23     18
D35V7, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                          68                            13
  CLUS_2                          85                            54
  CLUS_3                          67                            64
  CLUS_4                          68                            23
  CLUS_5                          58                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.2) MUTATED      144    106     96
  DEL PEAK  7(3P26.2) WILD-TYPE     46     36     90
D35V8, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                         144                            46
  CLUS_2                         106                            36
  CLUS_3                          96                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.2) MUTATED      105    118     92
  DEL PEAK  7(3P26.2) WILD-TYPE     36     71     51
D35V9, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                         105                            36
  CLUS_2                         118                            71
  CLUS_3                          92                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.2) MUTATED      127     68    120
  DEL PEAK  7(3P26.2) WILD-TYPE     44     36     78
D35V10, multiclass
        clus
vv       DEL PEAK  7(3P26.2) MUTATED DEL PEAK  7(3P26.2) WILD-TYPE
  CLUS_1                         127                            44
  CLUS_2                          68                            36
  CLUS_3                         120                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  8(3P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P24.1) MUTATED      191    107     36     34
  DEL PEAK  8(3P24.1) WILD-TYPE     12     21    109     12
D36V1, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                         191                            12
  CLUS_2                         107                            21
  CLUS_3                          36                           109
  CLUS_4                          34                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P24.1) MUTATED       50     78     56     80     29     69
  DEL PEAK  8(3P24.1) WILD-TYPE     34      9     47      9     49      6
                               vv
clus                            CLUS_7
  DEL PEAK  8(3P24.1) MUTATED        6
  DEL PEAK  8(3P24.1) WILD-TYPE      0
D36V2, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                          50                            34
  CLUS_2                          78                             9
  CLUS_3                          56                            47
  CLUS_4                          80                             9
  CLUS_5                          29                            49
  CLUS_6                          69                             6
  CLUS_7                           6                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P24.1) MUTATED       35     21     25     20     57
  DEL PEAK  8(3P24.1) WILD-TYPE     15      8      6      9     10
D36V3, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                          35                            15
  CLUS_2                          21                             8
  CLUS_3                          25                             6
  CLUS_4                          20                             9
  CLUS_5                          57                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P24.1) MUTATED       54     69     35
  DEL PEAK  8(3P24.1) WILD-TYPE     22     13     13
D36V4, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                          54                            22
  CLUS_2                          69                            13
  CLUS_3                          35                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P24.1) MUTATED      105     66    116     76
  DEL PEAK  8(3P24.1) WILD-TYPE     30     47     55     19
D36V5, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                         105                            30
  CLUS_2                          66                            47
  CLUS_3                         116                            55
  CLUS_4                          76                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P24.1) MUTATED      137     91    108     27
  DEL PEAK  8(3P24.1) WILD-TYPE     39     12     62     38
D36V6, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                         137                            39
  CLUS_2                          91                            12
  CLUS_3                         108                            62
  CLUS_4                          27                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P24.1) MUTATED       70     87     78     70     60
  DEL PEAK  8(3P24.1) WILD-TYPE     11     52     53     21     16
D36V7, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                          70                            11
  CLUS_2                          87                            52
  CLUS_3                          78                            53
  CLUS_4                          70                            21
  CLUS_5                          60                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P24.1) MUTATED      147    110    108
  DEL PEAK  8(3P24.1) WILD-TYPE     43     32     78
D36V8, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                         147                            43
  CLUS_2                         110                            32
  CLUS_3                         108                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P24.1) MUTATED      109    119    104
  DEL PEAK  8(3P24.1) WILD-TYPE     32     70     39
D36V9, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                         109                            32
  CLUS_2                         119                            70
  CLUS_3                         104                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P24.1) MUTATED      130     70    132
  DEL PEAK  8(3P24.1) WILD-TYPE     41     34     66
D36V10, multiclass
        clus
vv       DEL PEAK  8(3P24.1) MUTATED DEL PEAK  8(3P24.1) WILD-TYPE
  CLUS_1                         130                            41
  CLUS_2                          70                            34
  CLUS_3                         132                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  9(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P14.2) MUTATED      190    110     36     36
  DEL PEAK  9(3P14.2) WILD-TYPE     13     18    109     10
D37V1, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                         190                            13
  CLUS_2                         110                            18
  CLUS_3                          36                           109
  CLUS_4                          36                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P14.2) MUTATED       50     79     54     82     34     67
  DEL PEAK  9(3P14.2) WILD-TYPE     34      8     49      7     44      8
                               vv
clus                            CLUS_7
  DEL PEAK  9(3P14.2) MUTATED        6
  DEL PEAK  9(3P14.2) WILD-TYPE      0
D37V2, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          50                            34
  CLUS_2                          79                             8
  CLUS_3                          54                            49
  CLUS_4                          82                             7
  CLUS_5                          34                            44
  CLUS_6                          67                             8
  CLUS_7                           6                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P14.2) MUTATED       36     22     26     20     56
  DEL PEAK  9(3P14.2) WILD-TYPE     14      7      5      9     11
D37V3, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          36                            14
  CLUS_2                          22                             7
  CLUS_3                          26                             5
  CLUS_4                          20                             9
  CLUS_5                          56                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED       55     69     36
  DEL PEAK  9(3P14.2) WILD-TYPE     21     13     12
D37V4, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          55                            21
  CLUS_2                          69                            13
  CLUS_3                          36                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P14.2) MUTATED      105     67    121     74
  DEL PEAK  9(3P14.2) WILD-TYPE     30     46     50     21
D37V5, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                         105                            30
  CLUS_2                          67                            46
  CLUS_3                         121                            50
  CLUS_4                          74                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P14.2) MUTATED      135     93    108     31
  DEL PEAK  9(3P14.2) WILD-TYPE     41     10     62     34
D37V6, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                         135                            41
  CLUS_2                          93                            10
  CLUS_3                         108                            62
  CLUS_4                          31                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P14.2) MUTATED       70     92     82     68     57
  DEL PEAK  9(3P14.2) WILD-TYPE     11     47     49     23     19
D37V7, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          70                            11
  CLUS_2                          92                            47
  CLUS_3                          82                            49
  CLUS_4                          68                            23
  CLUS_5                          57                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED      145    111    113
  DEL PEAK  9(3P14.2) WILD-TYPE     45     31     73
D37V8, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                         145                            45
  CLUS_2                         111                            31
  CLUS_3                         113                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED      106    121    108
  DEL PEAK  9(3P14.2) WILD-TYPE     35     68     35
D37V9, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                         106                            35
  CLUS_2                         121                            68
  CLUS_3                         108                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED      129     69    137
  DEL PEAK  9(3P14.2) WILD-TYPE     42     35     61
D37V10, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                         129                            42
  CLUS_2                          69                            35
  CLUS_3                         137                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 10(3P12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3P12.1) MUTATED      180    104     28     31
  DEL PEAK 10(3P12.1) WILD-TYPE     23     24    117     15
D38V1, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                         180                            23
  CLUS_2                         104                            24
  CLUS_3                          28                           117
  CLUS_4                          31                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3P12.1) MUTATED       46     75     51     82     24     60
  DEL PEAK 10(3P12.1) WILD-TYPE     38     12     52      7     54     15
                               vv
clus                            CLUS_7
  DEL PEAK 10(3P12.1) MUTATED        5
  DEL PEAK 10(3P12.1) WILD-TYPE      1
D38V2, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                          46                            38
  CLUS_2                          75                            12
  CLUS_3                          51                            52
  CLUS_4                          82                             7
  CLUS_5                          24                            54
  CLUS_6                          60                            15
  CLUS_7                           5                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3P12.1) MUTATED       35     20     24     19     52
  DEL PEAK 10(3P12.1) WILD-TYPE     15      9      7     10     15
D38V3, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                          35                            15
  CLUS_2                          20                             9
  CLUS_3                          24                             7
  CLUS_4                          19                            10
  CLUS_5                          52                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3P12.1) MUTATED       54     61     35
  DEL PEAK 10(3P12.1) WILD-TYPE     22     21     13
D38V4, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                          54                            22
  CLUS_2                          61                            21
  CLUS_3                          35                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3P12.1) MUTATED      101     60    109     69
  DEL PEAK 10(3P12.1) WILD-TYPE     34     53     62     26
D38V5, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                         101                            34
  CLUS_2                          60                            53
  CLUS_3                         109                            62
  CLUS_4                          69                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3P12.1) MUTATED      124     88    104     23
  DEL PEAK 10(3P12.1) WILD-TYPE     52     15     66     42
D38V6, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                         124                            52
  CLUS_2                          88                            15
  CLUS_3                         104                            66
  CLUS_4                          23                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3P12.1) MUTATED       68     83     72     63     54
  DEL PEAK 10(3P12.1) WILD-TYPE     13     56     59     28     22
D38V7, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                          68                            13
  CLUS_2                          83                            56
  CLUS_3                          72                            59
  CLUS_4                          63                            28
  CLUS_5                          54                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3P12.1) MUTATED      130    107    103
  DEL PEAK 10(3P12.1) WILD-TYPE     60     35     83
D38V8, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                         130                            60
  CLUS_2                         107                            35
  CLUS_3                         103                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3P12.1) MUTATED      100    112     95
  DEL PEAK 10(3P12.1) WILD-TYPE     41     77     48
D38V9, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                         100                            41
  CLUS_2                         112                            77
  CLUS_3                          95                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3P12.1) MUTATED      117     66    124
  DEL PEAK 10(3P12.1) WILD-TYPE     54     38     74
D38V10, multiclass
        clus
vv       DEL PEAK 10(3P12.1) MUTATED DEL PEAK 10(3P12.1) WILD-TYPE
  CLUS_1                         117                            54
  CLUS_2                          66                            38
  CLUS_3                         124                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 11(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P16.3) MUTATED       95     84     10     16
  DEL PEAK 11(4P16.3) WILD-TYPE    108     44    135     30
D39V1, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          95                           108
  CLUS_2                          84                            44
  CLUS_3                          10                           135
  CLUS_4                          16                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4P16.3) MUTATED       20     47     26     61     20     26
  DEL PEAK 11(4P16.3) WILD-TYPE     64     40     77     28     58     49
                               vv
clus                            CLUS_7
  DEL PEAK 11(4P16.3) MUTATED        5
  DEL PEAK 11(4P16.3) WILD-TYPE      1
D39V2, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          20                            64
  CLUS_2                          47                            40
  CLUS_3                          26                            77
  CLUS_4                          61                            28
  CLUS_5                          20                            58
  CLUS_6                          26                            49
  CLUS_7                           5                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4P16.3) MUTATED       25     13     18     10     24
  DEL PEAK 11(4P16.3) WILD-TYPE     25     16     13     19     43
D39V3, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          25                            25
  CLUS_2                          13                            16
  CLUS_3                          18                            13
  CLUS_4                          10                            19
  CLUS_5                          24                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P16.3) MUTATED       36     37     17
  DEL PEAK 11(4P16.3) WILD-TYPE     40     45     31
D39V4, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          36                            40
  CLUS_2                          37                            45
  CLUS_3                          17                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P16.3) MUTATED       61     30     79     32
  DEL PEAK 11(4P16.3) WILD-TYPE     74     83     92     63
D39V5, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          61                            74
  CLUS_2                          30                            83
  CLUS_3                          79                            92
  CLUS_4                          32                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P16.3) MUTATED       72     63     51     16
  DEL PEAK 11(4P16.3) WILD-TYPE    104     40    119     49
D39V6, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          72                           104
  CLUS_2                          63                            40
  CLUS_3                          51                           119
  CLUS_4                          16                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4P16.3) MUTATED       40     43     57     33     30
  DEL PEAK 11(4P16.3) WILD-TYPE     41     96     74     58     46
D39V7, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          40                            41
  CLUS_2                          43                            96
  CLUS_3                          57                            74
  CLUS_4                          33                            58
  CLUS_5                          30                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P16.3) MUTATED       74     66     63
  DEL PEAK 11(4P16.3) WILD-TYPE    116     76    123
D39V8, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          74                           116
  CLUS_2                          66                            76
  CLUS_3                          63                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P16.3) MUTATED       60     57     65
  DEL PEAK 11(4P16.3) WILD-TYPE     81    132     78
D39V9, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          60                            81
  CLUS_2                          57                           132
  CLUS_3                          65                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P16.3) MUTATED       71     29     82
  DEL PEAK 11(4P16.3) WILD-TYPE    100     75    116
D39V10, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          71                           100
  CLUS_2                          29                            75
  CLUS_3                          82                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 12(4P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4P15.2) MUTATED       95     86     10     17
  DEL PEAK 12(4P15.2) WILD-TYPE    108     42    135     29
D40V1, multiclass
        clus
vv       DEL PEAK 12(4P15.2) MUTATED DEL PEAK 12(4P15.2) WILD-TYPE
  CLUS_1                          95                           108
  CLUS_2                          86                            42
  CLUS_3                          10                           135
  CLUS_4                          17                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(4P15.2) MUTATED       22     47     25     65     21     23
  DEL PEAK 12(4P15.2) WILD-TYPE     62     40     78     24     57     52
                               vv
clus                            CLUS_7
  DEL PEAK 12(4P15.2) MUTATED        5
  DEL PEAK 12(4P15.2) WILD-TYPE      1
D40V2, multiclass
        clus
vv       DEL PEAK 12(4P15.2) MUTATED DEL PEAK 12(4P15.2) WILD-TYPE
  CLUS_1                          22                            62
  CLUS_2                          47                            40
  CLUS_3                          25                            78
  CLUS_4                          65                            24
  CLUS_5                          21                            57
  CLUS_6                          23                            52
  CLUS_7                           5                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4P15.2) MUTATED       26     13     20      9     23
  DEL PEAK 12(4P15.2) WILD-TYPE     24     16     11     20     44
D40V3, multiclass
        clus
vv       DEL PEAK 12(4P15.2) MUTATED DEL PEAK 12(4P15.2) WILD-TYPE
  CLUS_1                          26                            24
  CLUS_2                          13                            16
  CLUS_3                          20                            11
  CLUS_4                           9                            20
  CLUS_5                          23                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4P15.2) MUTATED       34     40     17
  DEL PEAK 12(4P15.2) WILD-TYPE     42     42     31
D40V4, multiclass
        clus
vv       DEL PEAK 12(4P15.2) MUTATED DEL PEAK 12(4P15.2) WILD-TYPE
  CLUS_1                          34                            42
  CLUS_2                          40                            42
  CLUS_3                          17                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4P15.2) MUTATED       58     30     80     37
  DEL PEAK 12(4P15.2) WILD-TYPE     77     83     91     58
D40V5, multiclass
        clus
vv       DEL PEAK 12(4P15.2) MUTATED DEL PEAK 12(4P15.2) WILD-TYPE
  CLUS_1                          58                            77
  CLUS_2                          30                            83
  CLUS_3                          80                            91
  CLUS_4                          37                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4P15.2) MUTATED       74     64     49     18
  DEL PEAK 12(4P15.2) WILD-TYPE    102     39    121     47
D40V6, multiclass
        clus
vv       DEL PEAK 12(4P15.2) MUTATED DEL PEAK 12(4P15.2) WILD-TYPE
  CLUS_1                          74                           102
  CLUS_2                          64                            39
  CLUS_3                          49                           121
  CLUS_4                          18                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4P15.2) MUTATED       43     41     57     32     33
  DEL PEAK 12(4P15.2) WILD-TYPE     38     98     74     59     43
D40V7, multiclass
        clus
vv       DEL PEAK 12(4P15.2) MUTATED DEL PEAK 12(4P15.2) WILD-TYPE
  CLUS_1                          43                            38
  CLUS_2                          41                            98
  CLUS_3                          57                            74
  CLUS_4                          32                            59
  CLUS_5                          33                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4P15.2) MUTATED       76     68     62
  DEL PEAK 12(4P15.2) WILD-TYPE    114     74    124
D40V8, multiclass
        clus
vv       DEL PEAK 12(4P15.2) MUTATED DEL PEAK 12(4P15.2) WILD-TYPE
  CLUS_1                          76                           114
  CLUS_2                          68                            74
  CLUS_3                          62                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4P15.2) MUTATED       64     55     66
  DEL PEAK 12(4P15.2) WILD-TYPE     77    134     77
D40V9, multiclass
        clus
vv       DEL PEAK 12(4P15.2) MUTATED DEL PEAK 12(4P15.2) WILD-TYPE
  CLUS_1                          64                            77
  CLUS_2                          55                           134
  CLUS_3                          66                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4P15.2) MUTATED       76     26     83
  DEL PEAK 12(4P15.2) WILD-TYPE     95     78    115
D40V10, multiclass
        clus
vv       DEL PEAK 12(4P15.2) MUTATED DEL PEAK 12(4P15.2) WILD-TYPE
  CLUS_1                          76                            95
  CLUS_2                          26                            78
  CLUS_3                          83                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 13(4Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q21.3) MUTATED       67     61     12     16
  DEL PEAK 13(4Q21.3) WILD-TYPE    136     67    133     30
D41V1, multiclass
        clus
vv       DEL PEAK 13(4Q21.3) MUTATED DEL PEAK 13(4Q21.3) WILD-TYPE
  CLUS_1                          67                           136
  CLUS_2                          61                            67
  CLUS_3                          12                           133
  CLUS_4                          16                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(4Q21.3) MUTATED       15     32     19     48     17     23
  DEL PEAK 13(4Q21.3) WILD-TYPE     69     55     84     41     61     52
                               vv
clus                            CLUS_7
  DEL PEAK 13(4Q21.3) MUTATED        2
  DEL PEAK 13(4Q21.3) WILD-TYPE      4
D41V2, multiclass
        clus
vv       DEL PEAK 13(4Q21.3) MUTATED DEL PEAK 13(4Q21.3) WILD-TYPE
  CLUS_1                          15                            69
  CLUS_2                          32                            55
  CLUS_3                          19                            84
  CLUS_4                          48                            41
  CLUS_5                          17                            61
  CLUS_6                          23                            52
  CLUS_7                           2                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4Q21.3) MUTATED       14     10     12      7     19
  DEL PEAK 13(4Q21.3) WILD-TYPE     36     19     19     22     48
D41V3, multiclass
        clus
vv       DEL PEAK 13(4Q21.3) MUTATED DEL PEAK 13(4Q21.3) WILD-TYPE
  CLUS_1                          14                            36
  CLUS_2                          10                            19
  CLUS_3                          12                            19
  CLUS_4                           7                            22
  CLUS_5                          19                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q21.3) MUTATED       21     32      9
  DEL PEAK 13(4Q21.3) WILD-TYPE     55     50     39
D41V4, multiclass
        clus
vv       DEL PEAK 13(4Q21.3) MUTATED DEL PEAK 13(4Q21.3) WILD-TYPE
  CLUS_1                          21                            55
  CLUS_2                          32                            50
  CLUS_3                           9                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q21.3) MUTATED       38     25     59     30
  DEL PEAK 13(4Q21.3) WILD-TYPE     97     88    112     65
D41V5, multiclass
        clus
vv       DEL PEAK 13(4Q21.3) MUTATED DEL PEAK 13(4Q21.3) WILD-TYPE
  CLUS_1                          38                            97
  CLUS_2                          25                            88
  CLUS_3                          59                           112
  CLUS_4                          30                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q21.3) MUTATED       63     44     30     15
  DEL PEAK 13(4Q21.3) WILD-TYPE    113     59    140     50
D41V6, multiclass
        clus
vv       DEL PEAK 13(4Q21.3) MUTATED DEL PEAK 13(4Q21.3) WILD-TYPE
  CLUS_1                          63                           113
  CLUS_2                          44                            59
  CLUS_3                          30                           140
  CLUS_4                          15                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4Q21.3) MUTATED       29     36     44     21     23
  DEL PEAK 13(4Q21.3) WILD-TYPE     52    103     87     70     53
D41V7, multiclass
        clus
vv       DEL PEAK 13(4Q21.3) MUTATED DEL PEAK 13(4Q21.3) WILD-TYPE
  CLUS_1                          29                            52
  CLUS_2                          36                           103
  CLUS_3                          44                            87
  CLUS_4                          21                            70
  CLUS_5                          23                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q21.3) MUTATED       63     48     42
  DEL PEAK 13(4Q21.3) WILD-TYPE    127     94    144
D41V8, multiclass
        clus
vv       DEL PEAK 13(4Q21.3) MUTATED DEL PEAK 13(4Q21.3) WILD-TYPE
  CLUS_1                          63                           127
  CLUS_2                          48                            94
  CLUS_3                          42                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q21.3) MUTATED       48     52     44
  DEL PEAK 13(4Q21.3) WILD-TYPE     93    137     99
D41V9, multiclass
        clus
vv       DEL PEAK 13(4Q21.3) MUTATED DEL PEAK 13(4Q21.3) WILD-TYPE
  CLUS_1                          48                            93
  CLUS_2                          52                           137
  CLUS_3                          44                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q21.3) MUTATED       59     21     64
  DEL PEAK 13(4Q21.3) WILD-TYPE    112     83    134
D41V10, multiclass
        clus
vv       DEL PEAK 13(4Q21.3) MUTATED DEL PEAK 13(4Q21.3) WILD-TYPE
  CLUS_1                          59                           112
  CLUS_2                          21                            83
  CLUS_3                          64                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 14(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q22.1) MUTATED       75     66     11     17
  DEL PEAK 14(4Q22.1) WILD-TYPE    128     62    134     29
D42V1, multiclass
        clus
vv       DEL PEAK 14(4Q22.1) MUTATED DEL PEAK 14(4Q22.1) WILD-TYPE
  CLUS_1                          75                           128
  CLUS_2                          66                            62
  CLUS_3                          11                           134
  CLUS_4                          17                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(4Q22.1) MUTATED       12     34     22     58     18     23
  DEL PEAK 14(4Q22.1) WILD-TYPE     72     53     81     31     60     52
                               vv
clus                            CLUS_7
  DEL PEAK 14(4Q22.1) MUTATED        2
  DEL PEAK 14(4Q22.1) WILD-TYPE      4
D42V2, multiclass
        clus
vv       DEL PEAK 14(4Q22.1) MUTATED DEL PEAK 14(4Q22.1) WILD-TYPE
  CLUS_1                          12                            72
  CLUS_2                          34                            53
  CLUS_3                          22                            81
  CLUS_4                          58                            31
  CLUS_5                          18                            60
  CLUS_6                          23                            52
  CLUS_7                           2                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(4Q22.1) MUTATED       16     11     15     10     20
  DEL PEAK 14(4Q22.1) WILD-TYPE     34     18     16     19     47
D42V3, multiclass
        clus
vv       DEL PEAK 14(4Q22.1) MUTATED DEL PEAK 14(4Q22.1) WILD-TYPE
  CLUS_1                          16                            34
  CLUS_2                          11                            18
  CLUS_3                          15                            16
  CLUS_4                          10                            19
  CLUS_5                          20                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q22.1) MUTATED       26     35     11
  DEL PEAK 14(4Q22.1) WILD-TYPE     50     47     37
D42V4, multiclass
        clus
vv       DEL PEAK 14(4Q22.1) MUTATED DEL PEAK 14(4Q22.1) WILD-TYPE
  CLUS_1                          26                            50
  CLUS_2                          35                            47
  CLUS_3                          11                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q22.1) MUTATED       45     27     64     30
  DEL PEAK 14(4Q22.1) WILD-TYPE     90     86    107     65
D42V5, multiclass
        clus
vv       DEL PEAK 14(4Q22.1) MUTATED DEL PEAK 14(4Q22.1) WILD-TYPE
  CLUS_1                          45                            90
  CLUS_2                          27                            86
  CLUS_3                          64                           107
  CLUS_4                          30                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q22.1) MUTATED       63     48     40     15
  DEL PEAK 14(4Q22.1) WILD-TYPE    113     55    130     50
D42V6, multiclass
        clus
vv       DEL PEAK 14(4Q22.1) MUTATED DEL PEAK 14(4Q22.1) WILD-TYPE
  CLUS_1                          63                           113
  CLUS_2                          48                            55
  CLUS_3                          40                           130
  CLUS_4                          15                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(4Q22.1) MUTATED       30     39     47     25     25
  DEL PEAK 14(4Q22.1) WILD-TYPE     51    100     84     66     51
D42V7, multiclass
        clus
vv       DEL PEAK 14(4Q22.1) MUTATED DEL PEAK 14(4Q22.1) WILD-TYPE
  CLUS_1                          30                            51
  CLUS_2                          39                           100
  CLUS_3                          47                            84
  CLUS_4                          25                            66
  CLUS_5                          25                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q22.1) MUTATED       66     53     47
  DEL PEAK 14(4Q22.1) WILD-TYPE    124     89    139
D42V8, multiclass
        clus
vv       DEL PEAK 14(4Q22.1) MUTATED DEL PEAK 14(4Q22.1) WILD-TYPE
  CLUS_1                          66                           124
  CLUS_2                          53                            89
  CLUS_3                          47                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q22.1) MUTATED       50     56     50
  DEL PEAK 14(4Q22.1) WILD-TYPE     91    133     93
D42V9, multiclass
        clus
vv       DEL PEAK 14(4Q22.1) MUTATED DEL PEAK 14(4Q22.1) WILD-TYPE
  CLUS_1                          50                            91
  CLUS_2                          56                           133
  CLUS_3                          50                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q22.1) MUTATED       60     25     71
  DEL PEAK 14(4Q22.1) WILD-TYPE    111     79    127
D42V10, multiclass
        clus
vv       DEL PEAK 14(4Q22.1) MUTATED DEL PEAK 14(4Q22.1) WILD-TYPE
  CLUS_1                          60                           111
  CLUS_2                          25                            79
  CLUS_3                          71                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 15(4Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(4Q35.2) MUTATED      102     70     16     25
  DEL PEAK 15(4Q35.2) WILD-TYPE    101     58    129     21
D43V1, multiclass
        clus
vv       DEL PEAK 15(4Q35.2) MUTATED DEL PEAK 15(4Q35.2) WILD-TYPE
  CLUS_1                         102                           101
  CLUS_2                          70                            58
  CLUS_3                          16                           129
  CLUS_4                          25                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(4Q35.2) MUTATED       24     43     34     55     20     35
  DEL PEAK 15(4Q35.2) WILD-TYPE     60     44     69     34     58     40
                               vv
clus                            CLUS_7
  DEL PEAK 15(4Q35.2) MUTATED        2
  DEL PEAK 15(4Q35.2) WILD-TYPE      4
D43V2, multiclass
        clus
vv       DEL PEAK 15(4Q35.2) MUTATED DEL PEAK 15(4Q35.2) WILD-TYPE
  CLUS_1                          24                            60
  CLUS_2                          43                            44
  CLUS_3                          34                            69
  CLUS_4                          55                            34
  CLUS_5                          20                            58
  CLUS_6                          35                            40
  CLUS_7                           2                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(4Q35.2) MUTATED       21     11     16     13     30
  DEL PEAK 15(4Q35.2) WILD-TYPE     29     18     15     16     37
D43V3, multiclass
        clus
vv       DEL PEAK 15(4Q35.2) MUTATED DEL PEAK 15(4Q35.2) WILD-TYPE
  CLUS_1                          21                            29
  CLUS_2                          11                            18
  CLUS_3                          16                            15
  CLUS_4                          13                            16
  CLUS_5                          30                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(4Q35.2) MUTATED       34     41     16
  DEL PEAK 15(4Q35.2) WILD-TYPE     42     41     32
D43V4, multiclass
        clus
vv       DEL PEAK 15(4Q35.2) MUTATED DEL PEAK 15(4Q35.2) WILD-TYPE
  CLUS_1                          34                            42
  CLUS_2                          41                            41
  CLUS_3                          16                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(4Q35.2) MUTATED       57     34     76     41
  DEL PEAK 15(4Q35.2) WILD-TYPE     78     79     95     54
D43V5, multiclass
        clus
vv       DEL PEAK 15(4Q35.2) MUTATED DEL PEAK 15(4Q35.2) WILD-TYPE
  CLUS_1                          57                            78
  CLUS_2                          34                            79
  CLUS_3                          76                            95
  CLUS_4                          41                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(4Q35.2) MUTATED       79     55     59     15
  DEL PEAK 15(4Q35.2) WILD-TYPE     97     48    111     50
D43V6, multiclass
        clus
vv       DEL PEAK 15(4Q35.2) MUTATED DEL PEAK 15(4Q35.2) WILD-TYPE
  CLUS_1                          79                            97
  CLUS_2                          55                            48
  CLUS_3                          59                           111
  CLUS_4                          15                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(4Q35.2) MUTATED       41     48     53     37     32
  DEL PEAK 15(4Q35.2) WILD-TYPE     40     91     78     54     44
D43V7, multiclass
        clus
vv       DEL PEAK 15(4Q35.2) MUTATED DEL PEAK 15(4Q35.2) WILD-TYPE
  CLUS_1                          41                            40
  CLUS_2                          48                            91
  CLUS_3                          53                            78
  CLUS_4                          37                            54
  CLUS_5                          32                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(4Q35.2) MUTATED       84     68     59
  DEL PEAK 15(4Q35.2) WILD-TYPE    106     74    127
D43V8, multiclass
        clus
vv       DEL PEAK 15(4Q35.2) MUTATED DEL PEAK 15(4Q35.2) WILD-TYPE
  CLUS_1                          84                           106
  CLUS_2                          68                            74
  CLUS_3                          59                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(4Q35.2) MUTATED       68     74     54
  DEL PEAK 15(4Q35.2) WILD-TYPE     73    115     89
D43V9, multiclass
        clus
vv       DEL PEAK 15(4Q35.2) MUTATED DEL PEAK 15(4Q35.2) WILD-TYPE
  CLUS_1                          68                            73
  CLUS_2                          74                           115
  CLUS_3                          54                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(4Q35.2) MUTATED       80     37     79
  DEL PEAK 15(4Q35.2) WILD-TYPE     91     67    119
D43V10, multiclass
        clus
vv       DEL PEAK 15(4Q35.2) MUTATED DEL PEAK 15(4Q35.2) WILD-TYPE
  CLUS_1                          80                            91
  CLUS_2                          37                            67
  CLUS_3                          79                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 16(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(5Q12.1) MUTATED      112     86      8      9
  DEL PEAK 16(5Q12.1) WILD-TYPE     91     42    137     37
D44V1, multiclass
        clus
vv       DEL PEAK 16(5Q12.1) MUTATED DEL PEAK 16(5Q12.1) WILD-TYPE
  CLUS_1                         112                            91
  CLUS_2                          86                            42
  CLUS_3                           8                           137
  CLUS_4                           9                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(5Q12.1) MUTATED       16     56     22     62     10     46
  DEL PEAK 16(5Q12.1) WILD-TYPE     68     31     81     27     68     29
                               vv
clus                            CLUS_7
  DEL PEAK 16(5Q12.1) MUTATED        3
  DEL PEAK 16(5Q12.1) WILD-TYPE      3
D44V2, multiclass
        clus
vv       DEL PEAK 16(5Q12.1) MUTATED DEL PEAK 16(5Q12.1) WILD-TYPE
  CLUS_1                          16                            68
  CLUS_2                          56                            31
  CLUS_3                          22                            81
  CLUS_4                          62                            27
  CLUS_5                          10                            68
  CLUS_6                          46                            29
  CLUS_7                           3                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(5Q12.1) MUTATED       19      7     22     12     33
  DEL PEAK 16(5Q12.1) WILD-TYPE     31     22      9     17     34
D44V3, multiclass
        clus
vv       DEL PEAK 16(5Q12.1) MUTATED DEL PEAK 16(5Q12.1) WILD-TYPE
  CLUS_1                          19                            31
  CLUS_2                           7                            22
  CLUS_3                          22                             9
  CLUS_4                          12                            17
  CLUS_5                          33                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(5Q12.1) MUTATED       32     42     19
  DEL PEAK 16(5Q12.1) WILD-TYPE     44     40     29
D44V4, multiclass
        clus
vv       DEL PEAK 16(5Q12.1) MUTATED DEL PEAK 16(5Q12.1) WILD-TYPE
  CLUS_1                          32                            44
  CLUS_2                          42                            40
  CLUS_3                          19                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(5Q12.1) MUTATED       58     35     76     44
  DEL PEAK 16(5Q12.1) WILD-TYPE     77     78     95     51
D44V5, multiclass
        clus
vv       DEL PEAK 16(5Q12.1) MUTATED DEL PEAK 16(5Q12.1) WILD-TYPE
  CLUS_1                          58                            77
  CLUS_2                          35                            78
  CLUS_3                          76                            95
  CLUS_4                          44                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(5Q12.1) MUTATED       81     70     48     14
  DEL PEAK 16(5Q12.1) WILD-TYPE     95     33    122     51
D44V6, multiclass
        clus
vv       DEL PEAK 16(5Q12.1) MUTATED DEL PEAK 16(5Q12.1) WILD-TYPE
  CLUS_1                          81                            95
  CLUS_2                          70                            33
  CLUS_3                          48                           122
  CLUS_4                          14                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(5Q12.1) MUTATED       49     52     44     36     31
  DEL PEAK 16(5Q12.1) WILD-TYPE     32     87     87     55     45
D44V7, multiclass
        clus
vv       DEL PEAK 16(5Q12.1) MUTATED DEL PEAK 16(5Q12.1) WILD-TYPE
  CLUS_1                          49                            32
  CLUS_2                          52                            87
  CLUS_3                          44                            87
  CLUS_4                          36                            55
  CLUS_5                          31                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(5Q12.1) MUTATED       84     75     53
  DEL PEAK 16(5Q12.1) WILD-TYPE    106     67    133
D44V8, multiclass
        clus
vv       DEL PEAK 16(5Q12.1) MUTATED DEL PEAK 16(5Q12.1) WILD-TYPE
  CLUS_1                          84                           106
  CLUS_2                          75                            67
  CLUS_3                          53                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(5Q12.1) MUTATED       65     72     59
  DEL PEAK 16(5Q12.1) WILD-TYPE     76    117     84
D44V9, multiclass
        clus
vv       DEL PEAK 16(5Q12.1) MUTATED DEL PEAK 16(5Q12.1) WILD-TYPE
  CLUS_1                          65                            76
  CLUS_2                          72                           117
  CLUS_3                          59                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(5Q12.1) MUTATED       75     45     76
  DEL PEAK 16(5Q12.1) WILD-TYPE     96     59    122
D44V10, multiclass
        clus
vv       DEL PEAK 16(5Q12.1) MUTATED DEL PEAK 16(5Q12.1) WILD-TYPE
  CLUS_1                          75                            96
  CLUS_2                          45                            59
  CLUS_3                          76                           122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 17(5Q15) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(5Q15) MUTATED      114     89     13     10
  DEL PEAK 17(5Q15) WILD-TYPE     89     39    132     36
D45V1, multiclass
        clus
vv       DEL PEAK 17(5Q15) MUTATED DEL PEAK 17(5Q15) WILD-TYPE
  CLUS_1                       114                          89
  CLUS_2                        89                          39
  CLUS_3                        13                         132
  CLUS_4                        10                          36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 17(5Q15) MUTATED       17     59     24     64     12     46      4
  DEL PEAK 17(5Q15) WILD-TYPE     67     28     79     25     66     29      2
D45V2, multiclass
        clus
vv       DEL PEAK 17(5Q15) MUTATED DEL PEAK 17(5Q15) WILD-TYPE
  CLUS_1                        17                          67
  CLUS_2                        59                          28
  CLUS_3                        24                          79
  CLUS_4                        64                          25
  CLUS_5                        12                          66
  CLUS_6                        46                          29
  CLUS_7                         4                           2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(5Q15) MUTATED       19      9     22     12     30
  DEL PEAK 17(5Q15) WILD-TYPE     31     20      9     17     37
D45V3, multiclass
        clus
vv       DEL PEAK 17(5Q15) MUTATED DEL PEAK 17(5Q15) WILD-TYPE
  CLUS_1                        19                          31
  CLUS_2                         9                          20
  CLUS_3                        22                           9
  CLUS_4                        12                          17
  CLUS_5                        30                          37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(5Q15) MUTATED       32     41     19
  DEL PEAK 17(5Q15) WILD-TYPE     44     41     29
D45V4, multiclass
        clus
vv       DEL PEAK 17(5Q15) MUTATED DEL PEAK 17(5Q15) WILD-TYPE
  CLUS_1                        32                          44
  CLUS_2                        41                          41
  CLUS_3                        19                          29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(5Q15) MUTATED       58     41     81     43
  DEL PEAK 17(5Q15) WILD-TYPE     77     72     90     52
D45V5, multiclass
        clus
vv       DEL PEAK 17(5Q15) MUTATED DEL PEAK 17(5Q15) WILD-TYPE
  CLUS_1                        58                          77
  CLUS_2                        41                          72
  CLUS_3                        81                          90
  CLUS_4                        43                          52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(5Q15) MUTATED       82     71     54     16
  DEL PEAK 17(5Q15) WILD-TYPE     94     32    116     49
D45V6, multiclass
        clus
vv       DEL PEAK 17(5Q15) MUTATED DEL PEAK 17(5Q15) WILD-TYPE
  CLUS_1                        82                          94
  CLUS_2                        71                          32
  CLUS_3                        54                         116
  CLUS_4                        16                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(5Q15) MUTATED       49     56     49     40     29
  DEL PEAK 17(5Q15) WILD-TYPE     32     83     82     51     47
D45V7, multiclass
        clus
vv       DEL PEAK 17(5Q15) MUTATED DEL PEAK 17(5Q15) WILD-TYPE
  CLUS_1                        49                          32
  CLUS_2                        56                          83
  CLUS_3                        49                          82
  CLUS_4                        40                          51
  CLUS_5                        29                          47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(5Q15) MUTATED       86     80     57
  DEL PEAK 17(5Q15) WILD-TYPE    104     62    129
D45V8, multiclass
        clus
vv       DEL PEAK 17(5Q15) MUTATED DEL PEAK 17(5Q15) WILD-TYPE
  CLUS_1                        86                         104
  CLUS_2                        80                          62
  CLUS_3                        57                         129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(5Q15) MUTATED       64     77     64
  DEL PEAK 17(5Q15) WILD-TYPE     77    112     79
D45V9, multiclass
        clus
vv       DEL PEAK 17(5Q15) MUTATED DEL PEAK 17(5Q15) WILD-TYPE
  CLUS_1                        64                          77
  CLUS_2                        77                         112
  CLUS_3                        64                          79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(5Q15) MUTATED       74     48     83
  DEL PEAK 17(5Q15) WILD-TYPE     97     56    115
D45V10, multiclass
        clus
vv       DEL PEAK 17(5Q15) MUTATED DEL PEAK 17(5Q15) WILD-TYPE
  CLUS_1                        74                          97
  CLUS_2                        48                          56
  CLUS_3                        83                         115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 18(5Q35.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(5Q35.3) MUTATED       94     87      7     11
  DEL PEAK 18(5Q35.3) WILD-TYPE    109     41    138     35
D46V1, multiclass
        clus
vv       DEL PEAK 18(5Q35.3) MUTATED DEL PEAK 18(5Q35.3) WILD-TYPE
  CLUS_1                          94                           109
  CLUS_2                          87                            41
  CLUS_3                           7                           138
  CLUS_4                          11                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(5Q35.3) MUTATED       17     63     15     49     11     39
  DEL PEAK 18(5Q35.3) WILD-TYPE     67     24     88     40     67     36
                               vv
clus                            CLUS_7
  DEL PEAK 18(5Q35.3) MUTATED        5
  DEL PEAK 18(5Q35.3) WILD-TYPE      1
D46V2, multiclass
        clus
vv       DEL PEAK 18(5Q35.3) MUTATED DEL PEAK 18(5Q35.3) WILD-TYPE
  CLUS_1                          17                            67
  CLUS_2                          63                            24
  CLUS_3                          15                            88
  CLUS_4                          49                            40
  CLUS_5                          11                            67
  CLUS_6                          39                            36
  CLUS_7                           5                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(5Q35.3) MUTATED       18      9     19     10     27
  DEL PEAK 18(5Q35.3) WILD-TYPE     32     20     12     19     40
D46V3, multiclass
        clus
vv       DEL PEAK 18(5Q35.3) MUTATED DEL PEAK 18(5Q35.3) WILD-TYPE
  CLUS_1                          18                            32
  CLUS_2                           9                            20
  CLUS_3                          19                            12
  CLUS_4                          10                            19
  CLUS_5                          27                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(5Q35.3) MUTATED       28     34     21
  DEL PEAK 18(5Q35.3) WILD-TYPE     48     48     27
D46V4, multiclass
        clus
vv       DEL PEAK 18(5Q35.3) MUTATED DEL PEAK 18(5Q35.3) WILD-TYPE
  CLUS_1                          28                            48
  CLUS_2                          34                            48
  CLUS_3                          21                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(5Q35.3) MUTATED       48     31     81     38
  DEL PEAK 18(5Q35.3) WILD-TYPE     87     82     90     57
D46V5, multiclass
        clus
vv       DEL PEAK 18(5Q35.3) MUTATED DEL PEAK 18(5Q35.3) WILD-TYPE
  CLUS_1                          48                            87
  CLUS_2                          31                            82
  CLUS_3                          81                            90
  CLUS_4                          38                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(5Q35.3) MUTATED       76     69     39     14
  DEL PEAK 18(5Q35.3) WILD-TYPE    100     34    131     51
D46V6, multiclass
        clus
vv       DEL PEAK 18(5Q35.3) MUTATED DEL PEAK 18(5Q35.3) WILD-TYPE
  CLUS_1                          76                           100
  CLUS_2                          69                            34
  CLUS_3                          39                           131
  CLUS_4                          14                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(5Q35.3) MUTATED       43     51     42     31     29
  DEL PEAK 18(5Q35.3) WILD-TYPE     38     88     89     60     47
D46V7, multiclass
        clus
vv       DEL PEAK 18(5Q35.3) MUTATED DEL PEAK 18(5Q35.3) WILD-TYPE
  CLUS_1                          43                            38
  CLUS_2                          51                            88
  CLUS_3                          42                            89
  CLUS_4                          31                            60
  CLUS_5                          29                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(5Q35.3) MUTATED       79     70     47
  DEL PEAK 18(5Q35.3) WILD-TYPE    111     72    139
D46V8, multiclass
        clus
vv       DEL PEAK 18(5Q35.3) MUTATED DEL PEAK 18(5Q35.3) WILD-TYPE
  CLUS_1                          79                           111
  CLUS_2                          70                            72
  CLUS_3                          47                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(5Q35.3) MUTATED       59     72     48
  DEL PEAK 18(5Q35.3) WILD-TYPE     82    117     95
D46V9, multiclass
        clus
vv       DEL PEAK 18(5Q35.3) MUTATED DEL PEAK 18(5Q35.3) WILD-TYPE
  CLUS_1                          59                            82
  CLUS_2                          72                           117
  CLUS_3                          48                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(5Q35.3) MUTATED       71     42     66
  DEL PEAK 18(5Q35.3) WILD-TYPE    100     62    132
D46V10, multiclass
        clus
vv       DEL PEAK 18(5Q35.3) MUTATED DEL PEAK 18(5Q35.3) WILD-TYPE
  CLUS_1                          71                           100
  CLUS_2                          42                            62
  CLUS_3                          66                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 19(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(6P25.3) MUTATED       41     32     14      9
  DEL PEAK 19(6P25.3) WILD-TYPE    162     96    131     37
D47V1, multiclass
        clus
vv       DEL PEAK 19(6P25.3) MUTATED DEL PEAK 19(6P25.3) WILD-TYPE
  CLUS_1                          41                           162
  CLUS_2                          32                            96
  CLUS_3                          14                           131
  CLUS_4                           9                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(6P25.3) MUTATED       11     13      9     37     11     13
  DEL PEAK 19(6P25.3) WILD-TYPE     73     74     94     52     67     62
                               vv
clus                            CLUS_7
  DEL PEAK 19(6P25.3) MUTATED        2
  DEL PEAK 19(6P25.3) WILD-TYPE      4
D47V2, multiclass
        clus
vv       DEL PEAK 19(6P25.3) MUTATED DEL PEAK 19(6P25.3) WILD-TYPE
  CLUS_1                          11                            73
  CLUS_2                          13                            74
  CLUS_3                           9                            94
  CLUS_4                          37                            52
  CLUS_5                          11                            67
  CLUS_6                          13                            62
  CLUS_7                           2                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(6P25.3) MUTATED       12      6      7      2     17
  DEL PEAK 19(6P25.3) WILD-TYPE     38     23     24     27     50
D47V3, multiclass
        clus
vv       DEL PEAK 19(6P25.3) MUTATED DEL PEAK 19(6P25.3) WILD-TYPE
  CLUS_1                          12                            38
  CLUS_2                           6                            23
  CLUS_3                           7                            24
  CLUS_4                           2                            27
  CLUS_5                          17                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6P25.3) MUTATED       15     25      4
  DEL PEAK 19(6P25.3) WILD-TYPE     61     57     44
D47V4, multiclass
        clus
vv       DEL PEAK 19(6P25.3) MUTATED DEL PEAK 19(6P25.3) WILD-TYPE
  CLUS_1                          15                            61
  CLUS_2                          25                            57
  CLUS_3                           4                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(6P25.3) MUTATED       29      9     32     24
  DEL PEAK 19(6P25.3) WILD-TYPE    106    104    139     71
D47V5, multiclass
        clus
vv       DEL PEAK 19(6P25.3) MUTATED DEL PEAK 19(6P25.3) WILD-TYPE
  CLUS_1                          29                           106
  CLUS_2                           9                           104
  CLUS_3                          32                           139
  CLUS_4                          24                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(6P25.3) MUTATED       33     26     26      9
  DEL PEAK 19(6P25.3) WILD-TYPE    143     77    144     56
D47V6, multiclass
        clus
vv       DEL PEAK 19(6P25.3) MUTATED DEL PEAK 19(6P25.3) WILD-TYPE
  CLUS_1                          33                           143
  CLUS_2                          26                            77
  CLUS_3                          26                           144
  CLUS_4                           9                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(6P25.3) MUTATED       13     18     32     13     20
  DEL PEAK 19(6P25.3) WILD-TYPE     68    121     99     78     56
D47V7, multiclass
        clus
vv       DEL PEAK 19(6P25.3) MUTATED DEL PEAK 19(6P25.3) WILD-TYPE
  CLUS_1                          13                            68
  CLUS_2                          18                           121
  CLUS_3                          32                            99
  CLUS_4                          13                            78
  CLUS_5                          20                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6P25.3) MUTATED       37     28     31
  DEL PEAK 19(6P25.3) WILD-TYPE    153    114    155
D47V8, multiclass
        clus
vv       DEL PEAK 19(6P25.3) MUTATED DEL PEAK 19(6P25.3) WILD-TYPE
  CLUS_1                          37                           153
  CLUS_2                          28                           114
  CLUS_3                          31                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6P25.3) MUTATED       23     33     29
  DEL PEAK 19(6P25.3) WILD-TYPE    118    156    114
D47V9, multiclass
        clus
vv       DEL PEAK 19(6P25.3) MUTATED DEL PEAK 19(6P25.3) WILD-TYPE
  CLUS_1                          23                           118
  CLUS_2                          33                           156
  CLUS_3                          29                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6P25.3) MUTATED       30     16     39
  DEL PEAK 19(6P25.3) WILD-TYPE    141     88    159
D47V10, multiclass
        clus
vv       DEL PEAK 19(6P25.3) MUTATED DEL PEAK 19(6P25.3) WILD-TYPE
  CLUS_1                          30                           141
  CLUS_2                          16                            88
  CLUS_3                          39                           159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 20(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q31.1) MUTATED       42     17      8     10
  DEL PEAK 20(7Q31.1) WILD-TYPE    161    111    137     36
D48V1, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          42                           161
  CLUS_2                          17                           111
  CLUS_3                           8                           137
  CLUS_4                          10                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(7Q31.1) MUTATED       12     17      9     16     10     13
  DEL PEAK 20(7Q31.1) WILD-TYPE     72     70     94     73     68     62
                               vv
clus                            CLUS_7
  DEL PEAK 20(7Q31.1) MUTATED        0
  DEL PEAK 20(7Q31.1) WILD-TYPE      6
D48V2, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          12                            72
  CLUS_2                          17                            70
  CLUS_3                           9                            94
  CLUS_4                          16                            73
  CLUS_5                          10                            68
  CLUS_6                          13                            62
  CLUS_7                           0                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(7Q31.1) MUTATED       11      6      5      4      9
  DEL PEAK 20(7Q31.1) WILD-TYPE     39     23     26     25     58
D48V3, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          11                            39
  CLUS_2                           6                            23
  CLUS_3                           5                            26
  CLUS_4                           4                            25
  CLUS_5                           9                            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q31.1) MUTATED       13     11     11
  DEL PEAK 20(7Q31.1) WILD-TYPE     63     71     37
D48V4, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          13                            63
  CLUS_2                          11                            71
  CLUS_3                          11                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q31.1) MUTATED       33     17     17     10
  DEL PEAK 20(7Q31.1) WILD-TYPE    102     96    154     85
D48V5, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          33                           102
  CLUS_2                          17                            96
  CLUS_3                          17                           154
  CLUS_4                          10                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q31.1) MUTATED       25     13     31      8
  DEL PEAK 20(7Q31.1) WILD-TYPE    151     90    139     57
D48V6, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          25                           151
  CLUS_2                          13                            90
  CLUS_3                          31                           139
  CLUS_4                           8                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(7Q31.1) MUTATED       22     26     13     10      6
  DEL PEAK 20(7Q31.1) WILD-TYPE     59    113    118     81     70
D48V7, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          22                            59
  CLUS_2                          26                           113
  CLUS_3                          13                           118
  CLUS_4                          10                            81
  CLUS_5                           6                            70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q31.1) MUTATED       25     28     24
  DEL PEAK 20(7Q31.1) WILD-TYPE    165    114    162
D48V8, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          25                           165
  CLUS_2                          28                           114
  CLUS_3                          24                           162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q31.1) MUTATED       21     21     26
  DEL PEAK 20(7Q31.1) WILD-TYPE    120    168    117
D48V9, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          21                           120
  CLUS_2                          21                           168
  CLUS_3                          26                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q31.1) MUTATED       24     19     25
  DEL PEAK 20(7Q31.1) WILD-TYPE    147     85    173
D48V10, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          24                           147
  CLUS_2                          19                            85
  CLUS_3                          25                           173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 21(7Q36.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(7Q36.1) MUTATED       71     29     18     14
  DEL PEAK 21(7Q36.1) WILD-TYPE    132     99    127     32
D49V1, multiclass
        clus
vv       DEL PEAK 21(7Q36.1) MUTATED DEL PEAK 21(7Q36.1) WILD-TYPE
  CLUS_1                          71                           132
  CLUS_2                          29                            99
  CLUS_3                          18                           127
  CLUS_4                          14                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(7Q36.1) MUTATED       22     25     20     27     20     15
  DEL PEAK 21(7Q36.1) WILD-TYPE     62     62     83     62     58     60
                               vv
clus                            CLUS_7
  DEL PEAK 21(7Q36.1) MUTATED        3
  DEL PEAK 21(7Q36.1) WILD-TYPE      3
D49V2, multiclass
        clus
vv       DEL PEAK 21(7Q36.1) MUTATED DEL PEAK 21(7Q36.1) WILD-TYPE
  CLUS_1                          22                            62
  CLUS_2                          25                            62
  CLUS_3                          20                            83
  CLUS_4                          27                            62
  CLUS_5                          20                            58
  CLUS_6                          15                            60
  CLUS_7                           3                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(7Q36.1) MUTATED       17      9     11      7     13
  DEL PEAK 21(7Q36.1) WILD-TYPE     33     20     20     22     54
D49V3, multiclass
        clus
vv       DEL PEAK 21(7Q36.1) MUTATED DEL PEAK 21(7Q36.1) WILD-TYPE
  CLUS_1                          17                            33
  CLUS_2                           9                            20
  CLUS_3                          11                            20
  CLUS_4                           7                            22
  CLUS_5                          13                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q36.1) MUTATED       21     25     11
  DEL PEAK 21(7Q36.1) WILD-TYPE     55     57     37
D49V4, multiclass
        clus
vv       DEL PEAK 21(7Q36.1) MUTATED DEL PEAK 21(7Q36.1) WILD-TYPE
  CLUS_1                          21                            55
  CLUS_2                          25                            57
  CLUS_3                          11                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(7Q36.1) MUTATED       46     21     41     23
  DEL PEAK 21(7Q36.1) WILD-TYPE     89     92    130     72
D49V5, multiclass
        clus
vv       DEL PEAK 21(7Q36.1) MUTATED DEL PEAK 21(7Q36.1) WILD-TYPE
  CLUS_1                          46                            89
  CLUS_2                          21                            92
  CLUS_3                          41                           130
  CLUS_4                          23                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(7Q36.1) MUTATED       43     28     46     14
  DEL PEAK 21(7Q36.1) WILD-TYPE    133     75    124     51
D49V6, multiclass
        clus
vv       DEL PEAK 21(7Q36.1) MUTATED DEL PEAK 21(7Q36.1) WILD-TYPE
  CLUS_1                          43                           133
  CLUS_2                          28                            75
  CLUS_3                          46                           124
  CLUS_4                          14                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(7Q36.1) MUTATED       30     37     26     14     23
  DEL PEAK 21(7Q36.1) WILD-TYPE     51    102    105     77     53
D49V7, multiclass
        clus
vv       DEL PEAK 21(7Q36.1) MUTATED DEL PEAK 21(7Q36.1) WILD-TYPE
  CLUS_1                          30                            51
  CLUS_2                          37                           102
  CLUS_3                          26                           105
  CLUS_4                          14                            77
  CLUS_5                          23                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q36.1) MUTATED       46     42     42
  DEL PEAK 21(7Q36.1) WILD-TYPE    144    100    144
D49V8, multiclass
        clus
vv       DEL PEAK 21(7Q36.1) MUTATED DEL PEAK 21(7Q36.1) WILD-TYPE
  CLUS_1                          46                           144
  CLUS_2                          42                           100
  CLUS_3                          42                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q36.1) MUTATED       38     41     36
  DEL PEAK 21(7Q36.1) WILD-TYPE    103    148    107
D49V9, multiclass
        clus
vv       DEL PEAK 21(7Q36.1) MUTATED DEL PEAK 21(7Q36.1) WILD-TYPE
  CLUS_1                          38                           103
  CLUS_2                          41                           148
  CLUS_3                          36                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q36.1) MUTATED       41     31     43
  DEL PEAK 21(7Q36.1) WILD-TYPE    130     73    155
D49V10, multiclass
        clus
vv       DEL PEAK 21(7Q36.1) MUTATED DEL PEAK 21(7Q36.1) WILD-TYPE
  CLUS_1                          41                           130
  CLUS_2                          31                            73
  CLUS_3                          43                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 22(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(8P23.2) MUTATED      169     59     49     28
  DEL PEAK 22(8P23.2) WILD-TYPE     34     69     96     18
D50V1, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                         169                            34
  CLUS_2                          59                            69
  CLUS_3                          49                            96
  CLUS_4                          28                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(8P23.2) MUTATED       49     47     68     63     16     56
  DEL PEAK 22(8P23.2) WILD-TYPE     35     40     35     26     62     19
                               vv
clus                            CLUS_7
  DEL PEAK 22(8P23.2) MUTATED        6
  DEL PEAK 22(8P23.2) WILD-TYPE      0
D50V2, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                          49                            35
  CLUS_2                          47                            40
  CLUS_3                          68                            35
  CLUS_4                          63                            26
  CLUS_5                          16                            62
  CLUS_6                          56                            19
  CLUS_7                           6                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(8P23.2) MUTATED       33     14     14     18     46
  DEL PEAK 22(8P23.2) WILD-TYPE     17     15     17     11     21
D50V3, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                          33                            17
  CLUS_2                          14                            15
  CLUS_3                          14                            17
  CLUS_4                          18                            11
  CLUS_5                          46                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(8P23.2) MUTATED       50     50     25
  DEL PEAK 22(8P23.2) WILD-TYPE     26     32     23
D50V4, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                          50                            26
  CLUS_2                          50                            32
  CLUS_3                          25                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(8P23.2) MUTATED      101     67     67     65
  DEL PEAK 22(8P23.2) WILD-TYPE     34     46    104     30
D50V5, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                         101                            34
  CLUS_2                          67                            46
  CLUS_3                          67                           104
  CLUS_4                          65                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(8P23.2) MUTATED      115     62    112     11
  DEL PEAK 22(8P23.2) WILD-TYPE     61     41     58     54
D50V6, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                         115                            61
  CLUS_2                          62                            41
  CLUS_3                         112                            58
  CLUS_4                          11                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(8P23.2) MUTATED       53     93     46     64     47
  DEL PEAK 22(8P23.2) WILD-TYPE     28     46     85     27     29
D50V7, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                          53                            28
  CLUS_2                          93                            46
  CLUS_3                          46                            85
  CLUS_4                          64                            27
  CLUS_5                          47                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(8P23.2) MUTATED      125     87     91
  DEL PEAK 22(8P23.2) WILD-TYPE     65     55     95
D50V8, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                         125                            65
  CLUS_2                          87                            55
  CLUS_3                          91                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(8P23.2) MUTATED       92    113     71
  DEL PEAK 22(8P23.2) WILD-TYPE     49     76     72
D50V9, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                          92                            49
  CLUS_2                         113                            76
  CLUS_3                          71                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(8P23.2) MUTATED      114     70     92
  DEL PEAK 22(8P23.2) WILD-TYPE     57     34    106
D50V10, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                         114                            57
  CLUS_2                          70                            34
  CLUS_3                          92                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 23(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P23) MUTATED      132     76     29      2
  DEL PEAK 23(9P23) WILD-TYPE     71     52    116     44
D51V1, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                       132                          71
  CLUS_2                        76                          52
  CLUS_3                        29                         116
  CLUS_4                         2                          44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 23(9P23) MUTATED       28     64     35     63      9     37      3
  DEL PEAK 23(9P23) WILD-TYPE     56     23     68     26     69     38      3
D51V2, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        28                          56
  CLUS_2                        64                          23
  CLUS_3                        35                          68
  CLUS_4                        63                          26
  CLUS_5                         9                          69
  CLUS_6                        37                          38
  CLUS_7                         3                           3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(9P23) MUTATED       19     12     19     11     37
  DEL PEAK 23(9P23) WILD-TYPE     31     17     12     18     30
D51V3, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        19                          31
  CLUS_2                        12                          17
  CLUS_3                        19                          12
  CLUS_4                        11                          18
  CLUS_5                        37                          30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P23) MUTATED       29     44     25
  DEL PEAK 23(9P23) WILD-TYPE     47     38     23
D51V4, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        29                          47
  CLUS_2                        44                          38
  CLUS_3                        25                          23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P23) MUTATED       82     40     75     40
  DEL PEAK 23(9P23) WILD-TYPE     53     73     96     55
D51V5, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        82                          53
  CLUS_2                        40                          73
  CLUS_3                        75                          96
  CLUS_4                        40                          55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P23) MUTATED       77     68     80     12
  DEL PEAK 23(9P23) WILD-TYPE     99     35     90     53
D51V6, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        77                          99
  CLUS_2                        68                          35
  CLUS_3                        80                          90
  CLUS_4                        12                          53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(9P23) MUTATED       57     64     42     38     35
  DEL PEAK 23(9P23) WILD-TYPE     24     75     89     53     41
D51V7, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        57                          24
  CLUS_2                        64                          75
  CLUS_3                        42                          89
  CLUS_4                        38                          53
  CLUS_5                        35                          41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P23) MUTATED       85     85     66
  DEL PEAK 23(9P23) WILD-TYPE    105     57    120
D51V8, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        85                         105
  CLUS_2                        85                          57
  CLUS_3                        66                         120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P23) MUTATED       69     80     66
  DEL PEAK 23(9P23) WILD-TYPE     72    109     77
D51V9, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        69                          72
  CLUS_2                        80                         109
  CLUS_3                        66                          77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P23) MUTATED       78     48     89
  DEL PEAK 23(9P23) WILD-TYPE     93     56    109
D51V10, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        78                          93
  CLUS_2                        48                          56
  CLUS_3                        89                         109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 24(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.3) MUTATED      148     90     53     11
  DEL PEAK 24(9P21.3) WILD-TYPE     55     38     92     35
D52V1, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                         148                            55
  CLUS_2                          90                            38
  CLUS_3                          53                            92
  CLUS_4                          11                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(9P21.3) MUTATED       43     73     54     67     11     49
  DEL PEAK 24(9P21.3) WILD-TYPE     41     14     49     22     67     26
                               vv
clus                            CLUS_7
  DEL PEAK 24(9P21.3) MUTATED        5
  DEL PEAK 24(9P21.3) WILD-TYPE      1
D52V2, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          43                            41
  CLUS_2                          73                            14
  CLUS_3                          54                            49
  CLUS_4                          67                            22
  CLUS_5                          11                            67
  CLUS_6                          49                            26
  CLUS_7                           5                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(9P21.3) MUTATED       28     14     22     18     48
  DEL PEAK 24(9P21.3) WILD-TYPE     22     15      9     11     19
D52V3, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          28                            22
  CLUS_2                          14                            15
  CLUS_3                          22                             9
  CLUS_4                          18                            11
  CLUS_5                          48                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P21.3) MUTATED       44     52     34
  DEL PEAK 24(9P21.3) WILD-TYPE     32     30     14
D52V4, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          44                            32
  CLUS_2                          52                            30
  CLUS_3                          34                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.3) MUTATED      100     64     80     56
  DEL PEAK 24(9P21.3) WILD-TYPE     35     49     91     39
D52V5, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                         100                            35
  CLUS_2                          64                            49
  CLUS_3                          80                            91
  CLUS_4                          56                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.3) MUTATED      103     75    107     15
  DEL PEAK 24(9P21.3) WILD-TYPE     73     28     63     50
D52V6, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                         103                            73
  CLUS_2                          75                            28
  CLUS_3                         107                            63
  CLUS_4                          15                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(9P21.3) MUTATED       67     79     53     54     47
  DEL PEAK 24(9P21.3) WILD-TYPE     14     60     78     37     29
D52V7, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          67                            14
  CLUS_2                          79                            60
  CLUS_3                          53                            78
  CLUS_4                          54                            37
  CLUS_5                          47                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P21.3) MUTATED      113    108     79
  DEL PEAK 24(9P21.3) WILD-TYPE     77     34    107
D52V8, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                         113                            77
  CLUS_2                         108                            34
  CLUS_3                          79                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P21.3) MUTATED       89    104     79
  DEL PEAK 24(9P21.3) WILD-TYPE     52     85     64
D52V9, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          89                            52
  CLUS_2                         104                            85
  CLUS_3                          79                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P21.3) MUTATED       99     70    103
  DEL PEAK 24(9P21.3) WILD-TYPE     72     34     95
D52V10, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          99                            72
  CLUS_2                          70                            34
  CLUS_3                         103                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 25(9Q21.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED       70     27     10      1
  DEL PEAK 25(9Q21.11) WILD-TYPE    133    101    135     45
D53V1, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           70                            133
  CLUS_2                           27                            101
  CLUS_3                           10                            135
  CLUS_4                            1                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(9Q21.11) MUTATED       13     32     10     27      4     19
  DEL PEAK 25(9Q21.11) WILD-TYPE     71     55     93     62     74     56
                                vv
clus                             CLUS_7
  DEL PEAK 25(9Q21.11) MUTATED        3
  DEL PEAK 25(9Q21.11) WILD-TYPE      3
D53V2, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           13                             71
  CLUS_2                           32                             55
  CLUS_3                           10                             93
  CLUS_4                           27                             62
  CLUS_5                            4                             74
  CLUS_6                           19                             56
  CLUS_7                            3                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(9Q21.11) MUTATED        7      4      8      5     13
  DEL PEAK 25(9Q21.11) WILD-TYPE     43     25     23     24     54
D53V3, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                            7                             43
  CLUS_2                            4                             25
  CLUS_3                            8                             23
  CLUS_4                            5                             24
  CLUS_5                           13                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q21.11) MUTATED       10     15     12
  DEL PEAK 25(9Q21.11) WILD-TYPE     66     67     36
D53V4, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           10                             66
  CLUS_2                           15                             67
  CLUS_3                           12                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED       39     21     31     16
  DEL PEAK 25(9Q21.11) WILD-TYPE     96     92    140     79
D53V5, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           39                             96
  CLUS_2                           21                             92
  CLUS_3                           31                            140
  CLUS_4                           16                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED       33     28     40      6
  DEL PEAK 25(9Q21.11) WILD-TYPE    143     75    130     59
D53V6, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           33                            143
  CLUS_2                           28                             75
  CLUS_3                           40                            130
  CLUS_4                            6                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(9Q21.11) MUTATED       30     29     19     17     11
  DEL PEAK 25(9Q21.11) WILD-TYPE     51    110    112     74     65
D53V7, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           30                             51
  CLUS_2                           29                            110
  CLUS_3                           19                            112
  CLUS_4                           17                             74
  CLUS_5                           11                             65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q21.11) MUTATED       33     45     28
  DEL PEAK 25(9Q21.11) WILD-TYPE    157     97    158
D53V8, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           33                            157
  CLUS_2                           45                             97
  CLUS_3                           28                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q21.11) MUTATED       33     41     25
  DEL PEAK 25(9Q21.11) WILD-TYPE    108    148    118
D53V9, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           33                            108
  CLUS_2                           41                            148
  CLUS_3                           25                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q21.11) MUTATED       30     29     40
  DEL PEAK 25(9Q21.11) WILD-TYPE    141     75    158
D53V10, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           30                            141
  CLUS_2                           29                             75
  CLUS_3                           40                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 26(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(9Q34.3) MUTATED       49     16     13      1
  DEL PEAK 26(9Q34.3) WILD-TYPE    154    112    132     45
D54V1, multiclass
        clus
vv       DEL PEAK 26(9Q34.3) MUTATED DEL PEAK 26(9Q34.3) WILD-TYPE
  CLUS_1                          49                           154
  CLUS_2                          16                           112
  CLUS_3                          13                           132
  CLUS_4                           1                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(9Q34.3) MUTATED        6     25      8     15      7     17
  DEL PEAK 26(9Q34.3) WILD-TYPE     78     62     95     74     71     58
                               vv
clus                            CLUS_7
  DEL PEAK 26(9Q34.3) MUTATED        1
  DEL PEAK 26(9Q34.3) WILD-TYPE      5
D54V2, multiclass
        clus
vv       DEL PEAK 26(9Q34.3) MUTATED DEL PEAK 26(9Q34.3) WILD-TYPE
  CLUS_1                           6                            78
  CLUS_2                          25                            62
  CLUS_3                           8                            95
  CLUS_4                          15                            74
  CLUS_5                           7                            71
  CLUS_6                          17                            58
  CLUS_7                           1                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(9Q34.3) MUTATED        6      5      6      3     11
  DEL PEAK 26(9Q34.3) WILD-TYPE     44     24     25     26     56
D54V3, multiclass
        clus
vv       DEL PEAK 26(9Q34.3) MUTATED DEL PEAK 26(9Q34.3) WILD-TYPE
  CLUS_1                           6                            44
  CLUS_2                           5                            24
  CLUS_3                           6                            25
  CLUS_4                           3                            26
  CLUS_5                          11                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(9Q34.3) MUTATED        8     15      8
  DEL PEAK 26(9Q34.3) WILD-TYPE     68     67     40
D54V4, multiclass
        clus
vv       DEL PEAK 26(9Q34.3) MUTATED DEL PEAK 26(9Q34.3) WILD-TYPE
  CLUS_1                           8                            68
  CLUS_2                          15                            67
  CLUS_3                           8                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(9Q34.3) MUTATED       26     15     22     14
  DEL PEAK 26(9Q34.3) WILD-TYPE    109     98    149     81
D54V5, multiclass
        clus
vv       DEL PEAK 26(9Q34.3) MUTATED DEL PEAK 26(9Q34.3) WILD-TYPE
  CLUS_1                          26                           109
  CLUS_2                          15                            98
  CLUS_3                          22                           149
  CLUS_4                          14                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(9Q34.3) MUTATED       29     19     22      7
  DEL PEAK 26(9Q34.3) WILD-TYPE    147     84    148     58
D54V6, multiclass
        clus
vv       DEL PEAK 26(9Q34.3) MUTATED DEL PEAK 26(9Q34.3) WILD-TYPE
  CLUS_1                          29                           147
  CLUS_2                          19                            84
  CLUS_3                          22                           148
  CLUS_4                           7                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(9Q34.3) MUTATED       16     21     18     14     10
  DEL PEAK 26(9Q34.3) WILD-TYPE     65    118    113     77     66
D54V7, multiclass
        clus
vv       DEL PEAK 26(9Q34.3) MUTATED DEL PEAK 26(9Q34.3) WILD-TYPE
  CLUS_1                          16                            65
  CLUS_2                          21                           118
  CLUS_3                          18                           113
  CLUS_4                          14                            77
  CLUS_5                          10                            66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(9Q34.3) MUTATED       28     32     19
  DEL PEAK 26(9Q34.3) WILD-TYPE    162    110    167
D54V8, multiclass
        clus
vv       DEL PEAK 26(9Q34.3) MUTATED DEL PEAK 26(9Q34.3) WILD-TYPE
  CLUS_1                          28                           162
  CLUS_2                          32                           110
  CLUS_3                          19                           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(9Q34.3) MUTATED       27     28     20
  DEL PEAK 26(9Q34.3) WILD-TYPE    114    161    123
D54V9, multiclass
        clus
vv       DEL PEAK 26(9Q34.3) MUTATED DEL PEAK 26(9Q34.3) WILD-TYPE
  CLUS_1                          27                           114
  CLUS_2                          28                           161
  CLUS_3                          20                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(9Q34.3) MUTATED       24     22     29
  DEL PEAK 26(9Q34.3) WILD-TYPE    147     82    169
D54V10, multiclass
        clus
vv       DEL PEAK 26(9Q34.3) MUTATED DEL PEAK 26(9Q34.3) WILD-TYPE
  CLUS_1                          24                           147
  CLUS_2                          22                            82
  CLUS_3                          29                           169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 27(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10P15.3) MUTATED       98     36     17     19
  DEL PEAK 27(10P15.3) WILD-TYPE    105     92    128     27
D55V1, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           98                            105
  CLUS_2                           36                             92
  CLUS_3                           17                            128
  CLUS_4                           19                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(10P15.3) MUTATED       18     27     35     43     10     34
  DEL PEAK 27(10P15.3) WILD-TYPE     66     60     68     46     68     41
                                vv
clus                             CLUS_7
  DEL PEAK 27(10P15.3) MUTATED        3
  DEL PEAK 27(10P15.3) WILD-TYPE      3
D55V2, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           18                             66
  CLUS_2                           27                             60
  CLUS_3                           35                             68
  CLUS_4                           43                             46
  CLUS_5                           10                             68
  CLUS_6                           34                             41
  CLUS_7                            3                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10P15.3) MUTATED       17      9      9     13     23
  DEL PEAK 27(10P15.3) WILD-TYPE     33     20     22     16     44
D55V3, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           17                             33
  CLUS_2                            9                             20
  CLUS_3                            9                             22
  CLUS_4                           13                             16
  CLUS_5                           23                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P15.3) MUTATED       29     27     15
  DEL PEAK 27(10P15.3) WILD-TYPE     47     55     33
D55V4, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           29                             47
  CLUS_2                           27                             55
  CLUS_3                           15                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10P15.3) MUTATED       61     28     44     35
  DEL PEAK 27(10P15.3) WILD-TYPE     74     85    127     60
D55V5, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           61                             74
  CLUS_2                           28                             85
  CLUS_3                           44                            127
  CLUS_4                           35                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10P15.3) MUTATED       66     33     60      9
  DEL PEAK 27(10P15.3) WILD-TYPE    110     70    110     56
D55V6, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           66                            110
  CLUS_2                           33                             70
  CLUS_3                           60                            110
  CLUS_4                            9                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10P15.3) MUTATED       38     34     33     41     22
  DEL PEAK 27(10P15.3) WILD-TYPE     43    105     98     50     54
D55V7, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           38                             43
  CLUS_2                           34                            105
  CLUS_3                           33                             98
  CLUS_4                           41                             50
  CLUS_5                           22                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P15.3) MUTATED       67     52     49
  DEL PEAK 27(10P15.3) WILD-TYPE    123     90    137
D55V8, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           67                            123
  CLUS_2                           52                             90
  CLUS_3                           49                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P15.3) MUTATED       57     50     48
  DEL PEAK 27(10P15.3) WILD-TYPE     84    139     95
D55V9, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           57                             84
  CLUS_2                           50                            139
  CLUS_3                           48                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10P15.3) MUTATED       57     37     61
  DEL PEAK 27(10P15.3) WILD-TYPE    114     67    137
D55V10, multiclass
        clus
vv       DEL PEAK 27(10P15.3) MUTATED DEL PEAK 27(10P15.3) WILD-TYPE
  CLUS_1                           57                            114
  CLUS_2                           37                             67
  CLUS_3                           61                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 28(10P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10P11.21) MUTATED       98     38     12     15
  DEL PEAK 28(10P11.21) WILD-TYPE    105     90    133     31
D56V1, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            98                             105
  CLUS_2                            38                              90
  CLUS_3                            12                             133
  CLUS_4                            15                              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(10P11.21) MUTATED       14     28     29     42     12     35
  DEL PEAK 28(10P11.21) WILD-TYPE     70     59     74     47     66     40
                                 vv
clus                              CLUS_7
  DEL PEAK 28(10P11.21) MUTATED        3
  DEL PEAK 28(10P11.21) WILD-TYPE      3
D56V2, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            14                              70
  CLUS_2                            28                              59
  CLUS_3                            29                              74
  CLUS_4                            42                              47
  CLUS_5                            12                              66
  CLUS_6                            35                              40
  CLUS_7                             3                               3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(10P11.21) MUTATED       18      7     10     13     21
  DEL PEAK 28(10P11.21) WILD-TYPE     32     22     21     16     46
D56V3, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            18                              32
  CLUS_2                             7                              22
  CLUS_3                            10                              21
  CLUS_4                            13                              16
  CLUS_5                            21                              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10P11.21) MUTATED       31     23     15
  DEL PEAK 28(10P11.21) WILD-TYPE     45     59     33
D56V4, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            31                              45
  CLUS_2                            23                              59
  CLUS_3                            15                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10P11.21) MUTATED       64     24     45     28
  DEL PEAK 28(10P11.21) WILD-TYPE     71     89    126     67
D56V5, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            64                              71
  CLUS_2                            24                              89
  CLUS_3                            45                             126
  CLUS_4                            28                              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10P11.21) MUTATED       60     35     56     10
  DEL PEAK 28(10P11.21) WILD-TYPE    116     68    114     55
D56V6, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            60                             116
  CLUS_2                            35                              68
  CLUS_3                            56                             114
  CLUS_4                            10                              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(10P11.21) MUTATED       41     33     32     38     17
  DEL PEAK 28(10P11.21) WILD-TYPE     40    106     99     53     59
D56V7, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            41                              40
  CLUS_2                            33                             106
  CLUS_3                            32                              99
  CLUS_4                            38                              53
  CLUS_5                            17                              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10P11.21) MUTATED       62     55     44
  DEL PEAK 28(10P11.21) WILD-TYPE    128     87    142
D56V8, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            62                             128
  CLUS_2                            55                              87
  CLUS_3                            44                             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10P11.21) MUTATED       49     48     54
  DEL PEAK 28(10P11.21) WILD-TYPE     92    141     89
D56V9, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            49                              92
  CLUS_2                            48                             141
  CLUS_3                            54                              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10P11.21) MUTATED       52     34     65
  DEL PEAK 28(10P11.21) WILD-TYPE    119     70    133
D56V10, multiclass
        clus
vv       DEL PEAK 28(10P11.21) MUTATED DEL PEAK 28(10P11.21) WILD-TYPE
  CLUS_1                            52                             119
  CLUS_2                            34                              70
  CLUS_3                            65                             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 29(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(10Q23.31) MUTATED       60     50     18     10
  DEL PEAK 29(10Q23.31) WILD-TYPE    143     78    127     36
D57V1, multiclass
        clus
vv       DEL PEAK 29(10Q23.31) MUTATED DEL PEAK 29(10Q23.31) WILD-TYPE
  CLUS_1                            60                             143
  CLUS_2                            50                              78
  CLUS_3                            18                             127
  CLUS_4                            10                              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(10Q23.31) MUTATED        8     29     12     38     24     24
  DEL PEAK 29(10Q23.31) WILD-TYPE     76     58     91     51     54     51
                                 vv
clus                              CLUS_7
  DEL PEAK 29(10Q23.31) MUTATED        3
  DEL PEAK 29(10Q23.31) WILD-TYPE      3
D57V2, multiclass
        clus
vv       DEL PEAK 29(10Q23.31) MUTATED DEL PEAK 29(10Q23.31) WILD-TYPE
  CLUS_1                             8                              76
  CLUS_2                            29                              58
  CLUS_3                            12                              91
  CLUS_4                            38                              51
  CLUS_5                            24                              54
  CLUS_6                            24                              51
  CLUS_7                             3                               3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(10Q23.31) MUTATED       15      6     13      5     17
  DEL PEAK 29(10Q23.31) WILD-TYPE     35     23     18     24     50
D57V3, multiclass
        clus
vv       DEL PEAK 29(10Q23.31) MUTATED DEL PEAK 29(10Q23.31) WILD-TYPE
  CLUS_1                            15                              35
  CLUS_2                             6                              23
  CLUS_3                            13                              18
  CLUS_4                             5                              24
  CLUS_5                            17                              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(10Q23.31) MUTATED       20     23     13
  DEL PEAK 29(10Q23.31) WILD-TYPE     56     59     35
D57V4, multiclass
        clus
vv       DEL PEAK 29(10Q23.31) MUTATED DEL PEAK 29(10Q23.31) WILD-TYPE
  CLUS_1                            20                              56
  CLUS_2                            23                              59
  CLUS_3                            13                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(10Q23.31) MUTATED       35     17     63     21
  DEL PEAK 29(10Q23.31) WILD-TYPE    100     96    108     74
D57V5, multiclass
        clus
vv       DEL PEAK 29(10Q23.31) MUTATED DEL PEAK 29(10Q23.31) WILD-TYPE
  CLUS_1                            35                             100
  CLUS_2                            17                              96
  CLUS_3                            63                             108
  CLUS_4                            21                              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(10Q23.31) MUTATED       45     39     31     21
  DEL PEAK 29(10Q23.31) WILD-TYPE    131     64    139     44
D57V6, multiclass
        clus
vv       DEL PEAK 29(10Q23.31) MUTATED DEL PEAK 29(10Q23.31) WILD-TYPE
  CLUS_1                            45                             131
  CLUS_2                            39                              64
  CLUS_3                            31                             139
  CLUS_4                            21                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(10Q23.31) MUTATED       29     25     47     23     11
  DEL PEAK 29(10Q23.31) WILD-TYPE     52    114     84     68     65
D57V7, multiclass
        clus
vv       DEL PEAK 29(10Q23.31) MUTATED DEL PEAK 29(10Q23.31) WILD-TYPE
  CLUS_1                            29                              52
  CLUS_2                            25                             114
  CLUS_3                            47                              84
  CLUS_4                            23                              68
  CLUS_5                            11                              65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(10Q23.31) MUTATED       49     42     44
  DEL PEAK 29(10Q23.31) WILD-TYPE    141    100    142
D57V8, multiclass
        clus
vv       DEL PEAK 29(10Q23.31) MUTATED DEL PEAK 29(10Q23.31) WILD-TYPE
  CLUS_1                            49                             141
  CLUS_2                            42                             100
  CLUS_3                            44                             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(10Q23.31) MUTATED       41     43     41
  DEL PEAK 29(10Q23.31) WILD-TYPE    100    146    102
D57V9, multiclass
        clus
vv       DEL PEAK 29(10Q23.31) MUTATED DEL PEAK 29(10Q23.31) WILD-TYPE
  CLUS_1                            41                             100
  CLUS_2                            43                             146
  CLUS_3                            41                             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(10Q23.31) MUTATED       43     24     58
  DEL PEAK 29(10Q23.31) WILD-TYPE    128     80    140
D57V10, multiclass
        clus
vv       DEL PEAK 29(10Q23.31) MUTATED DEL PEAK 29(10Q23.31) WILD-TYPE
  CLUS_1                            43                             128
  CLUS_2                            24                              80
  CLUS_3                            58                             140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 30(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11P15.5) MUTATED       69     70     17      7
  DEL PEAK 30(11P15.5) WILD-TYPE    134     58    128     39
D58V1, multiclass
        clus
vv       DEL PEAK 30(11P15.5) MUTATED DEL PEAK 30(11P15.5) WILD-TYPE
  CLUS_1                           69                            134
  CLUS_2                           70                             58
  CLUS_3                           17                            128
  CLUS_4                            7                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(11P15.5) MUTATED       19     31     14     53     26     19
  DEL PEAK 30(11P15.5) WILD-TYPE     65     56     89     36     52     56
                                vv
clus                             CLUS_7
  DEL PEAK 30(11P15.5) MUTATED        1
  DEL PEAK 30(11P15.5) WILD-TYPE      5
D58V2, multiclass
        clus
vv       DEL PEAK 30(11P15.5) MUTATED DEL PEAK 30(11P15.5) WILD-TYPE
  CLUS_1                           19                             65
  CLUS_2                           31                             56
  CLUS_3                           14                             89
  CLUS_4                           53                             36
  CLUS_5                           26                             52
  CLUS_6                           19                             56
  CLUS_7                            1                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(11P15.5) MUTATED       15      8     13     10     21
  DEL PEAK 30(11P15.5) WILD-TYPE     35     21     18     19     46
D58V3, multiclass
        clus
vv       DEL PEAK 30(11P15.5) MUTATED DEL PEAK 30(11P15.5) WILD-TYPE
  CLUS_1                           15                             35
  CLUS_2                            8                             21
  CLUS_3                           13                             18
  CLUS_4                           10                             19
  CLUS_5                           21                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11P15.5) MUTATED       21     32     14
  DEL PEAK 30(11P15.5) WILD-TYPE     55     50     34
D58V4, multiclass
        clus
vv       DEL PEAK 30(11P15.5) MUTATED DEL PEAK 30(11P15.5) WILD-TYPE
  CLUS_1                           21                             55
  CLUS_2                           32                             50
  CLUS_3                           14                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11P15.5) MUTATED       50     21     66     24
  DEL PEAK 30(11P15.5) WILD-TYPE     85     92    105     71
D58V5, multiclass
        clus
vv       DEL PEAK 30(11P15.5) MUTATED DEL PEAK 30(11P15.5) WILD-TYPE
  CLUS_1                           50                             85
  CLUS_2                           21                             92
  CLUS_3                           66                            105
  CLUS_4                           24                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11P15.5) MUTATED       42     43     52     24
  DEL PEAK 30(11P15.5) WILD-TYPE    134     60    118     41
D58V6, multiclass
        clus
vv       DEL PEAK 30(11P15.5) MUTATED DEL PEAK 30(11P15.5) WILD-TYPE
  CLUS_1                           42                            134
  CLUS_2                           43                             60
  CLUS_3                           52                            118
  CLUS_4                           24                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(11P15.5) MUTATED       35     22     53     32     21
  DEL PEAK 30(11P15.5) WILD-TYPE     46    117     78     59     55
D58V7, multiclass
        clus
vv       DEL PEAK 30(11P15.5) MUTATED DEL PEAK 30(11P15.5) WILD-TYPE
  CLUS_1                           35                             46
  CLUS_2                           22                            117
  CLUS_3                           53                             78
  CLUS_4                           32                             59
  CLUS_5                           21                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11P15.5) MUTATED       46     59     58
  DEL PEAK 30(11P15.5) WILD-TYPE    144     83    128
D58V8, multiclass
        clus
vv       DEL PEAK 30(11P15.5) MUTATED DEL PEAK 30(11P15.5) WILD-TYPE
  CLUS_1                           46                            144
  CLUS_2                           59                             83
  CLUS_3                           58                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11P15.5) MUTATED       41     54     51
  DEL PEAK 30(11P15.5) WILD-TYPE    100    135     92
D58V9, multiclass
        clus
vv       DEL PEAK 30(11P15.5) MUTATED DEL PEAK 30(11P15.5) WILD-TYPE
  CLUS_1                           41                            100
  CLUS_2                           54                            135
  CLUS_3                           51                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11P15.5) MUTATED       40     32     74
  DEL PEAK 30(11P15.5) WILD-TYPE    131     72    124
D58V10, multiclass
        clus
vv       DEL PEAK 30(11P15.5) MUTATED DEL PEAK 30(11P15.5) WILD-TYPE
  CLUS_1                           40                            131
  CLUS_2                           32                             72
  CLUS_3                           74                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 31(11Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(11Q23.1) MUTATED      108     75     43     20
  DEL PEAK 31(11Q23.1) WILD-TYPE     95     53    102     26
D59V1, multiclass
        clus
vv       DEL PEAK 31(11Q23.1) MUTATED DEL PEAK 31(11Q23.1) WILD-TYPE
  CLUS_1                          108                             95
  CLUS_2                           75                             53
  CLUS_3                           43                            102
  CLUS_4                           20                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(11Q23.1) MUTATED       27     35     27     48     65     41
  DEL PEAK 31(11Q23.1) WILD-TYPE     57     52     76     41     13     34
                                vv
clus                             CLUS_7
  DEL PEAK 31(11Q23.1) MUTATED        3
  DEL PEAK 31(11Q23.1) WILD-TYPE      3
D59V2, multiclass
        clus
vv       DEL PEAK 31(11Q23.1) MUTATED DEL PEAK 31(11Q23.1) WILD-TYPE
  CLUS_1                           27                             57
  CLUS_2                           35                             52
  CLUS_3                           27                             76
  CLUS_4                           48                             41
  CLUS_5                           65                             13
  CLUS_6                           41                             34
  CLUS_7                            3                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(11Q23.1) MUTATED       22     19     14     14     29
  DEL PEAK 31(11Q23.1) WILD-TYPE     28     10     17     15     38
D59V3, multiclass
        clus
vv       DEL PEAK 31(11Q23.1) MUTATED DEL PEAK 31(11Q23.1) WILD-TYPE
  CLUS_1                           22                             28
  CLUS_2                           19                             10
  CLUS_3                           14                             17
  CLUS_4                           14                             15
  CLUS_5                           29                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(11Q23.1) MUTATED       39     42     17
  DEL PEAK 31(11Q23.1) WILD-TYPE     37     40     31
D59V4, multiclass
        clus
vv       DEL PEAK 31(11Q23.1) MUTATED DEL PEAK 31(11Q23.1) WILD-TYPE
  CLUS_1                           39                             37
  CLUS_2                           42                             40
  CLUS_3                           17                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(11Q23.1) MUTATED       69     33    102     38
  DEL PEAK 31(11Q23.1) WILD-TYPE     66     80     69     57
D59V5, multiclass
        clus
vv       DEL PEAK 31(11Q23.1) MUTATED DEL PEAK 31(11Q23.1) WILD-TYPE
  CLUS_1                           69                             66
  CLUS_2                           33                             80
  CLUS_3                          102                             69
  CLUS_4                           38                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(11Q23.1) MUTATED       74     42     71     55
  DEL PEAK 31(11Q23.1) WILD-TYPE    102     61     99     10
D59V6, multiclass
        clus
vv       DEL PEAK 31(11Q23.1) MUTATED DEL PEAK 31(11Q23.1) WILD-TYPE
  CLUS_1                           74                            102
  CLUS_2                           42                             61
  CLUS_3                           71                             99
  CLUS_4                           55                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(11Q23.1) MUTATED       36     49     88     38     34
  DEL PEAK 31(11Q23.1) WILD-TYPE     45     90     43     53     42
D59V7, multiclass
        clus
vv       DEL PEAK 31(11Q23.1) MUTATED DEL PEAK 31(11Q23.1) WILD-TYPE
  CLUS_1                           36                             45
  CLUS_2                           49                             90
  CLUS_3                           88                             43
  CLUS_4                           38                             53
  CLUS_5                           34                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(11Q23.1) MUTATED       80     61    104
  DEL PEAK 31(11Q23.1) WILD-TYPE    110     81     82
D59V8, multiclass
        clus
vv       DEL PEAK 31(11Q23.1) MUTATED DEL PEAK 31(11Q23.1) WILD-TYPE
  CLUS_1                           80                            110
  CLUS_2                           61                             81
  CLUS_3                          104                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(11Q23.1) MUTATED       66     77     78
  DEL PEAK 31(11Q23.1) WILD-TYPE     75    112     65
D59V9, multiclass
        clus
vv       DEL PEAK 31(11Q23.1) MUTATED DEL PEAK 31(11Q23.1) WILD-TYPE
  CLUS_1                           66                             75
  CLUS_2                           77                            112
  CLUS_3                           78                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(11Q23.1) MUTATED       71     48    102
  DEL PEAK 31(11Q23.1) WILD-TYPE    100     56     96
D59V10, multiclass
        clus
vv       DEL PEAK 31(11Q23.1) MUTATED DEL PEAK 31(11Q23.1) WILD-TYPE
  CLUS_1                           71                            100
  CLUS_2                           48                             56
  CLUS_3                          102                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 32(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q24.33) MUTATED       41     18      1      3
  DEL PEAK 32(12Q24.33) WILD-TYPE    162    110    144     43
D60V1, multiclass
        clus
vv       DEL PEAK 32(12Q24.33) MUTATED DEL PEAK 32(12Q24.33) WILD-TYPE
  CLUS_1                            41                             162
  CLUS_2                            18                             110
  CLUS_3                             1                             144
  CLUS_4                             3                              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(12Q24.33) MUTATED        5     14      6     23      4     10
  DEL PEAK 32(12Q24.33) WILD-TYPE     79     73     97     66     74     65
                                 vv
clus                              CLUS_7
  DEL PEAK 32(12Q24.33) MUTATED        1
  DEL PEAK 32(12Q24.33) WILD-TYPE      5
D60V2, multiclass
        clus
vv       DEL PEAK 32(12Q24.33) MUTATED DEL PEAK 32(12Q24.33) WILD-TYPE
  CLUS_1                             5                              79
  CLUS_2                            14                              73
  CLUS_3                             6                              97
  CLUS_4                            23                              66
  CLUS_5                             4                              74
  CLUS_6                            10                              65
  CLUS_7                             1                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(12Q24.33) MUTATED        8      3      6      4      8
  DEL PEAK 32(12Q24.33) WILD-TYPE     42     26     25     25     59
D60V3, multiclass
        clus
vv       DEL PEAK 32(12Q24.33) MUTATED DEL PEAK 32(12Q24.33) WILD-TYPE
  CLUS_1                             8                              42
  CLUS_2                             3                              26
  CLUS_3                             6                              25
  CLUS_4                             4                              25
  CLUS_5                             8                              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(12Q24.33) MUTATED       12     13      4
  DEL PEAK 32(12Q24.33) WILD-TYPE     64     69     44
D60V4, multiclass
        clus
vv       DEL PEAK 32(12Q24.33) MUTATED DEL PEAK 32(12Q24.33) WILD-TYPE
  CLUS_1                            12                              64
  CLUS_2                            13                              69
  CLUS_3                             4                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q24.33) MUTATED       22     11     20      9
  DEL PEAK 32(12Q24.33) WILD-TYPE    113    102    151     86
D60V5, multiclass
        clus
vv       DEL PEAK 32(12Q24.33) MUTATED DEL PEAK 32(12Q24.33) WILD-TYPE
  CLUS_1                            22                             113
  CLUS_2                            11                             102
  CLUS_3                            20                             151
  CLUS_4                             9                              86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q24.33) MUTATED       21     19     18      4
  DEL PEAK 32(12Q24.33) WILD-TYPE    155     84    152     61
D60V6, multiclass
        clus
vv       DEL PEAK 32(12Q24.33) MUTATED DEL PEAK 32(12Q24.33) WILD-TYPE
  CLUS_1                            21                             155
  CLUS_2                            19                              84
  CLUS_3                            18                             152
  CLUS_4                             4                              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(12Q24.33) MUTATED       15     13     15      9      8
  DEL PEAK 32(12Q24.33) WILD-TYPE     66    126    116     82     68
D60V7, multiclass
        clus
vv       DEL PEAK 32(12Q24.33) MUTATED DEL PEAK 32(12Q24.33) WILD-TYPE
  CLUS_1                            15                              66
  CLUS_2                            13                             126
  CLUS_3                            15                             116
  CLUS_4                             9                              82
  CLUS_5                             8                              68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(12Q24.33) MUTATED       17     23     20
  DEL PEAK 32(12Q24.33) WILD-TYPE    173    119    166
D60V8, multiclass
        clus
vv       DEL PEAK 32(12Q24.33) MUTATED DEL PEAK 32(12Q24.33) WILD-TYPE
  CLUS_1                            17                             173
  CLUS_2                            23                             119
  CLUS_3                            20                             166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(12Q24.33) MUTATED       13     20     20
  DEL PEAK 32(12Q24.33) WILD-TYPE    128    169    123
D60V9, multiclass
        clus
vv       DEL PEAK 32(12Q24.33) MUTATED DEL PEAK 32(12Q24.33) WILD-TYPE
  CLUS_1                            13                             128
  CLUS_2                            20                             169
  CLUS_3                            20                             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(12Q24.33) MUTATED       17     11     25
  DEL PEAK 32(12Q24.33) WILD-TYPE    154     93    173
D60V10, multiclass
        clus
vv       DEL PEAK 32(12Q24.33) MUTATED DEL PEAK 32(12Q24.33) WILD-TYPE
  CLUS_1                            17                             154
  CLUS_2                            11                              93
  CLUS_3                            25                             173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 33(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED      100     94     19     20
  DEL PEAK 33(13Q12.11) WILD-TYPE    103     34    126     26
D61V1, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                           100                             103
  CLUS_2                            94                              34
  CLUS_3                            19                             126
  CLUS_4                            20                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(13Q12.11) MUTATED       21     58     28     58     25     41
  DEL PEAK 33(13Q12.11) WILD-TYPE     63     29     75     31     53     34
                                 vv
clus                              CLUS_7
  DEL PEAK 33(13Q12.11) MUTATED        2
  DEL PEAK 33(13Q12.11) WILD-TYPE      4
D61V2, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            21                              63
  CLUS_2                            58                              29
  CLUS_3                            28                              75
  CLUS_4                            58                              31
  CLUS_5                            25                              53
  CLUS_6                            41                              34
  CLUS_7                             2                               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(13Q12.11) MUTATED       18     15     20     13     32
  DEL PEAK 33(13Q12.11) WILD-TYPE     32     14     11     16     35
D61V3, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            18                              32
  CLUS_2                            15                              14
  CLUS_3                            20                              11
  CLUS_4                            13                              16
  CLUS_5                            32                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q12.11) MUTATED       32     45     21
  DEL PEAK 33(13Q12.11) WILD-TYPE     44     37     27
D61V4, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            32                              44
  CLUS_2                            45                              37
  CLUS_3                            21                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED       66     39     83     42
  DEL PEAK 33(13Q12.11) WILD-TYPE     69     74     88     53
D61V5, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            66                              69
  CLUS_2                            39                              74
  CLUS_3                            83                              88
  CLUS_4                            42                              53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED       83     66     62     19
  DEL PEAK 33(13Q12.11) WILD-TYPE     93     37    108     46
D61V6, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            83                              93
  CLUS_2                            66                              37
  CLUS_3                            62                             108
  CLUS_4                            19                              46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(13Q12.11) MUTATED       50     59     54     35     34
  DEL PEAK 33(13Q12.11) WILD-TYPE     31     80     77     56     42
D61V7, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            50                              31
  CLUS_2                            59                              80
  CLUS_3                            54                              77
  CLUS_4                            35                              56
  CLUS_5                            34                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q12.11) MUTATED       86     75     71
  DEL PEAK 33(13Q12.11) WILD-TYPE    104     67    115
D61V8, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            86                             104
  CLUS_2                            75                              67
  CLUS_3                            71                             115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q12.11) MUTATED       69     83     63
  DEL PEAK 33(13Q12.11) WILD-TYPE     72    106     80
D61V9, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            69                              72
  CLUS_2                            83                             106
  CLUS_3                            63                              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q12.11) MUTATED       75     47     93
  DEL PEAK 33(13Q12.11) WILD-TYPE     96     57    105
D61V10, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            75                              96
  CLUS_2                            47                              57
  CLUS_3                            93                             105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 34(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(13Q14.2) MUTATED       71     95     32     19
  DEL PEAK 34(13Q14.2) WILD-TYPE    132     33    113     27
D62V1, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           71                            132
  CLUS_2                           95                             33
  CLUS_3                           32                            113
  CLUS_4                           19                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(13Q14.2) MUTATED       17     50     23     49     44     32
  DEL PEAK 34(13Q14.2) WILD-TYPE     67     37     80     40     34     43
                                vv
clus                             CLUS_7
  DEL PEAK 34(13Q14.2) MUTATED        2
  DEL PEAK 34(13Q14.2) WILD-TYPE      4
D62V2, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           17                             67
  CLUS_2                           50                             37
  CLUS_3                           23                             80
  CLUS_4                           49                             40
  CLUS_5                           44                             34
  CLUS_6                           32                             43
  CLUS_7                            2                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(13Q14.2) MUTATED       18     14     17      8     26
  DEL PEAK 34(13Q14.2) WILD-TYPE     32     15     14     21     41
D62V3, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           18                             32
  CLUS_2                           14                             15
  CLUS_3                           17                             14
  CLUS_4                            8                             21
  CLUS_5                           26                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(13Q14.2) MUTATED       27     35     21
  DEL PEAK 34(13Q14.2) WILD-TYPE     49     47     27
D62V4, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           27                             49
  CLUS_2                           35                             47
  CLUS_3                           21                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(13Q14.2) MUTATED       58     31     94     32
  DEL PEAK 34(13Q14.2) WILD-TYPE     77     82     77     63
D62V5, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           58                             77
  CLUS_2                           31                             82
  CLUS_3                           94                             77
  CLUS_4                           32                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(13Q14.2) MUTATED       70     55     52     38
  DEL PEAK 34(13Q14.2) WILD-TYPE    106     48    118     27
D62V6, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           70                            106
  CLUS_2                           55                             48
  CLUS_3                           52                            118
  CLUS_4                           38                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(13Q14.2) MUTATED       42     46     70     32     26
  DEL PEAK 34(13Q14.2) WILD-TYPE     39     93     61     59     50
D62V7, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           42                             39
  CLUS_2                           46                             93
  CLUS_3                           70                             61
  CLUS_4                           32                             59
  CLUS_5                           26                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(13Q14.2) MUTATED       70     65     81
  DEL PEAK 34(13Q14.2) WILD-TYPE    120     77    105
D62V8, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           70                            120
  CLUS_2                           65                             77
  CLUS_3                           81                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(13Q14.2) MUTATED       58     78     62
  DEL PEAK 34(13Q14.2) WILD-TYPE     83    111     81
D62V9, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           58                             83
  CLUS_2                           78                            111
  CLUS_3                           62                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(13Q14.2) MUTATED       60     41     97
  DEL PEAK 34(13Q14.2) WILD-TYPE    111     63    101
D62V10, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           60                            111
  CLUS_2                           41                             63
  CLUS_3                           97                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 35(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q11.2) MUTATED       36     25     12      2
  DEL PEAK 35(14Q11.2) WILD-TYPE    167    103    133     44
D63V1, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                           36                            167
  CLUS_2                           25                            103
  CLUS_3                           12                            133
  CLUS_4                            2                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(14Q11.2) MUTATED        5     21     16     18      9      6
  DEL PEAK 35(14Q11.2) WILD-TYPE     79     66     87     71     69     69
                                vv
clus                             CLUS_7
  DEL PEAK 35(14Q11.2) MUTATED        0
  DEL PEAK 35(14Q11.2) WILD-TYPE      6
D63V2, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                            5                             79
  CLUS_2                           21                             66
  CLUS_3                           16                             87
  CLUS_4                           18                             71
  CLUS_5                            9                             69
  CLUS_6                            6                             69
  CLUS_7                            0                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(14Q11.2) MUTATED        4      4      6      7      6
  DEL PEAK 35(14Q11.2) WILD-TYPE     46     25     25     22     61
D63V3, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                            4                             46
  CLUS_2                            4                             25
  CLUS_3                            6                             25
  CLUS_4                            7                             22
  CLUS_5                            6                             61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q11.2) MUTATED        9     11      7
  DEL PEAK 35(14Q11.2) WILD-TYPE     67     71     41
D63V4, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                            9                             67
  CLUS_2                           11                             71
  CLUS_3                            7                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q11.2) MUTATED       24     12     28     10
  DEL PEAK 35(14Q11.2) WILD-TYPE    111    101    143     85
D63V5, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                           24                            111
  CLUS_2                           12                            101
  CLUS_3                           28                            143
  CLUS_4                           10                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q11.2) MUTATED       19     21     23     11
  DEL PEAK 35(14Q11.2) WILD-TYPE    157     82    147     54
D63V6, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                           19                            157
  CLUS_2                           21                             82
  CLUS_3                           23                            147
  CLUS_4                           11                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(14Q11.2) MUTATED       21     17     20     10      4
  DEL PEAK 35(14Q11.2) WILD-TYPE     60    122    111     81     72
D63V7, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                           21                             60
  CLUS_2                           17                            122
  CLUS_3                           20                            111
  CLUS_4                           10                             81
  CLUS_5                            4                             72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q11.2) MUTATED       20     29     23
  DEL PEAK 35(14Q11.2) WILD-TYPE    170    113    163
D63V8, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                           20                            170
  CLUS_2                           29                            113
  CLUS_3                           23                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q11.2) MUTATED       21     22     24
  DEL PEAK 35(14Q11.2) WILD-TYPE    120    167    119
D63V9, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                           21                            120
  CLUS_2                           22                            167
  CLUS_3                           24                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q11.2) MUTATED       21     15     31
  DEL PEAK 35(14Q11.2) WILD-TYPE    150     89    167
D63V10, multiclass
        clus
vv       DEL PEAK 35(14Q11.2) MUTATED DEL PEAK 35(14Q11.2) WILD-TYPE
  CLUS_1                           21                            150
  CLUS_2                           15                             89
  CLUS_3                           31                            167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 36(14Q32.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(14Q32.32) MUTATED       15     28     25      7
  DEL PEAK 36(14Q32.32) WILD-TYPE    188    100    120     39
D64V1, multiclass
        clus
vv       DEL PEAK 36(14Q32.32) MUTATED DEL PEAK 36(14Q32.32) WILD-TYPE
  CLUS_1                            15                             188
  CLUS_2                            28                             100
  CLUS_3                            25                             120
  CLUS_4                             7                              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(14Q32.32) MUTATED        3     14      5     17     32      4
  DEL PEAK 36(14Q32.32) WILD-TYPE     81     73     98     72     46     71
                                 vv
clus                              CLUS_7
  DEL PEAK 36(14Q32.32) MUTATED        0
  DEL PEAK 36(14Q32.32) WILD-TYPE      6
D64V2, multiclass
        clus
vv       DEL PEAK 36(14Q32.32) MUTATED DEL PEAK 36(14Q32.32) WILD-TYPE
  CLUS_1                             3                              81
  CLUS_2                            14                              73
  CLUS_3                             5                              98
  CLUS_4                            17                              72
  CLUS_5                            32                              46
  CLUS_6                             4                              71
  CLUS_7                             0                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(14Q32.32) MUTATED        7      9      6      2      6
  DEL PEAK 36(14Q32.32) WILD-TYPE     43     20     25     27     61
D64V3, multiclass
        clus
vv       DEL PEAK 36(14Q32.32) MUTATED DEL PEAK 36(14Q32.32) WILD-TYPE
  CLUS_1                             7                              43
  CLUS_2                             9                              20
  CLUS_3                             6                              25
  CLUS_4                             2                              27
  CLUS_5                             6                              61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(14Q32.32) MUTATED       10     15      5
  DEL PEAK 36(14Q32.32) WILD-TYPE     66     67     43
D64V4, multiclass
        clus
vv       DEL PEAK 36(14Q32.32) MUTATED DEL PEAK 36(14Q32.32) WILD-TYPE
  CLUS_1                            10                              66
  CLUS_2                            15                              67
  CLUS_3                             5                              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(14Q32.32) MUTATED       12      7     43     11
  DEL PEAK 36(14Q32.32) WILD-TYPE    123    106    128     84
D64V5, multiclass
        clus
vv       DEL PEAK 36(14Q32.32) MUTATED DEL PEAK 36(14Q32.32) WILD-TYPE
  CLUS_1                            12                             123
  CLUS_2                             7                             106
  CLUS_3                            43                             128
  CLUS_4                            11                              84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(14Q32.32) MUTATED       21     15      9     28
  DEL PEAK 36(14Q32.32) WILD-TYPE    155     88    161     37
D64V6, multiclass
        clus
vv       DEL PEAK 36(14Q32.32) MUTATED DEL PEAK 36(14Q32.32) WILD-TYPE
  CLUS_1                            21                             155
  CLUS_2                            15                              88
  CLUS_3                             9                             161
  CLUS_4                            28                              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(14Q32.32) MUTATED       11      7     42      5      9
  DEL PEAK 36(14Q32.32) WILD-TYPE     70    132     89     86     67
D64V7, multiclass
        clus
vv       DEL PEAK 36(14Q32.32) MUTATED DEL PEAK 36(14Q32.32) WILD-TYPE
  CLUS_1                            11                              70
  CLUS_2                             7                             132
  CLUS_3                            42                              89
  CLUS_4                             5                              86
  CLUS_5                             9                              67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(14Q32.32) MUTATED       21     16     37
  DEL PEAK 36(14Q32.32) WILD-TYPE    169    126    149
D64V8, multiclass
        clus
vv       DEL PEAK 36(14Q32.32) MUTATED DEL PEAK 36(14Q32.32) WILD-TYPE
  CLUS_1                            21                             169
  CLUS_2                            16                             126
  CLUS_3                            37                             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(14Q32.32) MUTATED       19     23     25
  DEL PEAK 36(14Q32.32) WILD-TYPE    122    166    118
D64V9, multiclass
        clus
vv       DEL PEAK 36(14Q32.32) MUTATED DEL PEAK 36(14Q32.32) WILD-TYPE
  CLUS_1                            19                             122
  CLUS_2                            23                             166
  CLUS_3                            25                             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(14Q32.32) MUTATED       20     11     36
  DEL PEAK 36(14Q32.32) WILD-TYPE    151     93    162
D64V10, multiclass
        clus
vv       DEL PEAK 36(14Q32.32) MUTATED DEL PEAK 36(14Q32.32) WILD-TYPE
  CLUS_1                            20                             151
  CLUS_2                            11                              93
  CLUS_3                            36                             162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 37(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q15.1) MUTATED       66     26     11     21
  DEL PEAK 37(15Q15.1) WILD-TYPE    137    102    134     25
D65V1, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           66                            137
  CLUS_2                           26                            102
  CLUS_3                           11                            134
  CLUS_4                           21                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(15Q15.1) MUTATED       14     23     19     30     14     22
  DEL PEAK 37(15Q15.1) WILD-TYPE     70     64     84     59     64     53
                                vv
clus                             CLUS_7
  DEL PEAK 37(15Q15.1) MUTATED        2
  DEL PEAK 37(15Q15.1) WILD-TYPE      4
D65V2, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           14                             70
  CLUS_2                           23                             64
  CLUS_3                           19                             84
  CLUS_4                           30                             59
  CLUS_5                           14                             64
  CLUS_6                           22                             53
  CLUS_7                            2                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(15Q15.1) MUTATED       14      5     10      7     21
  DEL PEAK 37(15Q15.1) WILD-TYPE     36     24     21     22     46
D65V3, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           14                             36
  CLUS_2                            5                             24
  CLUS_3                           10                             21
  CLUS_4                            7                             22
  CLUS_5                           21                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(15Q15.1) MUTATED       17     26     14
  DEL PEAK 37(15Q15.1) WILD-TYPE     59     56     34
D65V4, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           17                             59
  CLUS_2                           26                             56
  CLUS_3                           14                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q15.1) MUTATED       39     16     42     27
  DEL PEAK 37(15Q15.1) WILD-TYPE     96     97    129     68
D65V5, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           39                             96
  CLUS_2                           16                             97
  CLUS_3                           42                            129
  CLUS_4                           27                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q15.1) MUTATED       44     34     35     11
  DEL PEAK 37(15Q15.1) WILD-TYPE    132     69    135     54
D65V6, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           44                            132
  CLUS_2                           34                             69
  CLUS_3                           35                            135
  CLUS_4                           11                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(15Q15.1) MUTATED       20     32     32     18     22
  DEL PEAK 37(15Q15.1) WILD-TYPE     61    107     99     73     54
D65V7, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           20                             61
  CLUS_2                           32                            107
  CLUS_3                           32                             99
  CLUS_4                           18                             73
  CLUS_5                           22                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(15Q15.1) MUTATED       48     36     40
  DEL PEAK 37(15Q15.1) WILD-TYPE    142    106    146
D65V8, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           48                            142
  CLUS_2                           36                            106
  CLUS_3                           40                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(15Q15.1) MUTATED       39     44     31
  DEL PEAK 37(15Q15.1) WILD-TYPE    102    145    112
D65V9, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           39                            102
  CLUS_2                           44                            145
  CLUS_3                           31                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(15Q15.1) MUTATED       42     26     46
  DEL PEAK 37(15Q15.1) WILD-TYPE    129     78    152
D65V10, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           42                            129
  CLUS_2                           26                             78
  CLUS_3                           46                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 38(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       27     36     20     15
  DEL PEAK 38(16Q23.1) WILD-TYPE    176     92    125     31
D66V1, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           27                            176
  CLUS_2                           36                             92
  CLUS_3                           20                            125
  CLUS_4                           15                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(16Q23.1) MUTATED        5     17     10     30     27      8
  DEL PEAK 38(16Q23.1) WILD-TYPE     79     70     93     59     51     67
                                vv
clus                             CLUS_7
  DEL PEAK 38(16Q23.1) MUTATED        1
  DEL PEAK 38(16Q23.1) WILD-TYPE      5
D66V2, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                            5                             79
  CLUS_2                           17                             70
  CLUS_3                           10                             93
  CLUS_4                           30                             59
  CLUS_5                           27                             51
  CLUS_6                            8                             67
  CLUS_7                            1                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(16Q23.1) MUTATED        7      7      6      6     11
  DEL PEAK 38(16Q23.1) WILD-TYPE     43     22     25     23     56
D66V3, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                            7                             43
  CLUS_2                            7                             22
  CLUS_3                            6                             25
  CLUS_4                            6                             23
  CLUS_5                           11                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       11     18      8
  DEL PEAK 38(16Q23.1) WILD-TYPE     65     64     40
D66V4, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           11                             65
  CLUS_2                           18                             64
  CLUS_3                            8                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       17      8     60     13
  DEL PEAK 38(16Q23.1) WILD-TYPE    118    105    111     82
D66V5, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           17                            118
  CLUS_2                            8                            105
  CLUS_3                           60                            111
  CLUS_4                           13                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       24     31     17     26
  DEL PEAK 38(16Q23.1) WILD-TYPE    152     72    153     39
D66V6, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           24                            152
  CLUS_2                           31                             72
  CLUS_3                           17                            153
  CLUS_4                           26                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(16Q23.1) MUTATED       14     13     46     12     12
  DEL PEAK 38(16Q23.1) WILD-TYPE     67    126     85     79     64
D66V7, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           14                             67
  CLUS_2                           13                            126
  CLUS_3                           46                             85
  CLUS_4                           12                             79
  CLUS_5                           12                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       25     30     42
  DEL PEAK 38(16Q23.1) WILD-TYPE    165    112    144
D66V8, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           25                            165
  CLUS_2                           30                            112
  CLUS_3                           42                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       23     32     33
  DEL PEAK 38(16Q23.1) WILD-TYPE    118    157    110
D66V9, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           23                            118
  CLUS_2                           32                            157
  CLUS_3                           33                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       23     12     53
  DEL PEAK 38(16Q23.1) WILD-TYPE    148     92    145
D66V10, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           23                            148
  CLUS_2                           12                             92
  CLUS_3                           53                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 39(16Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.3) MUTATED       30     37     22     16
  DEL PEAK 39(16Q23.3) WILD-TYPE    173     91    123     30
D67V1, multiclass
        clus
vv       DEL PEAK 39(16Q23.3) MUTATED DEL PEAK 39(16Q23.3) WILD-TYPE
  CLUS_1                           30                            173
  CLUS_2                           37                             91
  CLUS_3                           22                            123
  CLUS_4                           16                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(16Q23.3) MUTATED        6     16     16     32     27      7
  DEL PEAK 39(16Q23.3) WILD-TYPE     78     71     87     57     51     68
                                vv
clus                             CLUS_7
  DEL PEAK 39(16Q23.3) MUTATED        1
  DEL PEAK 39(16Q23.3) WILD-TYPE      5
D67V2, multiclass
        clus
vv       DEL PEAK 39(16Q23.3) MUTATED DEL PEAK 39(16Q23.3) WILD-TYPE
  CLUS_1                            6                             78
  CLUS_2                           16                             71
  CLUS_3                           16                             87
  CLUS_4                           32                             57
  CLUS_5                           27                             51
  CLUS_6                            7                             68
  CLUS_7                            1                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(16Q23.3) MUTATED        7      9      8      6     13
  DEL PEAK 39(16Q23.3) WILD-TYPE     43     20     23     23     54
D67V3, multiclass
        clus
vv       DEL PEAK 39(16Q23.3) MUTATED DEL PEAK 39(16Q23.3) WILD-TYPE
  CLUS_1                            7                             43
  CLUS_2                            9                             20
  CLUS_3                            8                             23
  CLUS_4                            6                             23
  CLUS_5                           13                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(16Q23.3) MUTATED       12     22      9
  DEL PEAK 39(16Q23.3) WILD-TYPE     64     60     39
D67V4, multiclass
        clus
vv       DEL PEAK 39(16Q23.3) MUTATED DEL PEAK 39(16Q23.3) WILD-TYPE
  CLUS_1                           12                             64
  CLUS_2                           22                             60
  CLUS_3                            9                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.3) MUTATED       17     13     60     14
  DEL PEAK 39(16Q23.3) WILD-TYPE    118    100    111     81
D67V5, multiclass
        clus
vv       DEL PEAK 39(16Q23.3) MUTATED DEL PEAK 39(16Q23.3) WILD-TYPE
  CLUS_1                           17                            118
  CLUS_2                           13                            100
  CLUS_3                           60                            111
  CLUS_4                           14                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.3) MUTATED       27     31     19     27
  DEL PEAK 39(16Q23.3) WILD-TYPE    149     72    151     38
D67V6, multiclass
        clus
vv       DEL PEAK 39(16Q23.3) MUTATED DEL PEAK 39(16Q23.3) WILD-TYPE
  CLUS_1                           27                            149
  CLUS_2                           31                             72
  CLUS_3                           19                            151
  CLUS_4                           27                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(16Q23.3) MUTATED       15     16     47     13     13
  DEL PEAK 39(16Q23.3) WILD-TYPE     66    123     84     78     63
D67V7, multiclass
        clus
vv       DEL PEAK 39(16Q23.3) MUTATED DEL PEAK 39(16Q23.3) WILD-TYPE
  CLUS_1                           15                             66
  CLUS_2                           16                            123
  CLUS_3                           47                             84
  CLUS_4                           13                             78
  CLUS_5                           13                             63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(16Q23.3) MUTATED       31     28     45
  DEL PEAK 39(16Q23.3) WILD-TYPE    159    114    141
D67V8, multiclass
        clus
vv       DEL PEAK 39(16Q23.3) MUTATED DEL PEAK 39(16Q23.3) WILD-TYPE
  CLUS_1                           31                            159
  CLUS_2                           28                            114
  CLUS_3                           45                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(16Q23.3) MUTATED       25     35     34
  DEL PEAK 39(16Q23.3) WILD-TYPE    116    154    109
D67V9, multiclass
        clus
vv       DEL PEAK 39(16Q23.3) MUTATED DEL PEAK 39(16Q23.3) WILD-TYPE
  CLUS_1                           25                            116
  CLUS_2                           35                            154
  CLUS_3                           34                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(16Q23.3) MUTATED       29     14     51
  DEL PEAK 39(16Q23.3) WILD-TYPE    142     90    147
D67V10, multiclass
        clus
vv       DEL PEAK 39(16Q23.3) MUTATED DEL PEAK 39(16Q23.3) WILD-TYPE
  CLUS_1                           29                            142
  CLUS_2                           14                             90
  CLUS_3                           51                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 40(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P11.2) MUTATED       49     36      5      9
  DEL PEAK 40(17P11.2) WILD-TYPE    154     92    140     37
D68V1, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           49                            154
  CLUS_2                           36                             92
  CLUS_3                            5                            140
  CLUS_4                            9                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17P11.2) MUTATED        9     24     11     25     13     14
  DEL PEAK 40(17P11.2) WILD-TYPE     75     63     92     64     65     61
                                vv
clus                             CLUS_7
  DEL PEAK 40(17P11.2) MUTATED        3
  DEL PEAK 40(17P11.2) WILD-TYPE      3
D68V2, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                            9                             75
  CLUS_2                           24                             63
  CLUS_3                           11                             92
  CLUS_4                           25                             64
  CLUS_5                           13                             65
  CLUS_6                           14                             61
  CLUS_7                            3                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17P11.2) MUTATED       10      7      6      4     11
  DEL PEAK 40(17P11.2) WILD-TYPE     40     22     25     25     56
D68V3, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           10                             40
  CLUS_2                            7                             22
  CLUS_3                            6                             25
  CLUS_4                            4                             25
  CLUS_5                           11                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P11.2) MUTATED       14     16      8
  DEL PEAK 40(17P11.2) WILD-TYPE     62     66     40
D68V4, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           14                             62
  CLUS_2                           16                             66
  CLUS_3                            8                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P11.2) MUTATED       32     15     34     16
  DEL PEAK 40(17P11.2) WILD-TYPE    103     98    137     79
D68V5, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           32                            103
  CLUS_2                           15                             98
  CLUS_3                           34                            137
  CLUS_4                           16                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P11.2) MUTATED       33     28     26     10
  DEL PEAK 40(17P11.2) WILD-TYPE    143     75    144     55
D68V6, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           33                            143
  CLUS_2                           28                             75
  CLUS_3                           26                            144
  CLUS_4                           10                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17P11.2) MUTATED       21     25     27     10     15
  DEL PEAK 40(17P11.2) WILD-TYPE     60    114    104     81     61
D68V7, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           21                             60
  CLUS_2                           25                            114
  CLUS_3                           27                            104
  CLUS_4                           10                             81
  CLUS_5                           15                             61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P11.2) MUTATED       33     35     30
  DEL PEAK 40(17P11.2) WILD-TYPE    157    107    156
D68V8, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           33                            157
  CLUS_2                           35                            107
  CLUS_3                           30                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P11.2) MUTATED       29     38     26
  DEL PEAK 40(17P11.2) WILD-TYPE    112    151    117
D68V9, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           29                            112
  CLUS_2                           38                            151
  CLUS_3                           26                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P11.2) MUTATED       32     21     40
  DEL PEAK 40(17P11.2) WILD-TYPE    139     83    158
D68V10, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           32                            139
  CLUS_2                           21                             83
  CLUS_3                           40                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 41(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q25.3) MUTATED       31     25     10      5
  DEL PEAK 41(17Q25.3) WILD-TYPE    172    103    135     41
D69V1, multiclass
        clus
vv       DEL PEAK 41(17Q25.3) MUTATED DEL PEAK 41(17Q25.3) WILD-TYPE
  CLUS_1                           31                            172
  CLUS_2                           25                            103
  CLUS_3                           10                            135
  CLUS_4                            5                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(17Q25.3) MUTATED        3     10      7     22     19      8
  DEL PEAK 41(17Q25.3) WILD-TYPE     81     77     96     67     59     67
                                vv
clus                             CLUS_7
  DEL PEAK 41(17Q25.3) MUTATED        2
  DEL PEAK 41(17Q25.3) WILD-TYPE      4
D69V2, multiclass
        clus
vv       DEL PEAK 41(17Q25.3) MUTATED DEL PEAK 41(17Q25.3) WILD-TYPE
  CLUS_1                            3                             81
  CLUS_2                           10                             77
  CLUS_3                            7                             96
  CLUS_4                           22                             67
  CLUS_5                           19                             59
  CLUS_6                            8                             67
  CLUS_7                            2                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17Q25.3) MUTATED        2      6      5      2      5
  DEL PEAK 41(17Q25.3) WILD-TYPE     48     23     26     27     62
D69V3, multiclass
        clus
vv       DEL PEAK 41(17Q25.3) MUTATED DEL PEAK 41(17Q25.3) WILD-TYPE
  CLUS_1                            2                             48
  CLUS_2                            6                             23
  CLUS_3                            5                             26
  CLUS_4                            2                             27
  CLUS_5                            5                             62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q25.3) MUTATED        8      9      3
  DEL PEAK 41(17Q25.3) WILD-TYPE     68     73     45
D69V4, multiclass
        clus
vv       DEL PEAK 41(17Q25.3) MUTATED DEL PEAK 41(17Q25.3) WILD-TYPE
  CLUS_1                            8                             68
  CLUS_2                            9                             73
  CLUS_3                            3                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q25.3) MUTATED       23      8     32      6
  DEL PEAK 41(17Q25.3) WILD-TYPE    112    105    139     89
D69V5, multiclass
        clus
vv       DEL PEAK 41(17Q25.3) MUTATED DEL PEAK 41(17Q25.3) WILD-TYPE
  CLUS_1                           23                            112
  CLUS_2                            8                            105
  CLUS_3                           32                            139
  CLUS_4                            6                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q25.3) MUTATED       18     12     24     15
  DEL PEAK 41(17Q25.3) WILD-TYPE    158     91    146     50
D69V6, multiclass
        clus
vv       DEL PEAK 41(17Q25.3) MUTATED DEL PEAK 41(17Q25.3) WILD-TYPE
  CLUS_1                           18                            158
  CLUS_2                           12                             91
  CLUS_3                           24                            146
  CLUS_4                           15                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17Q25.3) MUTATED       13     11     30     10      6
  DEL PEAK 41(17Q25.3) WILD-TYPE     68    128    101     81     70
D69V7, multiclass
        clus
vv       DEL PEAK 41(17Q25.3) MUTATED DEL PEAK 41(17Q25.3) WILD-TYPE
  CLUS_1                           13                             68
  CLUS_2                           11                            128
  CLUS_3                           30                            101
  CLUS_4                           10                             81
  CLUS_5                            6                             70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q25.3) MUTATED       17     25     28
  DEL PEAK 41(17Q25.3) WILD-TYPE    173    117    158
D69V8, multiclass
        clus
vv       DEL PEAK 41(17Q25.3) MUTATED DEL PEAK 41(17Q25.3) WILD-TYPE
  CLUS_1                           17                            173
  CLUS_2                           25                            117
  CLUS_3                           28                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q25.3) MUTATED       11     31     25
  DEL PEAK 41(17Q25.3) WILD-TYPE    130    158    118
D69V9, multiclass
        clus
vv       DEL PEAK 41(17Q25.3) MUTATED DEL PEAK 41(17Q25.3) WILD-TYPE
  CLUS_1                           11                            130
  CLUS_2                           31                            158
  CLUS_3                           25                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q25.3) MUTATED       14     14     39
  DEL PEAK 41(17Q25.3) WILD-TYPE    157     90    159
D69V10, multiclass
        clus
vv       DEL PEAK 41(17Q25.3) MUTATED DEL PEAK 41(17Q25.3) WILD-TYPE
  CLUS_1                           14                            157
  CLUS_2                           14                             90
  CLUS_3                           39                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 42(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q23) MUTATED      155     78     28     27
  DEL PEAK 42(18Q23) WILD-TYPE     48     50    117     19
D70V1, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                        155                           48
  CLUS_2                         78                           50
  CLUS_3                         28                          117
  CLUS_4                         27                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 42(18Q23) MUTATED       44     63     44     67      9     58      3
  DEL PEAK 42(18Q23) WILD-TYPE     40     24     59     22     69     17      3
D70V2, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         44                           40
  CLUS_2                         63                           24
  CLUS_3                         44                           59
  CLUS_4                         67                           22
  CLUS_5                          9                           69
  CLUS_6                         58                           17
  CLUS_7                          3                            3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q23) MUTATED       33     13     22     15     43
  DEL PEAK 42(18Q23) WILD-TYPE     17     16      9     14     24
D70V3, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         33                           17
  CLUS_2                         13                           16
  CLUS_3                         22                            9
  CLUS_4                         15                           14
  CLUS_5                         43                           24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q23) MUTATED       51     50     25
  DEL PEAK 42(18Q23) WILD-TYPE     25     32     23
D70V4, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         51                           25
  CLUS_2                         50                           32
  CLUS_3                         25                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q23) MUTATED       94     56     73     61
  DEL PEAK 42(18Q23) WILD-TYPE     41     57     98     34
D70V5, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         94                           41
  CLUS_2                         56                           57
  CLUS_3                         73                           98
  CLUS_4                         61                           34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q23) MUTATED      110     70     95      9
  DEL PEAK 42(18Q23) WILD-TYPE     66     33     75     56
D70V6, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                        110                           66
  CLUS_2                         70                           33
  CLUS_3                         95                           75
  CLUS_4                          9                           56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q23) MUTATED       58     79     48     54     47
  DEL PEAK 42(18Q23) WILD-TYPE     23     60     83     37     29
D70V7, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         58                           23
  CLUS_2                         79                           60
  CLUS_3                         48                           83
  CLUS_4                         54                           37
  CLUS_5                         47                           29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q23) MUTATED      119     92     75
  DEL PEAK 42(18Q23) WILD-TYPE     71     50    111
D70V8, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                        119                           71
  CLUS_2                         92                           50
  CLUS_3                         75                          111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q23) MUTATED       86    108     69
  DEL PEAK 42(18Q23) WILD-TYPE     55     81     74
D70V9, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         86                           55
  CLUS_2                        108                           81
  CLUS_3                         69                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q23) MUTATED      106     62     95
  DEL PEAK 42(18Q23) WILD-TYPE     65     42    103
D70V10, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                        106                           65
  CLUS_2                         62                           42
  CLUS_3                         95                          103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 43(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19P13.3) MUTATED       96     43     18     18
  DEL PEAK 43(19P13.3) WILD-TYPE    107     85    127     28
D71V1, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           96                            107
  CLUS_2                           43                             85
  CLUS_3                           18                            127
  CLUS_4                           18                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(19P13.3) MUTATED       18     31     34     40     14     38
  DEL PEAK 43(19P13.3) WILD-TYPE     66     56     69     49     64     37
                                vv
clus                             CLUS_7
  DEL PEAK 43(19P13.3) MUTATED        0
  DEL PEAK 43(19P13.3) WILD-TYPE      6
D71V2, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           18                             66
  CLUS_2                           31                             56
  CLUS_3                           34                             69
  CLUS_4                           40                             49
  CLUS_5                           14                             64
  CLUS_6                           38                             37
  CLUS_7                            0                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(19P13.3) MUTATED       20      9     11     15     24
  DEL PEAK 43(19P13.3) WILD-TYPE     30     20     20     14     43
D71V3, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           20                             30
  CLUS_2                            9                             20
  CLUS_3                           11                             20
  CLUS_4                           15                             14
  CLUS_5                           24                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19P13.3) MUTATED       34     28     17
  DEL PEAK 43(19P13.3) WILD-TYPE     42     54     31
D71V4, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           34                             42
  CLUS_2                           28                             54
  CLUS_3                           17                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19P13.3) MUTATED       61     29     45     38
  DEL PEAK 43(19P13.3) WILD-TYPE     74     84    126     57
D71V5, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           61                             74
  CLUS_2                           29                             84
  CLUS_3                           45                            126
  CLUS_4                           38                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19P13.3) MUTATED       71     39     54      9
  DEL PEAK 43(19P13.3) WILD-TYPE    105     64    116     56
D71V6, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           71                            105
  CLUS_2                           39                             64
  CLUS_3                           54                            116
  CLUS_4                            9                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(19P13.3) MUTATED       35     50     31     30     26
  DEL PEAK 43(19P13.3) WILD-TYPE     46     89    100     61     50
D71V7, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           35                             46
  CLUS_2                           50                             89
  CLUS_3                           31                            100
  CLUS_4                           30                             61
  CLUS_5                           26                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19P13.3) MUTATED       72     59     41
  DEL PEAK 43(19P13.3) WILD-TYPE    118     83    145
D71V8, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           72                            118
  CLUS_2                           59                             83
  CLUS_3                           41                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19P13.3) MUTATED       52     59     46
  DEL PEAK 43(19P13.3) WILD-TYPE     89    130     97
D71V9, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           52                             89
  CLUS_2                           59                            130
  CLUS_3                           46                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19P13.3) MUTATED       64     35     58
  DEL PEAK 43(19P13.3) WILD-TYPE    107     69    140
D71V10, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           64                            107
  CLUS_2                           35                             69
  CLUS_3                           58                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 44(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19Q13.43) MUTATED       54     33      2      8
  DEL PEAK 44(19Q13.43) WILD-TYPE    149     95    143     38
D72V1, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            54                             149
  CLUS_2                            33                              95
  CLUS_3                             2                             143
  CLUS_4                             8                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(19Q13.43) MUTATED        8     21     11     29      5     22
  DEL PEAK 44(19Q13.43) WILD-TYPE     76     66     92     60     73     53
                                 vv
clus                              CLUS_7
  DEL PEAK 44(19Q13.43) MUTATED        1
  DEL PEAK 44(19Q13.43) WILD-TYPE      5
D72V2, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                             8                              76
  CLUS_2                            21                              66
  CLUS_3                            11                              92
  CLUS_4                            29                              60
  CLUS_5                             5                              73
  CLUS_6                            22                              53
  CLUS_7                             1                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19Q13.43) MUTATED       12      6     10      8      9
  DEL PEAK 44(19Q13.43) WILD-TYPE     38     23     21     21     58
D72V3, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            12                              38
  CLUS_2                             6                              23
  CLUS_3                            10                              21
  CLUS_4                             8                              21
  CLUS_5                             9                              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19Q13.43) MUTATED       16     16     13
  DEL PEAK 44(19Q13.43) WILD-TYPE     60     66     35
D72V4, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            16                              60
  CLUS_2                            16                              66
  CLUS_3                            13                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19Q13.43) MUTATED       30     15     32     18
  DEL PEAK 44(19Q13.43) WILD-TYPE    105     98    139     77
D72V5, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            30                             105
  CLUS_2                            15                              98
  CLUS_3                            32                             139
  CLUS_4                            18                              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19Q13.43) MUTATED       34     34     23      4
  DEL PEAK 44(19Q13.43) WILD-TYPE    142     69    147     61
D72V6, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            34                             142
  CLUS_2                            34                              69
  CLUS_3                            23                             147
  CLUS_4                             4                              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19Q13.43) MUTATED       25     25     20     15     10
  DEL PEAK 44(19Q13.43) WILD-TYPE     56    114    111     76     66
D72V7, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            25                              56
  CLUS_2                            25                             114
  CLUS_3                            20                             111
  CLUS_4                            15                              76
  CLUS_5                            10                              66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19Q13.43) MUTATED       37     33     25
  DEL PEAK 44(19Q13.43) WILD-TYPE    153    109    161
D72V8, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            37                             153
  CLUS_2                            33                             109
  CLUS_3                            25                             161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19Q13.43) MUTATED       26     27     32
  DEL PEAK 44(19Q13.43) WILD-TYPE    115    162    111
D72V9, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            26                             115
  CLUS_2                            27                             162
  CLUS_3                            32                             111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19Q13.43) MUTATED       32     15     38
  DEL PEAK 44(19Q13.43) WILD-TYPE    139     89    160
D72V10, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            32                             139
  CLUS_2                            15                              89
  CLUS_3                            38                             160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 45(21Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q22.3) MUTATED      113     59     11     25
  DEL PEAK 45(21Q22.3) WILD-TYPE     90     69    134     21
D73V1, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                          113                             90
  CLUS_2                           59                             69
  CLUS_3                           11                            134
  CLUS_4                           25                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(21Q22.3) MUTATED       24     39     34     50     12     47
  DEL PEAK 45(21Q22.3) WILD-TYPE     60     48     69     39     66     28
                                vv
clus                             CLUS_7
  DEL PEAK 45(21Q22.3) MUTATED        2
  DEL PEAK 45(21Q22.3) WILD-TYPE      4
D73V2, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           24                             60
  CLUS_2                           39                             48
  CLUS_3                           34                             69
  CLUS_4                           50                             39
  CLUS_5                           12                             66
  CLUS_6                           47                             28
  CLUS_7                            2                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(21Q22.3) MUTATED       22     10     15     11     33
  DEL PEAK 45(21Q22.3) WILD-TYPE     28     19     16     18     34
D73V3, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           22                             28
  CLUS_2                           10                             19
  CLUS_3                           15                             16
  CLUS_4                           11                             18
  CLUS_5                           33                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q22.3) MUTATED       32     39     20
  DEL PEAK 45(21Q22.3) WILD-TYPE     44     43     28
D73V4, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           32                             44
  CLUS_2                           39                             43
  CLUS_3                           20                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q22.3) MUTATED       65     39     59     42
  DEL PEAK 45(21Q22.3) WILD-TYPE     70     74    112     53
D73V5, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           65                             70
  CLUS_2                           39                             74
  CLUS_3                           59                            112
  CLUS_4                           42                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q22.3) MUTATED       89     46     59     11
  DEL PEAK 45(21Q22.3) WILD-TYPE     87     57    111     54
D73V6, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           89                             87
  CLUS_2                           46                             57
  CLUS_3                           59                            111
  CLUS_4                           11                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(21Q22.3) MUTATED       45     58     35     32     37
  DEL PEAK 45(21Q22.3) WILD-TYPE     36     81     96     59     39
D73V7, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           45                             36
  CLUS_2                           58                             81
  CLUS_3                           35                             96
  CLUS_4                           32                             59
  CLUS_5                           37                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q22.3) MUTATED       88     68     51
  DEL PEAK 45(21Q22.3) WILD-TYPE    102     74    135
D73V8, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           88                            102
  CLUS_2                           68                             74
  CLUS_3                           51                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q22.3) MUTATED       67     67     59
  DEL PEAK 45(21Q22.3) WILD-TYPE     74    122     84
D73V9, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           67                             74
  CLUS_2                           67                            122
  CLUS_3                           59                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q22.3) MUTATED       79     38     76
  DEL PEAK 45(21Q22.3) WILD-TYPE     92     66    122
D73V10, multiclass
        clus
vv       DEL PEAK 45(21Q22.3) MUTATED DEL PEAK 45(21Q22.3) WILD-TYPE
  CLUS_1                           79                             92
  CLUS_2                           38                             66
  CLUS_3                           76                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 46(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(XP22.2) MUTATED       85     46     16     10
  DEL PEAK 46(XP22.2) WILD-TYPE    118     82    129     36
D74V1, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          85                           118
  CLUS_2                          46                            82
  CLUS_3                          16                           129
  CLUS_4                          10                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(XP22.2) MUTATED       14     28     20     50     17     27
  DEL PEAK 46(XP22.2) WILD-TYPE     70     59     83     39     61     48
                               vv
clus                            CLUS_7
  DEL PEAK 46(XP22.2) MUTATED        1
  DEL PEAK 46(XP22.2) WILD-TYPE      5
D74V2, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          14                            70
  CLUS_2                          28                            59
  CLUS_3                          20                            83
  CLUS_4                          50                            39
  CLUS_5                          17                            61
  CLUS_6                          27                            48
  CLUS_7                           1                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(XP22.2) MUTATED       13      9     12      9     26
  DEL PEAK 46(XP22.2) WILD-TYPE     37     20     19     20     41
D74V3, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          13                            37
  CLUS_2                           9                            20
  CLUS_3                          12                            19
  CLUS_4                           9                            20
  CLUS_5                          26                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       19     39     11
  DEL PEAK 46(XP22.2) WILD-TYPE     57     43     37
D74V4, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          19                            57
  CLUS_2                          39                            43
  CLUS_3                          11                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(XP22.2) MUTATED       41     28     55     32
  DEL PEAK 46(XP22.2) WILD-TYPE     94     85    116     63
D74V5, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          41                            94
  CLUS_2                          28                            85
  CLUS_3                          55                           116
  CLUS_4                          32                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(XP22.2) MUTATED       60     40     38     18
  DEL PEAK 46(XP22.2) WILD-TYPE    116     63    132     47
D74V6, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          60                           116
  CLUS_2                          40                            63
  CLUS_3                          38                           132
  CLUS_4                          18                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(XP22.2) MUTATED       35     29     44     24     22
  DEL PEAK 46(XP22.2) WILD-TYPE     46    110     87     67     54
D74V7, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          35                            46
  CLUS_2                          29                           110
  CLUS_3                          44                            87
  CLUS_4                          24                            67
  CLUS_5                          22                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       60     48     46
  DEL PEAK 46(XP22.2) WILD-TYPE    130     94    140
D74V8, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          60                           130
  CLUS_2                          48                            94
  CLUS_3                          46                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       41     53     44
  DEL PEAK 46(XP22.2) WILD-TYPE    100    136     99
D74V9, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          41                           100
  CLUS_2                          53                           136
  CLUS_3                          44                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       50     32     56
  DEL PEAK 46(XP22.2) WILD-TYPE    121     72    142
D74V10, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          50                           121
  CLUS_2                          32                            72
  CLUS_3                          56                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = DEL PEAK 47(XP21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(XP21.3) MUTATED       90     43     17      9
  DEL PEAK 47(XP21.3) WILD-TYPE    113     85    128     37
D75V1, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          90                           113
  CLUS_2                          43                            85
  CLUS_3                          17                           128
  CLUS_4                           9                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(XP21.3) MUTATED       16     30     24     44     15     29
  DEL PEAK 47(XP21.3) WILD-TYPE     68     57     79     45     63     46
                               vv
clus                            CLUS_7
  DEL PEAK 47(XP21.3) MUTATED        1
  DEL PEAK 47(XP21.3) WILD-TYPE      5
D75V2, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          16                            68
  CLUS_2                          30                            57
  CLUS_3                          24                            79
  CLUS_4                          44                            45
  CLUS_5                          15                            63
  CLUS_6                          29                            46
  CLUS_7                           1                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(XP21.3) MUTATED       15      8     11     11     26
  DEL PEAK 47(XP21.3) WILD-TYPE     35     21     20     18     41
D75V3, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          15                            35
  CLUS_2                           8                            21
  CLUS_3                          11                            20
  CLUS_4                          11                            18
  CLUS_5                          26                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(XP21.3) MUTATED       23     36     12
  DEL PEAK 47(XP21.3) WILD-TYPE     53     46     36
D75V4, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          23                            53
  CLUS_2                          36                            46
  CLUS_3                          12                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(XP21.3) MUTATED       40     33     51     33
  DEL PEAK 47(XP21.3) WILD-TYPE     95     80    120     62
D75V5, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          40                            95
  CLUS_2                          33                            80
  CLUS_3                          51                           120
  CLUS_4                          33                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(XP21.3) MUTATED       62     39     40     16
  DEL PEAK 47(XP21.3) WILD-TYPE    114     64    130     49
D75V6, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          62                           114
  CLUS_2                          39                            64
  CLUS_3                          40                           130
  CLUS_4                          16                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(XP21.3) MUTATED       34     36     38     25     23
  DEL PEAK 47(XP21.3) WILD-TYPE     47    103     93     66     53
D75V7, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          34                            47
  CLUS_2                          36                           103
  CLUS_3                          38                            93
  CLUS_4                          25                            66
  CLUS_5                          23                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(XP21.3) MUTATED       63     48     45
  DEL PEAK 47(XP21.3) WILD-TYPE    127     94    141
D75V8, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          63                           127
  CLUS_2                          48                            94
  CLUS_3                          45                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(XP21.3) MUTATED       41     53     46
  DEL PEAK 47(XP21.3) WILD-TYPE    100    136     97
D75V9, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          41                           100
  CLUS_2                          53                           136
  CLUS_3                          46                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(XP21.3) MUTATED       56     31     53
  DEL PEAK 47(XP21.3) WILD-TYPE    115     73    145
D75V10, multiclass
        clus
vv       DEL PEAK 47(XP21.3) MUTATED DEL PEAK 47(XP21.3) WILD-TYPE
  CLUS_1                          56                           115
  CLUS_2                          31                            73
  CLUS_3                          53                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = DEL PEAK 48(XQ21.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(XQ21.33) MUTATED       39     30      8      3
  DEL PEAK 48(XQ21.33) WILD-TYPE    164     98    137     43
D76V1, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                           39                            164
  CLUS_2                           30                             98
  CLUS_3                            8                            137
  CLUS_4                            3                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(XQ21.33) MUTATED        4     16      5     30     11     13
  DEL PEAK 48(XQ21.33) WILD-TYPE     80     71     98     59     67     62
                                vv
clus                             CLUS_7
  DEL PEAK 48(XQ21.33) MUTATED        1
  DEL PEAK 48(XQ21.33) WILD-TYPE      5
D76V2, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                            4                             80
  CLUS_2                           16                             71
  CLUS_3                            5                             98
  CLUS_4                           30                             59
  CLUS_5                           11                             67
  CLUS_6                           13                             62
  CLUS_7                            1                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(XQ21.33) MUTATED        5      3      6      4     13
  DEL PEAK 48(XQ21.33) WILD-TYPE     45     26     25     25     54
D76V3, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                            5                             45
  CLUS_2                            3                             26
  CLUS_3                            6                             25
  CLUS_4                            4                             25
  CLUS_5                           13                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(XQ21.33) MUTATED        7     17      7
  DEL PEAK 48(XQ21.33) WILD-TYPE     69     65     41
D76V4, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                            7                             69
  CLUS_2                           17                             65
  CLUS_3                            7                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(XQ21.33) MUTATED       26     12     35      6
  DEL PEAK 48(XQ21.33) WILD-TYPE    109    101    136     89
D76V5, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                           26                            109
  CLUS_2                           12                            101
  CLUS_3                           35                            136
  CLUS_4                            6                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(XQ21.33) MUTATED       17     26     23     13
  DEL PEAK 48(XQ21.33) WILD-TYPE    159     77    147     52
D76V6, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                           17                            159
  CLUS_2                           26                             77
  CLUS_3                           23                            147
  CLUS_4                           13                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(XQ21.33) MUTATED       21     16     26      9      7
  DEL PEAK 48(XQ21.33) WILD-TYPE     60    123    105     82     69
D76V7, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                           21                             60
  CLUS_2                           16                            123
  CLUS_3                           26                            105
  CLUS_4                            9                             82
  CLUS_5                            7                             69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(XQ21.33) MUTATED       18     29     32
  DEL PEAK 48(XQ21.33) WILD-TYPE    172    113    154
D76V8, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                           18                            172
  CLUS_2                           29                            113
  CLUS_3                           32                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(XQ21.33) MUTATED       18     24     27
  DEL PEAK 48(XQ21.33) WILD-TYPE    123    165    116
D76V9, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                           18                            123
  CLUS_2                           24                            165
  CLUS_3                           27                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(XQ21.33) MUTATED       17     19     33
  DEL PEAK 48(XQ21.33) WILD-TYPE    154     85    165
D76V10, multiclass
        clus
vv       DEL PEAK 48(XQ21.33) MUTATED DEL PEAK 48(XQ21.33) WILD-TYPE
  CLUS_1                           17                            154
  CLUS_2                           19                             85
  CLUS_3                           33                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
