Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.txt	gdac.broadinstitute.org_KICH-TP.CopyNumber_Gistic2.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.txt	gdac.broadinstitute.org_KICH-TP.CopyNumber_Gistic2.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	D1V5.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.txt	gdac.broadinstitute.org_KICH-TP.CopyNumber_Gistic2.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	D1V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.txt	gdac.broadinstitute.org_KICH-TP.CopyNumber_Gistic2.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	D1V6.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.txt	gdac.broadinstitute.org_KICH-TP.CopyNumber_Gistic2.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	transformed.cor.cli.txt	processed.events.file	Level_4	txt	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.txt	gdac.broadinstitute.org_KICH-TP.CopyNumber_Gistic2.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	D1V6.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.txt	gdac.broadinstitute.org_KICH-TP.CopyNumber_Gistic2.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	D1V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.txt	gdac.broadinstitute.org_KICH-TP.CopyNumber_Gistic2.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	D1V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.txt	gdac.broadinstitute.org_KICH-TP.CopyNumber_Gistic2.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.txt	gdac.broadinstitute.org_KICH-TP.CopyNumber_Gistic2.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	KICH-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_KICH-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	KICH-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_KICH-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	D1V5.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	KICH-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_KICH-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	D1V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	KICH-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_KICH-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	D1V6.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	KICH-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_KICH-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	transformed.cor.cli.txt	processed.events.file	Level_4	txt	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	KICH-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_KICH-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	D1V6.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	KICH-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_KICH-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	D1V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	KICH-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_KICH-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	D1V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	KICH-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_KICH-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	KICH-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_KICH-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:39	Correlate_molecularSubtype_vs_CopyNumber_Focal_2016012800	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_KICH-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2016012800.0.0	yes
