[1] "ofn"         "-oTKIPAN-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIPAN-TP/22570984/KIPAN-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIPAN-TP/22533781/transformed.cor.cli.txt"

nPatients in clinical file=894, in cluster file=882, common to both=882
[1]  32 882
[1] "AMP PEAK 1(1Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(1Q32.1) MUTATED AMP PEAK 1(1Q32.1) WILD-TYPE 
                          82                          800 
  AMP PEAK 1(1Q32.1) MUTATED AMP PEAK 1(1Q32.1) WILD-TYPE 
                          82                          800 
[1] "AMP PEAK 2(2Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                         136                          746 
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                         136                          746 
[1] "AMP PEAK 3(3Q26.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(3Q26.32) MUTATED AMP PEAK 3(3Q26.32) WILD-TYPE 
                          193                           689 
  AMP PEAK 3(3Q26.32) MUTATED AMP PEAK 3(3Q26.32) WILD-TYPE 
                          193                           689 
[1] "AMP PEAK 4(5Q35.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 4(5Q35.1) MUTATED AMP PEAK 4(5Q35.1) WILD-TYPE 
                         376                          506 
  AMP PEAK 4(5Q35.1) MUTATED AMP PEAK 4(5Q35.1) WILD-TYPE 
                         376                          506 
[1] "AMP PEAK 5(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE 
                         377                          505 
  AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE 
                         377                          505 
[1] "AMP PEAK 6(8Q24.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 6(8Q24.22) MUTATED AMP PEAK 6(8Q24.22) WILD-TYPE 
                          125                           757 
  AMP PEAK 6(8Q24.22) MUTATED AMP PEAK 6(8Q24.22) WILD-TYPE 
                          125                           757 
[1] "AMP PEAK 7(10P14) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 7(10P14) MUTATED AMP PEAK 7(10P14) WILD-TYPE 
                         34                         848 
  AMP PEAK 7(10P14) MUTATED AMP PEAK 7(10P14) WILD-TYPE 
                         34                         848 
[1] "AMP PEAK 8(17Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 8(17Q24.3) MUTATED AMP PEAK 8(17Q24.3) WILD-TYPE 
                          243                           639 
  AMP PEAK 8(17Q24.3) MUTATED AMP PEAK 8(17Q24.3) WILD-TYPE 
                          243                           639 
[1] "AMP PEAK 9(XQ11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 9(XQ11.2) MUTATED AMP PEAK 9(XQ11.2) WILD-TYPE 
                         136                          746 
  AMP PEAK 9(XQ11.2) MUTATED AMP PEAK 9(XQ11.2) WILD-TYPE 
                         136                          746 
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                           209                            673 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                           209                            673 
[1] "DEL PEAK  2(1P31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                          166                           716 
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                          166                           716 
[1] "DEL PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                        116                         766 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                        116                         766 
[1] "DEL PEAK  4(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           75                           807 
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           75                           807 
[1] "DEL PEAK  5(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                          111                           771 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                          111                           771 
[1] "DEL PEAK  6(3P26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE 
                          489                           393 
  DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE 
                          489                           393 
[1] "DEL PEAK  7(3P21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P21.2) MUTATED DEL PEAK  7(3P21.2) WILD-TYPE 
                          503                           379 
  DEL PEAK  7(3P21.2) MUTATED DEL PEAK  7(3P21.2) WILD-TYPE 
                          503                           379 
[1] "DEL PEAK  8(3P14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3P14.1) MUTATED DEL PEAK  8(3P14.1) WILD-TYPE 
                          408                           474 
  DEL PEAK  8(3P14.1) MUTATED DEL PEAK  8(3P14.1) WILD-TYPE 
                          408                           474 
[1] "DEL PEAK  9(3P12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3P12.2) MUTATED DEL PEAK  9(3P12.2) WILD-TYPE 
                          336                           546 
  DEL PEAK  9(3P12.2) MUTATED DEL PEAK  9(3P12.2) WILD-TYPE 
                          336                           546 
[1] "DEL PEAK 10(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                          113                           769 
  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                          113                           769 
[1] "DEL PEAK 11(5P15.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(5P15.33) MUTATED DEL PEAK 11(5P15.33) WILD-TYPE 
                            31                            851 
  DEL PEAK 11(5P15.33) MUTATED DEL PEAK 11(5P15.33) WILD-TYPE 
                            31                            851 
[1] "DEL PEAK 12(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE 
                        233                         649 
  DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE 
                        233                         649 
[1] "DEL PEAK 13(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                        234                         648 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                        234                         648 
[1] "DEL PEAK 14(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          184                           698 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          184                           698 
[1] "DEL PEAK 15(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                        198                         684 
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                        198                         684 
[1] "DEL PEAK 16(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          209                           673 
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          209                           673 
[1] "DEL PEAK 17(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                            164                             718 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                            164                             718 
[1] "DEL PEAK 18(11Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(11Q23.1) MUTATED DEL PEAK 18(11Q23.1) WILD-TYPE 
                            71                            811 
  DEL PEAK 18(11Q23.1) MUTATED DEL PEAK 18(11Q23.1) WILD-TYPE 
                            71                            811 
[1] "DEL PEAK 19(13Q13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(13Q13.2) MUTATED DEL PEAK 19(13Q13.2) WILD-TYPE 
                           149                            733 
  DEL PEAK 19(13Q13.2) MUTATED DEL PEAK 19(13Q13.2) WILD-TYPE 
                           149                            733 
[1] "DEL PEAK 20(14Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(14Q31.1) MUTATED DEL PEAK 20(14Q31.1) WILD-TYPE 
                           279                            603 
  DEL PEAK 20(14Q31.1) MUTATED DEL PEAK 20(14Q31.1) WILD-TYPE 
                           279                            603 
[1] "DEL PEAK 21(16Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE 
                            37                            845 
  DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE 
                            37                            845 
[1] "DEL PEAK 22(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE 
                            43                            839 
  DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE 
                            43                            839 
[1] "DEL PEAK 23(XP22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(XP22.2) MUTATED DEL PEAK 23(XP22.2) WILD-TYPE 
                          125                           757 
  DEL PEAK 23(XP22.2) MUTATED DEL PEAK 23(XP22.2) WILD-TYPE 
                          125                           757 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 882 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 882 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=9, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(1Q32.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q32.1) MUTATED        3      5      1      1
  AMP PEAK 1(1Q32.1) WILD-TYPE     28     20     12     16
D1V1, multiclass
        clus
vv       AMP PEAK 1(1Q32.1) MUTATED AMP PEAK 1(1Q32.1) WILD-TYPE
  CLUS_1                          3                           28
  CLUS_2                          5                           20
  CLUS_3                          1                           12
  CLUS_4                          1                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 1(1Q32.1) MUTATED        2      5      1      1      1
  AMP PEAK 1(1Q32.1) WILD-TYPE     18     19     17     12     10
D1V2, multiclass
        clus
vv       AMP PEAK 1(1Q32.1) MUTATED AMP PEAK 1(1Q32.1) WILD-TYPE
  CLUS_1                          2                           18
  CLUS_2                          5                           19
  CLUS_3                          1                           17
  CLUS_4                          1                           12
  CLUS_5                          1                           10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q32.1) MUTATED        7      5     70
  AMP PEAK 1(1Q32.1) WILD-TYPE    321    195    284
D1V3, multiclass
        clus
vv       AMP PEAK 1(1Q32.1) MUTATED AMP PEAK 1(1Q32.1) WILD-TYPE
  CLUS_1                          7                          321
  CLUS_2                          5                          195
  CLUS_3                         70                          284
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 1(1Q32.1) MUTATED        3     17      8     17      3
  AMP PEAK 1(1Q32.1) WILD-TYPE     99    106    163     53    183
D1V4, multiclass
        clus
vv       AMP PEAK 1(1Q32.1) MUTATED AMP PEAK 1(1Q32.1) WILD-TYPE
  CLUS_1                          3                           99
  CLUS_2                         17                          106
  CLUS_3                          8                          163
  CLUS_4                         17                           53
  CLUS_5                          3                          183
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q32.1) MUTATED       20     12      8     31
  AMP PEAK 1(1Q32.1) WILD-TYPE    162    169    179    166
D1V5, multiclass
        clus
vv       AMP PEAK 1(1Q32.1) MUTATED AMP PEAK 1(1Q32.1) WILD-TYPE
  CLUS_1                         20                          162
  CLUS_2                         12                          169
  CLUS_3                          8                          179
  CLUS_4                         31                          166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 1(1Q32.1) MUTATED       15      1     14     14     10      3     14
  AMP PEAK 1(1Q32.1) WILD-TYPE    182     63    102    133     49     68     79
D1V6, multiclass
        clus
vv       AMP PEAK 1(1Q32.1) MUTATED AMP PEAK 1(1Q32.1) WILD-TYPE
  CLUS_1                         15                          182
  CLUS_2                          1                           63
  CLUS_3                         14                          102
  CLUS_4                         14                          133
  CLUS_5                         10                           49
  CLUS_6                          3                           68
  CLUS_7                         14                           79
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q32.1) MUTATED        5     36     25     14
  AMP PEAK 1(1Q32.1) WILD-TYPE    117    163    260    259
D1V7, multiclass
        clus
vv       AMP PEAK 1(1Q32.1) MUTATED AMP PEAK 1(1Q32.1) WILD-TYPE
  CLUS_1                          5                          117
  CLUS_2                         36                          163
  CLUS_3                         25                          260
  CLUS_4                         14                          259
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 1(1Q32.1) MUTATED        0      9     16     12     24      8      8
  AMP PEAK 1(1Q32.1) WILD-TYPE     88     52    132     72     97     30    103
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 1(1Q32.1) MUTATED        3      0
  AMP PEAK 1(1Q32.1) WILD-TYPE     56    169
D1V8, multiclass
        clus
vv       AMP PEAK 1(1Q32.1) MUTATED AMP PEAK 1(1Q32.1) WILD-TYPE
  CLUS_1                          0                           88
  CLUS_2                          9                           52
  CLUS_3                         16                          132
  CLUS_4                         12                           72
  CLUS_5                         24                           97
  CLUS_6                          8                           30
  CLUS_7                          8                          103
  CLUS_8                          3                           56
  CLUS_9                          0                          169
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q32.1) MUTATED       15     24     41
  AMP PEAK 1(1Q32.1) WILD-TYPE    327    170    287
D1V9, multiclass
        clus
vv       AMP PEAK 1(1Q32.1) MUTATED AMP PEAK 1(1Q32.1) WILD-TYPE
  CLUS_1                         15                          327
  CLUS_2                         24                          170
  CLUS_3                         41                          287
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q32.1) MUTATED        0     60     19      1
  AMP PEAK 1(1Q32.1) WILD-TYPE     76    287    214    207
D1V10, multiclass
        clus
vv       AMP PEAK 1(1Q32.1) MUTATED AMP PEAK 1(1Q32.1) WILD-TYPE
  CLUS_1                          0                           76
  CLUS_2                         60                          287
  CLUS_3                         19                          214
  CLUS_4                          1                          207
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q32.1) MUTATED        5      4     10     11
  AMP PEAK 1(1Q32.1) WILD-TYPE    151     65     55    111
D1V11, multiclass
        clus
vv       AMP PEAK 1(1Q32.1) MUTATED AMP PEAK 1(1Q32.1) WILD-TYPE
  CLUS_1                          5                          151
  CLUS_2                          4                           65
  CLUS_3                         10                           55
  CLUS_4                         11                          111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 1(1Q32.1) MUTATED        2     17      0      1      7      3      0
  AMP PEAK 1(1Q32.1) WILD-TYPE     89     66     49     19     39     74     46
D1V12, multiclass
        clus
vv       AMP PEAK 1(1Q32.1) MUTATED AMP PEAK 1(1Q32.1) WILD-TYPE
  CLUS_1                          2                           89
  CLUS_2                         17                           66
  CLUS_3                          0                           49
  CLUS_4                          1                           19
  CLUS_5                          7                           39
  CLUS_6                          3                           74
  CLUS_7                          0                           46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK 2(2Q32.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(2Q32.1) MUTATED        4      3      0      3
  AMP PEAK 2(2Q32.1) WILD-TYPE     27     22     13     14
D2V1, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          4                           27
  CLUS_2                          3                           22
  CLUS_3                          0                           13
  CLUS_4                          3                           14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 2(2Q32.1) MUTATED        1      3      3      3      0
  AMP PEAK 2(2Q32.1) WILD-TYPE     19     21     15     10     11
D2V2, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          1                           19
  CLUS_2                          3                           21
  CLUS_3                          3                           15
  CLUS_4                          3                           10
  CLUS_5                          0                           11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       44      6     86
  AMP PEAK 2(2Q32.1) WILD-TYPE    284    194    268
D2V3, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         44                          284
  CLUS_2                          6                          194
  CLUS_3                         86                          268
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 2(2Q32.1) MUTATED        5     14     26     20     34
  AMP PEAK 2(2Q32.1) WILD-TYPE     97    109    145     50    152
D2V4, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          5                           97
  CLUS_2                         14                          109
  CLUS_3                         26                          145
  CLUS_4                         20                           50
  CLUS_5                         34                          152
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(2Q32.1) MUTATED       28     29     34     25
  AMP PEAK 2(2Q32.1) WILD-TYPE    154    152    153    172
D2V5, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         28                          154
  CLUS_2                         29                          152
  CLUS_3                         34                          153
  CLUS_4                         25                          172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 2(2Q32.1) MUTATED       20      5     14     28     16     11     22
  AMP PEAK 2(2Q32.1) WILD-TYPE    177     59    102    119     43     60     71
D2V6, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         20                          177
  CLUS_2                          5                           59
  CLUS_3                         14                          102
  CLUS_4                         28                          119
  CLUS_5                         16                           43
  CLUS_6                         11                           60
  CLUS_7                         22                           71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(2Q32.1) MUTATED        8     34     47     47
  AMP PEAK 2(2Q32.1) WILD-TYPE    114    165    238    226
D2V7, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          8                          114
  CLUS_2                         34                          165
  CLUS_3                         47                          238
  CLUS_4                         47                          226
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 2(2Q32.1) MUTATED        1     11     20     14     27      5     25
  AMP PEAK 2(2Q32.1) WILD-TYPE     87     50    128     70     94     33     86
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 2(2Q32.1) MUTATED        2     31
  AMP PEAK 2(2Q32.1) WILD-TYPE     57    138
D2V8, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          1                           87
  CLUS_2                         11                           50
  CLUS_3                         20                          128
  CLUS_4                         14                           70
  CLUS_5                         27                           94
  CLUS_6                          5                           33
  CLUS_7                         25                           86
  CLUS_8                          2                           57
  CLUS_9                         31                          138
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       47     28     59
  AMP PEAK 2(2Q32.1) WILD-TYPE    295    166    269
D2V9, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         47                          295
  CLUS_2                         28                          166
  CLUS_3                         59                          269
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(2Q32.1) MUTATED        1     55     42     36
  AMP PEAK 2(2Q32.1) WILD-TYPE     75    292    191    172
D2V10, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          1                           75
  CLUS_2                         55                          292
  CLUS_3                         42                          191
  CLUS_4                         36                          172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(2Q32.1) MUTATED       26      5     15     21
  AMP PEAK 2(2Q32.1) WILD-TYPE    130     64     50    101
D2V11, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         26                          130
  CLUS_2                          5                           64
  CLUS_3                         15                           50
  CLUS_4                         21                          101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 2(2Q32.1) MUTATED       18     20      5      2     10     11      1
  AMP PEAK 2(2Q32.1) WILD-TYPE     73     63     44     18     36     66     45
D2V12, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         18                           73
  CLUS_2                         20                           63
  CLUS_3                          5                           44
  CLUS_4                          2                           18
  CLUS_5                         10                           36
  CLUS_6                         11                           66
  CLUS_7                          1                           45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK 3(3Q26.32) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(3Q26.32) MUTATED        2      7      2      6
  AMP PEAK 3(3Q26.32) WILD-TYPE     29     18     11     11
D3V1, multiclass
        clus
vv       AMP PEAK 3(3Q26.32) MUTATED AMP PEAK 3(3Q26.32) WILD-TYPE
  CLUS_1                           2                            29
  CLUS_2                           7                            18
  CLUS_3                           2                            11
  CLUS_4                           6                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 3(3Q26.32) MUTATED        1      7      6      1      2
  AMP PEAK 3(3Q26.32) WILD-TYPE     19     17     12     12      9
D3V2, multiclass
        clus
vv       AMP PEAK 3(3Q26.32) MUTATED AMP PEAK 3(3Q26.32) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           7                            17
  CLUS_3                           6                            12
  CLUS_4                           1                            12
  CLUS_5                           2                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q26.32) MUTATED      110      8     75
  AMP PEAK 3(3Q26.32) WILD-TYPE    218    192    279
D3V3, multiclass
        clus
vv       AMP PEAK 3(3Q26.32) MUTATED AMP PEAK 3(3Q26.32) WILD-TYPE
  CLUS_1                         110                           218
  CLUS_2                           8                           192
  CLUS_3                          75                           279
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 3(3Q26.32) MUTATED       10     30     13     20     78
  AMP PEAK 3(3Q26.32) WILD-TYPE     92     93    158     50    108
D3V4, multiclass
        clus
vv       AMP PEAK 3(3Q26.32) MUTATED AMP PEAK 3(3Q26.32) WILD-TYPE
  CLUS_1                          10                            92
  CLUS_2                          30                            93
  CLUS_3                          13                           158
  CLUS_4                          20                            50
  CLUS_5                          78                           108
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(3Q26.32) MUTATED       30     33     40     55
  AMP PEAK 3(3Q26.32) WILD-TYPE    152    148    147    142
D3V5, multiclass
        clus
vv       AMP PEAK 3(3Q26.32) MUTATED AMP PEAK 3(3Q26.32) WILD-TYPE
  CLUS_1                          30                           152
  CLUS_2                          33                           148
  CLUS_3                          40                           147
  CLUS_4                          55                           142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(3Q26.32) MUTATED       35     11     38     25     18     20
  AMP PEAK 3(3Q26.32) WILD-TYPE    162     53     78    122     41     51
                               vv
clus                            CLUS_7
  AMP PEAK 3(3Q26.32) MUTATED       11
  AMP PEAK 3(3Q26.32) WILD-TYPE     82
D3V6, multiclass
        clus
vv       AMP PEAK 3(3Q26.32) MUTATED AMP PEAK 3(3Q26.32) WILD-TYPE
  CLUS_1                          35                           162
  CLUS_2                          11                            53
  CLUS_3                          38                            78
  CLUS_4                          25                           122
  CLUS_5                          18                            41
  CLUS_6                          20                            51
  CLUS_7                          11                            82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(3Q26.32) MUTATED       13     53     24    103
  AMP PEAK 3(3Q26.32) WILD-TYPE    109    146    261    170
D3V7, multiclass
        clus
vv       AMP PEAK 3(3Q26.32) MUTATED AMP PEAK 3(3Q26.32) WILD-TYPE
  CLUS_1                          13                           109
  CLUS_2                          53                           146
  CLUS_3                          24                           261
  CLUS_4                         103                           170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(3Q26.32) MUTATED       10     16     13     15     37      8
  AMP PEAK 3(3Q26.32) WILD-TYPE     78     45    135     69     84     30
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 3(3Q26.32) MUTATED       11      5     78
  AMP PEAK 3(3Q26.32) WILD-TYPE    100     54     91
D3V8, multiclass
        clus
vv       AMP PEAK 3(3Q26.32) MUTATED AMP PEAK 3(3Q26.32) WILD-TYPE
  CLUS_1                          10                            78
  CLUS_2                          16                            45
  CLUS_3                          13                           135
  CLUS_4                          15                            69
  CLUS_5                          37                            84
  CLUS_6                           8                            30
  CLUS_7                          11                           100
  CLUS_8                           5                            54
  CLUS_9                          78                            91
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q26.32) MUTATED      112     37     41
  AMP PEAK 3(3Q26.32) WILD-TYPE    230    157    287
D3V9, multiclass
        clus
vv       AMP PEAK 3(3Q26.32) MUTATED AMP PEAK 3(3Q26.32) WILD-TYPE
  CLUS_1                         112                           230
  CLUS_2                          37                           157
  CLUS_3                          41                           287
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(3Q26.32) MUTATED        8     71     23     88
  AMP PEAK 3(3Q26.32) WILD-TYPE     68    276    210    120
D3V10, multiclass
        clus
vv       AMP PEAK 3(3Q26.32) MUTATED AMP PEAK 3(3Q26.32) WILD-TYPE
  CLUS_1                           8                            68
  CLUS_2                          71                           276
  CLUS_3                          23                           210
  CLUS_4                          88                           120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(3Q26.32) MUTATED       61      5     15     12
  AMP PEAK 3(3Q26.32) WILD-TYPE     95     64     50    110
D3V11, multiclass
        clus
vv       AMP PEAK 3(3Q26.32) MUTATED AMP PEAK 3(3Q26.32) WILD-TYPE
  CLUS_1                          61                            95
  CLUS_2                           5                            64
  CLUS_3                          15                            50
  CLUS_4                          12                           110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(3Q26.32) MUTATED       41     21     16      0      6      5
  AMP PEAK 3(3Q26.32) WILD-TYPE     50     62     33     20     40     72
                               vv
clus                            CLUS_7
  AMP PEAK 3(3Q26.32) MUTATED        4
  AMP PEAK 3(3Q26.32) WILD-TYPE     42
D3V12, multiclass
        clus
vv       AMP PEAK 3(3Q26.32) MUTATED AMP PEAK 3(3Q26.32) WILD-TYPE
  CLUS_1                          41                            50
  CLUS_2                          21                            62
  CLUS_3                          16                            33
  CLUS_4                           0                            20
  CLUS_5                           6                            40
  CLUS_6                           5                            72
  CLUS_7                           4                            42
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK 4(5Q35.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q35.1) MUTATED       19     16      3      2
  AMP PEAK 4(5Q35.1) WILD-TYPE     12      9     10     15
D4V1, multiclass
        clus
vv       AMP PEAK 4(5Q35.1) MUTATED AMP PEAK 4(5Q35.1) WILD-TYPE
  CLUS_1                         19                           12
  CLUS_2                         16                            9
  CLUS_3                          3                           10
  CLUS_4                          2                           15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 4(5Q35.1) MUTATED       13     15      2      7      3
  AMP PEAK 4(5Q35.1) WILD-TYPE      7      9     16      6      8
D4V2, multiclass
        clus
vv       AMP PEAK 4(5Q35.1) MUTATED AMP PEAK 4(5Q35.1) WILD-TYPE
  CLUS_1                         13                            7
  CLUS_2                         15                            9
  CLUS_3                          2                           16
  CLUS_4                          7                            6
  CLUS_5                          3                            8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.1) MUTATED       36     90    250
  AMP PEAK 4(5Q35.1) WILD-TYPE    292    110    104
D4V3, multiclass
        clus
vv       AMP PEAK 4(5Q35.1) MUTATED AMP PEAK 4(5Q35.1) WILD-TYPE
  CLUS_1                         36                          292
  CLUS_2                         90                          110
  CLUS_3                        250                          104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 4(5Q35.1) MUTATED       10     60    113     40     14
  AMP PEAK 4(5Q35.1) WILD-TYPE     92     63     58     30    172
D4V4, multiclass
        clus
vv       AMP PEAK 4(5Q35.1) MUTATED AMP PEAK 4(5Q35.1) WILD-TYPE
  CLUS_1                         10                           92
  CLUS_2                         60                           63
  CLUS_3                        113                           58
  CLUS_4                         40                           30
  CLUS_5                         14                          172
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q35.1) MUTATED       72     80     84    101
  AMP PEAK 4(5Q35.1) WILD-TYPE    110    101    103     96
D4V5, multiclass
        clus
vv       AMP PEAK 4(5Q35.1) MUTATED AMP PEAK 4(5Q35.1) WILD-TYPE
  CLUS_1                         72                          110
  CLUS_2                         80                          101
  CLUS_3                         84                          103
  CLUS_4                        101                           96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 4(5Q35.1) MUTATED       83      8     45     87     43     30     41
  AMP PEAK 4(5Q35.1) WILD-TYPE    114     56     71     60     16     41     52
D4V6, multiclass
        clus
vv       AMP PEAK 4(5Q35.1) MUTATED AMP PEAK 4(5Q35.1) WILD-TYPE
  CLUS_1                         83                          114
  CLUS_2                          8                           56
  CLUS_3                         45                           71
  CLUS_4                         87                           60
  CLUS_5                         43                           16
  CLUS_6                         30                           41
  CLUS_7                         41                           52
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q35.1) MUTATED       17    123    197     37
  AMP PEAK 4(5Q35.1) WILD-TYPE    105     76     88    236
D4V7, multiclass
        clus
vv       AMP PEAK 4(5Q35.1) MUTATED AMP PEAK 4(5Q35.1) WILD-TYPE
  CLUS_1                         17                          105
  CLUS_2                        123                           76
  CLUS_3                        197                           88
  CLUS_4                         37                          236
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 4(5Q35.1) MUTATED       11     10    108     20     81     29     68
  AMP PEAK 4(5Q35.1) WILD-TYPE     77     51     40     64     40      9     43
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 4(5Q35.1) MUTATED       37     10
  AMP PEAK 4(5Q35.1) WILD-TYPE     22    159
D4V8, multiclass
        clus
vv       AMP PEAK 4(5Q35.1) MUTATED AMP PEAK 4(5Q35.1) WILD-TYPE
  CLUS_1                         11                           77
  CLUS_2                         10                           51
  CLUS_3                        108                           40
  CLUS_4                         20                           64
  CLUS_5                         81                           40
  CLUS_6                         29                            9
  CLUS_7                         68                           43
  CLUS_8                         37                           22
  CLUS_9                         10                          159
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.1) MUTATED       43     96    228
  AMP PEAK 4(5Q35.1) WILD-TYPE    299     98    100
D4V9, multiclass
        clus
vv       AMP PEAK 4(5Q35.1) MUTATED AMP PEAK 4(5Q35.1) WILD-TYPE
  CLUS_1                         43                          299
  CLUS_2                         96                           98
  CLUS_3                        228                          100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q35.1) MUTATED        9    176    162     20
  AMP PEAK 4(5Q35.1) WILD-TYPE     67    171     71    188
D4V10, multiclass
        clus
vv       AMP PEAK 4(5Q35.1) MUTATED AMP PEAK 4(5Q35.1) WILD-TYPE
  CLUS_1                          9                           67
  CLUS_2                        176                          171
  CLUS_3                        162                           71
  CLUS_4                         20                          188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q35.1) MUTATED       19      7     18     91
  AMP PEAK 4(5Q35.1) WILD-TYPE    137     62     47     31
D4V11, multiclass
        clus
vv       AMP PEAK 4(5Q35.1) MUTATED AMP PEAK 4(5Q35.1) WILD-TYPE
  CLUS_1                         19                          137
  CLUS_2                          7                           62
  CLUS_3                         18                           47
  CLUS_4                         91                           31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 4(5Q35.1) MUTATED       15     22      2      0     33     57      6
  AMP PEAK 4(5Q35.1) WILD-TYPE     76     61     47     20     13     20     40
D4V12, multiclass
        clus
vv       AMP PEAK 4(5Q35.1) MUTATED AMP PEAK 4(5Q35.1) WILD-TYPE
  CLUS_1                         15                           76
  CLUS_2                         22                           61
  CLUS_3                          2                           47
  CLUS_4                          0                           20
  CLUS_5                         33                           13
  CLUS_6                         57                           20
  CLUS_7                          6                           40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK 5(7Q31.2) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(7Q31.2) MUTATED        9     10      5     12
  AMP PEAK 5(7Q31.2) WILD-TYPE     22     15      8      5
D5V1, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                          9                           22
  CLUS_2                         10                           15
  CLUS_3                          5                            8
  CLUS_4                         12                            5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 5(7Q31.2) MUTATED        5     10     13      4      4
  AMP PEAK 5(7Q31.2) WILD-TYPE     15     14      5      9      7
D5V2, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                          5                           15
  CLUS_2                         10                           14
  CLUS_3                         13                            5
  CLUS_4                          4                            9
  CLUS_5                          4                            7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q31.2) MUTATED      206     20    151
  AMP PEAK 5(7Q31.2) WILD-TYPE    122    180    203
D5V3, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                        206                          122
  CLUS_2                         20                          180
  CLUS_3                        151                          203
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 5(7Q31.2) MUTATED       30     45     40     31    136
  AMP PEAK 5(7Q31.2) WILD-TYPE     72     78    131     39     50
D5V4, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         30                           72
  CLUS_2                         45                           78
  CLUS_3                         40                          131
  CLUS_4                         31                           39
  CLUS_5                        136                           50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(7Q31.2) MUTATED       66     73     76    100
  AMP PEAK 5(7Q31.2) WILD-TYPE    116    108    111     97
D5V5, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         66                          116
  CLUS_2                         73                          108
  CLUS_3                         76                          111
  CLUS_4                        100                           97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 5(7Q31.2) MUTATED       95     24     58     44     28     34     32
  AMP PEAK 5(7Q31.2) WILD-TYPE    102     40     58    103     31     37     61
D5V6, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         95                          102
  CLUS_2                         24                           40
  CLUS_3                         58                           58
  CLUS_4                         44                          103
  CLUS_5                         28                           31
  CLUS_6                         34                           37
  CLUS_7                         32                           61
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(7Q31.2) MUTATED       38     92     71    174
  AMP PEAK 5(7Q31.2) WILD-TYPE     84    107    214     99
D5V7, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         38                           84
  CLUS_2                         92                          107
  CLUS_3                         71                          214
  CLUS_4                        174                           99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 5(7Q31.2) MUTATED       30     22     45     22     55     15     26
  AMP PEAK 5(7Q31.2) WILD-TYPE     58     39    103     62     66     23     85
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 5(7Q31.2) MUTATED       16    144
  AMP PEAK 5(7Q31.2) WILD-TYPE     43     25
D5V8, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         30                           58
  CLUS_2                         22                           39
  CLUS_3                         45                          103
  CLUS_4                         22                           62
  CLUS_5                         55                           66
  CLUS_6                         15                           23
  CLUS_7                         26                           85
  CLUS_8                         16                           43
  CLUS_9                        144                           25
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q31.2) MUTATED      195     75    104
  AMP PEAK 5(7Q31.2) WILD-TYPE    147    119    224
D5V9, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                        195                          147
  CLUS_2                         75                          119
  CLUS_3                        104                          224
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(7Q31.2) MUTATED       29    127     65    153
  AMP PEAK 5(7Q31.2) WILD-TYPE     47    220    168     55
D5V10, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         29                           47
  CLUS_2                        127                          220
  CLUS_3                         65                          168
  CLUS_4                        153                           55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(7Q31.2) MUTATED      111     23     28     38
  AMP PEAK 5(7Q31.2) WILD-TYPE     45     46     37     84
D5V11, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                        111                           45
  CLUS_2                         23                           46
  CLUS_3                         28                           37
  CLUS_4                         38                           84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 5(7Q31.2) MUTATED       62     38     42      1     14     23     20
  AMP PEAK 5(7Q31.2) WILD-TYPE     29     45      7     19     32     54     26
D5V12, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         62                           29
  CLUS_2                         38                           45
  CLUS_3                         42                            7
  CLUS_4                          1                           19
  CLUS_5                         14                           32
  CLUS_6                         23                           54
  CLUS_7                         20                           26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK 6(8Q24.22) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(8Q24.22) MUTATED        1      3      2      2
  AMP PEAK 6(8Q24.22) WILD-TYPE     30     22     11     15
D6V1, multiclass
        clus
vv       AMP PEAK 6(8Q24.22) MUTATED AMP PEAK 6(8Q24.22) WILD-TYPE
  CLUS_1                           1                            30
  CLUS_2                           3                            22
  CLUS_3                           2                            11
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 6(8Q24.22) MUTATED        1      3      3      0      1
  AMP PEAK 6(8Q24.22) WILD-TYPE     19     21     15     13     10
D6V2, multiclass
        clus
vv       AMP PEAK 6(8Q24.22) MUTATED AMP PEAK 6(8Q24.22) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           3                            21
  CLUS_3                           3                            15
  CLUS_4                           0                            13
  CLUS_5                           1                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(8Q24.22) MUTATED       39      6     80
  AMP PEAK 6(8Q24.22) WILD-TYPE    289    194    274
D6V3, multiclass
        clus
vv       AMP PEAK 6(8Q24.22) MUTATED AMP PEAK 6(8Q24.22) WILD-TYPE
  CLUS_1                          39                           289
  CLUS_2                           6                           194
  CLUS_3                          80                           274
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 6(8Q24.22) MUTATED       21     29      8     28     11
  AMP PEAK 6(8Q24.22) WILD-TYPE     81     94    163     42    175
D6V4, multiclass
        clus
vv       AMP PEAK 6(8Q24.22) MUTATED AMP PEAK 6(8Q24.22) WILD-TYPE
  CLUS_1                          21                            81
  CLUS_2                          29                            94
  CLUS_3                           8                           163
  CLUS_4                          28                            42
  CLUS_5                          11                           175
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(8Q24.22) MUTATED       35     16     19     46
  AMP PEAK 6(8Q24.22) WILD-TYPE    147    165    168    151
D6V5, multiclass
        clus
vv       AMP PEAK 6(8Q24.22) MUTATED AMP PEAK 6(8Q24.22) WILD-TYPE
  CLUS_1                          35                           147
  CLUS_2                          16                           165
  CLUS_3                          19                           168
  CLUS_4                          46                           151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 6(8Q24.22) MUTATED       25      7     35     13     16      8
  AMP PEAK 6(8Q24.22) WILD-TYPE    172     57     81    134     43     63
                               vv
clus                            CLUS_7
  AMP PEAK 6(8Q24.22) MUTATED       12
  AMP PEAK 6(8Q24.22) WILD-TYPE     81
D6V6, multiclass
        clus
vv       AMP PEAK 6(8Q24.22) MUTATED AMP PEAK 6(8Q24.22) WILD-TYPE
  CLUS_1                          25                           172
  CLUS_2                           7                            57
  CLUS_3                          35                            81
  CLUS_4                          13                           134
  CLUS_5                          16                            43
  CLUS_6                           8                            63
  CLUS_7                          12                            81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(8Q24.22) MUTATED       23     63     14     24
  AMP PEAK 6(8Q24.22) WILD-TYPE     99    136    271    249
D6V7, multiclass
        clus
vv       AMP PEAK 6(8Q24.22) MUTATED AMP PEAK 6(8Q24.22) WILD-TYPE
  CLUS_1                          23                            99
  CLUS_2                          63                           136
  CLUS_3                          14                           271
  CLUS_4                          24                           249
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 6(8Q24.22) MUTATED       18     12     11     14     50      4
  AMP PEAK 6(8Q24.22) WILD-TYPE     70     49    137     70     71     34
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 6(8Q24.22) MUTATED        2      5      8
  AMP PEAK 6(8Q24.22) WILD-TYPE    109     54    161
D6V8, multiclass
        clus
vv       AMP PEAK 6(8Q24.22) MUTATED AMP PEAK 6(8Q24.22) WILD-TYPE
  CLUS_1                          18                            70
  CLUS_2                          12                            49
  CLUS_3                          11                           137
  CLUS_4                          14                            70
  CLUS_5                          50                            71
  CLUS_6                           4                            34
  CLUS_7                           2                           109
  CLUS_8                           5                            54
  CLUS_9                           8                           161
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(8Q24.22) MUTATED       40     42     41
  AMP PEAK 6(8Q24.22) WILD-TYPE    302    152    287
D6V9, multiclass
        clus
vv       AMP PEAK 6(8Q24.22) MUTATED AMP PEAK 6(8Q24.22) WILD-TYPE
  CLUS_1                          40                           302
  CLUS_2                          42                           152
  CLUS_3                          41                           287
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(8Q24.22) MUTATED       18     81     13     11
  AMP PEAK 6(8Q24.22) WILD-TYPE     58    266    220    197
D6V10, multiclass
        clus
vv       AMP PEAK 6(8Q24.22) MUTATED AMP PEAK 6(8Q24.22) WILD-TYPE
  CLUS_1                          18                            58
  CLUS_2                          81                           266
  CLUS_3                          13                           220
  CLUS_4                          11                           197
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(8Q24.22) MUTATED       11     17     17     16
  AMP PEAK 6(8Q24.22) WILD-TYPE    145     52     48    106
D6V11, multiclass
        clus
vv       AMP PEAK 6(8Q24.22) MUTATED AMP PEAK 6(8Q24.22) WILD-TYPE
  CLUS_1                          11                           145
  CLUS_2                          17                            52
  CLUS_3                          17                            48
  CLUS_4                          16                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 6(8Q24.22) MUTATED        7     22      2      0      9      6
  AMP PEAK 6(8Q24.22) WILD-TYPE     84     61     47     20     37     71
                               vv
clus                            CLUS_7
  AMP PEAK 6(8Q24.22) MUTATED       15
  AMP PEAK 6(8Q24.22) WILD-TYPE     31
D6V12, multiclass
        clus
vv       AMP PEAK 6(8Q24.22) MUTATED AMP PEAK 6(8Q24.22) WILD-TYPE
  CLUS_1                           7                            84
  CLUS_2                          22                            61
  CLUS_3                           2                            47
  CLUS_4                           0                            20
  CLUS_5                           9                            37
  CLUS_6                           6                            71
  CLUS_7                          15                            31
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK 7(10P14) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(10P14) MUTATED        0      2      1      2
  AMP PEAK 7(10P14) WILD-TYPE     31     23     12     15
D7V1, multiclass
        clus
vv       AMP PEAK 7(10P14) MUTATED AMP PEAK 7(10P14) WILD-TYPE
  CLUS_1                         0                          31
  CLUS_2                         2                          23
  CLUS_3                         1                          12
  CLUS_4                         2                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 7(10P14) MUTATED        0      2      2      0      1
  AMP PEAK 7(10P14) WILD-TYPE     20     22     16     13     10
D7V2, multiclass
        clus
vv       AMP PEAK 7(10P14) MUTATED AMP PEAK 7(10P14) WILD-TYPE
  CLUS_1                         0                          20
  CLUS_2                         2                          22
  CLUS_3                         2                          16
  CLUS_4                         0                          13
  CLUS_5                         1                          10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(10P14) MUTATED       12      1     21
  AMP PEAK 7(10P14) WILD-TYPE    316    199    333
D7V3, multiclass
        clus
vv       AMP PEAK 7(10P14) MUTATED AMP PEAK 7(10P14) WILD-TYPE
  CLUS_1                        12                         316
  CLUS_2                         1                         199
  CLUS_3                        21                         333
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 7(10P14) MUTATED        6      6      3      6      3
  AMP PEAK 7(10P14) WILD-TYPE     96    117    168     64    183
D7V4, multiclass
        clus
vv       AMP PEAK 7(10P14) MUTATED AMP PEAK 7(10P14) WILD-TYPE
  CLUS_1                         6                          96
  CLUS_2                         6                         117
  CLUS_3                         3                         168
  CLUS_4                         6                          64
  CLUS_5                         3                         183
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(10P14) MUTATED       11      4      4     11
  AMP PEAK 7(10P14) WILD-TYPE    171    177    183    186
D7V5, multiclass
        clus
vv       AMP PEAK 7(10P14) MUTATED AMP PEAK 7(10P14) WILD-TYPE
  CLUS_1                        11                         171
  CLUS_2                         4                         177
  CLUS_3                         4                         183
  CLUS_4                        11                         186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 7(10P14) MUTATED        4      2     10      4      5      1      4
  AMP PEAK 7(10P14) WILD-TYPE    193     62    106    143     54     70     89
D7V6, multiclass
        clus
vv       AMP PEAK 7(10P14) MUTATED AMP PEAK 7(10P14) WILD-TYPE
  CLUS_1                         4                         193
  CLUS_2                         2                          62
  CLUS_3                        10                         106
  CLUS_4                         4                         143
  CLUS_5                         5                          54
  CLUS_6                         1                          70
  CLUS_7                         4                          89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(10P14) MUTATED        6     16      4      8
  AMP PEAK 7(10P14) WILD-TYPE    116    183    281    265
D7V7, multiclass
        clus
vv       AMP PEAK 7(10P14) MUTATED AMP PEAK 7(10P14) WILD-TYPE
  CLUS_1                         6                         116
  CLUS_2                        16                         183
  CLUS_3                         4                         281
  CLUS_4                         8                         265
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 7(10P14) MUTATED        4      6      3      4     11      2      0
  AMP PEAK 7(10P14) WILD-TYPE     84     55    145     80    110     36    111
                             vv
clus                          CLUS_8 CLUS_9
  AMP PEAK 7(10P14) MUTATED        1      3
  AMP PEAK 7(10P14) WILD-TYPE     58    166
D7V8, multiclass
        clus
vv       AMP PEAK 7(10P14) MUTATED AMP PEAK 7(10P14) WILD-TYPE
  CLUS_1                         4                          84
  CLUS_2                         6                          55
  CLUS_3                         3                         145
  CLUS_4                         4                          80
  CLUS_5                        11                         110
  CLUS_6                         2                          36
  CLUS_7                         0                         111
  CLUS_8                         1                          58
  CLUS_9                         3                         166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(10P14) MUTATED       12     11     11
  AMP PEAK 7(10P14) WILD-TYPE    330    183    317
D7V9, multiclass
        clus
vv       AMP PEAK 7(10P14) MUTATED AMP PEAK 7(10P14) WILD-TYPE
  CLUS_1                        12                         330
  CLUS_2                        11                         183
  CLUS_3                        11                         317
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(10P14) MUTATED        3     23      3      5
  AMP PEAK 7(10P14) WILD-TYPE     73    324    230    203
D7V10, multiclass
        clus
vv       AMP PEAK 7(10P14) MUTATED AMP PEAK 7(10P14) WILD-TYPE
  CLUS_1                         3                          73
  CLUS_2                        23                         324
  CLUS_3                         3                         230
  CLUS_4                         5                         203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(10P14) MUTATED        3      6      3      3
  AMP PEAK 7(10P14) WILD-TYPE    153     63     62    119
D7V11, multiclass
        clus
vv       AMP PEAK 7(10P14) MUTATED AMP PEAK 7(10P14) WILD-TYPE
  CLUS_1                         3                         153
  CLUS_2                         6                          63
  CLUS_3                         3                          62
  CLUS_4                         3                         119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 7(10P14) MUTATED        3      6      0      0      1      2      3
  AMP PEAK 7(10P14) WILD-TYPE     88     77     49     20     45     75     43
D7V12, multiclass
        clus
vv       AMP PEAK 7(10P14) MUTATED AMP PEAK 7(10P14) WILD-TYPE
  CLUS_1                         3                          88
  CLUS_2                         6                          77
  CLUS_3                         0                          49
  CLUS_4                         0                          20
  CLUS_5                         1                          45
  CLUS_6                         2                          75
  CLUS_7                         3                          43
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK 8(17Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 8(17Q24.3) MUTATED        1      1      3     12
  AMP PEAK 8(17Q24.3) WILD-TYPE     30     24     10      5
D8V1, multiclass
        clus
vv       AMP PEAK 8(17Q24.3) MUTATED AMP PEAK 8(17Q24.3) WILD-TYPE
  CLUS_1                           1                            30
  CLUS_2                           1                            24
  CLUS_3                           3                            10
  CLUS_4                          12                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 8(17Q24.3) MUTATED        1      1     13      0      2
  AMP PEAK 8(17Q24.3) WILD-TYPE     19     23      5     13      9
D8V2, multiclass
        clus
vv       AMP PEAK 8(17Q24.3) MUTATED AMP PEAK 8(17Q24.3) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           1                            23
  CLUS_3                          13                             5
  CLUS_4                           0                            13
  CLUS_5                           2                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 8(17Q24.3) MUTATED      191      4     48
  AMP PEAK 8(17Q24.3) WILD-TYPE    137    196    306
D8V3, multiclass
        clus
vv       AMP PEAK 8(17Q24.3) MUTATED AMP PEAK 8(17Q24.3) WILD-TYPE
  CLUS_1                         191                           137
  CLUS_2                           4                           196
  CLUS_3                          48                           306
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 8(17Q24.3) MUTATED       10     29     11     20    147
  AMP PEAK 8(17Q24.3) WILD-TYPE     92     94    160     50     39
D8V4, multiclass
        clus
vv       AMP PEAK 8(17Q24.3) MUTATED AMP PEAK 8(17Q24.3) WILD-TYPE
  CLUS_1                          10                            92
  CLUS_2                          29                            94
  CLUS_3                          11                           160
  CLUS_4                          20                            50
  CLUS_5                         147                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 8(17Q24.3) MUTATED       37     47     55     46
  AMP PEAK 8(17Q24.3) WILD-TYPE    145    134    132    151
D8V5, multiclass
        clus
vv       AMP PEAK 8(17Q24.3) MUTATED AMP PEAK 8(17Q24.3) WILD-TYPE
  CLUS_1                          37                           145
  CLUS_2                          47                           134
  CLUS_3                          55                           132
  CLUS_4                          46                           151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 8(17Q24.3) MUTATED       53     23     27     27     11     26
  AMP PEAK 8(17Q24.3) WILD-TYPE    144     41     89    120     48     45
                               vv
clus                            CLUS_7
  AMP PEAK 8(17Q24.3) MUTATED       18
  AMP PEAK 8(17Q24.3) WILD-TYPE     75
D8V6, multiclass
        clus
vv       AMP PEAK 8(17Q24.3) MUTATED AMP PEAK 8(17Q24.3) WILD-TYPE
  CLUS_1                          53                           144
  CLUS_2                          23                            41
  CLUS_3                          27                            89
  CLUS_4                          27                           120
  CLUS_5                          11                            48
  CLUS_6                          26                            45
  CLUS_7                          18                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 8(17Q24.3) MUTATED       12     24     14    193
  AMP PEAK 8(17Q24.3) WILD-TYPE    110    175    271     80
D8V7, multiclass
        clus
vv       AMP PEAK 8(17Q24.3) MUTATED AMP PEAK 8(17Q24.3) WILD-TYPE
  CLUS_1                          12                           110
  CLUS_2                          24                           175
  CLUS_3                          14                           271
  CLUS_4                         193                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 8(17Q24.3) MUTATED        2     20      8     38     16      4
  AMP PEAK 8(17Q24.3) WILD-TYPE     86     41    140     46    105     34
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 8(17Q24.3) MUTATED        3      2    150
  AMP PEAK 8(17Q24.3) WILD-TYPE    108     57     19
D8V8, multiclass
        clus
vv       AMP PEAK 8(17Q24.3) MUTATED AMP PEAK 8(17Q24.3) WILD-TYPE
  CLUS_1                           2                            86
  CLUS_2                          20                            41
  CLUS_3                           8                           140
  CLUS_4                          38                            46
  CLUS_5                          16                           105
  CLUS_6                           4                            34
  CLUS_7                           3                           108
  CLUS_8                           2                            57
  CLUS_9                         150                            19
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 8(17Q24.3) MUTATED      190     30     22
  AMP PEAK 8(17Q24.3) WILD-TYPE    152    164    306
D8V9, multiclass
        clus
vv       AMP PEAK 8(17Q24.3) MUTATED AMP PEAK 8(17Q24.3) WILD-TYPE
  CLUS_1                         190                           152
  CLUS_2                          30                           164
  CLUS_3                          22                           306
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 8(17Q24.3) MUTATED        1     68     11    162
  AMP PEAK 8(17Q24.3) WILD-TYPE     75    279    222     46
D8V10, multiclass
        clus
vv       AMP PEAK 8(17Q24.3) MUTATED AMP PEAK 8(17Q24.3) WILD-TYPE
  CLUS_1                           1                            75
  CLUS_2                          68                           279
  CLUS_3                          11                           222
  CLUS_4                         162                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 8(17Q24.3) MUTATED      120      7     31      4
  AMP PEAK 8(17Q24.3) WILD-TYPE     36     62     34    118
D8V11, multiclass
        clus
vv       AMP PEAK 8(17Q24.3) MUTATED AMP PEAK 8(17Q24.3) WILD-TYPE
  CLUS_1                         120                            36
  CLUS_2                           7                            62
  CLUS_3                          31                            34
  CLUS_4                           4                           118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 8(17Q24.3) MUTATED       68     39     45      3      4      2
  AMP PEAK 8(17Q24.3) WILD-TYPE     23     44      4     17     42     75
                               vv
clus                            CLUS_7
  AMP PEAK 8(17Q24.3) MUTATED        1
  AMP PEAK 8(17Q24.3) WILD-TYPE     45
D8V12, multiclass
        clus
vv       AMP PEAK 8(17Q24.3) MUTATED AMP PEAK 8(17Q24.3) WILD-TYPE
  CLUS_1                          68                            23
  CLUS_2                          39                            44
  CLUS_3                          45                             4
  CLUS_4                           3                            17
  CLUS_5                           4                            42
  CLUS_6                           2                            75
  CLUS_7                           1                            45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK 9(XQ11.2) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 9(XQ11.2) MUTATED        2      0      1      9
  AMP PEAK 9(XQ11.2) WILD-TYPE     29     25     12      8
D9V1, multiclass
        clus
vv       AMP PEAK 9(XQ11.2) MUTATED AMP PEAK 9(XQ11.2) WILD-TYPE
  CLUS_1                          2                           29
  CLUS_2                          0                           25
  CLUS_3                          1                           12
  CLUS_4                          9                            8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 9(XQ11.2) MUTATED        0      0      9      2      1
  AMP PEAK 9(XQ11.2) WILD-TYPE     20     24      9     11     10
D9V2, multiclass
        clus
vv       AMP PEAK 9(XQ11.2) MUTATED AMP PEAK 9(XQ11.2) WILD-TYPE
  CLUS_1                          0                           20
  CLUS_2                          0                           24
  CLUS_3                          9                            9
  CLUS_4                          2                           11
  CLUS_5                          1                           10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 9(XQ11.2) MUTATED      105      7     24
  AMP PEAK 9(XQ11.2) WILD-TYPE    223    193    330
D9V3, multiclass
        clus
vv       AMP PEAK 9(XQ11.2) MUTATED AMP PEAK 9(XQ11.2) WILD-TYPE
  CLUS_1                        105                          223
  CLUS_2                          7                          193
  CLUS_3                         24                          330
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 9(XQ11.2) MUTATED       10      8      3      6     83
  AMP PEAK 9(XQ11.2) WILD-TYPE     92    115    168     64    103
D9V4, multiclass
        clus
vv       AMP PEAK 9(XQ11.2) MUTATED AMP PEAK 9(XQ11.2) WILD-TYPE
  CLUS_1                         10                           92
  CLUS_2                          8                          115
  CLUS_3                          3                          168
  CLUS_4                          6                           64
  CLUS_5                         83                          103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 9(XQ11.2) MUTATED       20     26     28     30
  AMP PEAK 9(XQ11.2) WILD-TYPE    162    155    159    167
D9V5, multiclass
        clus
vv       AMP PEAK 9(XQ11.2) MUTATED AMP PEAK 9(XQ11.2) WILD-TYPE
  CLUS_1                         20                          162
  CLUS_2                         26                          155
  CLUS_3                         28                          159
  CLUS_4                         30                          167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 9(XQ11.2) MUTATED       36      9     19     14      3     17      6
  AMP PEAK 9(XQ11.2) WILD-TYPE    161     55     97    133     56     54     87
D9V6, multiclass
        clus
vv       AMP PEAK 9(XQ11.2) MUTATED AMP PEAK 9(XQ11.2) WILD-TYPE
  CLUS_1                         36                          161
  CLUS_2                          9                           55
  CLUS_3                         19                           97
  CLUS_4                         14                          133
  CLUS_5                          3                           56
  CLUS_6                         17                           54
  CLUS_7                          6                           87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 9(XQ11.2) MUTATED       13     14     11     98
  AMP PEAK 9(XQ11.2) WILD-TYPE    109    185    274    175
D9V7, multiclass
        clus
vv       AMP PEAK 9(XQ11.2) MUTATED AMP PEAK 9(XQ11.2) WILD-TYPE
  CLUS_1                         13                          109
  CLUS_2                         14                          185
  CLUS_3                         11                          274
  CLUS_4                         98                          175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 9(XQ11.2) MUTATED        9      6      3     10     11      1      6
  AMP PEAK 9(XQ11.2) WILD-TYPE     79     55    145     74    110     37    105
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 9(XQ11.2) MUTATED        2     88
  AMP PEAK 9(XQ11.2) WILD-TYPE     57     81
D9V8, multiclass
        clus
vv       AMP PEAK 9(XQ11.2) MUTATED AMP PEAK 9(XQ11.2) WILD-TYPE
  CLUS_1                          9                           79
  CLUS_2                          6                           55
  CLUS_3                          3                          145
  CLUS_4                         10                           74
  CLUS_5                         11                          110
  CLUS_6                          1                           37
  CLUS_7                          6                          105
  CLUS_8                          2                           57
  CLUS_9                         88                           81
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 9(XQ11.2) MUTATED      108     11     16
  AMP PEAK 9(XQ11.2) WILD-TYPE    234    183    312
D9V9, multiclass
        clus
vv       AMP PEAK 9(XQ11.2) MUTATED AMP PEAK 9(XQ11.2) WILD-TYPE
  CLUS_1                        108                          234
  CLUS_2                         11                          183
  CLUS_3                         16                          312
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 9(XQ11.2) MUTATED        8     25      9     93
  AMP PEAK 9(XQ11.2) WILD-TYPE     68    322    224    115
D9V10, multiclass
        clus
vv       AMP PEAK 9(XQ11.2) MUTATED AMP PEAK 9(XQ11.2) WILD-TYPE
  CLUS_1                          8                           68
  CLUS_2                         25                          322
  CLUS_3                          9                          224
  CLUS_4                         93                          115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 9(XQ11.2) MUTATED       60      9      3      5
  AMP PEAK 9(XQ11.2) WILD-TYPE     96     60     62    117
D9V11, multiclass
        clus
vv       AMP PEAK 9(XQ11.2) MUTATED AMP PEAK 9(XQ11.2) WILD-TYPE
  CLUS_1                         60                           96
  CLUS_2                          9                           60
  CLUS_3                          3                           62
  CLUS_4                          5                          117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 9(XQ11.2) MUTATED       36     12     20      0      1      2      6
  AMP PEAK 9(XQ11.2) WILD-TYPE     55     71     29     20     45     75     40
D9V12, multiclass
        clus
vv       AMP PEAK 9(XQ11.2) MUTATED AMP PEAK 9(XQ11.2) WILD-TYPE
  CLUS_1                         36                           55
  CLUS_2                         12                           71
  CLUS_3                         20                           29
  CLUS_4                          0                           20
  CLUS_5                          1                           45
  CLUS_6                          2                           75
  CLUS_7                          6                           40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        2      7      8      4
  DEL PEAK  1(1P36.31) WILD-TYPE     29     18      5     13
D10V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            2                             29
  CLUS_2                            7                             18
  CLUS_3                            8                              5
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED        1      7      5      1      7
  DEL PEAK  1(1P36.31) WILD-TYPE     19     17     13     12      4
D10V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            7                             17
  CLUS_3                            5                             13
  CLUS_4                            1                             12
  CLUS_5                            7                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       97     18     94
  DEL PEAK  1(1P36.31) WILD-TYPE    231    182    260
D10V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           97                            231
  CLUS_2                           18                            182
  CLUS_3                           94                            260
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED       64     30     20     29     20
  DEL PEAK  1(1P36.31) WILD-TYPE     38     93    151     41    166
D10V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           64                             38
  CLUS_2                           30                             93
  CLUS_3                           20                            151
  CLUS_4                           29                             41
  CLUS_5                           20                            166
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       48     38     50     48
  DEL PEAK  1(1P36.31) WILD-TYPE    134    143    137    149
D10V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           48                            134
  CLUS_2                           38                            143
  CLUS_3                           50                            137
  CLUS_4                           48                            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED       41     21     46     18     25     11
  DEL PEAK  1(1P36.31) WILD-TYPE    156     43     70    129     34     60
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.31) MUTATED       22
  DEL PEAK  1(1P36.31) WILD-TYPE     71
D10V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           41                            156
  CLUS_2                           21                             43
  CLUS_3                           46                             70
  CLUS_4                           18                            129
  CLUS_5                           25                             34
  CLUS_6                           11                             60
  CLUS_7                           22                             71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       72     54     32     51
  DEL PEAK  1(1P36.31) WILD-TYPE     50    145    253    222
D10V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           72                             50
  CLUS_2                           54                            145
  CLUS_3                           32                            253
  CLUS_4                           51                            222
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED       70     21     19     28     33     11
  DEL PEAK  1(1P36.31) WILD-TYPE     18     40    129     56     88     27
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  1(1P36.31) MUTATED        9      9      9
  DEL PEAK  1(1P36.31) WILD-TYPE    102     50    160
D10V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           70                             18
  CLUS_2                           21                             40
  CLUS_3                           19                            129
  CLUS_4                           28                             56
  CLUS_5                           33                             88
  CLUS_6                           11                             27
  CLUS_7                            9                            102
  CLUS_8                            9                             50
  CLUS_9                            9                            160
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED      110     45     54
  DEL PEAK  1(1P36.31) WILD-TYPE    232    149    274
D10V9, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                          110                            232
  CLUS_2                           45                            149
  CLUS_3                           54                            274
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       67     87     27     28
  DEL PEAK  1(1P36.31) WILD-TYPE      9    260    206    180
D10V10, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           67                              9
  CLUS_2                           87                            260
  CLUS_3                           27                            206
  CLUS_4                           28                            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       20     44     19     16
  DEL PEAK  1(1P36.31) WILD-TYPE    136     25     46    106
D10V11, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           20                            136
  CLUS_2                           44                             25
  CLUS_3                           19                             46
  CLUS_4                           16                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED       14     22      2      4     11      7
  DEL PEAK  1(1P36.31) WILD-TYPE     77     61     47     16     35     70
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.31) MUTATED       39
  DEL PEAK  1(1P36.31) WILD-TYPE      7
D10V12, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           14                             77
  CLUS_2                           22                             61
  CLUS_3                            2                             47
  CLUS_4                            4                             16
  CLUS_5                           11                             35
  CLUS_6                            7                             70
  CLUS_7                           39                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK  2(1P31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED        2      4      7      2
  DEL PEAK  2(1P31.1) WILD-TYPE     29     21      6     15
D11V1, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           2                            29
  CLUS_2                           4                            21
  CLUS_3                           7                             6
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P31.1) MUTATED        1      4      3      1      6
  DEL PEAK  2(1P31.1) WILD-TYPE     19     20     15     12      5
D11V2, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           4                            20
  CLUS_3                           3                            15
  CLUS_4                           1                            12
  CLUS_5                           6                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       87     15     64
  DEL PEAK  2(1P31.1) WILD-TYPE    241    185    290
D11V3, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          87                           241
  CLUS_2                          15                           185
  CLUS_3                          64                           290
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P31.1) MUTATED       62     18     15     22     14
  DEL PEAK  2(1P31.1) WILD-TYPE     40    105    156     48    172
D11V4, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          62                            40
  CLUS_2                          18                           105
  CLUS_3                          15                           156
  CLUS_4                          22                            48
  CLUS_5                          14                           172
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED       33     33     41     41
  DEL PEAK  2(1P31.1) WILD-TYPE    149    148    146    156
D11V5, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          33                           149
  CLUS_2                          33                           148
  CLUS_3                          41                           146
  CLUS_4                          41                           156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED       37     19     42     16     15      6
  DEL PEAK  2(1P31.1) WILD-TYPE    160     45     74    131     44     65
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P31.1) MUTATED       13
  DEL PEAK  2(1P31.1) WILD-TYPE     80
D11V6, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          37                           160
  CLUS_2                          19                            45
  CLUS_3                          42                            74
  CLUS_4                          16                           131
  CLUS_5                          15                            44
  CLUS_6                           6                            65
  CLUS_7                          13                            80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED       72     34     26     34
  DEL PEAK  2(1P31.1) WILD-TYPE     50    165    259    239
D11V7, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          72                            50
  CLUS_2                          34                           165
  CLUS_3                          26                           259
  CLUS_4                          34                           239
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED       69     18     16     17     21      4
  DEL PEAK  2(1P31.1) WILD-TYPE     19     43    132     67    100     34
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  2(1P31.1) MUTATED        7      6      8
  DEL PEAK  2(1P31.1) WILD-TYPE    104     53    161
D11V8, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          69                            19
  CLUS_2                          18                            43
  CLUS_3                          16                           132
  CLUS_4                          17                            67
  CLUS_5                          21                           100
  CLUS_6                           4                            34
  CLUS_7                           7                           104
  CLUS_8                           6                            53
  CLUS_9                           8                           161
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       94     27     45
  DEL PEAK  2(1P31.1) WILD-TYPE    248    167    283
D11V9, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          94                           248
  CLUS_2                          27                           167
  CLUS_3                          45                           283
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED       67     56     22     21
  DEL PEAK  2(1P31.1) WILD-TYPE      9    291    211    187
D11V10, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          67                             9
  CLUS_2                          56                           291
  CLUS_3                          22                           211
  CLUS_4                          21                           187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED       14     43     12     10
  DEL PEAK  2(1P31.1) WILD-TYPE    142     26     53    112
D11V11, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          14                           142
  CLUS_2                          43                            26
  CLUS_3                          12                            53
  CLUS_4                          10                           112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED       11     13      1      3      7      5
  DEL PEAK  2(1P31.1) WILD-TYPE     80     70     48     17     39     72
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P31.1) MUTATED       39
  DEL PEAK  2(1P31.1) WILD-TYPE      7
D11V12, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          11                            80
  CLUS_2                          13                            70
  CLUS_3                           1                            48
  CLUS_4                           3                            17
  CLUS_5                           7                            39
  CLUS_6                           5                            72
  CLUS_7                          39                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED        2      1      5      1
  DEL PEAK  3(1Q44) WILD-TYPE     29     24      8     16
D12V1, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         2                          29
  CLUS_2                         1                          24
  CLUS_3                         5                           8
  CLUS_4                         1                          16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED        1      1      1      1      5
  DEL PEAK  3(1Q44) WILD-TYPE     19     23     17     12      6
D12V2, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         1                          19
  CLUS_2                         1                          23
  CLUS_3                         1                          17
  CLUS_4                         1                          12
  CLUS_5                         5                           6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       80     12     24
  DEL PEAK  3(1Q44) WILD-TYPE    248    188    330
D12V3, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        80                         248
  CLUS_2                        12                         188
  CLUS_3                        24                         330
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED       55      9     15      5     12
  DEL PEAK  3(1Q44) WILD-TYPE     47    114    156     65    174
D12V4, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        55                          47
  CLUS_2                         9                         114
  CLUS_3                        15                         156
  CLUS_4                         5                          65
  CLUS_5                        12                         174
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED       24     25     28     26
  DEL PEAK  3(1Q44) WILD-TYPE    158    156    159    171
D12V5, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        24                         158
  CLUS_2                        25                         156
  CLUS_3                        28                         159
  CLUS_4                        26                         171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(1Q44) MUTATED       30     13     35     10      6      3      6
  DEL PEAK  3(1Q44) WILD-TYPE    167     51     81    137     53     68     87
D12V6, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        30                         167
  CLUS_2                        13                          51
  CLUS_3                        35                          81
  CLUS_4                        10                         137
  CLUS_5                         6                          53
  CLUS_6                         3                          68
  CLUS_7                         6                          87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED       64     14     20     18
  DEL PEAK  3(1Q44) WILD-TYPE     58    185    265    255
D12V7, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        64                          58
  CLUS_2                        14                         185
  CLUS_3                        20                         265
  CLUS_4                        18                         255
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(1Q44) MUTATED       64     10      9      5      7      2      8
  DEL PEAK  3(1Q44) WILD-TYPE     24     51    139     79    114     36    103
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK  3(1Q44) MUTATED        3      8
  DEL PEAK  3(1Q44) WILD-TYPE     56    161
D12V8, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        64                          24
  CLUS_2                        10                          51
  CLUS_3                         9                         139
  CLUS_4                         5                          79
  CLUS_5                         7                         114
  CLUS_6                         2                          36
  CLUS_7                         8                         103
  CLUS_8                         3                          56
  CLUS_9                         8                         161
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       76     15     25
  DEL PEAK  3(1Q44) WILD-TYPE    266    179    303
D12V9, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        76                         266
  CLUS_2                        15                         179
  CLUS_3                        25                         303
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED       63     19     18     16
  DEL PEAK  3(1Q44) WILD-TYPE     13    328    215    192
D12V10, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        63                          13
  CLUS_2                        19                         328
  CLUS_3                        18                         215
  CLUS_4                        16                         192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED       10     38      6      9
  DEL PEAK  3(1Q44) WILD-TYPE    146     31     59    113
D12V11, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        10                         146
  CLUS_2                        38                          31
  CLUS_3                         6                          59
  CLUS_4                         9                         113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(1Q44) MUTATED        7      5      2      0      4      7     38
  DEL PEAK  3(1Q44) WILD-TYPE     84     78     47     20     42     70      8
D12V12, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         7                          84
  CLUS_2                         5                          78
  CLUS_3                         2                          47
  CLUS_4                         0                          20
  CLUS_5                         4                          42
  CLUS_6                         7                          70
  CLUS_7                        38                           8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK  4(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        0      1      5      1
  DEL PEAK  4(2Q22.1) WILD-TYPE     31     24      8     16
D13V1, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                            31
  CLUS_2                           1                            24
  CLUS_3                           5                             8
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q22.1) MUTATED        0      1      1      0      5
  DEL PEAK  4(2Q22.1) WILD-TYPE     20     23     17     13      6
D13V2, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           1                            23
  CLUS_3                           1                            17
  CLUS_4                           0                            13
  CLUS_5                           5                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       57      8     10
  DEL PEAK  4(2Q22.1) WILD-TYPE    271    192    344
D13V3, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          57                           271
  CLUS_2                           8                           192
  CLUS_3                          10                           344
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q22.1) MUTATED       53      6      1      3      2
  DEL PEAK  4(2Q22.1) WILD-TYPE     49    117    170     67    184
D13V4, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          53                            49
  CLUS_2                           6                           117
  CLUS_3                           1                           170
  CLUS_4                           3                            67
  CLUS_5                           2                           184
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       18     14     20     14
  DEL PEAK  4(2Q22.1) WILD-TYPE    164    167    167    183
D13V5, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          18                           164
  CLUS_2                          14                           167
  CLUS_3                          20                           167
  CLUS_4                          14                           183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED       15     13     26      4      3      3
  DEL PEAK  4(2Q22.1) WILD-TYPE    182     51     90    143     56     68
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q22.1) MUTATED        2
  DEL PEAK  4(2Q22.1) WILD-TYPE     91
D13V6, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          15                           182
  CLUS_2                          13                            51
  CLUS_3                          26                            90
  CLUS_4                           4                           143
  CLUS_5                           3                            56
  CLUS_6                           3                            68
  CLUS_7                           2                            91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       59      7      0      9
  DEL PEAK  4(2Q22.1) WILD-TYPE     63    192    285    264
D13V7, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          59                            63
  CLUS_2                           7                           192
  CLUS_3                           0                           285
  CLUS_4                           9                           264
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED       58      5      1      7      4      0
  DEL PEAK  4(2Q22.1) WILD-TYPE     30     56    147     77    117     38
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  4(2Q22.1) MUTATED        0      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE    111     59    169
D13V8, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          58                            30
  CLUS_2                           5                            56
  CLUS_3                           1                           147
  CLUS_4                           7                            77
  CLUS_5                           4                           117
  CLUS_6                           0                            38
  CLUS_7                           0                           111
  CLUS_8                           0                            59
  CLUS_9                           0                           169
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       66      3      6
  DEL PEAK  4(2Q22.1) WILD-TYPE    276    191    322
D13V9, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          66                           276
  CLUS_2                           3                           191
  CLUS_3                           6                           322
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       57     14      0      4
  DEL PEAK  4(2Q22.1) WILD-TYPE     19    333    233    204
D13V10, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          57                            19
  CLUS_2                          14                           333
  CLUS_3                           0                           233
  CLUS_4                           4                           204
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        4     37      4      0
  DEL PEAK  4(2Q22.1) WILD-TYPE    152     32     61    122
D13V11, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           4                           152
  CLUS_2                          37                            32
  CLUS_3                           4                            61
  CLUS_4                           0                           122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED        3      4      1      1      1      0
  DEL PEAK  4(2Q22.1) WILD-TYPE     88     79     48     19     45     77
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q22.1) MUTATED       35
  DEL PEAK  4(2Q22.1) WILD-TYPE     11
D13V12, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           3                            88
  CLUS_2                           4                            79
  CLUS_3                           1                            48
  CLUS_4                           1                            19
  CLUS_5                           1                            45
  CLUS_6                           0                            77
  CLUS_7                          35                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK  5(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED        1      4      7      1
  DEL PEAK  5(2Q37.3) WILD-TYPE     30     21      6     16
D14V1, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           1                            30
  CLUS_2                           4                            21
  CLUS_3                           7                             6
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED        0      4      1      1      7
  DEL PEAK  5(2Q37.3) WILD-TYPE     20     20     17     12      4
D14V2, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           4                            20
  CLUS_3                           1                            17
  CLUS_4                           1                            12
  CLUS_5                           7                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       60     15     36
  DEL PEAK  5(2Q37.3) WILD-TYPE    268    185    318
D14V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          60                           268
  CLUS_2                          15                           185
  CLUS_3                          36                           318
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED       53     13     11      6      5
  DEL PEAK  5(2Q37.3) WILD-TYPE     49    110    160     64    181
D14V4, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          53                            49
  CLUS_2                          13                           110
  CLUS_3                          11                           160
  CLUS_4                           6                            64
  CLUS_5                           5                           181
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       26     19     28     24
  DEL PEAK  5(2Q37.3) WILD-TYPE    156    162    159    173
D14V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          26                           156
  CLUS_2                          19                           162
  CLUS_3                          28                           159
  CLUS_4                          24                           173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED       23     15     27     10     10      5
  DEL PEAK  5(2Q37.3) WILD-TYPE    174     49     89    137     49     66
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q37.3) MUTATED        7
  DEL PEAK  5(2Q37.3) WILD-TYPE     86
D14V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          23                           174
  CLUS_2                          15                            49
  CLUS_3                          27                            89
  CLUS_4                          10                           137
  CLUS_5                          10                            49
  CLUS_6                           5                            66
  CLUS_7                           7                            86
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       62     25     14      9
  DEL PEAK  5(2Q37.3) WILD-TYPE     60    174    271    264
D14V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          62                            60
  CLUS_2                          25                           174
  CLUS_3                          14                           271
  CLUS_4                           9                           264
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED       59      5      7      8     17      1
  DEL PEAK  5(2Q37.3) WILD-TYPE     29     56    141     76    104     37
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  5(2Q37.3) MUTATED        4      8      1
  DEL PEAK  5(2Q37.3) WILD-TYPE    107     51    168
D14V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          59                            29
  CLUS_2                           5                            56
  CLUS_3                           7                           141
  CLUS_4                           8                            76
  CLUS_5                          17                           104
  CLUS_6                           1                            37
  CLUS_7                           4                           107
  CLUS_8                           8                            51
  CLUS_9                           1                           168
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       67     17     25
  DEL PEAK  5(2Q37.3) WILD-TYPE    275    177    303
D14V9, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          67                           275
  CLUS_2                          17                           177
  CLUS_3                          25                           303
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       58     33     12      6
  DEL PEAK  5(2Q37.3) WILD-TYPE     18    314    221    202
D14V10, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          58                            18
  CLUS_2                          33                           314
  CLUS_3                          12                           221
  CLUS_4                           6                           202
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED        6     38      6      7
  DEL PEAK  5(2Q37.3) WILD-TYPE    150     31     59    115
D14V11, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           6                           150
  CLUS_2                          38                            31
  CLUS_3                           6                            59
  CLUS_4                           7                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED        6      7      0      1      3      4
  DEL PEAK  5(2Q37.3) WILD-TYPE     85     76     49     19     43     73
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q37.3) MUTATED       36
  DEL PEAK  5(2Q37.3) WILD-TYPE     10
D14V12, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           6                            85
  CLUS_2                           7                            76
  CLUS_3                           0                            49
  CLUS_4                           1                            19
  CLUS_5                           3                            43
  CLUS_6                           4                            73
  CLUS_7                          36                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK  6(3P26.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.3) MUTATED       30     24      4      0
  DEL PEAK  6(3P26.3) WILD-TYPE      1      1      9     17
D15V1, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          30                             1
  CLUS_2                          24                             1
  CLUS_3                           4                             9
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P26.3) MUTATED       20     23      1     12      2
  DEL PEAK  6(3P26.3) WILD-TYPE      0      1     17      1      9
D15V2, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          20                             0
  CLUS_2                          23                             1
  CLUS_3                           1                            17
  CLUS_4                          12                             1
  CLUS_5                           2                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.3) MUTATED       13    149    327
  DEL PEAK  6(3P26.3) WILD-TYPE    315     51     27
D15V3, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          13                           315
  CLUS_2                         149                            51
  CLUS_3                         327                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P26.3) MUTATED       14     71    161     52      6
  DEL PEAK  6(3P26.3) WILD-TYPE     88     52     10     18    180
D15V4, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          14                            88
  CLUS_2                          71                            52
  CLUS_3                         161                            10
  CLUS_4                          52                            18
  CLUS_5                           6                           180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.3) MUTATED      107    105     84    142
  DEL PEAK  6(3P26.3) WILD-TYPE     75     76    103     55
D15V5, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                         107                            75
  CLUS_2                         105                            76
  CLUS_3                          84                           103
  CLUS_4                         142                            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.3) MUTATED      120      1     59    108     46     43
  DEL PEAK  6(3P26.3) WILD-TYPE     77     63     57     39     13     28
                               vv
clus                            CLUS_7
  DEL PEAK  6(3P26.3) MUTATED       61
  DEL PEAK  6(3P26.3) WILD-TYPE     32
D15V6, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                         120                            77
  CLUS_2                           1                            63
  CLUS_3                          59                            57
  CLUS_4                         108                            39
  CLUS_5                          46                            13
  CLUS_6                          43                            28
  CLUS_7                          61                            32
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.3) MUTATED       22    162    274     28
  DEL PEAK  6(3P26.3) WILD-TYPE    100     37     11    245
D15V7, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          22                           100
  CLUS_2                         162                            37
  CLUS_3                         274                            11
  CLUS_4                          28                           245
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.3) MUTATED       11     12    144     16    109     35
  DEL PEAK  6(3P26.3) WILD-TYPE     77     49      4     68     12      3
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  6(3P26.3) MUTATED      104     52      3
  DEL PEAK  6(3P26.3) WILD-TYPE      7      7    166
D15V8, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          11                            77
  CLUS_2                          12                            49
  CLUS_3                         144                             4
  CLUS_4                          16                            68
  CLUS_5                         109                            12
  CLUS_6                          35                             3
  CLUS_7                         104                             7
  CLUS_8                          52                             7
  CLUS_9                           3                           166
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.3) MUTATED       36    133    303
  DEL PEAK  6(3P26.3) WILD-TYPE    306     61     25
D15V9, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          36                           306
  CLUS_2                         133                            61
  CLUS_3                         303                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.3) MUTATED       10    230    222     10
  DEL PEAK  6(3P26.3) WILD-TYPE     66    117     11    198
D15V10, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          10                            66
  CLUS_2                         230                           117
  CLUS_3                         222                            11
  CLUS_4                          10                           198
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.3) MUTATED        9     10     17    110
  DEL PEAK  6(3P26.3) WILD-TYPE    147     59     48     12
D15V11, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                           9                           147
  CLUS_2                          10                            59
  CLUS_3                          17                            48
  CLUS_4                         110                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.3) MUTATED        5     25      1      3     32     74
  DEL PEAK  6(3P26.3) WILD-TYPE     86     58     48     17     14      3
                               vv
clus                            CLUS_7
  DEL PEAK  6(3P26.3) MUTATED        6
  DEL PEAK  6(3P26.3) WILD-TYPE     40
D15V12, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                           5                            86
  CLUS_2                          25                            58
  CLUS_3                           1                            48
  CLUS_4                           3                            17
  CLUS_5                          32                            14
  CLUS_6                          74                             3
  CLUS_7                           6                            40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK  7(3P21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P21.2) MUTATED       29     24      4      1
  DEL PEAK  7(3P21.2) WILD-TYPE      2      1      9     16
D16V1, multiclass
        clus
vv       DEL PEAK  7(3P21.2) MUTATED DEL PEAK  7(3P21.2) WILD-TYPE
  CLUS_1                          29                             2
  CLUS_2                          24                             1
  CLUS_3                           4                             9
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P21.2) MUTATED       20     23      2     11      2
  DEL PEAK  7(3P21.2) WILD-TYPE      0      1     16      2      9
D16V2, multiclass
        clus
vv       DEL PEAK  7(3P21.2) MUTATED DEL PEAK  7(3P21.2) WILD-TYPE
  CLUS_1                          20                             0
  CLUS_2                          23                             1
  CLUS_3                           2                            16
  CLUS_4                          11                             2
  CLUS_5                           2                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P21.2) MUTATED       15    151    337
  DEL PEAK  7(3P21.2) WILD-TYPE    313     49     17
D16V3, multiclass
        clus
vv       DEL PEAK  7(3P21.2) MUTATED DEL PEAK  7(3P21.2) WILD-TYPE
  CLUS_1                          15                           313
  CLUS_2                         151                            49
  CLUS_3                         337                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P21.2) MUTATED       16     75    163     56      5
  DEL PEAK  7(3P21.2) WILD-TYPE     86     48      8     14    181
D16V4, multiclass
        clus
vv       DEL PEAK  7(3P21.2) MUTATED DEL PEAK  7(3P21.2) WILD-TYPE
  CLUS_1                          16                            86
  CLUS_2                          75                            48
  CLUS_3                         163                             8
  CLUS_4                          56                            14
  CLUS_5                           5                           181
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P21.2) MUTATED      111    109     85    146
  DEL PEAK  7(3P21.2) WILD-TYPE     71     72    102     51
D16V5, multiclass
        clus
vv       DEL PEAK  7(3P21.2) MUTATED DEL PEAK  7(3P21.2) WILD-TYPE
  CLUS_1                         111                            71
  CLUS_2                         109                            72
  CLUS_3                          85                           102
  CLUS_4                         146                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P21.2) MUTATED      122      3     60    110     48     44
  DEL PEAK  7(3P21.2) WILD-TYPE     75     61     56     37     11     27
                               vv
clus                            CLUS_7
  DEL PEAK  7(3P21.2) MUTATED       64
  DEL PEAK  7(3P21.2) WILD-TYPE     29
D16V6, multiclass
        clus
vv       DEL PEAK  7(3P21.2) MUTATED DEL PEAK  7(3P21.2) WILD-TYPE
  CLUS_1                         122                            75
  CLUS_2                           3                            61
  CLUS_3                          60                            56
  CLUS_4                         110                            37
  CLUS_5                          48                            11
  CLUS_6                          44                            27
  CLUS_7                          64                            29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P21.2) MUTATED       24    167    278     31
  DEL PEAK  7(3P21.2) WILD-TYPE     98     32      7    242
D16V7, multiclass
        clus
vv       DEL PEAK  7(3P21.2) MUTATED DEL PEAK  7(3P21.2) WILD-TYPE
  CLUS_1                          24                            98
  CLUS_2                         167                            32
  CLUS_3                         278                             7
  CLUS_4                          31                           242
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P21.2) MUTATED       13     13    146     20    112     37
  DEL PEAK  7(3P21.2) WILD-TYPE     75     48      2     64      9      1
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  7(3P21.2) MUTATED      106     51      2
  DEL PEAK  7(3P21.2) WILD-TYPE      5      8    167
D16V8, multiclass
        clus
vv       DEL PEAK  7(3P21.2) MUTATED DEL PEAK  7(3P21.2) WILD-TYPE
  CLUS_1                          13                            75
  CLUS_2                          13                            48
  CLUS_3                         146                             2
  CLUS_4                          20                            64
  CLUS_5                         112                             9
  CLUS_6                          37                             1
  CLUS_7                         106                             5
  CLUS_8                          51                             8
  CLUS_9                           2                           167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P21.2) MUTATED       40    134    312
  DEL PEAK  7(3P21.2) WILD-TYPE    302     60     16
D16V9, multiclass
        clus
vv       DEL PEAK  7(3P21.2) MUTATED DEL PEAK  7(3P21.2) WILD-TYPE
  CLUS_1                          40                           302
  CLUS_2                         134                            60
  CLUS_3                         312                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P21.2) MUTATED       12    238    227      9
  DEL PEAK  7(3P21.2) WILD-TYPE     64    109      6    199
D16V10, multiclass
        clus
vv       DEL PEAK  7(3P21.2) MUTATED DEL PEAK  7(3P21.2) WILD-TYPE
  CLUS_1                          12                            64
  CLUS_2                         238                           109
  CLUS_3                         227                             6
  CLUS_4                           9                           199
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P21.2) MUTATED        9     11     18    113
  DEL PEAK  7(3P21.2) WILD-TYPE    147     58     47      9
D16V11, multiclass
        clus
vv       DEL PEAK  7(3P21.2) MUTATED DEL PEAK  7(3P21.2) WILD-TYPE
  CLUS_1                           9                           147
  CLUS_2                          11                            58
  CLUS_3                          18                            47
  CLUS_4                         113                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P21.2) MUTATED        6     28      0      4     31     75
  DEL PEAK  7(3P21.2) WILD-TYPE     85     55     49     16     15      2
                               vv
clus                            CLUS_7
  DEL PEAK  7(3P21.2) MUTATED        7
  DEL PEAK  7(3P21.2) WILD-TYPE     39
D16V12, multiclass
        clus
vv       DEL PEAK  7(3P21.2) MUTATED DEL PEAK  7(3P21.2) WILD-TYPE
  CLUS_1                           6                            85
  CLUS_2                          28                            55
  CLUS_3                           0                            49
  CLUS_4                           4                            16
  CLUS_5                          31                            15
  CLUS_6                          75                             2
  CLUS_7                           7                            39
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK  8(3P14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.1) MUTATED       20     21      4      0
  DEL PEAK  8(3P14.1) WILD-TYPE     11      4      9     17
D17V1, multiclass
        clus
vv       DEL PEAK  8(3P14.1) MUTATED DEL PEAK  8(3P14.1) WILD-TYPE
  CLUS_1                          20                            11
  CLUS_2                          21                             4
  CLUS_3                           4                             9
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P14.1) MUTATED       15     20      1      7      2
  DEL PEAK  8(3P14.1) WILD-TYPE      5      4     17      6      9
D17V2, multiclass
        clus
vv       DEL PEAK  8(3P14.1) MUTATED DEL PEAK  8(3P14.1) WILD-TYPE
  CLUS_1                          15                             5
  CLUS_2                          20                             4
  CLUS_3                           1                            17
  CLUS_4                           7                             6
  CLUS_5                           2                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.1) MUTATED        7     99    302
  DEL PEAK  8(3P14.1) WILD-TYPE    321    101     52
D17V3, multiclass
        clus
vv       DEL PEAK  8(3P14.1) MUTATED DEL PEAK  8(3P14.1) WILD-TYPE
  CLUS_1                           7                           321
  CLUS_2                          99                           101
  CLUS_3                         302                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P14.1) MUTATED       15     65    131     46      5
  DEL PEAK  8(3P14.1) WILD-TYPE     87     58     40     24    181
D17V4, multiclass
        clus
vv       DEL PEAK  8(3P14.1) MUTATED DEL PEAK  8(3P14.1) WILD-TYPE
  CLUS_1                          15                            87
  CLUS_2                          65                            58
  CLUS_3                         131                            40
  CLUS_4                          46                            24
  CLUS_5                           5                           181
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.1) MUTATED       89     88     70    117
  DEL PEAK  8(3P14.1) WILD-TYPE     93     93    117     80
D17V5, multiclass
        clus
vv       DEL PEAK  8(3P14.1) MUTATED DEL PEAK  8(3P14.1) WILD-TYPE
  CLUS_1                          89                            93
  CLUS_2                          88                            93
  CLUS_3                          70                           117
  CLUS_4                         117                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P14.1) MUTATED      100      3     47     85     39     37
  DEL PEAK  8(3P14.1) WILD-TYPE     97     61     69     62     20     34
                               vv
clus                            CLUS_7
  DEL PEAK  8(3P14.1) MUTATED       53
  DEL PEAK  8(3P14.1) WILD-TYPE     40
D17V6, multiclass
        clus
vv       DEL PEAK  8(3P14.1) MUTATED DEL PEAK  8(3P14.1) WILD-TYPE
  CLUS_1                         100                            97
  CLUS_2                           3                            61
  CLUS_3                          47                            69
  CLUS_4                          85                            62
  CLUS_5                          39                            20
  CLUS_6                          37                            34
  CLUS_7                          53                            40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.1) MUTATED       22    142    217     25
  DEL PEAK  8(3P14.1) WILD-TYPE    100     57     68    248
D17V7, multiclass
        clus
vv       DEL PEAK  8(3P14.1) MUTATED DEL PEAK  8(3P14.1) WILD-TYPE
  CLUS_1                          22                           100
  CLUS_2                         142                            57
  CLUS_3                         217                            68
  CLUS_4                          25                           248
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P14.1) MUTATED       12     13    117     15     96     28
  DEL PEAK  8(3P14.1) WILD-TYPE     76     48     31     69     25     10
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  8(3P14.1) MUTATED       76     47      2
  DEL PEAK  8(3P14.1) WILD-TYPE     35     12    167
D17V8, multiclass
        clus
vv       DEL PEAK  8(3P14.1) MUTATED DEL PEAK  8(3P14.1) WILD-TYPE
  CLUS_1                          12                            76
  CLUS_2                          13                            48
  CLUS_3                         117                            31
  CLUS_4                          15                            69
  CLUS_5                          96                            25
  CLUS_6                          28                            10
  CLUS_7                          76                            35
  CLUS_8                          47                            12
  CLUS_9                           2                           167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.1) MUTATED       35    105    255
  DEL PEAK  8(3P14.1) WILD-TYPE    307     89     73
D17V9, multiclass
        clus
vv       DEL PEAK  8(3P14.1) MUTATED DEL PEAK  8(3P14.1) WILD-TYPE
  CLUS_1                          35                           307
  CLUS_2                         105                            89
  CLUS_3                         255                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.1) MUTATED       11    200    176      8
  DEL PEAK  8(3P14.1) WILD-TYPE     65    147     57    200
D17V10, multiclass
        clus
vv       DEL PEAK  8(3P14.1) MUTATED DEL PEAK  8(3P14.1) WILD-TYPE
  CLUS_1                          11                            65
  CLUS_2                         200                           147
  CLUS_3                         176                            57
  CLUS_4                           8                           200
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.1) MUTATED        9     10     16     87
  DEL PEAK  8(3P14.1) WILD-TYPE    147     59     49     35
D17V11, multiclass
        clus
vv       DEL PEAK  8(3P14.1) MUTATED DEL PEAK  8(3P14.1) WILD-TYPE
  CLUS_1                           9                           147
  CLUS_2                          10                            59
  CLUS_3                          16                            49
  CLUS_4                          87                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P14.1) MUTATED        6     25      0      2     26     56
  DEL PEAK  8(3P14.1) WILD-TYPE     85     58     49     18     20     21
                               vv
clus                            CLUS_7
  DEL PEAK  8(3P14.1) MUTATED        7
  DEL PEAK  8(3P14.1) WILD-TYPE     39
D17V12, multiclass
        clus
vv       DEL PEAK  8(3P14.1) MUTATED DEL PEAK  8(3P14.1) WILD-TYPE
  CLUS_1                           6                            85
  CLUS_2                          25                            58
  CLUS_3                           0                            49
  CLUS_4                           2                            18
  CLUS_5                          26                            20
  CLUS_6                          56                            21
  CLUS_7                           7                            39
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK  9(3P12.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P12.2) MUTATED       17     14      3      0
  DEL PEAK  9(3P12.2) WILD-TYPE     14     11     10     17
D18V1, multiclass
        clus
vv       DEL PEAK  9(3P12.2) MUTATED DEL PEAK  9(3P12.2) WILD-TYPE
  CLUS_1                          17                            14
  CLUS_2                          14                            11
  CLUS_3                           3                            10
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P12.2) MUTATED       12     14      1      6      1
  DEL PEAK  9(3P12.2) WILD-TYPE      8     10     17      7     10
D18V2, multiclass
        clus
vv       DEL PEAK  9(3P12.2) MUTATED DEL PEAK  9(3P12.2) WILD-TYPE
  CLUS_1                          12                             8
  CLUS_2                          14                            10
  CLUS_3                           1                            17
  CLUS_4                           6                             7
  CLUS_5                           1                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P12.2) MUTATED        8     70    258
  DEL PEAK  9(3P12.2) WILD-TYPE    320    130     96
D18V3, multiclass
        clus
vv       DEL PEAK  9(3P12.2) MUTATED DEL PEAK  9(3P12.2) WILD-TYPE
  CLUS_1                           8                           320
  CLUS_2                          70                           130
  CLUS_3                         258                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P12.2) MUTATED       14     54    106     39      5
  DEL PEAK  9(3P12.2) WILD-TYPE     88     69     65     31    181
D18V4, multiclass
        clus
vv       DEL PEAK  9(3P12.2) MUTATED DEL PEAK  9(3P12.2) WILD-TYPE
  CLUS_1                          14                            88
  CLUS_2                          54                            69
  CLUS_3                         106                            65
  CLUS_4                          39                            31
  CLUS_5                           5                           181
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P12.2) MUTATED       73     74     62     93
  DEL PEAK  9(3P12.2) WILD-TYPE    109    107    125    104
D18V5, multiclass
        clus
vv       DEL PEAK  9(3P12.2) MUTATED DEL PEAK  9(3P12.2) WILD-TYPE
  CLUS_1                          73                           109
  CLUS_2                          74                           107
  CLUS_3                          62                           125
  CLUS_4                          93                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P12.2) MUTATED       79      2     43     64     37     32
  DEL PEAK  9(3P12.2) WILD-TYPE    118     62     73     83     22     39
                               vv
clus                            CLUS_7
  DEL PEAK  9(3P12.2) MUTATED       45
  DEL PEAK  9(3P12.2) WILD-TYPE     48
D18V6, multiclass
        clus
vv       DEL PEAK  9(3P12.2) MUTATED DEL PEAK  9(3P12.2) WILD-TYPE
  CLUS_1                          79                           118
  CLUS_2                           2                            62
  CLUS_3                          43                            73
  CLUS_4                          64                            83
  CLUS_5                          37                            22
  CLUS_6                          32                            39
  CLUS_7                          45                            48
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P12.2) MUTATED       21    122    171     21
  DEL PEAK  9(3P12.2) WILD-TYPE    101     77    114    252
D18V7, multiclass
        clus
vv       DEL PEAK  9(3P12.2) MUTATED DEL PEAK  9(3P12.2) WILD-TYPE
  CLUS_1                          21                           101
  CLUS_2                         122                            77
  CLUS_3                         171                           114
  CLUS_4                          21                           252
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P12.2) MUTATED       12     11     93     13     81     23
  DEL PEAK  9(3P12.2) WILD-TYPE     76     50     55     71     40     15
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  9(3P12.2) MUTATED       61     39      2
  DEL PEAK  9(3P12.2) WILD-TYPE     50     20    167
D18V8, multiclass
        clus
vv       DEL PEAK  9(3P12.2) MUTATED DEL PEAK  9(3P12.2) WILD-TYPE
  CLUS_1                          12                            76
  CLUS_2                          11                            50
  CLUS_3                          93                            55
  CLUS_4                          13                            71
  CLUS_5                          81                            40
  CLUS_6                          23                            15
  CLUS_7                          61                            50
  CLUS_8                          39                            20
  CLUS_9                           2                           167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P12.2) MUTATED       31     84    210
  DEL PEAK  9(3P12.2) WILD-TYPE    311    110    118
D18V9, multiclass
        clus
vv       DEL PEAK  9(3P12.2) MUTATED DEL PEAK  9(3P12.2) WILD-TYPE
  CLUS_1                          31                           311
  CLUS_2                          84                           110
  CLUS_3                         210                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P12.2) MUTATED       11    170    136      8
  DEL PEAK  9(3P12.2) WILD-TYPE     65    177     97    200
D18V10, multiclass
        clus
vv       DEL PEAK  9(3P12.2) MUTATED DEL PEAK  9(3P12.2) WILD-TYPE
  CLUS_1                          11                            65
  CLUS_2                         170                           177
  CLUS_3                         136                            97
  CLUS_4                           8                           200
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P12.2) MUTATED        8      8     12     77
  DEL PEAK  9(3P12.2) WILD-TYPE    148     61     53     45
D18V11, multiclass
        clus
vv       DEL PEAK  9(3P12.2) MUTATED DEL PEAK  9(3P12.2) WILD-TYPE
  CLUS_1                           8                           148
  CLUS_2                           8                            61
  CLUS_3                          12                            53
  CLUS_4                          77                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P12.2) MUTATED        6     21      0      1     22     48
  DEL PEAK  9(3P12.2) WILD-TYPE     85     62     49     19     24     29
                               vv
clus                            CLUS_7
  DEL PEAK  9(3P12.2) MUTATED        7
  DEL PEAK  9(3P12.2) WILD-TYPE     39
D18V12, multiclass
        clus
vv       DEL PEAK  9(3P12.2) MUTATED DEL PEAK  9(3P12.2) WILD-TYPE
  CLUS_1                           6                            85
  CLUS_2                          21                            62
  CLUS_3                           0                            49
  CLUS_4                           1                            19
  CLUS_5                          22                            24
  CLUS_6                          48                            29
  CLUS_7                           7                            39
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 10(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q34.3) MUTATED        6      5      1      1
  DEL PEAK 10(4Q34.3) WILD-TYPE     25     20     12     16
D19V1, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           6                            25
  CLUS_2                           5                            20
  CLUS_3                           1                            12
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q34.3) MUTATED        2      5      1      4      1
  DEL PEAK 10(4Q34.3) WILD-TYPE     18     19     17      9     10
D19V2, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           5                            19
  CLUS_3                           1                            17
  CLUS_4                           4                             9
  CLUS_5                           1                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q34.3) MUTATED       26     10     77
  DEL PEAK 10(4Q34.3) WILD-TYPE    302    190    277
D19V3, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          26                           302
  CLUS_2                          10                           190
  CLUS_3                          77                           277
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q34.3) MUTATED        6     21     21     30      8
  DEL PEAK 10(4Q34.3) WILD-TYPE     96    102    150     40    178
D19V4, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           6                            96
  CLUS_2                          21                           102
  CLUS_3                          21                           150
  CLUS_4                          30                            40
  CLUS_5                           8                           178
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q34.3) MUTATED       30     20     18     34
  DEL PEAK 10(4Q34.3) WILD-TYPE    152    161    169    163
D19V5, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          30                           152
  CLUS_2                          20                           161
  CLUS_3                          18                           169
  CLUS_4                          34                           163
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q34.3) MUTATED       24      4     27     11     14      6
  DEL PEAK 10(4Q34.3) WILD-TYPE    173     60     89    136     45     65
                               vv
clus                            CLUS_7
  DEL PEAK 10(4Q34.3) MUTATED       16
  DEL PEAK 10(4Q34.3) WILD-TYPE     77
D19V6, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          24                           173
  CLUS_2                           4                            60
  CLUS_3                          27                            89
  CLUS_4                          11                           136
  CLUS_5                          14                            45
  CLUS_6                           6                            65
  CLUS_7                          16                            77
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q34.3) MUTATED        8     48     32     25
  DEL PEAK 10(4Q34.3) WILD-TYPE    114    151    253    248
D19V7, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           8                           114
  CLUS_2                          48                           151
  CLUS_3                          32                           253
  CLUS_4                          25                           248
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q34.3) MUTATED        2     18     20     18     31      6
  DEL PEAK 10(4Q34.3) WILD-TYPE     86     43    128     66     90     32
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 10(4Q34.3) MUTATED       11      5      2
  DEL PEAK 10(4Q34.3) WILD-TYPE    100     54    167
D19V8, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           2                            86
  CLUS_2                          18                            43
  CLUS_3                          20                           128
  CLUS_4                          18                            66
  CLUS_5                          31                            90
  CLUS_6                           6                            32
  CLUS_7                          11                           100
  CLUS_8                           5                            54
  CLUS_9                           2                           167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q34.3) MUTATED       31     36     45
  DEL PEAK 10(4Q34.3) WILD-TYPE    311    158    283
D19V9, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          31                           311
  CLUS_2                          36                           158
  CLUS_3                          45                           283
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q34.3) MUTATED        2     72     26     12
  DEL PEAK 10(4Q34.3) WILD-TYPE     74    275    207    196
D19V10, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           2                            74
  CLUS_2                          72                           275
  CLUS_3                          26                           207
  CLUS_4                          12                           196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q34.3) MUTATED       11      6     18     16
  DEL PEAK 10(4Q34.3) WILD-TYPE    145     63     47    106
D19V11, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          11                           145
  CLUS_2                           6                            63
  CLUS_3                          18                            47
  CLUS_4                          16                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q34.3) MUTATED        7     20      0      2     11      9
  DEL PEAK 10(4Q34.3) WILD-TYPE     84     63     49     18     35     68
                               vv
clus                            CLUS_7
  DEL PEAK 10(4Q34.3) MUTATED        2
  DEL PEAK 10(4Q34.3) WILD-TYPE     44
D19V12, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           7                            84
  CLUS_2                          20                            63
  CLUS_3                           0                            49
  CLUS_4                           2                            18
  CLUS_5                          11                            35
  CLUS_6                           9                            68
  CLUS_7                           2                            44
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 11(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5P15.33) MUTATED        0      1      0      0
  DEL PEAK 11(5P15.33) WILD-TYPE     31     24     13     17
D20V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 11(5P15.33) MUTATED"
clus
  DEL PEAK 11(5P15.33) MUTATED DEL PEAK 11(5P15.33) WILD-TYPE 
                             1                             85 
                    TCGA-A3-3306                     TCGA-A3-3307 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3308                     TCGA-A3-3311 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3313                     TCGA-A3-3316 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3317                     TCGA-A3-3319 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3320                     TCGA-A3-3322 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3323                     TCGA-A3-3324 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3325                     TCGA-A3-3326 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3331                     TCGA-A3-3335 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3336                     TCGA-A3-3343 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3346                     TCGA-A3-3347 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3349                     TCGA-A3-3351 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3352                     TCGA-A3-3359 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3362                     TCGA-A3-3363 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3365                     TCGA-A3-3372 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3374                     TCGA-A3-3378 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3380                     TCGA-A3-3382 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3383                     TCGA-AK-3426 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AK-3427                     TCGA-AK-3440 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AK-3443                     TCGA-AK-3444 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AK-3447                     TCGA-AK-3453 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AK-3455                     TCGA-AK-3456 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AK-3465                     TCGA-AL-3466 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AS-3777 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AS-3778                     TCGA-B2-3923 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B2-3924                     TCGA-B2-4098 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B2-4099                     TCGA-B2-4102 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B8-4148                     TCGA-B8-4151 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B8-4154                     TCGA-B8-4619 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B8-4620                     TCGA-B9-4113 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B9-4114                     TCGA-B9-4115 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B9-4116                     TCGA-B9-4117 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B9-4617                     TCGA-BP-4161 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-BP-4162                     TCGA-BP-4163 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-BP-4164                     TCGA-BP-4167 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4634                     TCGA-CJ-4636 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4637                     TCGA-CJ-4638 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4639                     TCGA-CJ-4640 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4641                     TCGA-CJ-4643 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4644 
"DEL PEAK 11(5P15.33) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5P15.33) MUTATED        0      1      0      0      0
  DEL PEAK 11(5P15.33) WILD-TYPE     20     23     18     13     11
D20V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 11(5P15.33) MUTATED"
clus
  DEL PEAK 11(5P15.33) MUTATED DEL PEAK 11(5P15.33) WILD-TYPE 
                             1                             85 
                    TCGA-A3-3306                     TCGA-A3-3307 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3308                     TCGA-A3-3311 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3313                     TCGA-A3-3316 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3317                     TCGA-A3-3319 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3320                     TCGA-A3-3322 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3323                     TCGA-A3-3324 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3325                     TCGA-A3-3326 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3331                     TCGA-A3-3335 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3336                     TCGA-A3-3343 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3346                     TCGA-A3-3347 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3349                     TCGA-A3-3351 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3352                     TCGA-A3-3359 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3362                     TCGA-A3-3363 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3365                     TCGA-A3-3372 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3374                     TCGA-A3-3378 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3380                     TCGA-A3-3382 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-A3-3383                     TCGA-AK-3426 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AK-3427                     TCGA-AK-3440 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AK-3443                     TCGA-AK-3444 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AK-3447                     TCGA-AK-3453 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AK-3455                     TCGA-AK-3456 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AK-3465                     TCGA-AL-3466 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AL-3467                     TCGA-AL-3468 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AL-3471                     TCGA-AL-3472 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AL-3473                     TCGA-AS-3777 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-AS-3778                     TCGA-B2-3923 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B2-3924                     TCGA-B2-4098 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B2-4099                     TCGA-B2-4102 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B3-3925                     TCGA-B3-3926 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B3-4103                     TCGA-B3-4104 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B8-4148                     TCGA-B8-4151 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B8-4154                     TCGA-B8-4619 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B8-4620                     TCGA-B9-4113 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B9-4114                     TCGA-B9-4115 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B9-4116                     TCGA-B9-4117 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-B9-4617                     TCGA-BP-4161 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-BP-4162                     TCGA-BP-4163 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-BP-4164                     TCGA-BP-4167 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4634                     TCGA-CJ-4636 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4637                     TCGA-CJ-4638 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4639                     TCGA-CJ-4640 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4641                     TCGA-CJ-4643 
"DEL PEAK 11(5P15.33) WILD-TYPE" "DEL PEAK 11(5P15.33) WILD-TYPE" 
                    TCGA-CJ-4644 
"DEL PEAK 11(5P15.33) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5P15.33) MUTATED       22      6      3
  DEL PEAK 11(5P15.33) WILD-TYPE    306    194    351
D20V3, multiclass
        clus
vv       DEL PEAK 11(5P15.33) MUTATED DEL PEAK 11(5P15.33) WILD-TYPE
  CLUS_1                           22                            306
  CLUS_2                            6                            194
  CLUS_3                            3                            351
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5P15.33) MUTATED       13      4      1      3      8
  DEL PEAK 11(5P15.33) WILD-TYPE     89    119    170     67    178
D20V4, multiclass
        clus
vv       DEL PEAK 11(5P15.33) MUTATED DEL PEAK 11(5P15.33) WILD-TYPE
  CLUS_1                           13                             89
  CLUS_2                            4                            119
  CLUS_3                            1                            170
  CLUS_4                            3                             67
  CLUS_5                            8                            178
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5P15.33) MUTATED       12      8      2      6
  DEL PEAK 11(5P15.33) WILD-TYPE    170    173    185    191
D20V5, multiclass
        clus
vv       DEL PEAK 11(5P15.33) MUTATED DEL PEAK 11(5P15.33) WILD-TYPE
  CLUS_1                           12                            170
  CLUS_2                            8                            173
  CLUS_3                            2                            185
  CLUS_4                            6                            191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5P15.33) MUTATED        6      3      2      2      6      3
  DEL PEAK 11(5P15.33) WILD-TYPE    191     61    114    145     53     68
                                vv
clus                             CLUS_7
  DEL PEAK 11(5P15.33) MUTATED        6
  DEL PEAK 11(5P15.33) WILD-TYPE     87
D20V6, multiclass
        clus
vv       DEL PEAK 11(5P15.33) MUTATED DEL PEAK 11(5P15.33) WILD-TYPE
  CLUS_1                            6                            191
  CLUS_2                            3                             61
  CLUS_3                            2                            114
  CLUS_4                            2                            145
  CLUS_5                            6                             53
  CLUS_6                            3                             68
  CLUS_7                            6                             87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5P15.33) MUTATED       12      9      1      9
  DEL PEAK 11(5P15.33) WILD-TYPE    110    190    284    264
D20V7, multiclass
        clus
vv       DEL PEAK 11(5P15.33) MUTATED DEL PEAK 11(5P15.33) WILD-TYPE
  CLUS_1                           12                            110
  CLUS_2                            9                            190
  CLUS_3                            1                            284
  CLUS_4                            9                            264
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5P15.33) MUTATED       11      7      1      5      4      0
  DEL PEAK 11(5P15.33) WILD-TYPE     77     54    147     79    117     38
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 11(5P15.33) MUTATED        0      1      2
  DEL PEAK 11(5P15.33) WILD-TYPE    111     58    167
D20V8, multiclass
        clus
vv       DEL PEAK 11(5P15.33) MUTATED DEL PEAK 11(5P15.33) WILD-TYPE
  CLUS_1                           11                             77
  CLUS_2                            7                             54
  CLUS_3                            1                            147
  CLUS_4                            5                             79
  CLUS_5                            4                            117
  CLUS_6                            0                             38
  CLUS_7                            0                            111
  CLUS_8                            1                             58
  CLUS_9                            2                            167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5P15.33) MUTATED       21      7      3
  DEL PEAK 11(5P15.33) WILD-TYPE    321    187    325
D20V9, multiclass
        clus
vv       DEL PEAK 11(5P15.33) MUTATED DEL PEAK 11(5P15.33) WILD-TYPE
  CLUS_1                           21                            321
  CLUS_2                            7                            187
  CLUS_3                            3                            325
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5P15.33) MUTATED       11     14      0      6
  DEL PEAK 11(5P15.33) WILD-TYPE     65    333    233    202
D20V10, multiclass
        clus
vv       DEL PEAK 11(5P15.33) MUTATED DEL PEAK 11(5P15.33) WILD-TYPE
  CLUS_1                           11                             65
  CLUS_2                           14                            333
  CLUS_3                            0                            233
  CLUS_4                            6                            202
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5P15.33) MUTATED        6      8      5      1
  DEL PEAK 11(5P15.33) WILD-TYPE    150     61     60    121
D20V11, multiclass
        clus
vv       DEL PEAK 11(5P15.33) MUTATED DEL PEAK 11(5P15.33) WILD-TYPE
  CLUS_1                            6                            150
  CLUS_2                            8                             61
  CLUS_3                            5                             60
  CLUS_4                            1                            121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5P15.33) MUTATED        3      8      1      0      0      0
  DEL PEAK 11(5P15.33) WILD-TYPE     88     75     48     20     46     77
                                vv
clus                             CLUS_7
  DEL PEAK 11(5P15.33) MUTATED        8
  DEL PEAK 11(5P15.33) WILD-TYPE     38
D20V12, multiclass
        clus
vv       DEL PEAK 11(5P15.33) MUTATED DEL PEAK 11(5P15.33) WILD-TYPE
  CLUS_1                            3                             88
  CLUS_2                            8                             75
  CLUS_3                            1                             48
  CLUS_4                            0                             20
  CLUS_5                            0                             46
  CLUS_6                            0                             77
  CLUS_7                            8                             38
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK 12(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED        7     12      8      1
  DEL PEAK 12(6Q26) WILD-TYPE     24     13      5     16
D21V1, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                         7                          24
  CLUS_2                        12                          13
  CLUS_3                         8                           5
  CLUS_4                         1                          16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q26) MUTATED        4     12      2      3      7
  DEL PEAK 12(6Q26) WILD-TYPE     16     12     16     10      4
D21V2, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                         4                          16
  CLUS_2                        12                          12
  CLUS_3                         2                          16
  CLUS_4                         3                          10
  CLUS_5                         7                           4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       78     11    144
  DEL PEAK 12(6Q26) WILD-TYPE    250    189    210
D21V3, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        78                         250
  CLUS_2                        11                         189
  CLUS_3                       144                         210
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q26) MUTATED       58     29     33     29     12
  DEL PEAK 12(6Q26) WILD-TYPE     44     94    138     41    174
D21V4, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        58                          44
  CLUS_2                        29                          94
  CLUS_3                        33                         138
  CLUS_4                        29                          41
  CLUS_5                        12                         174
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       41     51     43     74
  DEL PEAK 12(6Q26) WILD-TYPE    141    130    144    123
D21V5, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        41                         141
  CLUS_2                        51                         130
  CLUS_3                        43                         144
  CLUS_4                        74                         123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 12(6Q26) MUTATED       62     14     51     34     24      8     16
  DEL PEAK 12(6Q26) WILD-TYPE    135     50     65    113     35     63     77
D21V6, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        62                         135
  CLUS_2                        14                          50
  CLUS_3                        51                          65
  CLUS_4                        34                         113
  CLUS_5                        24                          35
  CLUS_6                         8                          63
  CLUS_7                        16                          77
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       67     70     65     29
  DEL PEAK 12(6Q26) WILD-TYPE     55    129    220    244
D21V7, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        67                          55
  CLUS_2                        70                         129
  CLUS_3                        65                         220
  CLUS_4                        29                         244
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 12(6Q26) MUTATED       61     18     30     15     49      9     28
  DEL PEAK 12(6Q26) WILD-TYPE     27     43    118     69     72     29     83
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 12(6Q26) MUTATED       16      5
  DEL PEAK 12(6Q26) WILD-TYPE     43    164
D21V8, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        61                          27
  CLUS_2                        18                          43
  CLUS_3                        30                         118
  CLUS_4                        15                          69
  CLUS_5                        49                          72
  CLUS_6                         9                          29
  CLUS_7                        28                          83
  CLUS_8                        16                          43
  CLUS_9                         5                         164
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       86     50     93
  DEL PEAK 12(6Q26) WILD-TYPE    256    144    235
D21V9, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        86                         256
  CLUS_2                        50                         144
  CLUS_3                        93                         235
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       60     97     52     20
  DEL PEAK 12(6Q26) WILD-TYPE     16    250    181    188
D21V10, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        60                          16
  CLUS_2                        97                         250
  CLUS_3                        52                         181
  CLUS_4                        20                         188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       12     39     15     29
  DEL PEAK 12(6Q26) WILD-TYPE    144     30     50     93
D21V11, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        12                         144
  CLUS_2                        39                          30
  CLUS_3                        15                          50
  CLUS_4                        29                          93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 12(6Q26) MUTATED        9     16      2      0     15     16     37
  DEL PEAK 12(6Q26) WILD-TYPE     82     67     47     20     31     61      9
D21V12, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                         9                          82
  CLUS_2                        16                          67
  CLUS_3                         2                          47
  CLUS_4                         0                          20
  CLUS_5                        15                          31
  CLUS_6                        16                          61
  CLUS_7                        37                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK 13(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        7     12      8      1
  DEL PEAK 13(6Q26) WILD-TYPE     24     13      5     16
D22V1, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         7                          24
  CLUS_2                        12                          13
  CLUS_3                         8                           5
  CLUS_4                         1                          16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        4     12      2      3      7
  DEL PEAK 13(6Q26) WILD-TYPE     16     12     16     10      4
D22V2, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         4                          16
  CLUS_2                        12                          12
  CLUS_3                         2                          16
  CLUS_4                         3                          10
  CLUS_5                         7                           4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       79     10    145
  DEL PEAK 13(6Q26) WILD-TYPE    249    190    209
D22V3, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        79                         249
  CLUS_2                        10                         190
  CLUS_3                       145                         209
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED       58     30     32     29     13
  DEL PEAK 13(6Q26) WILD-TYPE     44     93    139     41    173
D22V4, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        58                          44
  CLUS_2                        30                          93
  CLUS_3                        32                         139
  CLUS_4                        29                          41
  CLUS_5                        13                         173
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       41     51     43     74
  DEL PEAK 13(6Q26) WILD-TYPE    141    130    144    123
D22V5, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        41                         141
  CLUS_2                        51                         130
  CLUS_3                        43                         144
  CLUS_4                        74                         123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(6Q26) MUTATED       61     14     51     34     25      8     16
  DEL PEAK 13(6Q26) WILD-TYPE    136     50     65    113     34     63     77
D22V6, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        61                         136
  CLUS_2                        14                          50
  CLUS_3                        51                          65
  CLUS_4                        34                         113
  CLUS_5                        25                          34
  CLUS_6                         8                          63
  CLUS_7                        16                          77
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       67     71     64     30
  DEL PEAK 13(6Q26) WILD-TYPE     55    128    221    243
D22V7, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        67                          55
  CLUS_2                        71                         128
  CLUS_3                        64                         221
  CLUS_4                        30                         243
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(6Q26) MUTATED       61     18     30     15     50      8     28
  DEL PEAK 13(6Q26) WILD-TYPE     27     43    118     69     71     30     83
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 13(6Q26) MUTATED       16      6
  DEL PEAK 13(6Q26) WILD-TYPE     43    163
D22V8, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        61                          27
  CLUS_2                        18                          43
  CLUS_3                        30                         118
  CLUS_4                        15                          69
  CLUS_5                        50                          71
  CLUS_6                         8                          30
  CLUS_7                        28                          83
  CLUS_8                        16                          43
  CLUS_9                         6                         163
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       87     49     94
  DEL PEAK 13(6Q26) WILD-TYPE    255    145    234
D22V9, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        87                         255
  CLUS_2                        49                         145
  CLUS_3                        94                         234
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       60     97     52     21
  DEL PEAK 13(6Q26) WILD-TYPE     16    250    181    187
D22V10, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        60                          16
  CLUS_2                        97                         250
  CLUS_3                        52                         181
  CLUS_4                        21                         187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       12     39     15     29
  DEL PEAK 13(6Q26) WILD-TYPE    144     30     50     93
D22V11, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        12                         144
  CLUS_2                        39                          30
  CLUS_3                        15                          50
  CLUS_4                        29                          93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(6Q26) MUTATED        9     16      2      0     15     16     37
  DEL PEAK 13(6Q26) WILD-TYPE     82     67     47     20     31     61      9
D22V12, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         9                          82
  CLUS_2                        16                          67
  CLUS_3                         2                          47
  CLUS_4                         0                          20
  CLUS_5                        15                          31
  CLUS_6                        16                          61
  CLUS_7                        37                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK 14(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.2) MUTATED        5      7      5      3
  DEL PEAK 14(8P23.2) WILD-TYPE     26     18      8     14
D23V1, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           5                            26
  CLUS_2                           7                            18
  CLUS_3                           5                             8
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED        3      7      3      3      4
  DEL PEAK 14(8P23.2) WILD-TYPE     17     17     15     10      7
D23V2, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           3                            17
  CLUS_2                           7                            17
  CLUS_3                           3                            15
  CLUS_4                           3                            10
  CLUS_5                           4                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED       31     28    125
  DEL PEAK 14(8P23.2) WILD-TYPE    297    172    229
D23V3, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          31                           297
  CLUS_2                          28                           172
  CLUS_3                         125                           229
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED       16     30     39     22      7
  DEL PEAK 14(8P23.2) WILD-TYPE     86     93    132     48    179
D23V4, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          16                            86
  CLUS_2                          30                            93
  CLUS_3                          39                           132
  CLUS_4                          22                            48
  CLUS_5                           7                           179
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.2) MUTATED       45     32     37     47
  DEL PEAK 14(8P23.2) WILD-TYPE    137    149    150    150
D23V5, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          45                           137
  CLUS_2                          32                           149
  CLUS_3                          37                           150
  CLUS_4                          47                           150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED       37      8     29     27     21     11
  DEL PEAK 14(8P23.2) WILD-TYPE    160     56     87    120     38     60
                               vv
clus                            CLUS_7
  DEL PEAK 14(8P23.2) MUTATED       28
  DEL PEAK 14(8P23.2) WILD-TYPE     65
D23V6, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          37                           160
  CLUS_2                           8                            56
  CLUS_3                          29                            87
  CLUS_4                          27                           120
  CLUS_5                          21                            38
  CLUS_6                          11                            60
  CLUS_7                          28                            65
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.2) MUTATED       22     76     70     15
  DEL PEAK 14(8P23.2) WILD-TYPE    100    123    215    258
D23V7, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          22                           100
  CLUS_2                          76                           123
  CLUS_3                          70                           215
  CLUS_4                          15                           258
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED       17     11     39      5     56      6
  DEL PEAK 14(8P23.2) WILD-TYPE     71     50    109     79     65     32
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 14(8P23.2) MUTATED       25     20      4
  DEL PEAK 14(8P23.2) WILD-TYPE     86     39    165
D23V8, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          17                            71
  CLUS_2                          11                            50
  CLUS_3                          39                           109
  CLUS_4                           5                            79
  CLUS_5                          56                            65
  CLUS_6                           6                            32
  CLUS_7                          25                            86
  CLUS_8                          20                            39
  CLUS_9                           4                           165
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED       33     55     93
  DEL PEAK 14(8P23.2) WILD-TYPE    309    139    235
D23V9, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          33                           309
  CLUS_2                          55                           139
  CLUS_3                          93                           235
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.2) MUTATED       15    107     52      7
  DEL PEAK 14(8P23.2) WILD-TYPE     61    240    181    201
D23V10, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          15                            61
  CLUS_2                         107                           240
  CLUS_3                          52                           181
  CLUS_4                           7                           201
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.2) MUTATED        5     10     10     35
  DEL PEAK 14(8P23.2) WILD-TYPE    151     59     55     87
D23V11, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           5                           151
  CLUS_2                          10                            59
  CLUS_3                          10                            55
  CLUS_4                          35                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED        4     10      1      2     17     19
  DEL PEAK 14(8P23.2) WILD-TYPE     87     73     48     18     29     58
                               vv
clus                            CLUS_7
  DEL PEAK 14(8P23.2) MUTATED        7
  DEL PEAK 14(8P23.2) WILD-TYPE     39
D23V12, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           4                            87
  CLUS_2                          10                            73
  CLUS_3                           1                            48
  CLUS_4                           2                            18
  CLUS_5                          17                            29
  CLUS_6                          19                            58
  CLUS_7                           7                            39
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK 15(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED        5     12      1      3
  DEL PEAK 15(9P23) WILD-TYPE     26     13     12     14
D24V1, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                         5                          26
  CLUS_2                        12                          13
  CLUS_3                         1                          12
  CLUS_4                         3                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P23) MUTATED        4     12      3      1      1
  DEL PEAK 15(9P23) WILD-TYPE     16     12     15     12     10
D24V2, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                         4                          16
  CLUS_2                        12                          12
  CLUS_3                         3                          15
  CLUS_4                         1                          12
  CLUS_5                         1                          10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       34     13    151
  DEL PEAK 15(9P23) WILD-TYPE    294    187    203
D24V3, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        34                         294
  CLUS_2                        13                         187
  CLUS_3                       151                         203
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P23) MUTATED       16     46     23     44      9
  DEL PEAK 15(9P23) WILD-TYPE     86     77    148     26    177
D24V4, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        16                          86
  CLUS_2                        46                          77
  CLUS_3                        23                         148
  CLUS_4                        44                          26
  CLUS_5                         9                         177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       49     36     24     70
  DEL PEAK 15(9P23) WILD-TYPE    133    145    163    127
D24V5, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        49                         133
  CLUS_2                        36                         145
  CLUS_3                        24                         163
  CLUS_4                        70                         127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 15(9P23) MUTATED       44      6     42     21     30     11     25
  DEL PEAK 15(9P23) WILD-TYPE    153     58     74    126     29     60     68
D24V6, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        44                         153
  CLUS_2                         6                          58
  CLUS_3                        42                          74
  CLUS_4                        21                         126
  CLUS_5                        30                          29
  CLUS_6                        11                          60
  CLUS_7                        25                          68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       19    107     37     34
  DEL PEAK 15(9P23) WILD-TYPE    103     92    248    239
D24V7, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        19                         103
  CLUS_2                       107                          92
  CLUS_3                        37                         248
  CLUS_4                        34                         239
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 15(9P23) MUTATED       11     24     24     15     76     12     10
  DEL PEAK 15(9P23) WILD-TYPE     77     37    124     69     45     26    101
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 15(9P23) MUTATED       20      5
  DEL PEAK 15(9P23) WILD-TYPE     39    164
D24V8, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        11                          77
  CLUS_2                        24                          37
  CLUS_3                        24                         124
  CLUS_4                        15                          69
  CLUS_5                        76                          45
  CLUS_6                        12                          26
  CLUS_7                        10                         101
  CLUS_8                        20                          39
  CLUS_9                         5                         164
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       40     65     88
  DEL PEAK 15(9P23) WILD-TYPE    302    129    240
D24V9, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        40                         302
  CLUS_2                        65                         129
  CLUS_3                        88                         240
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       10    135     32     16
  DEL PEAK 15(9P23) WILD-TYPE     66    212    201    192
D24V10, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        10                          66
  CLUS_2                       135                         212
  CLUS_3                        32                         201
  CLUS_4                        16                         192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       11     10     24     27
  DEL PEAK 15(9P23) WILD-TYPE    145     59     41     95
D24V11, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        11                         145
  CLUS_2                        10                          59
  CLUS_3                        24                          41
  CLUS_4                        27                          95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 15(9P23) MUTATED        8     26      2      4     15     11      6
  DEL PEAK 15(9P23) WILD-TYPE     83     57     47     16     31     66     40
D24V12, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                         8                          83
  CLUS_2                        26                          57
  CLUS_3                         2                          47
  CLUS_4                         4                          16
  CLUS_5                        15                          31
  CLUS_6                        11                          66
  CLUS_7                         6                          40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK 16(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED        5     13      1      3
  DEL PEAK 16(9P21.3) WILD-TYPE     26     12     12     14
D25V1, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                           5                            26
  CLUS_2                          13                            12
  CLUS_3                           1                            12
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P21.3) MUTATED        4     13      3      1      1
  DEL PEAK 16(9P21.3) WILD-TYPE     16     11     15     12     10
D25V2, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                           4                            16
  CLUS_2                          13                            11
  CLUS_3                           3                            15
  CLUS_4                           1                            12
  CLUS_5                           1                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       38     14    157
  DEL PEAK 16(9P21.3) WILD-TYPE    290    186    197
D25V3, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          38                           290
  CLUS_2                          14                           186
  CLUS_3                         157                           197
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P21.3) MUTATED       18     52     24     42      9
  DEL PEAK 16(9P21.3) WILD-TYPE     84     71    147     28    177
D25V4, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          18                            84
  CLUS_2                          52                            71
  CLUS_3                          24                           147
  CLUS_4                          42                            28
  CLUS_5                           9                           177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       56     37     24     70
  DEL PEAK 16(9P21.3) WILD-TYPE    126    144    163    127
D25V5, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          56                           126
  CLUS_2                          37                           144
  CLUS_3                          24                           163
  CLUS_4                          70                           127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED       41      6     46     23     30     12
  DEL PEAK 16(9P21.3) WILD-TYPE    156     58     70    124     29     59
                               vv
clus                            CLUS_7
  DEL PEAK 16(9P21.3) MUTATED       29
  DEL PEAK 16(9P21.3) WILD-TYPE     64
D25V6, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          41                           156
  CLUS_2                           6                            58
  CLUS_3                          46                            70
  CLUS_4                          23                           124
  CLUS_5                          30                            29
  CLUS_6                          12                            59
  CLUS_7                          29                            64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       20    115     38     35
  DEL PEAK 16(9P21.3) WILD-TYPE    102     84    247    238
D25V7, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          20                           102
  CLUS_2                         115                            84
  CLUS_3                          38                           247
  CLUS_4                          35                           238
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED       11     30     25     15     79     13
  DEL PEAK 16(9P21.3) WILD-TYPE     77     31    123     69     42     25
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 16(9P21.3) MUTATED       10     20      5
  DEL PEAK 16(9P21.3) WILD-TYPE    101     39    164
D25V8, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          11                            77
  CLUS_2                          30                            31
  CLUS_3                          25                           123
  CLUS_4                          15                            69
  CLUS_5                          79                            42
  CLUS_6                          13                            25
  CLUS_7                          10                           101
  CLUS_8                          20                            39
  CLUS_9                           5                           164
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       43     73     87
  DEL PEAK 16(9P21.3) WILD-TYPE    299    121    241
D25V9, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          43                           299
  CLUS_2                          73                           121
  CLUS_3                          87                           241
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       10    144     32     17
  DEL PEAK 16(9P21.3) WILD-TYPE     66    203    201    191
D25V10, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          10                            66
  CLUS_2                         144                           203
  CLUS_3                          32                           201
  CLUS_4                          17                           191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       10     10     27     29
  DEL PEAK 16(9P21.3) WILD-TYPE    146     59     38     93
D25V11, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          10                           146
  CLUS_2                          10                            59
  CLUS_3                          27                            38
  CLUS_4                          29                            93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED        7     30      2      4     17     10
  DEL PEAK 16(9P21.3) WILD-TYPE     84     53     47     16     29     67
                               vv
clus                            CLUS_7
  DEL PEAK 16(9P21.3) MUTATED        6
  DEL PEAK 16(9P21.3) WILD-TYPE     40
D25V12, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                           7                            84
  CLUS_2                          30                            53
  CLUS_3                           2                            47
  CLUS_4                           4                            16
  CLUS_5                          17                            29
  CLUS_6                          10                            67
  CLUS_7                           6                            40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 17(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q23.31) MUTATED        5      6      4      1
  DEL PEAK 17(10Q23.31) WILD-TYPE     26     19      9     16
D26V1, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                             5                              26
  CLUS_2                             6                              19
  CLUS_3                             4                               9
  CLUS_4                             1                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q23.31) MUTATED        2      6      1      3      4
  DEL PEAK 17(10Q23.31) WILD-TYPE     18     18     17     10      7
D26V2, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                             2                              18
  CLUS_2                             6                              18
  CLUS_3                             1                              17
  CLUS_4                             3                              10
  CLUS_5                             4                               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q23.31) MUTATED       62     16     86
  DEL PEAK 17(10Q23.31) WILD-TYPE    266    184    268
D26V3, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            62                             266
  CLUS_2                            16                             184
  CLUS_3                            86                             268
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q23.31) MUTATED       57     22     23     20      4
  DEL PEAK 17(10Q23.31) WILD-TYPE     45    101    148     50    182
D26V4, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            57                              45
  CLUS_2                            22                             101
  CLUS_3                            23                             148
  CLUS_4                            20                              50
  CLUS_5                             4                             182
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q23.31) MUTATED       40     38     30     38
  DEL PEAK 17(10Q23.31) WILD-TYPE    142    143    157    159
D26V5, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            40                             142
  CLUS_2                            38                             143
  CLUS_3                            30                             157
  CLUS_4                            38                             159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q23.31) MUTATED       35     10     41     26     13      6
  DEL PEAK 17(10Q23.31) WILD-TYPE    162     54     75    121     46     65
                                 vv
clus                              CLUS_7
  DEL PEAK 17(10Q23.31) MUTATED       15
  DEL PEAK 17(10Q23.31) WILD-TYPE     78
D26V6, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            35                             162
  CLUS_2                            10                              54
  CLUS_3                            41                              75
  CLUS_4                            26                             121
  CLUS_5                            13                              46
  CLUS_6                             6                              65
  CLUS_7                            15                              78
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q23.31) MUTATED       64     45     40     14
  DEL PEAK 17(10Q23.31) WILD-TYPE     58    154    245    259
D26V7, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            64                              58
  CLUS_2                            45                             154
  CLUS_3                            40                             245
  CLUS_4                            14                             259
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q23.31) MUTATED       60      9     24     13     32      3
  DEL PEAK 17(10Q23.31) WILD-TYPE     28     52    124     71     89     35
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 17(10Q23.31) MUTATED       15      6      1
  DEL PEAK 17(10Q23.31) WILD-TYPE     96     53    168
D26V8, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            60                              28
  CLUS_2                             9                              52
  CLUS_3                            24                             124
  CLUS_4                            13                              71
  CLUS_5                            32                              89
  CLUS_6                             3                              35
  CLUS_7                            15                              96
  CLUS_8                             6                              53
  CLUS_9                             1                             168
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q23.31) MUTATED       72     37     53
  DEL PEAK 17(10Q23.31) WILD-TYPE    270    157    275
D26V9, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            72                             270
  CLUS_2                            37                             157
  CLUS_3                            53                             275
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q23.31) MUTATED       58     69     29      6
  DEL PEAK 17(10Q23.31) WILD-TYPE     18    278    204    202
D26V10, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            58                              18
  CLUS_2                            69                             278
  CLUS_3                            29                             204
  CLUS_4                             6                             202
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q23.31) MUTATED        3     40     12     15
  DEL PEAK 17(10Q23.31) WILD-TYPE    153     29     53    107
D26V11, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                             3                             153
  CLUS_2                            40                              29
  CLUS_3                            12                              53
  CLUS_4                            15                             107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q23.31) MUTATED        1     12      1      3      9      9
  DEL PEAK 17(10Q23.31) WILD-TYPE     90     71     48     17     37     68
                                 vv
clus                              CLUS_7
  DEL PEAK 17(10Q23.31) MUTATED       35
  DEL PEAK 17(10Q23.31) WILD-TYPE     11
D26V12, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                             1                              90
  CLUS_2                            12                              71
  CLUS_3                             1                              48
  CLUS_4                             3                              17
  CLUS_5                             9                              37
  CLUS_6                             9                              68
  CLUS_7                            35                              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 18(11Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11Q23.1) MUTATED        0      2      2      0
  DEL PEAK 18(11Q23.1) WILD-TYPE     31     23     11     17
D27V1, multiclass
        clus
vv       DEL PEAK 18(11Q23.1) MUTATED DEL PEAK 18(11Q23.1) WILD-TYPE
  CLUS_1                            0                             31
  CLUS_2                            2                             23
  CLUS_3                            2                             11
  CLUS_4                            0                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11Q23.1) MUTATED        0      2      0      0      2
  DEL PEAK 18(11Q23.1) WILD-TYPE     20     22     18     13      9
D27V2, multiclass
        clus
vv       DEL PEAK 18(11Q23.1) MUTATED DEL PEAK 18(11Q23.1) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            2                             22
  CLUS_3                            0                             18
  CLUS_4                            0                             13
  CLUS_5                            2                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q23.1) MUTATED       28      4     39
  DEL PEAK 18(11Q23.1) WILD-TYPE    300    196    315
D27V3, multiclass
        clus
vv       DEL PEAK 18(11Q23.1) MUTATED DEL PEAK 18(11Q23.1) WILD-TYPE
  CLUS_1                           28                            300
  CLUS_2                            4                            196
  CLUS_3                           39                            315
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11Q23.1) MUTATED       10     20      5     18      8
  DEL PEAK 18(11Q23.1) WILD-TYPE     92    103    166     52    178
D27V4, multiclass
        clus
vv       DEL PEAK 18(11Q23.1) MUTATED DEL PEAK 18(11Q23.1) WILD-TYPE
  CLUS_1                           10                             92
  CLUS_2                           20                            103
  CLUS_3                            5                            166
  CLUS_4                           18                             52
  CLUS_5                            8                            178
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11Q23.1) MUTATED       17     12     12     22
  DEL PEAK 18(11Q23.1) WILD-TYPE    165    169    175    175
D27V5, multiclass
        clus
vv       DEL PEAK 18(11Q23.1) MUTATED DEL PEAK 18(11Q23.1) WILD-TYPE
  CLUS_1                           17                            165
  CLUS_2                           12                            169
  CLUS_3                           12                            175
  CLUS_4                           22                            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(11Q23.1) MUTATED       10      5     19      6     10      3
  DEL PEAK 18(11Q23.1) WILD-TYPE    187     59     97    141     49     68
                                vv
clus                             CLUS_7
  DEL PEAK 18(11Q23.1) MUTATED       10
  DEL PEAK 18(11Q23.1) WILD-TYPE     83
D27V6, multiclass
        clus
vv       DEL PEAK 18(11Q23.1) MUTATED DEL PEAK 18(11Q23.1) WILD-TYPE
  CLUS_1                           10                            187
  CLUS_2                            5                             59
  CLUS_3                           19                             97
  CLUS_4                            6                            141
  CLUS_5                           10                             49
  CLUS_6                            3                             68
  CLUS_7                           10                             83
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11Q23.1) MUTATED       13     24      6     28
  DEL PEAK 18(11Q23.1) WILD-TYPE    109    175    279    245
D27V7, multiclass
        clus
vv       DEL PEAK 18(11Q23.1) MUTATED DEL PEAK 18(11Q23.1) WILD-TYPE
  CLUS_1                           13                            109
  CLUS_2                           24                            175
  CLUS_3                            6                            279
  CLUS_4                           28                            245
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(11Q23.1) MUTATED        8     16      4     14     17      1
  DEL PEAK 18(11Q23.1) WILD-TYPE     80     45    144     70    104     37
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 18(11Q23.1) MUTATED        1      3      7
  DEL PEAK 18(11Q23.1) WILD-TYPE    110     56    162
D27V8, multiclass
        clus
vv       DEL PEAK 18(11Q23.1) MUTATED DEL PEAK 18(11Q23.1) WILD-TYPE
  CLUS_1                            8                             80
  CLUS_2                           16                             45
  CLUS_3                            4                            144
  CLUS_4                           14                             70
  CLUS_5                           17                            104
  CLUS_6                            1                             37
  CLUS_7                            1                            110
  CLUS_8                            3                             56
  CLUS_9                            7                            162
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q23.1) MUTATED       34     21     16
  DEL PEAK 18(11Q23.1) WILD-TYPE    308    173    312
D27V9, multiclass
        clus
vv       DEL PEAK 18(11Q23.1) MUTATED DEL PEAK 18(11Q23.1) WILD-TYPE
  CLUS_1                           34                            308
  CLUS_2                           21                            173
  CLUS_3                           16                            312
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11Q23.1) MUTATED        8     43      4     16
  DEL PEAK 18(11Q23.1) WILD-TYPE     68    304    229    192
D27V10, multiclass
        clus
vv       DEL PEAK 18(11Q23.1) MUTATED DEL PEAK 18(11Q23.1) WILD-TYPE
  CLUS_1                            8                             68
  CLUS_2                           43                            304
  CLUS_3                            4                            229
  CLUS_4                           16                            192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11Q23.1) MUTATED        9      9     18      2
  DEL PEAK 18(11Q23.1) WILD-TYPE    147     60     47    120
D27V11, multiclass
        clus
vv       DEL PEAK 18(11Q23.1) MUTATED DEL PEAK 18(11Q23.1) WILD-TYPE
  CLUS_1                            9                            147
  CLUS_2                            9                             60
  CLUS_3                           18                             47
  CLUS_4                            2                            120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(11Q23.1) MUTATED        6     19      1      0      4      1
  DEL PEAK 18(11Q23.1) WILD-TYPE     85     64     48     20     42     76
                                vv
clus                             CLUS_7
  DEL PEAK 18(11Q23.1) MUTATED        7
  DEL PEAK 18(11Q23.1) WILD-TYPE     39
D27V12, multiclass
        clus
vv       DEL PEAK 18(11Q23.1) MUTATED DEL PEAK 18(11Q23.1) WILD-TYPE
  CLUS_1                            6                             85
  CLUS_2                           19                             64
  CLUS_3                            1                             48
  CLUS_4                            0                             20
  CLUS_5                            4                             42
  CLUS_6                            1                             76
  CLUS_7                            7                             39
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 19(13Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(13Q13.2) MUTATED        1      7      3      1
  DEL PEAK 19(13Q13.2) WILD-TYPE     30     18     10     16
D28V1, multiclass
        clus
vv       DEL PEAK 19(13Q13.2) MUTATED DEL PEAK 19(13Q13.2) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                            7                             18
  CLUS_3                            3                             10
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(13Q13.2) MUTATED        0      7      1      1      3
  DEL PEAK 19(13Q13.2) WILD-TYPE     20     17     17     12      8
D28V2, multiclass
        clus
vv       DEL PEAK 19(13Q13.2) MUTATED DEL PEAK 19(13Q13.2) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            7                             17
  CLUS_3                            1                             17
  CLUS_4                            1                             12
  CLUS_5                            3                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(13Q13.2) MUTATED       69     13     67
  DEL PEAK 19(13Q13.2) WILD-TYPE    259    187    287
D28V3, multiclass
        clus
vv       DEL PEAK 19(13Q13.2) MUTATED DEL PEAK 19(13Q13.2) WILD-TYPE
  CLUS_1                           69                            259
  CLUS_2                           13                            187
  CLUS_3                           67                            287
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(13Q13.2) MUTATED       51     29     10     20      7
  DEL PEAK 19(13Q13.2) WILD-TYPE     51     94    161     50    179
D28V4, multiclass
        clus
vv       DEL PEAK 19(13Q13.2) MUTATED DEL PEAK 19(13Q13.2) WILD-TYPE
  CLUS_1                           51                             51
  CLUS_2                           29                             94
  CLUS_3                           10                            161
  CLUS_4                           20                             50
  CLUS_5                            7                            179
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(13Q13.2) MUTATED       42     25     26     41
  DEL PEAK 19(13Q13.2) WILD-TYPE    140    156    161    156
D28V5, multiclass
        clus
vv       DEL PEAK 19(13Q13.2) MUTATED DEL PEAK 19(13Q13.2) WILD-TYPE
  CLUS_1                           42                            140
  CLUS_2                           25                            156
  CLUS_3                           26                            161
  CLUS_4                           41                            156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(13Q13.2) MUTATED       26     10     41     12     18      7
  DEL PEAK 19(13Q13.2) WILD-TYPE    171     54     75    135     41     64
                                vv
clus                             CLUS_7
  DEL PEAK 19(13Q13.2) MUTATED       20
  DEL PEAK 19(13Q13.2) WILD-TYPE     73
D28V6, multiclass
        clus
vv       DEL PEAK 19(13Q13.2) MUTATED DEL PEAK 19(13Q13.2) WILD-TYPE
  CLUS_1                           26                            171
  CLUS_2                           10                             54
  CLUS_3                           41                             75
  CLUS_4                           12                            135
  CLUS_5                           18                             41
  CLUS_6                            7                             64
  CLUS_7                           20                             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(13Q13.2) MUTATED       56     57     20     16
  DEL PEAK 19(13Q13.2) WILD-TYPE     66    142    265    257
D28V7, multiclass
        clus
vv       DEL PEAK 19(13Q13.2) MUTATED DEL PEAK 19(13Q13.2) WILD-TYPE
  CLUS_1                           56                             66
  CLUS_2                           57                            142
  CLUS_3                           20                            265
  CLUS_4                           16                            257
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(13Q13.2) MUTATED       52     19      6      9     39      8
  DEL PEAK 19(13Q13.2) WILD-TYPE     36     42    142     75     82     30
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 19(13Q13.2) MUTATED       11      3      2
  DEL PEAK 19(13Q13.2) WILD-TYPE    100     56    167
D28V8, multiclass
        clus
vv       DEL PEAK 19(13Q13.2) MUTATED DEL PEAK 19(13Q13.2) WILD-TYPE
  CLUS_1                           52                             36
  CLUS_2                           19                             42
  CLUS_3                            6                            142
  CLUS_4                            9                             75
  CLUS_5                           39                             82
  CLUS_6                            8                             30
  CLUS_7                           11                            100
  CLUS_8                            3                             56
  CLUS_9                            2                            167
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(13Q13.2) MUTATED       69     40     38
  DEL PEAK 19(13Q13.2) WILD-TYPE    273    154    290
D28V9, multiclass
        clus
vv       DEL PEAK 19(13Q13.2) MUTATED DEL PEAK 19(13Q13.2) WILD-TYPE
  CLUS_1                           69                            273
  CLUS_2                           40                            154
  CLUS_3                           38                            290
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(13Q13.2) MUTATED       50     69     17     11
  DEL PEAK 19(13Q13.2) WILD-TYPE     26    278    216    197
D28V10, multiclass
        clus
vv       DEL PEAK 19(13Q13.2) MUTATED DEL PEAK 19(13Q13.2) WILD-TYPE
  CLUS_1                           50                             26
  CLUS_2                           69                            278
  CLUS_3                           17                            216
  CLUS_4                           11                            197
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(13Q13.2) MUTATED        6     33     19     11
  DEL PEAK 19(13Q13.2) WILD-TYPE    150     36     46    111
D28V11, multiclass
        clus
vv       DEL PEAK 19(13Q13.2) MUTATED DEL PEAK 19(13Q13.2) WILD-TYPE
  CLUS_1                            6                            150
  CLUS_2                           33                             36
  CLUS_3                           19                             46
  CLUS_4                           11                            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(13Q13.2) MUTATED        3     20      1      1      9      4
  DEL PEAK 19(13Q13.2) WILD-TYPE     88     63     48     19     37     73
                                vv
clus                             CLUS_7
  DEL PEAK 19(13Q13.2) MUTATED       31
  DEL PEAK 19(13Q13.2) WILD-TYPE     15
D28V12, multiclass
        clus
vv       DEL PEAK 19(13Q13.2) MUTATED DEL PEAK 19(13Q13.2) WILD-TYPE
  CLUS_1                            3                             88
  CLUS_2                           20                             63
  CLUS_3                            1                             48
  CLUS_4                            1                             19
  CLUS_5                            9                             37
  CLUS_6                            4                             73
  CLUS_7                           31                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 20(14Q31.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(14Q31.1) MUTATED        9     20      2      4
  DEL PEAK 20(14Q31.1) WILD-TYPE     22      5     11     13
D29V1, multiclass
        clus
vv       DEL PEAK 20(14Q31.1) MUTATED DEL PEAK 20(14Q31.1) WILD-TYPE
  CLUS_1                            9                             22
  CLUS_2                           20                              5
  CLUS_3                            2                             11
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(14Q31.1) MUTATED        5     19      4      5      2
  DEL PEAK 20(14Q31.1) WILD-TYPE     15      5     14      8      9
D29V2, multiclass
        clus
vv       DEL PEAK 20(14Q31.1) MUTATED DEL PEAK 20(14Q31.1) WILD-TYPE
  CLUS_1                            5                             15
  CLUS_2                           19                              5
  CLUS_3                            4                             14
  CLUS_4                            5                              8
  CLUS_5                            2                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(14Q31.1) MUTATED       44     33    202
  DEL PEAK 20(14Q31.1) WILD-TYPE    284    167    152
D29V3, multiclass
        clus
vv       DEL PEAK 20(14Q31.1) MUTATED DEL PEAK 20(14Q31.1) WILD-TYPE
  CLUS_1                           44                            284
  CLUS_2                           33                            167
  CLUS_3                          202                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(14Q31.1) MUTATED        5     57     60     42     16
  DEL PEAK 20(14Q31.1) WILD-TYPE     97     66    111     28    170
D29V4, multiclass
        clus
vv       DEL PEAK 20(14Q31.1) MUTATED DEL PEAK 20(14Q31.1) WILD-TYPE
  CLUS_1                            5                             97
  CLUS_2                           57                             66
  CLUS_3                           60                            111
  CLUS_4                           42                             28
  CLUS_5                           16                            170
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(14Q31.1) MUTATED       62     61     34     88
  DEL PEAK 20(14Q31.1) WILD-TYPE    120    120    153    109
D29V5, multiclass
        clus
vv       DEL PEAK 20(14Q31.1) MUTATED DEL PEAK 20(14Q31.1) WILD-TYPE
  CLUS_1                           62                            120
  CLUS_2                           61                            120
  CLUS_3                           34                            153
  CLUS_4                           88                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(14Q31.1) MUTATED       65      3     46     43     32     18
  DEL PEAK 20(14Q31.1) WILD-TYPE    132     61     70    104     27     53
                                vv
clus                             CLUS_7
  DEL PEAK 20(14Q31.1) MUTATED       38
  DEL PEAK 20(14Q31.1) WILD-TYPE     55
D29V6, multiclass
        clus
vv       DEL PEAK 20(14Q31.1) MUTATED DEL PEAK 20(14Q31.1) WILD-TYPE
  CLUS_1                           65                            132
  CLUS_2                            3                             61
  CLUS_3                           46                             70
  CLUS_4                           43                            104
  CLUS_5                           32                             27
  CLUS_6                           18                             53
  CLUS_7                           38                             55
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(14Q31.1) MUTATED       12    121     97     46
  DEL PEAK 20(14Q31.1) WILD-TYPE    110     78    188    227
D29V7, multiclass
        clus
vv       DEL PEAK 20(14Q31.1) MUTATED DEL PEAK 20(14Q31.1) WILD-TYPE
  CLUS_1                           12                            110
  CLUS_2                          121                             78
  CLUS_3                           97                            188
  CLUS_4                           46                            227
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(14Q31.1) MUTATED        5     22     50     18     76     34
  DEL PEAK 20(14Q31.1) WILD-TYPE     83     39     98     66     45      4
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 20(14Q31.1) MUTATED       33     27     11
  DEL PEAK 20(14Q31.1) WILD-TYPE     78     32    158
D29V8, multiclass
        clus
vv       DEL PEAK 20(14Q31.1) MUTATED DEL PEAK 20(14Q31.1) WILD-TYPE
  CLUS_1                            5                             83
  CLUS_2                           22                             39
  CLUS_3                           50                             98
  CLUS_4                           18                             66
  CLUS_5                           76                             45
  CLUS_6                           34                              4
  CLUS_7                           33                             78
  CLUS_8                           27                             32
  CLUS_9                           11                            158
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(14Q31.1) MUTATED       47     80    146
  DEL PEAK 20(14Q31.1) WILD-TYPE    295    114    182
D29V9, multiclass
        clus
vv       DEL PEAK 20(14Q31.1) MUTATED DEL PEAK 20(14Q31.1) WILD-TYPE
  CLUS_1                           47                            295
  CLUS_2                           80                            114
  CLUS_3                          146                            182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(14Q31.1) MUTATED        4    165     83     21
  DEL PEAK 20(14Q31.1) WILD-TYPE     72    182    150    187
D29V10, multiclass
        clus
vv       DEL PEAK 20(14Q31.1) MUTATED DEL PEAK 20(14Q31.1) WILD-TYPE
  CLUS_1                            4                             72
  CLUS_2                          165                            182
  CLUS_3                           83                            150
  CLUS_4                           21                            187
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(14Q31.1) MUTATED       17      5     22     49
  DEL PEAK 20(14Q31.1) WILD-TYPE    139     64     43     73
D29V11, multiclass
        clus
vv       DEL PEAK 20(14Q31.1) MUTATED DEL PEAK 20(14Q31.1) WILD-TYPE
  CLUS_1                           17                            139
  CLUS_2                            5                             64
  CLUS_3                           22                             43
  CLUS_4                           49                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(14Q31.1) MUTATED        9     32      4      3     15     28
  DEL PEAK 20(14Q31.1) WILD-TYPE     82     51     45     17     31     49
                                vv
clus                             CLUS_7
  DEL PEAK 20(14Q31.1) MUTATED        2
  DEL PEAK 20(14Q31.1) WILD-TYPE     44
D29V12, multiclass
        clus
vv       DEL PEAK 20(14Q31.1) MUTATED DEL PEAK 20(14Q31.1) WILD-TYPE
  CLUS_1                            9                             82
  CLUS_2                           32                             51
  CLUS_3                            4                             45
  CLUS_4                            3                             17
  CLUS_5                           15                             31
  CLUS_6                           28                             49
  CLUS_7                            2                             44
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK 21(16Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.3) MUTATED        2      1      0      0
  DEL PEAK 21(16Q23.3) WILD-TYPE     29     24     13     17
D30V1, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            2                             29
  CLUS_2                            1                             24
  CLUS_3                            0                             13
  CLUS_4                            0                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(16Q23.3) MUTATED        1      1      0      1      0
  DEL PEAK 21(16Q23.3) WILD-TYPE     19     23     18     12     11
D30V2, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            1                             23
  CLUS_3                            0                             18
  CLUS_4                            1                             12
  CLUS_5                            0                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.3) MUTATED       12      6     19
  DEL PEAK 21(16Q23.3) WILD-TYPE    316    194    335
D30V3, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                           12                            316
  CLUS_2                            6                            194
  CLUS_3                           19                            335
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(16Q23.3) MUTATED        7      8      5      7      2
  DEL PEAK 21(16Q23.3) WILD-TYPE     95    115    166     63    184
D30V4, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            7                             95
  CLUS_2                            8                            115
  CLUS_3                            5                            166
  CLUS_4                            7                             63
  CLUS_5                            2                            184
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.3) MUTATED       12      6      6      9
  DEL PEAK 21(16Q23.3) WILD-TYPE    170    175    181    188
D30V5, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                           12                            170
  CLUS_2                            6                            175
  CLUS_3                            6                            181
  CLUS_4                            9                            188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(16Q23.3) MUTATED        5      2     10      7      3      2
  DEL PEAK 21(16Q23.3) WILD-TYPE    192     62    106    140     56     69
                                vv
clus                             CLUS_7
  DEL PEAK 21(16Q23.3) MUTATED        4
  DEL PEAK 21(16Q23.3) WILD-TYPE     89
D30V6, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            5                            192
  CLUS_2                            2                             62
  CLUS_3                           10                            106
  CLUS_4                            7                            140
  CLUS_5                            3                             56
  CLUS_6                            2                             69
  CLUS_7                            4                             89
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.3) MUTATED        9     13      8      7
  DEL PEAK 21(16Q23.3) WILD-TYPE    113    186    277    266
D30V7, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            9                            113
  CLUS_2                           13                            186
  CLUS_3                            8                            277
  CLUS_4                            7                            266
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(16Q23.3) MUTATED        5      8      5      6      9      1
  DEL PEAK 21(16Q23.3) WILD-TYPE     83     53    143     78    112     37
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 21(16Q23.3) MUTATED        3      0      0
  DEL PEAK 21(16Q23.3) WILD-TYPE    108     59    169
D30V8, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            5                             83
  CLUS_2                            8                             53
  CLUS_3                            5                            143
  CLUS_4                            6                             78
  CLUS_5                            9                            112
  CLUS_6                            1                             37
  CLUS_7                            3                            108
  CLUS_8                            0                             59
  CLUS_9                            0                            169
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.3) MUTATED       14     12     10
  DEL PEAK 21(16Q23.3) WILD-TYPE    328    182    318
D30V9, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                           14                            328
  CLUS_2                           12                            182
  CLUS_3                           10                            318
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.3) MUTATED        5     22      4      5
  DEL PEAK 21(16Q23.3) WILD-TYPE     71    325    229    203
D30V10, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            5                             71
  CLUS_2                           22                            325
  CLUS_3                            4                            229
  CLUS_4                            5                            203
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.3) MUTATED        3      7      7      6
  DEL PEAK 21(16Q23.3) WILD-TYPE    153     62     58    116
D30V11, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            3                            153
  CLUS_2                            7                             62
  CLUS_3                            7                             58
  CLUS_4                            6                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(16Q23.3) MUTATED        3      7      0      0      6      3
  DEL PEAK 21(16Q23.3) WILD-TYPE     88     76     49     20     40     74
                                vv
clus                             CLUS_7
  DEL PEAK 21(16Q23.3) MUTATED        4
  DEL PEAK 21(16Q23.3) WILD-TYPE     42
D30V12, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            3                             88
  CLUS_2                            7                             76
  CLUS_3                            0                             49
  CLUS_4                            0                             20
  CLUS_5                            6                             40
  CLUS_6                            3                             74
  CLUS_7                            4                             42
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 22(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(19P13.3) MUTATED        1      1      0      1
  DEL PEAK 22(19P13.3) WILD-TYPE     30     24     13     16
D31V1, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                            1                             24
  CLUS_3                            0                             13
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(19P13.3) MUTATED        0      1      1      1      0
  DEL PEAK 22(19P13.3) WILD-TYPE     20     23     17     12     11
D31V2, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            1                             23
  CLUS_3                            1                             17
  CLUS_4                            1                             12
  CLUS_5                            0                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(19P13.3) MUTATED       17      0     26
  DEL PEAK 22(19P13.3) WILD-TYPE    311    200    328
D31V3, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           17                            311
  CLUS_2                            0                            200
  CLUS_3                           26                            328
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(19P13.3) MUTATED        4      9      1     12     10
  DEL PEAK 22(19P13.3) WILD-TYPE     98    114    170     58    176
D31V4, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                            4                             98
  CLUS_2                            9                            114
  CLUS_3                            1                            170
  CLUS_4                           12                             58
  CLUS_5                           10                            176
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(19P13.3) MUTATED        9      5      6     14
  DEL PEAK 22(19P13.3) WILD-TYPE    173    176    181    183
D31V5, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                            9                            173
  CLUS_2                            5                            176
  CLUS_3                            6                            181
  CLUS_4                           14                            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(19P13.3) MUTATED        6      1     13      3      2      3
  DEL PEAK 22(19P13.3) WILD-TYPE    191     63    103    144     57     68
                                vv
clus                             CLUS_7
  DEL PEAK 22(19P13.3) MUTATED        6
  DEL PEAK 22(19P13.3) WILD-TYPE     87
D31V6, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                            6                            191
  CLUS_2                            1                             63
  CLUS_3                           13                            103
  CLUS_4                            3                            144
  CLUS_5                            2                             57
  CLUS_6                            3                             68
  CLUS_7                            6                             87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(19P13.3) MUTATED        3     14      2     24
  DEL PEAK 22(19P13.3) WILD-TYPE    119    185    283    249
D31V7, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                            3                            119
  CLUS_2                           14                            185
  CLUS_3                            2                            283
  CLUS_4                           24                            249
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(19P13.3) MUTATED        2     10      1     12      9      0
  DEL PEAK 22(19P13.3) WILD-TYPE     86     51    147     72    112     38
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 22(19P13.3) MUTATED        1      0      8
  DEL PEAK 22(19P13.3) WILD-TYPE    110     59    161
D31V8, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                            2                             86
  CLUS_2                           10                             51
  CLUS_3                            1                            147
  CLUS_4                           12                             72
  CLUS_5                            9                            112
  CLUS_6                            0                             38
  CLUS_7                            1                            110
  CLUS_8                            0                             59
  CLUS_9                            8                            161
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(19P13.3) MUTATED       24     12      7
  DEL PEAK 22(19P13.3) WILD-TYPE    318    182    321
D31V9, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           24                            318
  CLUS_2                           12                            182
  CLUS_3                            7                            321
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(19P13.3) MUTATED        2     27      2     12
  DEL PEAK 22(19P13.3) WILD-TYPE     74    320    231    196
D31V10, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                            2                             74
  CLUS_2                           27                            320
  CLUS_3                            2                            231
  CLUS_4                           12                            196
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(19P13.3) MUTATED       11      2     13      2
  DEL PEAK 22(19P13.3) WILD-TYPE    145     67     52    120
D31V11, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           11                            145
  CLUS_2                            2                             67
  CLUS_3                           13                             52
  CLUS_4                            2                            120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(19P13.3) MUTATED        7     12      1      1      4      1
  DEL PEAK 22(19P13.3) WILD-TYPE     84     71     48     19     42     76
                                vv
clus                             CLUS_7
  DEL PEAK 22(19P13.3) MUTATED        2
  DEL PEAK 22(19P13.3) WILD-TYPE     44
D31V12, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                            7                             84
  CLUS_2                           12                             71
  CLUS_3                            1                             48
  CLUS_4                            1                             19
  CLUS_5                            4                             42
  CLUS_6                            1                             76
  CLUS_7                            2                             44
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 23(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(XP22.2) MUTATED        3      2      5      2
  DEL PEAK 23(XP22.2) WILD-TYPE     28     23      8     15
D32V1, multiclass
        clus
vv       DEL PEAK 23(XP22.2) MUTATED DEL PEAK 23(XP22.2) WILD-TYPE
  CLUS_1                           3                            28
  CLUS_2                           2                            23
  CLUS_3                           5                             8
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(XP22.2) MUTATED        2      2      2      1      5
  DEL PEAK 23(XP22.2) WILD-TYPE     18     22     16     12      6
D32V2, multiclass
        clus
vv       DEL PEAK 23(XP22.2) MUTATED DEL PEAK 23(XP22.2) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           2                            22
  CLUS_3                           2                            16
  CLUS_4                           1                            12
  CLUS_5                           5                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP22.2) MUTATED       65     14     46
  DEL PEAK 23(XP22.2) WILD-TYPE    263    186    308
D32V3, multiclass
        clus
vv       DEL PEAK 23(XP22.2) MUTATED DEL PEAK 23(XP22.2) WILD-TYPE
  CLUS_1                          65                           263
  CLUS_2                          14                           186
  CLUS_3                          46                           308
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(XP22.2) MUTATED       48     12     16     19     10
  DEL PEAK 23(XP22.2) WILD-TYPE     54    111    155     51    176
D32V4, multiclass
        clus
vv       DEL PEAK 23(XP22.2) MUTATED DEL PEAK 23(XP22.2) WILD-TYPE
  CLUS_1                          48                            54
  CLUS_2                          12                           111
  CLUS_3                          16                           155
  CLUS_4                          19                            51
  CLUS_5                          10                           176
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(XP22.2) MUTATED       31     28     23     24
  DEL PEAK 23(XP22.2) WILD-TYPE    151    153    164    173
D32V5, multiclass
        clus
vv       DEL PEAK 23(XP22.2) MUTATED DEL PEAK 23(XP22.2) WILD-TYPE
  CLUS_1                          31                           151
  CLUS_2                          28                           153
  CLUS_3                          23                           164
  CLUS_4                          24                           173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(XP22.2) MUTATED       33      9     31     12      3      3
  DEL PEAK 23(XP22.2) WILD-TYPE    164     55     85    135     56     68
                               vv
clus                            CLUS_7
  DEL PEAK 23(XP22.2) MUTATED       15
  DEL PEAK 23(XP22.2) WILD-TYPE     78
D32V6, multiclass
        clus
vv       DEL PEAK 23(XP22.2) MUTATED DEL PEAK 23(XP22.2) WILD-TYPE
  CLUS_1                          33                           164
  CLUS_2                           9                            55
  CLUS_3                          31                            85
  CLUS_4                          12                           135
  CLUS_5                           3                            56
  CLUS_6                           3                            68
  CLUS_7                          15                            78
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(XP22.2) MUTATED       53     21     24     27
  DEL PEAK 23(XP22.2) WILD-TYPE     69    178    261    246
D32V7, multiclass
        clus
vv       DEL PEAK 23(XP22.2) MUTATED DEL PEAK 23(XP22.2) WILD-TYPE
  CLUS_1                          53                            69
  CLUS_2                          21                           178
  CLUS_3                          24                           261
  CLUS_4                          27                           246
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(XP22.2) MUTATED       50     14     11     16     10      5
  DEL PEAK 23(XP22.2) WILD-TYPE     38     47    137     68    111     33
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 23(XP22.2) MUTATED        7      7      5
  DEL PEAK 23(XP22.2) WILD-TYPE    104     52    164
D32V8, multiclass
        clus
vv       DEL PEAK 23(XP22.2) MUTATED DEL PEAK 23(XP22.2) WILD-TYPE
  CLUS_1                          50                            38
  CLUS_2                          14                            47
  CLUS_3                          11                           137
  CLUS_4                          16                            68
  CLUS_5                          10                           111
  CLUS_6                           5                            33
  CLUS_7                           7                           104
  CLUS_8                           7                            52
  CLUS_9                           5                           164
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP22.2) MUTATED       76     19     29
  DEL PEAK 23(XP22.2) WILD-TYPE    266    175    299
D32V9, multiclass
        clus
vv       DEL PEAK 23(XP22.2) MUTATED DEL PEAK 23(XP22.2) WILD-TYPE
  CLUS_1                          76                           266
  CLUS_2                          19                           175
  CLUS_3                          29                           299
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(XP22.2) MUTATED       48     45     17     14
  DEL PEAK 23(XP22.2) WILD-TYPE     28    302    216    194
D32V10, multiclass
        clus
vv       DEL PEAK 23(XP22.2) MUTATED DEL PEAK 23(XP22.2) WILD-TYPE
  CLUS_1                          48                            28
  CLUS_2                          45                           302
  CLUS_3                          17                           216
  CLUS_4                          14                           194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(XP22.2) MUTATED        8     34     12      9
  DEL PEAK 23(XP22.2) WILD-TYPE    148     35     53    113
D32V11, multiclass
        clus
vv       DEL PEAK 23(XP22.2) MUTATED DEL PEAK 23(XP22.2) WILD-TYPE
  CLUS_1                           8                           148
  CLUS_2                          34                            35
  CLUS_3                          12                            53
  CLUS_4                           9                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(XP22.2) MUTATED        5     19      0      3      4      3
  DEL PEAK 23(XP22.2) WILD-TYPE     86     64     49     17     42     74
                               vv
clus                            CLUS_7
  DEL PEAK 23(XP22.2) MUTATED       29
  DEL PEAK 23(XP22.2) WILD-TYPE     17
D32V12, multiclass
        clus
vv       DEL PEAK 23(XP22.2) MUTATED DEL PEAK 23(XP22.2) WILD-TYPE
  CLUS_1                           5                            86
  CLUS_2                          19                            64
  CLUS_3                           0                            49
  CLUS_4                           3                            17
  CLUS_5                           4                            42
  CLUS_6                           3                            74
  CLUS_7                          29                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
