[1] "ofn"        "-oTKIRC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRC-TP/22555002/KIRC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRC-TP/22531283/transformed.cor.cli.txt"

nPatients in clinical file=537, in cluster file=528, common to both=528
[1]  29 528
[1] "AMP PEAK  1(1Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE 
                           62                           466 
  AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE 
                           62                           466 
[1] "AMP PEAK  2(1Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                           62                           466 
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                           62                           466 
[1] "AMP PEAK  3(3Q26.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE 
                            87                            441 
  AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE 
                            87                            441 
[1] "AMP PEAK  4(4Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE 
                           16                           512 
  AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE 
                           16                           512 
[1] "AMP PEAK  5(5Q35.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE 
                          332                           196 
  AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE 
                          332                           196 
[1] "AMP PEAK  6(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7Q31.2) MUTATED AMP PEAK  6(7Q31.2) WILD-TYPE 
                          175                           353 
  AMP PEAK  6(7Q31.2) MUTATED AMP PEAK  6(7Q31.2) WILD-TYPE 
                          175                           353 
[1] "AMP PEAK  7(8Q24.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE 
                            79                            449 
  AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE 
                            79                            449 
[1] "AMP PEAK  8(10P14) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE 
                          20                          508 
  AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE 
                          20                          508 
[1] "AMP PEAK  9(XQ11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(XQ11.2) MUTATED AMP PEAK  9(XQ11.2) WILD-TYPE 
                           29                           499 
  AMP PEAK  9(XQ11.2) MUTATED AMP PEAK  9(XQ11.2) WILD-TYPE 
                           29                           499 
[1] "AMP PEAK 10(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(XQ28) MUTATED AMP PEAK 10(XQ28) WILD-TYPE 
                         37                         491 
  AMP PEAK 10(XQ28) MUTATED AMP PEAK 10(XQ28) WILD-TYPE 
                         37                         491 
[1] "DEL PEAK  1(1P36.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                            99                            429 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                            99                            429 
[1] "DEL PEAK  2(1P31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           77                           451 
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           77                           451 
[1] "DEL PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         44                         484 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         44                         484 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           50                           478 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           50                           478 
[1] "DEL PEAK  5(3P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE 
                          463                            65 
  DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE 
                          463                            65 
[1] "DEL PEAK  6(3P22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE 
                          465                            63 
  DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE 
                          465                            63 
[1] "DEL PEAK  7(3P12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P12.3) MUTATED DEL PEAK  7(3P12.3) WILD-TYPE 
                          339                           189 
  DEL PEAK  7(3P12.3) MUTATED DEL PEAK  7(3P12.3) WILD-TYPE 
                          339                           189 
[1] "DEL PEAK  8(3P12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE 
                          305                           223 
  DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE 
                          305                           223 
[1] "DEL PEAK  9(3P11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3P11.1) MUTATED DEL PEAK  9(3P11.1) WILD-TYPE 
                          237                           291 
  DEL PEAK  9(3P11.1) MUTATED DEL PEAK  9(3P11.1) WILD-TYPE 
                          237                           291 
[1] "DEL PEAK 10(3Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(3Q11.2) MUTATED DEL PEAK 10(3Q11.2) WILD-TYPE 
                          161                           367 
  DEL PEAK 10(3Q11.2) MUTATED DEL PEAK 10(3Q11.2) WILD-TYPE 
                          161                           367 
[1] "DEL PEAK 11(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE 
                           78                           450 
  DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE 
                           78                           450 
[1] "DEL PEAK 12(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE 
                        151                         377 
  DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE 
                        151                         377 
[1] "DEL PEAK 13(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                        151                         377 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                        151                         377 
[1] "DEL PEAK 14(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          154                           374 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          154                           374 
[1] "DEL PEAK 15(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                        152                         376 
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                        152                         376 
[1] "DEL PEAK 16(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          159                           369 
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          159                           369 
[1] "DEL PEAK 17(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                             96                             432 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                             96                             432 
[1] "DEL PEAK 18(13Q13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(13Q13.3) MUTATED DEL PEAK 18(13Q13.3) WILD-TYPE 
                            81                            447 
  DEL PEAK 18(13Q13.3) MUTATED DEL PEAK 18(13Q13.3) WILD-TYPE 
                            81                            447 
[1] "DEL PEAK 19(14Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(14Q31.1) MUTATED DEL PEAK 19(14Q31.1) WILD-TYPE 
                           228                            300 
  DEL PEAK 19(14Q31.1) MUTATED DEL PEAK 19(14Q31.1) WILD-TYPE 
                           228                            300 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 528 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 528 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
CN_CNMF, nv=6, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED        3      6      1
  AMP PEAK  1(1Q24.1) WILD-TYPE     28     19     13
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           3                            28
  CLUS_2                           6                            19
  CLUS_3                           1                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q24.1) MUTATED        1      3      0      3      1      1
  AMP PEAK  1(1Q24.1) WILD-TYPE     10      9      4      8     12      8
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q24.1) MUTATED        1
  AMP PEAK  1(1Q24.1) WILD-TYPE      9
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           3                             9
  CLUS_3                           0                             4
  CLUS_4                           3                             8
  CLUS_5                           1                            12
  CLUS_6                           1                             8
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q24.1) MUTATED        5      4     42      9      2      0
  AMP PEAK  1(1Q24.1) WILD-TYPE     56     76    114     73     78     69
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           5                            56
  CLUS_2                           4                            76
  CLUS_3                          42                           114
  CLUS_4                           9                            73
  CLUS_5                           2                            78
  CLUS_6                           0                            69
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q24.1) MUTATED        5     10     11      4
  AMP PEAK  1(1Q24.1) WILD-TYPE     62     60     85     77
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           5                            62
  CLUS_2                          10                            60
  CLUS_3                          11                            85
  CLUS_4                           4                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q24.1) MUTATED        7      9     17      9     11      3
  AMP PEAK  1(1Q24.1) WILD-TYPE     81     77     73     73     81     30
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           7                            81
  CLUS_2                           9                            77
  CLUS_3                          17                            73
  CLUS_4                           9                            73
  CLUS_5                          11                            81
  CLUS_6                           3                            30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q24.1) MUTATED       12     17     12     15
  AMP PEAK  1(1Q24.1) WILD-TYPE    123     95     73    124
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          12                           123
  CLUS_2                          17                            95
  CLUS_3                          12                            73
  CLUS_4                          15                           124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q24.1) MUTATED        5     15      7     32      1
  AMP PEAK  1(1Q24.1) WILD-TYPE     76    155     74    121     39
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           5                            76
  CLUS_2                          15                           155
  CLUS_3                           7                            74
  CLUS_4                          32                           121
  CLUS_5                           1                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q24.1) MUTATED        7      3     18     25      7      0
  AMP PEAK  1(1Q24.1) WILD-TYPE    110     30    165    107     28     25
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           7                           110
  CLUS_2                           3                            30
  CLUS_3                          18                           165
  CLUS_4                          25                           107
  CLUS_5                           7                            28
  CLUS_6                           0                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q24.1) MUTATED        4      9     16     26      5
  AMP PEAK  1(1Q24.1) WILD-TYPE     87     48    170     93     52
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           4                            87
  CLUS_2                           9                            48
  CLUS_3                          16                           170
  CLUS_4                          26                            93
  CLUS_5                           5                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED       23     18     19
  AMP PEAK  1(1Q24.1) WILD-TYPE    150    191    109
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          23                           150
  CLUS_2                          18                           191
  CLUS_3                          19                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q24.1) MUTATED        4      0      3      4
  AMP PEAK  1(1Q24.1) WILD-TYPE     35     21     41     34
D1V11, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           4                            35
  CLUS_2                           0                            21
  CLUS_3                           3                            41
  CLUS_4                           4                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q24.1) MUTATED        3      3      3      2
  AMP PEAK  1(1Q24.1) WILD-TYPE     37     49     25     20
D1V12, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           3                            37
  CLUS_2                           3                            49
  CLUS_3                           3                            25
  CLUS_4                           2                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        3      5      1
  AMP PEAK  2(1Q32.1) WILD-TYPE     28     20     13
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           3                            28
  CLUS_2                           5                            20
  CLUS_3                           1                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.1) MUTATED        1      3      0      2      1      1
  AMP PEAK  2(1Q32.1) WILD-TYPE     10      9      4      9     12      8
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q32.1) MUTATED        1
  AMP PEAK  2(1Q32.1) WILD-TYPE      9
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           3                             9
  CLUS_3                           0                             4
  CLUS_4                           2                             9
  CLUS_5                           1                            12
  CLUS_6                           1                             8
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.1) MUTATED        4      5     44      8      0      1
  AMP PEAK  2(1Q32.1) WILD-TYPE     57     75    112     74     80     68
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           4                            57
  CLUS_2                           5                            75
  CLUS_3                          44                           112
  CLUS_4                           8                            74
  CLUS_5                           0                            80
  CLUS_6                           1                            68
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        3     10     12      4
  AMP PEAK  2(1Q32.1) WILD-TYPE     64     60     84     77
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           3                            64
  CLUS_2                          10                            60
  CLUS_3                          12                            84
  CLUS_4                           4                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.1) MUTATED        6     11     18     10      9      3
  AMP PEAK  2(1Q32.1) WILD-TYPE     82     75     72     72     83     30
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           6                            82
  CLUS_2                          11                            75
  CLUS_3                          18                            72
  CLUS_4                          10                            72
  CLUS_5                           9                            83
  CLUS_6                           3                            30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED       10     19     12     16
  AMP PEAK  2(1Q32.1) WILD-TYPE    125     93     73    123
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          10                           125
  CLUS_2                          19                            93
  CLUS_3                          12                            73
  CLUS_4                          16                           123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q32.1) MUTATED        3     14      8     33      2
  AMP PEAK  2(1Q32.1) WILD-TYPE     78    156     73    120     38
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           3                            78
  CLUS_2                          14                           156
  CLUS_3                           8                            73
  CLUS_4                          33                           120
  CLUS_5                           2                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.1) MUTATED        7      2     18     26      7      0
  AMP PEAK  2(1Q32.1) WILD-TYPE    110     31    165    106     28     25
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           7                           110
  CLUS_2                           2                            31
  CLUS_3                          18                           165
  CLUS_4                          26                           106
  CLUS_5                           7                            28
  CLUS_6                           0                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q32.1) MUTATED        4      8     16     27      5
  AMP PEAK  2(1Q32.1) WILD-TYPE     87     49    170     92     52
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           4                            87
  CLUS_2                           8                            49
  CLUS_3                          16                           170
  CLUS_4                          27                            92
  CLUS_5                           5                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       24     18     18
  AMP PEAK  2(1Q32.1) WILD-TYPE    149    191    110
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          24                           149
  CLUS_2                          18                           191
  CLUS_3                          18                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        4      0      3      5
  AMP PEAK  2(1Q32.1) WILD-TYPE     35     21     41     33
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           4                            35
  CLUS_2                           0                            21
  CLUS_3                           3                            41
  CLUS_4                           5                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        3      5      3      1
  AMP PEAK  2(1Q32.1) WILD-TYPE     37     47     25     21
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           3                            37
  CLUS_2                           5                            47
  CLUS_3                           3                            25
  CLUS_4                           1                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3Q26.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED        2      7      2
  AMP PEAK  3(3Q26.32) WILD-TYPE     29     18     12
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            2                             29
  CLUS_2                            7                             18
  CLUS_3                            2                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.32) MUTATED        0      2      0      5      1      1
  AMP PEAK  3(3Q26.32) WILD-TYPE     11     10      4      6     12      8
                                vv
clus                             CLUS_7
  AMP PEAK  3(3Q26.32) MUTATED        2
  AMP PEAK  3(3Q26.32) WILD-TYPE      8
D3V2, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                            2                             10
  CLUS_3                            0                              4
  CLUS_4                            5                              6
  CLUS_5                            1                             12
  CLUS_6                            1                              8
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.32) MUTATED       11      8     40      5     17      6
  AMP PEAK  3(3Q26.32) WILD-TYPE     50     72    116     77     63     63
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           11                             50
  CLUS_2                            8                             72
  CLUS_3                           40                            116
  CLUS_4                            5                             77
  CLUS_5                           17                             63
  CLUS_6                            6                             63
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.32) MUTATED       10     13     27      1
  AMP PEAK  3(3Q26.32) WILD-TYPE     57     57     69     80
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                           13                             57
  CLUS_3                           27                             69
  CLUS_4                            1                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.32) MUTATED       19      9     32     10     10      1
  AMP PEAK  3(3Q26.32) WILD-TYPE     69     77     58     72     82     32
D3V5, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           19                             69
  CLUS_2                            9                             77
  CLUS_3                           32                             58
  CLUS_4                           10                             72
  CLUS_5                           10                             82
  CLUS_6                            1                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.32) MUTATED       13     23     29     16
  AMP PEAK  3(3Q26.32) WILD-TYPE    122     89     56    123
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           13                            122
  CLUS_2                           23                             89
  CLUS_3                           29                             56
  CLUS_4                           16                            123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3Q26.32) MUTATED       18     12     11     42      4
  AMP PEAK  3(3Q26.32) WILD-TYPE     63    158     70    111     36
D3V7, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           18                             63
  CLUS_2                           12                            158
  CLUS_3                           11                             70
  CLUS_4                           42                            111
  CLUS_5                            4                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.32) MUTATED       14      4     14     43      8      4
  AMP PEAK  3(3Q26.32) WILD-TYPE    103     29    169     89     27     21
D3V8, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           14                            103
  CLUS_2                            4                             29
  CLUS_3                           14                            169
  CLUS_4                           43                             89
  CLUS_5                            8                             27
  CLUS_6                            4                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3Q26.32) MUTATED       10     13     14     37     10
  AMP PEAK  3(3Q26.32) WILD-TYPE     81     44    172     82     47
D3V9, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           10                             81
  CLUS_2                           13                             44
  CLUS_3                           14                            172
  CLUS_4                           37                             82
  CLUS_5                           10                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED       35     17     32
  AMP PEAK  3(3Q26.32) WILD-TYPE    138    192     96
D3V10, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           35                            138
  CLUS_2                           17                            192
  CLUS_3                           32                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.32) MUTATED        2      1      3     12
  AMP PEAK  3(3Q26.32) WILD-TYPE     37     20     41     26
D3V11, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            2                             37
  CLUS_2                            1                             20
  CLUS_3                            3                             41
  CLUS_4                           12                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.32) MUTATED        4     10      1      3
  AMP PEAK  3(3Q26.32) WILD-TYPE     36     42     27     19
D3V12, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            4                             36
  CLUS_2                           10                             42
  CLUS_3                            1                             27
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(4Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        0      1      1
  AMP PEAK  4(4Q32.1) WILD-TYPE     31     24     13
D4V1, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  4(4Q32.1) MUTATED"
clus
  AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE 
                            2                            68 
                   TCGA-A3-3306                    TCGA-A3-3307 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3308                    TCGA-A3-3311 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3313                    TCGA-A3-3316 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3317                    TCGA-A3-3319 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3320                    TCGA-A3-3322 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3323                    TCGA-A3-3324 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3325                    TCGA-A3-3326 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3331                    TCGA-A3-3335 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3336                    TCGA-A3-3343 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3346                    TCGA-A3-3347 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3349                    TCGA-A3-3351 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3352                    TCGA-A3-3359 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3362                    TCGA-A3-3363 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3365                    TCGA-A3-3372 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3378                    TCGA-A3-3380 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3382                    TCGA-A3-3383 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3426                    TCGA-AK-3427 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3443                    TCGA-AK-3444 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3447                    TCGA-AK-3453 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3455                    TCGA-AK-3456 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3465                    TCGA-AS-3777 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AS-3778                    TCGA-B2-3923 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B2-3924                    TCGA-B2-4098 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B2-4099                    TCGA-B2-4102 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B8-4143                    TCGA-B8-4148 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B8-4151                    TCGA-B8-4154 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B8-4619                    TCGA-B8-4620 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4161                    TCGA-BP-4162 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4163                    TCGA-BP-4164 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4167                    TCGA-CJ-4634 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4636                    TCGA-CJ-4637 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4638                    TCGA-CJ-4639 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4640                    TCGA-CJ-4641 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4643                    TCGA-CJ-4644 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(4Q32.1) MUTATED        0      1      0      0      0      0
  AMP PEAK  4(4Q32.1) WILD-TYPE     11     11      4     11     13      9
                               vv
clus                            CLUS_7
  AMP PEAK  4(4Q32.1) MUTATED        1
  AMP PEAK  4(4Q32.1) WILD-TYPE      9
D4V2, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  4(4Q32.1) MUTATED"
clus
  AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE 
                            2                            68 
                   TCGA-A3-3306                    TCGA-A3-3307 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3308                    TCGA-A3-3311 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3313                    TCGA-A3-3316 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3317                    TCGA-A3-3319 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3320                    TCGA-A3-3322 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3323                    TCGA-A3-3324 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3325                    TCGA-A3-3326 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3331                    TCGA-A3-3335 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3336                    TCGA-A3-3343 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3346                    TCGA-A3-3347 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3349                    TCGA-A3-3351 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3352                    TCGA-A3-3359 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3362                    TCGA-A3-3363 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3365                    TCGA-A3-3372 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3378                    TCGA-A3-3380 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3382                    TCGA-A3-3383 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3426                    TCGA-AK-3427 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3443                    TCGA-AK-3444 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3447                    TCGA-AK-3453 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3455                    TCGA-AK-3456 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3465                    TCGA-AS-3777 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AS-3778                    TCGA-B2-3923 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B2-3924                    TCGA-B2-4098 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B2-4099                    TCGA-B2-4102 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B8-4143                    TCGA-B8-4148 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B8-4151                    TCGA-B8-4154 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B8-4619                    TCGA-B8-4620 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4161                    TCGA-BP-4162 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4163                    TCGA-BP-4164 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4167                    TCGA-CJ-4634 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4636                    TCGA-CJ-4637 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4638                    TCGA-CJ-4639 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4640                    TCGA-CJ-4641 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4643                    TCGA-CJ-4644 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(4Q32.1) MUTATED        2      3      5      0      0      6
  AMP PEAK  4(4Q32.1) WILD-TYPE     59     77    151     82     80     63
D4V3, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           2                            59
  CLUS_2                           3                            77
  CLUS_3                           5                           151
  CLUS_4                           0                            82
  CLUS_5                           0                            80
  CLUS_6                           6                            63
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4Q32.1) MUTATED        4      2      2      0
  AMP PEAK  4(4Q32.1) WILD-TYPE     63     68     94     81
D4V4, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           4                            63
  CLUS_2                           2                            68
  CLUS_3                           2                            94
  CLUS_4                           0                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(4Q32.1) MUTATED        4      1      3      0      3      0
  AMP PEAK  4(4Q32.1) WILD-TYPE     84     85     87     82     89     33
D4V5, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           4                            84
  CLUS_2                           1                            85
  CLUS_3                           3                            87
  CLUS_4                           0                            82
  CLUS_5                           3                            89
  CLUS_6                           0                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4Q32.1) MUTATED        2      3      5      1
  AMP PEAK  4(4Q32.1) WILD-TYPE    133    109     80    138
D4V6, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           2                           133
  CLUS_2                           3                           109
  CLUS_3                           5                            80
  CLUS_4                           1                           138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(4Q32.1) MUTATED        4      1      4      5      1
  AMP PEAK  4(4Q32.1) WILD-TYPE     77    169     77    148     39
D4V7, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           4                            77
  CLUS_2                           1                           169
  CLUS_3                           4                            77
  CLUS_4                           5                           148
  CLUS_5                           1                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(4Q32.1) MUTATED        5      0      2      4      0      4
  AMP PEAK  4(4Q32.1) WILD-TYPE    112     33    181    128     35     21
D4V8, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           5                           112
  CLUS_2                           0                            33
  CLUS_3                           2                           181
  CLUS_4                           4                           128
  CLUS_5                           0                            35
  CLUS_6                           4                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(4Q32.1) MUTATED        3      4      1      7      1
  AMP PEAK  4(4Q32.1) WILD-TYPE     88     53    185    112     56
D4V9, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           3                            88
  CLUS_2                           4                            53
  CLUS_3                           1                           185
  CLUS_4                           7                           112
  CLUS_5                           1                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        6      4      6
  AMP PEAK  4(4Q32.1) WILD-TYPE    167    205    122
D4V10, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           6                           167
  CLUS_2                           4                           205
  CLUS_3                           6                           122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4Q32.1) MUTATED        1      0      0      2
  AMP PEAK  4(4Q32.1) WILD-TYPE     38     21     44     36
D4V11, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           0                            21
  CLUS_3                           0                            44
  CLUS_4                           2                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4Q32.1) MUTATED        1      2      0      0
  AMP PEAK  4(4Q32.1) WILD-TYPE     39     50     28     22
D4V12, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           1                            39
  CLUS_2                           2                            50
  CLUS_3                           0                            28
  CLUS_4                           0                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(5Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED       19     15      3
  AMP PEAK  5(5Q35.1) WILD-TYPE     12     10     11
D5V1, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          19                            12
  CLUS_2                          15                            10
  CLUS_3                           3                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5Q35.1) MUTATED        8      5      0      9      7      5
  AMP PEAK  5(5Q35.1) WILD-TYPE      3      7      4      2      6      4
                               vv
clus                            CLUS_7
  AMP PEAK  5(5Q35.1) MUTATED        3
  AMP PEAK  5(5Q35.1) WILD-TYPE      7
D5V2, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                           8                             3
  CLUS_2                           5                             7
  CLUS_3                           0                             4
  CLUS_4                           9                             2
  CLUS_5                           7                             6
  CLUS_6                           5                             4
  CLUS_7                           3                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5Q35.1) MUTATED       61     48     92     47     56     28
  AMP PEAK  5(5Q35.1) WILD-TYPE      0     32     64     35     24     41
D5V3, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          61                             0
  CLUS_2                          48                            32
  CLUS_3                          92                            64
  CLUS_4                          47                            35
  CLUS_5                          56                            24
  CLUS_6                          28                            41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5Q35.1) MUTATED       45     40     63     48
  AMP PEAK  5(5Q35.1) WILD-TYPE     22     30     33     33
D5V4, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          45                            22
  CLUS_2                          40                            30
  CLUS_3                          63                            33
  CLUS_4                          48                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5Q35.1) MUTATED       54     49     56     63     55     24
  AMP PEAK  5(5Q35.1) WILD-TYPE     34     37     34     19     37      9
D5V5, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          54                            34
  CLUS_2                          49                            37
  CLUS_3                          56                            34
  CLUS_4                          63                            19
  CLUS_5                          55                            37
  CLUS_6                          24                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5Q35.1) MUTATED       84     68     43    106
  AMP PEAK  5(5Q35.1) WILD-TYPE     51     44     42     33
D5V6, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          84                            51
  CLUS_2                          68                            44
  CLUS_3                          43                            42
  CLUS_4                         106                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5Q35.1) MUTATED       34    113     45    111     27
  AMP PEAK  5(5Q35.1) WILD-TYPE     47     57     36     42     13
D5V7, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          34                            47
  CLUS_2                         113                            57
  CLUS_3                          45                            36
  CLUS_4                         111                            42
  CLUS_5                          27                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5Q35.1) MUTATED       79     15    121     84     26      5
  AMP PEAK  5(5Q35.1) WILD-TYPE     38     18     62     48      9     20
D5V8, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          79                            38
  CLUS_2                          15                            18
  CLUS_3                         121                            62
  CLUS_4                          84                            48
  CLUS_5                          26                             9
  CLUS_6                           5                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5Q35.1) MUTATED       54     42    125     66     36
  AMP PEAK  5(5Q35.1) WILD-TYPE     37     15     61     53     21
D5V9, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          54                            37
  CLUS_2                          42                            15
  CLUS_3                         125                            61
  CLUS_4                          66                            53
  CLUS_5                          36                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED      105    143     75
  AMP PEAK  5(5Q35.1) WILD-TYPE     68     66     53
D5V10, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                         105                            68
  CLUS_2                         143                            66
  CLUS_3                          75                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5Q35.1) MUTATED       24     14     31     28
  AMP PEAK  5(5Q35.1) WILD-TYPE     15      7     13     10
D5V11, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          24                            15
  CLUS_2                          14                             7
  CLUS_3                          31                            13
  CLUS_4                          28                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5Q35.1) MUTATED       25     36     21     15
  AMP PEAK  5(5Q35.1) WILD-TYPE     15     16      7      7
D5V12, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          25                            15
  CLUS_2                          36                            16
  CLUS_3                          21                             7
  CLUS_4                          15                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q31.2) MUTATED        9     10      6
  AMP PEAK  6(7Q31.2) WILD-TYPE     22     15      8
D6V1, multiclass
        clus
vv       AMP PEAK  6(7Q31.2) MUTATED AMP PEAK  6(7Q31.2) WILD-TYPE
  CLUS_1                           9                            22
  CLUS_2                          10                            15
  CLUS_3                           6                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7Q31.2) MUTATED        2      4      2      6      4      3
  AMP PEAK  6(7Q31.2) WILD-TYPE      9      8      2      5      9      6
                               vv
clus                            CLUS_7
  AMP PEAK  6(7Q31.2) MUTATED        4
  AMP PEAK  6(7Q31.2) WILD-TYPE      6
D6V2, multiclass
        clus
vv       AMP PEAK  6(7Q31.2) MUTATED AMP PEAK  6(7Q31.2) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           4                             8
  CLUS_3                           2                             2
  CLUS_4                           6                             5
  CLUS_5                           4                             9
  CLUS_6                           3                             6
  CLUS_7                           4                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7Q31.2) MUTATED       39     34     55     10     23     14
  AMP PEAK  6(7Q31.2) WILD-TYPE     22     46    101     72     57     55
D6V3, multiclass
        clus
vv       AMP PEAK  6(7Q31.2) MUTATED AMP PEAK  6(7Q31.2) WILD-TYPE
  CLUS_1                          39                            22
  CLUS_2                          34                            46
  CLUS_3                          55                           101
  CLUS_4                          10                            72
  CLUS_5                          23                            57
  CLUS_6                          14                            55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7Q31.2) MUTATED       12     24     35     20
  AMP PEAK  6(7Q31.2) WILD-TYPE     55     46     61     61
D6V4, multiclass
        clus
vv       AMP PEAK  6(7Q31.2) MUTATED AMP PEAK  6(7Q31.2) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                          24                            46
  CLUS_3                          35                            61
  CLUS_4                          20                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7Q31.2) MUTATED       32     21     52     23     23      5
  AMP PEAK  6(7Q31.2) WILD-TYPE     56     65     38     59     69     28
D6V5, multiclass
        clus
vv       AMP PEAK  6(7Q31.2) MUTATED AMP PEAK  6(7Q31.2) WILD-TYPE
  CLUS_1                          32                            56
  CLUS_2                          21                            65
  CLUS_3                          52                            38
  CLUS_4                          23                            59
  CLUS_5                          23                            69
  CLUS_6                           5                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7Q31.2) MUTATED       36     50     41     29
  AMP PEAK  6(7Q31.2) WILD-TYPE     99     62     44    110
D6V6, multiclass
        clus
vv       AMP PEAK  6(7Q31.2) MUTATED AMP PEAK  6(7Q31.2) WILD-TYPE
  CLUS_1                          36                            99
  CLUS_2                          50                            62
  CLUS_3                          41                            44
  CLUS_4                          29                           110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(7Q31.2) MUTATED       26     36     27     72     12
  AMP PEAK  6(7Q31.2) WILD-TYPE     55    134     54     81     28
D6V7, multiclass
        clus
vv       AMP PEAK  6(7Q31.2) MUTATED AMP PEAK  6(7Q31.2) WILD-TYPE
  CLUS_1                          26                            55
  CLUS_2                          36                           134
  CLUS_3                          27                            54
  CLUS_4                          72                            81
  CLUS_5                          12                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7Q31.2) MUTATED       38     11     43     61     14      6
  AMP PEAK  6(7Q31.2) WILD-TYPE     79     22    140     71     21     19
D6V8, multiclass
        clus
vv       AMP PEAK  6(7Q31.2) MUTATED AMP PEAK  6(7Q31.2) WILD-TYPE
  CLUS_1                          38                            79
  CLUS_2                          11                            22
  CLUS_3                          43                           140
  CLUS_4                          61                            71
  CLUS_5                          14                            21
  CLUS_6                           6                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(7Q31.2) MUTATED       27     27     53     51     14
  AMP PEAK  6(7Q31.2) WILD-TYPE     64     30    133     68     43
D6V9, multiclass
        clus
vv       AMP PEAK  6(7Q31.2) MUTATED AMP PEAK  6(7Q31.2) WILD-TYPE
  CLUS_1                          27                            64
  CLUS_2                          27                            30
  CLUS_3                          53                           133
  CLUS_4                          51                            68
  CLUS_5                          14                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q31.2) MUTATED       62     56     54
  AMP PEAK  6(7Q31.2) WILD-TYPE    111    153     74
D6V10, multiclass
        clus
vv       AMP PEAK  6(7Q31.2) MUTATED AMP PEAK  6(7Q31.2) WILD-TYPE
  CLUS_1                          62                           111
  CLUS_2                          56                           153
  CLUS_3                          54                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7Q31.2) MUTATED       11      7     10     18
  AMP PEAK  6(7Q31.2) WILD-TYPE     28     14     34     20
D6V11, multiclass
        clus
vv       AMP PEAK  6(7Q31.2) MUTATED AMP PEAK  6(7Q31.2) WILD-TYPE
  CLUS_1                          11                            28
  CLUS_2                           7                            14
  CLUS_3                          10                            34
  CLUS_4                          18                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7Q31.2) MUTATED       12     18     10      6
  AMP PEAK  6(7Q31.2) WILD-TYPE     28     34     18     16
D6V12, multiclass
        clus
vv       AMP PEAK  6(7Q31.2) MUTATED AMP PEAK  6(7Q31.2) WILD-TYPE
  CLUS_1                          12                            28
  CLUS_2                          18                            34
  CLUS_3                          10                            18
  CLUS_4                           6                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(8Q24.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED        1      3      2
  AMP PEAK  7(8Q24.22) WILD-TYPE     30     22     12
D7V1, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                            3                             22
  CLUS_3                            2                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q24.22) MUTATED        0      3      1      0      0      1
  AMP PEAK  7(8Q24.22) WILD-TYPE     11      9      3     11     13      8
                                vv
clus                             CLUS_7
  AMP PEAK  7(8Q24.22) MUTATED        1
  AMP PEAK  7(8Q24.22) WILD-TYPE      9
D7V2, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                            3                              9
  CLUS_3                            1                              3
  CLUS_4                            0                             11
  CLUS_5                            0                             13
  CLUS_6                            1                              8
  CLUS_7                            1                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q24.22) MUTATED        7     12     43      5     10      2
  AMP PEAK  7(8Q24.22) WILD-TYPE     54     68    113     77     70     67
D7V3, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            7                             54
  CLUS_2                           12                             68
  CLUS_3                           43                            113
  CLUS_4                            5                             77
  CLUS_5                           10                             70
  CLUS_6                            2                             67
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q24.22) MUTATED        4     15     31      3
  AMP PEAK  7(8Q24.22) WILD-TYPE     63     55     65     78
D7V4, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            4                             63
  CLUS_2                           15                             55
  CLUS_3                           31                             65
  CLUS_4                            3                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q24.22) MUTATED       13      5     36      7     12      1
  AMP PEAK  7(8Q24.22) WILD-TYPE     75     81     54     75     80     32
D7V5, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           13                             75
  CLUS_2                            5                             81
  CLUS_3                           36                             54
  CLUS_4                            7                             75
  CLUS_5                           12                             80
  CLUS_6                            1                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q24.22) MUTATED        9     31     25      9
  AMP PEAK  7(8Q24.22) WILD-TYPE    126     81     60    130
D7V6, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            9                            126
  CLUS_2                           31                             81
  CLUS_3                           25                             60
  CLUS_4                            9                            130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(8Q24.22) MUTATED        4      6     13     51      4
  AMP PEAK  7(8Q24.22) WILD-TYPE     77    164     68    102     36
D7V7, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            4                             77
  CLUS_2                            6                            164
  CLUS_3                           13                             68
  CLUS_4                           51                            102
  CLUS_5                            4                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q24.22) MUTATED        9      2      8     54      4      1
  AMP PEAK  7(8Q24.22) WILD-TYPE    108     31    175     78     31     24
D7V8, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            9                            108
  CLUS_2                            2                             31
  CLUS_3                            8                            175
  CLUS_4                           54                             78
  CLUS_5                            4                             31
  CLUS_6                            1                             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(8Q24.22) MUTATED       11     12     10     39      5
  AMP PEAK  7(8Q24.22) WILD-TYPE     80     45    176     80     52
D7V9, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           11                             80
  CLUS_2                           12                             45
  CLUS_3                           10                            176
  CLUS_4                           39                             80
  CLUS_5                            5                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED       41     13     23
  AMP PEAK  7(8Q24.22) WILD-TYPE    132    196    105
D7V10, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           41                            132
  CLUS_2                           13                            196
  CLUS_3                           23                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q24.22) MUTATED        3      1      0     15
  AMP PEAK  7(8Q24.22) WILD-TYPE     36     20     44     23
D7V11, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            1                             20
  CLUS_3                            0                             44
  CLUS_4                           15                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q24.22) MUTATED        3     12      2      2
  AMP PEAK  7(8Q24.22) WILD-TYPE     37     40     26     20
D7V12, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            3                             37
  CLUS_2                           12                             40
  CLUS_3                            2                             26
  CLUS_4                            2                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(10P14) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED        0      2      1
  AMP PEAK  8(10P14) WILD-TYPE     31     23     13
D8V1, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          0                           31
  CLUS_2                          2                           23
  CLUS_3                          1                           13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  8(10P14) MUTATED        0      1      0      1      0      0      1
  AMP PEAK  8(10P14) WILD-TYPE     11     11      4     10     13      9      9
D8V2, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          0                           11
  CLUS_2                          1                           11
  CLUS_3                          0                            4
  CLUS_4                          1                           10
  CLUS_5                          0                           13
  CLUS_6                          0                            9
  CLUS_7                          1                            9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(10P14) MUTATED        3      2     12      0      3      0
  AMP PEAK  8(10P14) WILD-TYPE     58     78    144     82     77     69
D8V3, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          3                           58
  CLUS_2                          2                           78
  CLUS_3                         12                          144
  CLUS_4                          0                           82
  CLUS_5                          3                           77
  CLUS_6                          0                           69
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(10P14) MUTATED        3      3      5      1
  AMP PEAK  8(10P14) WILD-TYPE     64     67     91     80
D8V4, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          3                           64
  CLUS_2                          3                           67
  CLUS_3                          5                           91
  CLUS_4                          1                           80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(10P14) MUTATED        1      2     10      2      2      2
  AMP PEAK  8(10P14) WILD-TYPE     87     84     80     80     90     31
D8V5, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          1                           87
  CLUS_2                          2                           84
  CLUS_3                         10                           80
  CLUS_4                          2                           80
  CLUS_5                          2                           90
  CLUS_6                          2                           31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(10P14) MUTATED        2      6      7      4
  AMP PEAK  8(10P14) WILD-TYPE    133    106     78    135
D8V6, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          2                          133
  CLUS_2                          6                          106
  CLUS_3                          7                           78
  CLUS_4                          4                          135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(10P14) MUTATED        3      1      3     13      0
  AMP PEAK  8(10P14) WILD-TYPE     78    169     78    140     40
D8V7, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          3                           78
  CLUS_2                          1                          169
  CLUS_3                          3                           78
  CLUS_4                         13                          140
  CLUS_5                          0                           40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(10P14) MUTATED        2      2      0     14      2      0
  AMP PEAK  8(10P14) WILD-TYPE    115     31    183    118     33     25
D8V8, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          2                          115
  CLUS_2                          2                           31
  CLUS_3                          0                          183
  CLUS_4                         14                          118
  CLUS_5                          2                           33
  CLUS_6                          0                           25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(10P14) MUTATED        5      3      3      8      1
  AMP PEAK  8(10P14) WILD-TYPE     86     54    183    111     56
D8V9, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          5                           86
  CLUS_2                          3                           54
  CLUS_3                          3                          183
  CLUS_4                          8                          111
  CLUS_5                          1                           56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED       11      3      6
  AMP PEAK  8(10P14) WILD-TYPE    162    206    122
D8V10, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                         11                          162
  CLUS_2                          3                          206
  CLUS_3                          6                          122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(10P14) MUTATED        1      0      1      1
  AMP PEAK  8(10P14) WILD-TYPE     38     21     43     37
D8V11, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          1                           38
  CLUS_2                          0                           21
  CLUS_3                          1                           43
  CLUS_4                          1                           37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(10P14) MUTATED        1      0      2      0
  AMP PEAK  8(10P14) WILD-TYPE     39     52     26     22
D8V12, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          1                           39
  CLUS_2                          0                           52
  CLUS_3                          2                           26
  CLUS_4                          0                           22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(XQ11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XQ11.2) MUTATED        2      0      2
  AMP PEAK  9(XQ11.2) WILD-TYPE     29     25     12
D9V1, multiclass
        clus
vv       AMP PEAK  9(XQ11.2) MUTATED AMP PEAK  9(XQ11.2) WILD-TYPE
  CLUS_1                           2                            29
  CLUS_2                           0                            25
  CLUS_3                           2                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(XQ11.2) MUTATED        0      0      1      0      2      0
  AMP PEAK  9(XQ11.2) WILD-TYPE     11     12      3     11     11      9
                               vv
clus                            CLUS_7
  AMP PEAK  9(XQ11.2) MUTATED        1
  AMP PEAK  9(XQ11.2) WILD-TYPE      9
D9V2, multiclass
        clus
vv       AMP PEAK  9(XQ11.2) MUTATED AMP PEAK  9(XQ11.2) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           0                            12
  CLUS_3                           1                             3
  CLUS_4                           0                            11
  CLUS_5                           2                            11
  CLUS_6                           0                             9
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(XQ11.2) MUTATED        9      5      5      2      3      5
  AMP PEAK  9(XQ11.2) WILD-TYPE     52     75    151     80     77     64
D9V3, multiclass
        clus
vv       AMP PEAK  9(XQ11.2) MUTATED AMP PEAK  9(XQ11.2) WILD-TYPE
  CLUS_1                           9                            52
  CLUS_2                           5                            75
  CLUS_3                           5                           151
  CLUS_4                           2                            80
  CLUS_5                           3                            77
  CLUS_6                           5                            64
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(XQ11.2) MUTATED        3      2      5      1
  AMP PEAK  9(XQ11.2) WILD-TYPE     64     68     91     80
D9V4, multiclass
        clus
vv       AMP PEAK  9(XQ11.2) MUTATED AMP PEAK  9(XQ11.2) WILD-TYPE
  CLUS_1                           3                            64
  CLUS_2                           2                            68
  CLUS_3                           5                            91
  CLUS_4                           1                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(XQ11.2) MUTATED        8      2      8      3      4      0
  AMP PEAK  9(XQ11.2) WILD-TYPE     80     84     82     79     88     33
D9V5, multiclass
        clus
vv       AMP PEAK  9(XQ11.2) MUTATED AMP PEAK  9(XQ11.2) WILD-TYPE
  CLUS_1                           8                            80
  CLUS_2                           2                            84
  CLUS_3                           8                            82
  CLUS_4                           3                            79
  CLUS_5                           4                            88
  CLUS_6                           0                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(XQ11.2) MUTATED        6      3     10      6
  AMP PEAK  9(XQ11.2) WILD-TYPE    129    109     75    133
D9V6, multiclass
        clus
vv       AMP PEAK  9(XQ11.2) MUTATED AMP PEAK  9(XQ11.2) WILD-TYPE
  CLUS_1                           6                           129
  CLUS_2                           3                           109
  CLUS_3                          10                            75
  CLUS_4                           6                           133
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(XQ11.2) MUTATED        8      8      1     11      1
  AMP PEAK  9(XQ11.2) WILD-TYPE     73    162     80    142     39
D9V7, multiclass
        clus
vv       AMP PEAK  9(XQ11.2) MUTATED AMP PEAK  9(XQ11.2) WILD-TYPE
  CLUS_1                           8                            73
  CLUS_2                           8                           162
  CLUS_3                           1                            80
  CLUS_4                          11                           142
  CLUS_5                           1                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(XQ11.2) MUTATED        4      3      8     12      1      1
  AMP PEAK  9(XQ11.2) WILD-TYPE    113     30    175    120     34     24
D9V8, multiclass
        clus
vv       AMP PEAK  9(XQ11.2) MUTATED AMP PEAK  9(XQ11.2) WILD-TYPE
  CLUS_1                           4                           113
  CLUS_2                           3                            30
  CLUS_3                           8                           175
  CLUS_4                          12                           120
  CLUS_5                           1                            34
  CLUS_6                           1                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(XQ11.2) MUTATED        6      3      7      9      3
  AMP PEAK  9(XQ11.2) WILD-TYPE     85     54    179    110     54
D9V9, multiclass
        clus
vv       AMP PEAK  9(XQ11.2) MUTATED AMP PEAK  9(XQ11.2) WILD-TYPE
  CLUS_1                           6                            85
  CLUS_2                           3                            54
  CLUS_3                           7                           179
  CLUS_4                           9                           110
  CLUS_5                           3                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XQ11.2) MUTATED       13      8      7
  AMP PEAK  9(XQ11.2) WILD-TYPE    160    201    121
D9V10, multiclass
        clus
vv       AMP PEAK  9(XQ11.2) MUTATED AMP PEAK  9(XQ11.2) WILD-TYPE
  CLUS_1                          13                           160
  CLUS_2                           8                           201
  CLUS_3                           7                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(XQ11.2) MUTATED        1      0      1      3
  AMP PEAK  9(XQ11.2) WILD-TYPE     38     21     43     35
D9V11, multiclass
        clus
vv       AMP PEAK  9(XQ11.2) MUTATED AMP PEAK  9(XQ11.2) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           0                            21
  CLUS_3                           1                            43
  CLUS_4                           3                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(XQ11.2) MUTATED        2      2      0      1
  AMP PEAK  9(XQ11.2) WILD-TYPE     38     50     28     21
D9V12, multiclass
        clus
vv       AMP PEAK  9(XQ11.2) MUTATED AMP PEAK  9(XQ11.2) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                           2                            50
  CLUS_3                           0                            28
  CLUS_4                           1                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XQ28) MUTATED        2      1      2
  AMP PEAK 10(XQ28) WILD-TYPE     29     24     12
D10V1, multiclass
        clus
vv       AMP PEAK 10(XQ28) MUTATED AMP PEAK 10(XQ28) WILD-TYPE
  CLUS_1                         2                          29
  CLUS_2                         1                          24
  CLUS_3                         2                          12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 10(XQ28) MUTATED        1      0      0      1      1      0      2
  AMP PEAK 10(XQ28) WILD-TYPE     10     12      4     10     12      9      8
D10V2, multiclass
        clus
vv       AMP PEAK 10(XQ28) MUTATED AMP PEAK 10(XQ28) WILD-TYPE
  CLUS_1                         1                          10
  CLUS_2                         0                          12
  CLUS_3                         0                           4
  CLUS_4                         1                          10
  CLUS_5                         1                          12
  CLUS_6                         0                           9
  CLUS_7                         2                           8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(XQ28) MUTATED        8      5     10      3      6      5
  AMP PEAK 10(XQ28) WILD-TYPE     53     75    146     79     74     64
D10V3, multiclass
        clus
vv       AMP PEAK 10(XQ28) MUTATED AMP PEAK 10(XQ28) WILD-TYPE
  CLUS_1                         8                          53
  CLUS_2                         5                          75
  CLUS_3                        10                         146
  CLUS_4                         3                          79
  CLUS_5                         6                          74
  CLUS_6                         5                          64
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(XQ28) MUTATED        5      4      9      4
  AMP PEAK 10(XQ28) WILD-TYPE     62     66     87     77
D10V4, multiclass
        clus
vv       AMP PEAK 10(XQ28) MUTATED AMP PEAK 10(XQ28) WILD-TYPE
  CLUS_1                         5                          62
  CLUS_2                         4                          66
  CLUS_3                         9                          87
  CLUS_4                         4                          77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(XQ28) MUTATED        8      1     11      8      6      0
  AMP PEAK 10(XQ28) WILD-TYPE     80     85     79     74     86     33
D10V5, multiclass
        clus
vv       AMP PEAK 10(XQ28) MUTATED AMP PEAK 10(XQ28) WILD-TYPE
  CLUS_1                         8                          80
  CLUS_2                         1                          85
  CLUS_3                        11                          79
  CLUS_4                         8                          74
  CLUS_5                         6                          86
  CLUS_6                         0                          33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(XQ28) MUTATED        8      6     12      8
  AMP PEAK 10(XQ28) WILD-TYPE    127    106     73    131
D10V6, multiclass
        clus
vv       AMP PEAK 10(XQ28) MUTATED AMP PEAK 10(XQ28) WILD-TYPE
  CLUS_1                         8                         127
  CLUS_2                         6                         106
  CLUS_3                        12                          73
  CLUS_4                         8                         131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(XQ28) MUTATED        7      8      4     15      2
  AMP PEAK 10(XQ28) WILD-TYPE     74    162     77    138     38
D10V7, multiclass
        clus
vv       AMP PEAK 10(XQ28) MUTATED AMP PEAK 10(XQ28) WILD-TYPE
  CLUS_1                         7                          74
  CLUS_2                         8                         162
  CLUS_3                         4                          77
  CLUS_4                        15                         138
  CLUS_5                         2                          38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(XQ28) MUTATED        5      2      9     14      6      0
  AMP PEAK 10(XQ28) WILD-TYPE    112     31    174    118     29     25
D10V8, multiclass
        clus
vv       AMP PEAK 10(XQ28) MUTATED AMP PEAK 10(XQ28) WILD-TYPE
  CLUS_1                         5                         112
  CLUS_2                         2                          31
  CLUS_3                         9                         174
  CLUS_4                        14                         118
  CLUS_5                         6                          29
  CLUS_6                         0                          25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(XQ28) MUTATED        7      9      8      8      4
  AMP PEAK 10(XQ28) WILD-TYPE     84     48    178    111     53
D10V9, multiclass
        clus
vv       AMP PEAK 10(XQ28) MUTATED AMP PEAK 10(XQ28) WILD-TYPE
  CLUS_1                         7                          84
  CLUS_2                         9                          48
  CLUS_3                         8                         178
  CLUS_4                         8                         111
  CLUS_5                         4                          53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XQ28) MUTATED       17     11      8
  AMP PEAK 10(XQ28) WILD-TYPE    156    198    120
D10V10, multiclass
        clus
vv       AMP PEAK 10(XQ28) MUTATED AMP PEAK 10(XQ28) WILD-TYPE
  CLUS_1                        17                         156
  CLUS_2                        11                         198
  CLUS_3                         8                         120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(XQ28) MUTATED        2      2      3      4
  AMP PEAK 10(XQ28) WILD-TYPE     37     19     41     34
D10V11, multiclass
        clus
vv       AMP PEAK 10(XQ28) MUTATED AMP PEAK 10(XQ28) WILD-TYPE
  CLUS_1                         2                          37
  CLUS_2                         2                          19
  CLUS_3                         3                          41
  CLUS_4                         4                          34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(XQ28) MUTATED        3      5      0      3
  AMP PEAK 10(XQ28) WILD-TYPE     37     47     28     19
D10V12, multiclass
        clus
vv       AMP PEAK 10(XQ28) MUTATED AMP PEAK 10(XQ28) WILD-TYPE
  CLUS_1                         3                          37
  CLUS_2                         5                          47
  CLUS_3                         0                          28
  CLUS_4                         3                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK  1(1P36.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED        2      7      8
  DEL PEAK  1(1P36.13) WILD-TYPE     29     18      6
D11V1, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            2                             29
  CLUS_2                            7                             18
  CLUS_3                            8                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED        0      2      2      4      1      1
  DEL PEAK  1(1P36.13) WILD-TYPE     11     10      2      7     12      8
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.13) MUTATED        7
  DEL PEAK  1(1P36.13) WILD-TYPE      3
D11V2, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                            2                             10
  CLUS_3                            2                              2
  CLUS_4                            4                              7
  CLUS_5                            1                             12
  CLUS_6                            1                              8
  CLUS_7                            7                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED        7     14     36     12     12     18
  DEL PEAK  1(1P36.13) WILD-TYPE     54     66    120     70     68     51
D11V3, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            7                             54
  CLUS_2                           14                             66
  CLUS_3                           36                            120
  CLUS_4                           12                             70
  CLUS_5                           12                             68
  CLUS_6                           18                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.13) MUTATED       11     16     20     11
  DEL PEAK  1(1P36.13) WILD-TYPE     56     54     76     70
D11V4, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           11                             56
  CLUS_2                           16                             54
  CLUS_3                           20                             76
  CLUS_4                           11                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED       24      6     27     17     10      5
  DEL PEAK  1(1P36.13) WILD-TYPE     64     80     63     65     82     28
D11V5, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           24                             64
  CLUS_2                            6                             80
  CLUS_3                           27                             63
  CLUS_4                           17                             65
  CLUS_5                           10                             82
  CLUS_6                            5                             28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.13) MUTATED       16     29     24     20
  DEL PEAK  1(1P36.13) WILD-TYPE    119     83     61    119
D11V6, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           16                            119
  CLUS_2                           29                             83
  CLUS_3                           24                             61
  CLUS_4                           20                            119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       26     22      5     41      5
  DEL PEAK  1(1P36.13) WILD-TYPE     55    148     76    112     35
D11V7, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           26                             55
  CLUS_2                           22                            148
  CLUS_3                            5                             76
  CLUS_4                           41                            112
  CLUS_5                            5                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED       11      6     23     38      9     12
  DEL PEAK  1(1P36.13) WILD-TYPE    106     27    160     94     26     13
D11V8, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           11                            106
  CLUS_2                            6                             27
  CLUS_3                           23                            160
  CLUS_4                           38                             94
  CLUS_5                            9                             26
  CLUS_6                           12                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       16      9     22     48      4
  DEL PEAK  1(1P36.13) WILD-TYPE     75     48    164     71     53
D11V9, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           16                             75
  CLUS_2                            9                             48
  CLUS_3                           22                            164
  CLUS_4                           48                             71
  CLUS_5                            4                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED       41     26     32
  DEL PEAK  1(1P36.13) WILD-TYPE    132    183     96
D11V10, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           41                            132
  CLUS_2                           26                            183
  CLUS_3                           32                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.13) MUTATED        8      3      3     10
  DEL PEAK  1(1P36.13) WILD-TYPE     31     18     41     28
D11V11, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            8                             31
  CLUS_2                            3                             18
  CLUS_3                            3                             41
  CLUS_4                           10                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.13) MUTATED        8     11      5      0
  DEL PEAK  1(1P36.13) WILD-TYPE     32     41     23     22
D11V12, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            8                             32
  CLUS_2                           11                             41
  CLUS_3                            5                             23
  CLUS_4                            0                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK  2(1P31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED        2      5      7
  DEL PEAK  2(1P31.1) WILD-TYPE     29     20      7
D12V1, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           2                            29
  CLUS_2                           5                            20
  CLUS_3                           7                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED        0      3      2      1      1      1
  DEL PEAK  2(1P31.1) WILD-TYPE     11      9      2     10     12      8
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P31.1) MUTATED        6
  DEL PEAK  2(1P31.1) WILD-TYPE      4
D12V2, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           3                             9
  CLUS_3                           2                             2
  CLUS_4                           1                            10
  CLUS_5                           1                            12
  CLUS_6                           1                             8
  CLUS_7                           6                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED        4      8     29      7     12     17
  DEL PEAK  2(1P31.1) WILD-TYPE     57     72    127     75     68     52
D12V3, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           4                            57
  CLUS_2                           8                            72
  CLUS_3                          29                           127
  CLUS_4                           7                            75
  CLUS_5                          12                            68
  CLUS_6                          17                            52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED        9      8     19      7
  DEL PEAK  2(1P31.1) WILD-TYPE     58     62     77     74
D12V4, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                           8                            62
  CLUS_3                          19                            77
  CLUS_4                           7                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED       20      7     21     11      5      4
  DEL PEAK  2(1P31.1) WILD-TYPE     68     79     69     71     87     29
D12V5, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          20                            68
  CLUS_2                           7                            79
  CLUS_3                          21                            69
  CLUS_4                          11                            71
  CLUS_5                           5                            87
  CLUS_6                           4                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED        6     23     21     18
  DEL PEAK  2(1P31.1) WILD-TYPE    129     89     64    121
D12V6, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           6                           129
  CLUS_2                          23                            89
  CLUS_3                          21                            64
  CLUS_4                          18                           121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P31.1) MUTATED       24     17      3     29      4
  DEL PEAK  2(1P31.1) WILD-TYPE     57    153     78    124     36
D12V7, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          24                            57
  CLUS_2                          17                           153
  CLUS_3                           3                            78
  CLUS_4                          29                           124
  CLUS_5                           4                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED       11      6     16     28      4     12
  DEL PEAK  2(1P31.1) WILD-TYPE    106     27    167    104     31     13
D12V8, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          11                           106
  CLUS_2                           6                            27
  CLUS_3                          16                           167
  CLUS_4                          28                           104
  CLUS_5                           4                            31
  CLUS_6                          12                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P31.1) MUTATED       10      6     18     39      4
  DEL PEAK  2(1P31.1) WILD-TYPE     81     51    168     80     53
D12V9, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          10                            81
  CLUS_2                           6                            51
  CLUS_3                          18                           168
  CLUS_4                          39                            80
  CLUS_5                           4                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       23     22     32
  DEL PEAK  2(1P31.1) WILD-TYPE    150    187     96
D12V10, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          23                           150
  CLUS_2                          22                           187
  CLUS_3                          32                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED        6      0      2      9
  DEL PEAK  2(1P31.1) WILD-TYPE     33     21     42     29
D12V11, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           6                            33
  CLUS_2                           0                            21
  CLUS_3                           2                            42
  CLUS_4                           9                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED        6      7      4      0
  DEL PEAK  2(1P31.1) WILD-TYPE     34     45     24     22
D12V12, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           6                            34
  CLUS_2                           7                            45
  CLUS_3                           4                            24
  CLUS_4                           0                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED        2      1      5
  DEL PEAK  3(1Q44) WILD-TYPE     29     24      9
D13V1, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         2                          29
  CLUS_2                         1                          24
  CLUS_3                         5                           9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(1Q44) MUTATED        0      1      0      0      1      1      5
  DEL PEAK  3(1Q44) WILD-TYPE     11     11      4     11     12      8      5
D13V2, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         0                          11
  CLUS_2                         1                          11
  CLUS_3                         0                           4
  CLUS_4                         0                          11
  CLUS_5                         1                          12
  CLUS_6                         1                           8
  CLUS_7                         5                           5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q44) MUTATED        1      5      6      5     12     15
  DEL PEAK  3(1Q44) WILD-TYPE     60     75    150     77     68     54
D13V3, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         1                          60
  CLUS_2                         5                          75
  CLUS_3                         6                         150
  CLUS_4                         5                          77
  CLUS_5                        12                          68
  CLUS_6                        15                          54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED       11      1      7      6
  DEL PEAK  3(1Q44) WILD-TYPE     56     69     89     75
D13V4, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        11                          56
  CLUS_2                         1                          69
  CLUS_3                         7                          89
  CLUS_4                         6                          75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q44) MUTATED       14      8      8      4      2      2
  DEL PEAK  3(1Q44) WILD-TYPE     74     78     82     78     90     31
D13V5, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        14                          74
  CLUS_2                         8                          78
  CLUS_3                         8                          82
  CLUS_4                         4                          78
  CLUS_5                         2                          90
  CLUS_6                         2                          31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED        5     10     15      8
  DEL PEAK  3(1Q44) WILD-TYPE    130    102     70    131
D13V6, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                         130
  CLUS_2                        10                         102
  CLUS_3                        15                          70
  CLUS_4                         8                         131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED       17     12      1     11      3
  DEL PEAK  3(1Q44) WILD-TYPE     64    158     80    142     37
D13V7, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        17                          64
  CLUS_2                        12                         158
  CLUS_3                         1                          80
  CLUS_4                        11                         142
  CLUS_5                         3                          37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q44) MUTATED        6      1     14     10      2     11
  DEL PEAK  3(1Q44) WILD-TYPE    111     32    169    122     33     14
D13V8, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         6                         111
  CLUS_2                         1                          32
  CLUS_3                        14                         169
  CLUS_4                        10                         122
  CLUS_5                         2                          33
  CLUS_6                        11                          14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED        7      3     13     18      3
  DEL PEAK  3(1Q44) WILD-TYPE     84     54    173    101     54
D13V9, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         7                          84
  CLUS_2                         3                          54
  CLUS_3                        13                         173
  CLUS_4                        18                         101
  CLUS_5                         3                          54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       11     14     19
  DEL PEAK  3(1Q44) WILD-TYPE    162    195    109
D13V10, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        11                         162
  CLUS_2                        14                         195
  CLUS_3                        19                         109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED        5      0      4      5
  DEL PEAK  3(1Q44) WILD-TYPE     34     21     40     33
D13V11, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                          34
  CLUS_2                         0                          21
  CLUS_3                         4                          40
  CLUS_4                         5                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED        5      5      2      2
  DEL PEAK  3(1Q44) WILD-TYPE     35     47     26     20
D13V12, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                          35
  CLUS_2                         5                          47
  CLUS_3                         2                          26
  CLUS_4                         2                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        1      4      6
  DEL PEAK  4(2Q37.3) WILD-TYPE     30     21      8
D14V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           1                            30
  CLUS_2                           4                            21
  CLUS_3                           6                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        0      4      0      0      1      0
  DEL PEAK  4(2Q37.3) WILD-TYPE     11      8      4     11     12      9
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        6
  DEL PEAK  4(2Q37.3) WILD-TYPE      4
D14V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           4                             8
  CLUS_3                           0                             4
  CLUS_4                           0                            11
  CLUS_5                           1                            12
  CLUS_6                           0                             9
  CLUS_7                           6                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        1      5     19     11      2     12
  DEL PEAK  4(2Q37.3) WILD-TYPE     60     75    137     71     78     57
D14V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           1                            60
  CLUS_2                           5                            75
  CLUS_3                          19                           137
  CLUS_4                          11                            71
  CLUS_5                           2                            78
  CLUS_6                          12                            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       11      5     11      2
  DEL PEAK  4(2Q37.3) WILD-TYPE     56     65     85     79
D14V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          11                            56
  CLUS_2                           5                            65
  CLUS_3                          11                            85
  CLUS_4                           2                            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       11      6     11      5      7      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     77     80     79     77     85     32
D14V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          11                            77
  CLUS_2                           6                            80
  CLUS_3                          11                            79
  CLUS_4                           5                            77
  CLUS_5                           7                            85
  CLUS_6                           1                            32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        8     12     11     10
  DEL PEAK  4(2Q37.3) WILD-TYPE    127    100     74    129
D14V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           8                           127
  CLUS_2                          12                           100
  CLUS_3                          11                            74
  CLUS_4                          10                           129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       14      6     14     14      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     67    164     67    139     39
D14V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          14                            67
  CLUS_2                           6                           164
  CLUS_3                          14                            67
  CLUS_4                          14                           139
  CLUS_5                           1                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       13      1      7     18      1      9
  DEL PEAK  4(2Q37.3) WILD-TYPE    104     32    176    114     34     16
D14V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          13                           104
  CLUS_2                           1                            32
  CLUS_3                           7                           176
  CLUS_4                          18                           114
  CLUS_5                           1                            34
  CLUS_6                           9                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED        6      7     11     17      7
  DEL PEAK  4(2Q37.3) WILD-TYPE     85     50    175    102     50
D14V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           6                            85
  CLUS_2                           7                            50
  CLUS_3                          11                           175
  CLUS_4                          17                           102
  CLUS_5                           7                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       16     13     19
  DEL PEAK  4(2Q37.3) WILD-TYPE    157    196    109
D14V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          16                           157
  CLUS_2                          13                           196
  CLUS_3                          19                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        6      1      2      2
  DEL PEAK  4(2Q37.3) WILD-TYPE     33     20     42     36
D14V11, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           6                            33
  CLUS_2                           1                            20
  CLUS_3                           2                            42
  CLUS_4                           2                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        6      3      1      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     34     49     27     21
D14V12, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           6                            34
  CLUS_2                           3                            49
  CLUS_3                           1                            27
  CLUS_4                           1                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK  5(3P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P25.3) MUTATED       30     23      4
  DEL PEAK  5(3P25.3) WILD-TYPE      1      2     10
D15V1, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          30                             1
  CLUS_2                          23                             2
  CLUS_3                           4                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P25.3) MUTATED       11     11      1     11     12      9
  DEL PEAK  5(3P25.3) WILD-TYPE      0      1      3      0      1      0
                               vv
clus                            CLUS_7
  DEL PEAK  5(3P25.3) MUTATED        2
  DEL PEAK  5(3P25.3) WILD-TYPE      8
D15V2, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          11                             0
  CLUS_2                          11                             1
  CLUS_3                           1                             3
  CLUS_4                          11                             0
  CLUS_5                          12                             1
  CLUS_6                           9                             0
  CLUS_7                           2                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P25.3) MUTATED       59     46    150     77     77     54
  DEL PEAK  5(3P25.3) WILD-TYPE      2     34      6      5      3     15
D15V3, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          59                             2
  CLUS_2                          46                            34
  CLUS_3                         150                             6
  CLUS_4                          77                             5
  CLUS_5                          77                             3
  CLUS_6                          54                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P25.3) MUTATED       49     57     93     79
  DEL PEAK  5(3P25.3) WILD-TYPE     18     13      3      2
D15V4, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          49                            18
  CLUS_2                          57                            13
  CLUS_3                          93                             3
  CLUS_4                          79                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P25.3) MUTATED       66     85     82     76     78     30
  DEL PEAK  5(3P25.3) WILD-TYPE     22      1      8      6     14      3
D15V5, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          66                            22
  CLUS_2                          85                             1
  CLUS_3                          82                             8
  CLUS_4                          76                             6
  CLUS_5                          78                            14
  CLUS_6                          30                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P25.3) MUTATED      114    107     62    134
  DEL PEAK  5(3P25.3) WILD-TYPE     21      5     23      5
D15V6, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                         114                            21
  CLUS_2                         107                             5
  CLUS_3                          62                            23
  CLUS_4                         134                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P25.3) MUTATED       41    167     74    140     38
  DEL PEAK  5(3P25.3) WILD-TYPE     40      3      7     13      2
D15V7, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          41                            40
  CLUS_2                         167                             3
  CLUS_3                          74                             7
  CLUS_4                         140                            13
  CLUS_5                          38                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P25.3) MUTATED      109     20    179    115     35      2
  DEL PEAK  5(3P25.3) WILD-TYPE      8     13      4     17      0     23
D15V8, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                         109                             8
  CLUS_2                          20                            13
  CLUS_3                         179                             4
  CLUS_4                         115                            17
  CLUS_5                          35                             0
  CLUS_6                           2                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P25.3) MUTATED       75     50    178     92     51
  DEL PEAK  5(3P25.3) WILD-TYPE     16      7      8     27      6
D15V9, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          75                            16
  CLUS_2                          50                             7
  CLUS_3                         178                             8
  CLUS_4                          92                            27
  CLUS_5                          51                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P25.3) MUTATED      142    202    102
  DEL PEAK  5(3P25.3) WILD-TYPE     31      7     26
D15V10, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                         142                            31
  CLUS_2                         202                             7
  CLUS_3                         102                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P25.3) MUTATED       27     16     43     30
  DEL PEAK  5(3P25.3) WILD-TYPE     12      5      1      8
D15V11, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          27                            12
  CLUS_2                          16                             5
  CLUS_3                          43                             1
  CLUS_4                          30                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P25.3) MUTATED       28     41     25     22
  DEL PEAK  5(3P25.3) WILD-TYPE     12     11      3      0
D15V12, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          28                            12
  CLUS_2                          41                            11
  CLUS_3                          25                             3
  CLUS_4                          22                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK  6(3P22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P22.2) MUTATED       30     23      4
  DEL PEAK  6(3P22.2) WILD-TYPE      1      2     10
D16V1, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          30                             1
  CLUS_2                          23                             2
  CLUS_3                           4                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P22.2) MUTATED       11     11      1     11     12      9
  DEL PEAK  6(3P22.2) WILD-TYPE      0      1      3      0      1      0
                               vv
clus                            CLUS_7
  DEL PEAK  6(3P22.2) MUTATED        2
  DEL PEAK  6(3P22.2) WILD-TYPE      8
D16V2, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          11                             0
  CLUS_2                          11                             1
  CLUS_3                           1                             3
  CLUS_4                          11                             0
  CLUS_5                          12                             1
  CLUS_6                           9                             0
  CLUS_7                           2                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P22.2) MUTATED       60     45    151     77     78     54
  DEL PEAK  6(3P22.2) WILD-TYPE      1     35      5      5      2     15
D16V3, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          60                             1
  CLUS_2                          45                            35
  CLUS_3                         151                             5
  CLUS_4                          77                             5
  CLUS_5                          78                             2
  CLUS_6                          54                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P22.2) MUTATED       48     57     93     79
  DEL PEAK  6(3P22.2) WILD-TYPE     19     13      3      2
D16V4, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          48                            19
  CLUS_2                          57                            13
  CLUS_3                          93                             3
  CLUS_4                          79                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P22.2) MUTATED       66     85     84     76     78     30
  DEL PEAK  6(3P22.2) WILD-TYPE     22      1      6      6     14      3
D16V5, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          66                            22
  CLUS_2                          85                             1
  CLUS_3                          84                             6
  CLUS_4                          76                             6
  CLUS_5                          78                            14
  CLUS_6                          30                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P22.2) MUTATED      114    107     65    133
  DEL PEAK  6(3P22.2) WILD-TYPE     21      5     20      6
D16V6, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                         114                            21
  CLUS_2                         107                             5
  CLUS_3                          65                            20
  CLUS_4                         133                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P22.2) MUTATED       41    167     74    141     39
  DEL PEAK  6(3P22.2) WILD-TYPE     40      3      7     12      1
D16V7, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          41                            40
  CLUS_2                         167                             3
  CLUS_3                          74                             7
  CLUS_4                         141                            12
  CLUS_5                          39                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P22.2) MUTATED      110     19    179    116     35      3
  DEL PEAK  6(3P22.2) WILD-TYPE      7     14      4     16      0     22
D16V8, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                         110                             7
  CLUS_2                          19                            14
  CLUS_3                         179                             4
  CLUS_4                         116                            16
  CLUS_5                          35                             0
  CLUS_6                           3                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P22.2) MUTATED       74     51    179     93     51
  DEL PEAK  6(3P22.2) WILD-TYPE     17      6      7     26      6
D16V9, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          74                            17
  CLUS_2                          51                             6
  CLUS_3                         179                             7
  CLUS_4                          93                            26
  CLUS_5                          51                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P22.2) MUTATED      142    202    104
  DEL PEAK  6(3P22.2) WILD-TYPE     31      7     24
D16V10, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                         142                            31
  CLUS_2                         202                             7
  CLUS_3                         104                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P22.2) MUTATED       29     15     43     30
  DEL PEAK  6(3P22.2) WILD-TYPE     10      6      1      8
D16V11, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          29                            10
  CLUS_2                          15                             6
  CLUS_3                          43                             1
  CLUS_4                          30                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P22.2) MUTATED       30     40     25     22
  DEL PEAK  6(3P22.2) WILD-TYPE     10     12      3      0
D16V12, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          30                            10
  CLUS_2                          40                            12
  CLUS_3                          25                             3
  CLUS_4                          22                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK  7(3P12.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P12.3) MUTATED       19     18      3
  DEL PEAK  7(3P12.3) WILD-TYPE     12      7     11
D17V1, multiclass
        clus
vv       DEL PEAK  7(3P12.3) MUTATED DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                          19                            12
  CLUS_2                          18                             7
  CLUS_3                           3                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P12.3) MUTATED        7      9      1      8      7      7
  DEL PEAK  7(3P12.3) WILD-TYPE      4      3      3      3      6      2
                               vv
clus                            CLUS_7
  DEL PEAK  7(3P12.3) MUTATED        1
  DEL PEAK  7(3P12.3) WILD-TYPE      9
D17V2, multiclass
        clus
vv       DEL PEAK  7(3P12.3) MUTATED DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                           7                             4
  CLUS_2                           9                             3
  CLUS_3                           1                             3
  CLUS_4                           8                             3
  CLUS_5                           7                             6
  CLUS_6                           7                             2
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P12.3) MUTATED       45     29    137     69      7     52
  DEL PEAK  7(3P12.3) WILD-TYPE     16     51     19     13     73     17
D17V3, multiclass
        clus
vv       DEL PEAK  7(3P12.3) MUTATED DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                          45                            16
  CLUS_2                          29                            51
  CLUS_3                         137                            19
  CLUS_4                          69                            13
  CLUS_5                           7                            73
  CLUS_6                          52                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P12.3) MUTATED       35     42     71     58
  DEL PEAK  7(3P12.3) WILD-TYPE     32     28     25     23
D17V4, multiclass
        clus
vv       DEL PEAK  7(3P12.3) MUTATED DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                          35                            32
  CLUS_2                          42                            28
  CLUS_3                          71                            25
  CLUS_4                          58                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P12.3) MUTATED       48     59     57     60     57     23
  DEL PEAK  7(3P12.3) WILD-TYPE     40     27     33     22     35     10
D17V5, multiclass
        clus
vv       DEL PEAK  7(3P12.3) MUTATED DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                          48                            40
  CLUS_2                          59                            27
  CLUS_3                          57                            33
  CLUS_4                          60                            22
  CLUS_5                          57                            35
  CLUS_6                          23                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P12.3) MUTATED       82     82     48     92
  DEL PEAK  7(3P12.3) WILD-TYPE     53     30     37     47
D17V6, multiclass
        clus
vv       DEL PEAK  7(3P12.3) MUTATED DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                          82                            53
  CLUS_2                          82                            30
  CLUS_3                          48                            37
  CLUS_4                          92                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P12.3) MUTATED       28    122     55    110     23
  DEL PEAK  7(3P12.3) WILD-TYPE     53     48     26     43     17
D17V7, multiclass
        clus
vv       DEL PEAK  7(3P12.3) MUTATED DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                          28                            53
  CLUS_2                         122                            48
  CLUS_3                          55                            26
  CLUS_4                         110                            43
  CLUS_5                          23                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P12.3) MUTATED       82     14    125     92     23      2
  DEL PEAK  7(3P12.3) WILD-TYPE     35     19     58     40     12     23
D17V8, multiclass
        clus
vv       DEL PEAK  7(3P12.3) MUTATED DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                          82                            35
  CLUS_2                          14                            19
  CLUS_3                         125                            58
  CLUS_4                          92                            40
  CLUS_5                          23                            12
  CLUS_6                           2                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P12.3) MUTATED       46     40    130     73     39
  DEL PEAK  7(3P12.3) WILD-TYPE     45     17     56     46     18
D17V9, multiclass
        clus
vv       DEL PEAK  7(3P12.3) MUTATED DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                          46                            45
  CLUS_2                          40                            17
  CLUS_3                         130                            56
  CLUS_4                          73                            46
  CLUS_5                          39                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P12.3) MUTATED      100    147     81
  DEL PEAK  7(3P12.3) WILD-TYPE     73     62     47
D17V10, multiclass
        clus
vv       DEL PEAK  7(3P12.3) MUTATED DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                         100                            73
  CLUS_2                         147                            62
  CLUS_3                          81                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P12.3) MUTATED       21      9     31     23
  DEL PEAK  7(3P12.3) WILD-TYPE     18     12     13     15
D17V11, multiclass
        clus
vv       DEL PEAK  7(3P12.3) MUTATED DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                          21                            18
  CLUS_2                           9                            12
  CLUS_3                          31                            13
  CLUS_4                          23                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P12.3) MUTATED       21     32     17     14
  DEL PEAK  7(3P12.3) WILD-TYPE     19     20     11      8
D17V12, multiclass
        clus
vv       DEL PEAK  7(3P12.3) MUTATED DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                          21                            19
  CLUS_2                          32                            20
  CLUS_3                          17                            11
  CLUS_4                          14                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK  8(3P12.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P12.2) MUTATED       17     13      3
  DEL PEAK  8(3P12.2) WILD-TYPE     14     12     11
D18V1, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          17                            14
  CLUS_2                          13                            12
  CLUS_3                           3                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P12.2) MUTATED        5      8      1      5      6      7
  DEL PEAK  8(3P12.2) WILD-TYPE      6      4      3      6      7      2
                               vv
clus                            CLUS_7
  DEL PEAK  8(3P12.2) MUTATED        1
  DEL PEAK  8(3P12.2) WILD-TYPE      9
D18V2, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                           5                             6
  CLUS_2                           8                             4
  CLUS_3                           1                             3
  CLUS_4                           5                             6
  CLUS_5                           6                             7
  CLUS_6                           7                             2
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P12.2) MUTATED       41     27    128     59      1     49
  DEL PEAK  8(3P12.2) WILD-TYPE     20     53     28     23     79     20
D18V3, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          41                            20
  CLUS_2                          27                            53
  CLUS_3                         128                            28
  CLUS_4                          59                            23
  CLUS_5                           1                            79
  CLUS_6                          49                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P12.2) MUTATED       33     41     63     51
  DEL PEAK  8(3P12.2) WILD-TYPE     34     29     33     30
D18V4, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          33                            34
  CLUS_2                          41                            29
  CLUS_3                          63                            33
  CLUS_4                          51                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P12.2) MUTATED       44     50     53     55     51     22
  DEL PEAK  8(3P12.2) WILD-TYPE     44     36     37     27     41     11
D18V5, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          44                            44
  CLUS_2                          50                            36
  CLUS_3                          53                            37
  CLUS_4                          55                            27
  CLUS_5                          51                            41
  CLUS_6                          22                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P12.2) MUTATED       75     74     44     82
  DEL PEAK  8(3P12.2) WILD-TYPE     60     38     41     57
D18V6, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          75                            60
  CLUS_2                          74                            38
  CLUS_3                          44                            41
  CLUS_4                          82                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P12.2) MUTATED       28    104     53     99     20
  DEL PEAK  8(3P12.2) WILD-TYPE     53     66     28     54     20
D18V7, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          28                            53
  CLUS_2                         104                            66
  CLUS_3                          53                            28
  CLUS_4                          99                            54
  CLUS_5                          20                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P12.2) MUTATED       75     13    109     84     21      2
  DEL PEAK  8(3P12.2) WILD-TYPE     42     20     74     48     14     23
D18V8, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          75                            42
  CLUS_2                          13                            20
  CLUS_3                         109                            74
  CLUS_4                          84                            48
  CLUS_5                          21                            14
  CLUS_6                           2                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P12.2) MUTATED       42     36    110     67     39
  DEL PEAK  8(3P12.2) WILD-TYPE     49     21     76     52     18
D18V9, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          42                            49
  CLUS_2                          36                            21
  CLUS_3                         110                            76
  CLUS_4                          67                            52
  CLUS_5                          39                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P12.2) MUTATED       91    127     76
  DEL PEAK  8(3P12.2) WILD-TYPE     82     82     52
D18V10, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          91                            82
  CLUS_2                         127                            82
  CLUS_3                          76                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P12.2) MUTATED       19      9     27     22
  DEL PEAK  8(3P12.2) WILD-TYPE     20     12     17     16
D18V11, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          19                            20
  CLUS_2                           9                            12
  CLUS_3                          27                            17
  CLUS_4                          22                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P12.2) MUTATED       19     30     17     11
  DEL PEAK  8(3P12.2) WILD-TYPE     21     22     11     11
D18V12, multiclass
        clus
vv       DEL PEAK  8(3P12.2) MUTATED DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                          19                            21
  CLUS_2                          30                            22
  CLUS_3                          17                            11
  CLUS_4                          11                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK  9(3P11.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P11.1) MUTATED       11     11      3
  DEL PEAK  9(3P11.1) WILD-TYPE     20     14     11
D19V1, multiclass
        clus
vv       DEL PEAK  9(3P11.1) MUTATED DEL PEAK  9(3P11.1) WILD-TYPE
  CLUS_1                          11                            20
  CLUS_2                          11                            14
  CLUS_3                           3                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P11.1) MUTATED        3      7      1      4      5      4
  DEL PEAK  9(3P11.1) WILD-TYPE      8      5      3      7      8      5
                               vv
clus                            CLUS_7
  DEL PEAK  9(3P11.1) MUTATED        1
  DEL PEAK  9(3P11.1) WILD-TYPE      9
D19V2, multiclass
        clus
vv       DEL PEAK  9(3P11.1) MUTATED DEL PEAK  9(3P11.1) WILD-TYPE
  CLUS_1                           3                             8
  CLUS_2                           7                             5
  CLUS_3                           1                             3
  CLUS_4                           4                             7
  CLUS_5                           5                             8
  CLUS_6                           4                             5
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P11.1) MUTATED       32     25    100     45      0     35
  DEL PEAK  9(3P11.1) WILD-TYPE     29     55     56     37     80     34
D19V3, multiclass
        clus
vv       DEL PEAK  9(3P11.1) MUTATED DEL PEAK  9(3P11.1) WILD-TYPE
  CLUS_1                          32                            29
  CLUS_2                          25                            55
  CLUS_3                         100                            56
  CLUS_4                          45                            37
  CLUS_5                           0                            80
  CLUS_6                          35                            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P11.1) MUTATED       22     31     50     43
  DEL PEAK  9(3P11.1) WILD-TYPE     45     39     46     38
D19V4, multiclass
        clus
vv       DEL PEAK  9(3P11.1) MUTATED DEL PEAK  9(3P11.1) WILD-TYPE
  CLUS_1                          22                            45
  CLUS_2                          31                            39
  CLUS_3                          50                            46
  CLUS_4                          43                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P11.1) MUTATED       36     39     38     44     43     14
  DEL PEAK  9(3P11.1) WILD-TYPE     52     47     52     38     49     19
D19V5, multiclass
        clus
vv       DEL PEAK  9(3P11.1) MUTATED DEL PEAK  9(3P11.1) WILD-TYPE
  CLUS_1                          36                            52
  CLUS_2                          39                            47
  CLUS_3                          38                            52
  CLUS_4                          44                            38
  CLUS_5                          43                            49
  CLUS_6                          14                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P11.1) MUTATED       61     59     34     60
  DEL PEAK  9(3P11.1) WILD-TYPE     74     53     51     79
D19V6, multiclass
        clus
vv       DEL PEAK  9(3P11.1) MUTATED DEL PEAK  9(3P11.1) WILD-TYPE
  CLUS_1                          61                            74
  CLUS_2                          59                            53
  CLUS_3                          34                            51
  CLUS_4                          60                            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P11.1) MUTATED       21     78     46     78     13
  DEL PEAK  9(3P11.1) WILD-TYPE     60     92     35     75     27
D19V7, multiclass
        clus
vv       DEL PEAK  9(3P11.1) MUTATED DEL PEAK  9(3P11.1) WILD-TYPE
  CLUS_1                          21                            60
  CLUS_2                          78                            92
  CLUS_3                          46                            35
  CLUS_4                          78                            75
  CLUS_5                          13                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P11.1) MUTATED       63      8     80     71     12      2
  DEL PEAK  9(3P11.1) WILD-TYPE     54     25    103     61     23     23
D19V8, multiclass
        clus
vv       DEL PEAK  9(3P11.1) MUTATED DEL PEAK  9(3P11.1) WILD-TYPE
  CLUS_1                          63                            54
  CLUS_2                           8                            25
  CLUS_3                          80                           103
  CLUS_4                          71                            61
  CLUS_5                          12                            23
  CLUS_6                           2                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P11.1) MUTATED       33     29     83     54     32
  DEL PEAK  9(3P11.1) WILD-TYPE     58     28    103     65     25
D19V9, multiclass
        clus
vv       DEL PEAK  9(3P11.1) MUTATED DEL PEAK  9(3P11.1) WILD-TYPE
  CLUS_1                          33                            58
  CLUS_2                          29                            28
  CLUS_3                          83                           103
  CLUS_4                          54                            65
  CLUS_5                          32                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P11.1) MUTATED       77     95     59
  DEL PEAK  9(3P11.1) WILD-TYPE     96    114     69
D19V10, multiclass
        clus
vv       DEL PEAK  9(3P11.1) MUTATED DEL PEAK  9(3P11.1) WILD-TYPE
  CLUS_1                          77                            96
  CLUS_2                          95                           114
  CLUS_3                          59                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P11.1) MUTATED       15      7     20     18
  DEL PEAK  9(3P11.1) WILD-TYPE     24     14     24     20
D19V11, multiclass
        clus
vv       DEL PEAK  9(3P11.1) MUTATED DEL PEAK  9(3P11.1) WILD-TYPE
  CLUS_1                          15                            24
  CLUS_2                           7                            14
  CLUS_3                          20                            24
  CLUS_4                          18                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P11.1) MUTATED       15     25     13      7
  DEL PEAK  9(3P11.1) WILD-TYPE     25     27     15     15
D19V12, multiclass
        clus
vv       DEL PEAK  9(3P11.1) MUTATED DEL PEAK  9(3P11.1) WILD-TYPE
  CLUS_1                          15                            25
  CLUS_2                          25                            27
  CLUS_3                          13                            15
  CLUS_4                           7                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 10(3Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q11.2) MUTATED       10      8      2
  DEL PEAK 10(3Q11.2) WILD-TYPE     21     17     12
D20V1, multiclass
        clus
vv       DEL PEAK 10(3Q11.2) MUTATED DEL PEAK 10(3Q11.2) WILD-TYPE
  CLUS_1                          10                            21
  CLUS_2                           8                            17
  CLUS_3                           2                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3Q11.2) MUTATED        3      6      1      2      4      4
  DEL PEAK 10(3Q11.2) WILD-TYPE      8      6      3      9      9      5
                               vv
clus                            CLUS_7
  DEL PEAK 10(3Q11.2) MUTATED        0
  DEL PEAK 10(3Q11.2) WILD-TYPE     10
D20V2, multiclass
        clus
vv       DEL PEAK 10(3Q11.2) MUTATED DEL PEAK 10(3Q11.2) WILD-TYPE
  CLUS_1                           3                             8
  CLUS_2                           6                             6
  CLUS_3                           1                             3
  CLUS_4                           2                             9
  CLUS_5                           4                             9
  CLUS_6                           4                             5
  CLUS_7                           0                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3Q11.2) MUTATED       21     22     58     39      1     20
  DEL PEAK 10(3Q11.2) WILD-TYPE     40     58     98     43     79     49
D20V3, multiclass
        clus
vv       DEL PEAK 10(3Q11.2) MUTATED DEL PEAK 10(3Q11.2) WILD-TYPE
  CLUS_1                          21                            40
  CLUS_2                          22                            58
  CLUS_3                          58                            98
  CLUS_4                          39                            43
  CLUS_5                           1                            79
  CLUS_6                          20                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q11.2) MUTATED       16     17     34     31
  DEL PEAK 10(3Q11.2) WILD-TYPE     51     53     62     50
D20V4, multiclass
        clus
vv       DEL PEAK 10(3Q11.2) MUTATED DEL PEAK 10(3Q11.2) WILD-TYPE
  CLUS_1                          16                            51
  CLUS_2                          17                            53
  CLUS_3                          34                            62
  CLUS_4                          31                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3Q11.2) MUTATED       26     24     27     30     31     10
  DEL PEAK 10(3Q11.2) WILD-TYPE     62     62     63     52     61     23
D20V5, multiclass
        clus
vv       DEL PEAK 10(3Q11.2) MUTATED DEL PEAK 10(3Q11.2) WILD-TYPE
  CLUS_1                          26                            62
  CLUS_2                          24                            62
  CLUS_3                          27                            63
  CLUS_4                          30                            52
  CLUS_5                          31                            61
  CLUS_6                          10                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q11.2) MUTATED       41     45     22     40
  DEL PEAK 10(3Q11.2) WILD-TYPE     94     67     63     99
D20V6, multiclass
        clus
vv       DEL PEAK 10(3Q11.2) MUTATED DEL PEAK 10(3Q11.2) WILD-TYPE
  CLUS_1                          41                            94
  CLUS_2                          45                            67
  CLUS_3                          22                            63
  CLUS_4                          40                            99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3Q11.2) MUTATED       15     49     39     48     10
  DEL PEAK 10(3Q11.2) WILD-TYPE     66    121     42    105     30
D20V7, multiclass
        clus
vv       DEL PEAK 10(3Q11.2) MUTATED DEL PEAK 10(3Q11.2) WILD-TYPE
  CLUS_1                          15                            66
  CLUS_2                          49                           121
  CLUS_3                          39                            42
  CLUS_4                          48                           105
  CLUS_5                          10                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3Q11.2) MUTATED       49      6     50     50      5      1
  DEL PEAK 10(3Q11.2) WILD-TYPE     68     27    133     82     30     24
D20V8, multiclass
        clus
vv       DEL PEAK 10(3Q11.2) MUTATED DEL PEAK 10(3Q11.2) WILD-TYPE
  CLUS_1                          49                            68
  CLUS_2                           6                            27
  CLUS_3                          50                           133
  CLUS_4                          50                            82
  CLUS_5                           5                            30
  CLUS_6                           1                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3Q11.2) MUTATED       19     11     59     41     26
  DEL PEAK 10(3Q11.2) WILD-TYPE     72     46    127     78     31
D20V9, multiclass
        clus
vv       DEL PEAK 10(3Q11.2) MUTATED DEL PEAK 10(3Q11.2) WILD-TYPE
  CLUS_1                          19                            72
  CLUS_2                          11                            46
  CLUS_3                          59                           127
  CLUS_4                          41                            78
  CLUS_5                          26                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q11.2) MUTATED       52     66     38
  DEL PEAK 10(3Q11.2) WILD-TYPE    121    143     90
D20V10, multiclass
        clus
vv       DEL PEAK 10(3Q11.2) MUTATED DEL PEAK 10(3Q11.2) WILD-TYPE
  CLUS_1                          52                           121
  CLUS_2                          66                           143
  CLUS_3                          38                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q11.2) MUTATED        9      4     14      9
  DEL PEAK 10(3Q11.2) WILD-TYPE     30     17     30     29
D20V11, multiclass
        clus
vv       DEL PEAK 10(3Q11.2) MUTATED DEL PEAK 10(3Q11.2) WILD-TYPE
  CLUS_1                           9                            30
  CLUS_2                           4                            17
  CLUS_3                          14                            30
  CLUS_4                           9                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q11.2) MUTATED        8     13      9      6
  DEL PEAK 10(3Q11.2) WILD-TYPE     32     39     19     16
D20V12, multiclass
        clus
vv       DEL PEAK 10(3Q11.2) MUTATED DEL PEAK 10(3Q11.2) WILD-TYPE
  CLUS_1                           8                            32
  CLUS_2                          13                            39
  CLUS_3                           9                            19
  CLUS_4                           6                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK 11(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED        6      5      0
  DEL PEAK 11(4Q34.3) WILD-TYPE     25     20     14
D21V1, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           6                            25
  CLUS_2                           5                            20
  CLUS_3                           0                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q34.3) MUTATED        1      3      0      2      4      1
  DEL PEAK 11(4Q34.3) WILD-TYPE     10      9      4      9      9      8
                               vv
clus                            CLUS_7
  DEL PEAK 11(4Q34.3) MUTATED        0
  DEL PEAK 11(4Q34.3) WILD-TYPE     10
D21V2, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           3                             9
  CLUS_3                           0                             4
  CLUS_4                           2                             9
  CLUS_5                           4                             9
  CLUS_6                           1                             8
  CLUS_7                           0                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q34.3) MUTATED       10     12     28     13     12      3
  DEL PEAK 11(4Q34.3) WILD-TYPE     51     68    128     69     68     66
D21V3, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          10                            51
  CLUS_2                          12                            68
  CLUS_3                          28                           128
  CLUS_4                          13                            69
  CLUS_5                          12                            68
  CLUS_6                           3                            66
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED        5     12     27      9
  DEL PEAK 11(4Q34.3) WILD-TYPE     62     58     69     72
D21V4, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           5                            62
  CLUS_2                          12                            58
  CLUS_3                          27                            69
  CLUS_4                           9                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q34.3) MUTATED        8     11     30     11     13      1
  DEL PEAK 11(4Q34.3) WILD-TYPE     80     75     60     71     79     32
D21V5, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           8                            80
  CLUS_2                          11                            75
  CLUS_3                          30                            60
  CLUS_4                          11                            71
  CLUS_5                          13                            79
  CLUS_6                           1                            32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED       12     25     20     17
  DEL PEAK 11(4Q34.3) WILD-TYPE    123     87     65    122
D21V6, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          12                           123
  CLUS_2                          25                            87
  CLUS_3                          20                            65
  CLUS_4                          17                           122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q34.3) MUTATED        6     18     12     34      8
  DEL PEAK 11(4Q34.3) WILD-TYPE     75    152     69    119     32
D21V7, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           6                            75
  CLUS_2                          18                           152
  CLUS_3                          12                            69
  CLUS_4                          34                           119
  CLUS_5                           8                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q34.3) MUTATED       15      1     18     38      6      0
  DEL PEAK 11(4Q34.3) WILD-TYPE    102     32    165     94     29     25
D21V8, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          15                           102
  CLUS_2                           1                            32
  CLUS_3                          18                           165
  CLUS_4                          38                            94
  CLUS_5                           6                            29
  CLUS_6                           0                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q34.3) MUTATED       12      7     23     25     10
  DEL PEAK 11(4Q34.3) WILD-TYPE     79     50    163     94     47
D21V9, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          12                            79
  CLUS_2                           7                            50
  CLUS_3                          23                           163
  CLUS_4                          25                            94
  CLUS_5                          10                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       37     26     14
  DEL PEAK 11(4Q34.3) WILD-TYPE    136    183    114
D21V10, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          37                           136
  CLUS_2                          26                           183
  CLUS_3                          14                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED        3      4      6      9
  DEL PEAK 11(4Q34.3) WILD-TYPE     36     17     38     29
D21V11, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           3                            36
  CLUS_2                           4                            17
  CLUS_3                           6                            38
  CLUS_4                           9                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED        3     15      4      0
  DEL PEAK 11(4Q34.3) WILD-TYPE     37     37     24     22
D21V12, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           3                            37
  CLUS_2                          15                            37
  CLUS_3                           4                            24
  CLUS_4                           0                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK 12(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED        7     12      8
  DEL PEAK 12(6Q26) WILD-TYPE     24     13      6
D22V1, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                         7                          24
  CLUS_2                        12                          13
  CLUS_3                         8                           6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 12(6Q26) MUTATED        2      7      1      5      3      2      7
  DEL PEAK 12(6Q26) WILD-TYPE      9      5      3      6     10      7      3
D22V2, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                         2                           9
  CLUS_2                         7                           5
  CLUS_3                         1                           3
  CLUS_4                         5                           6
  CLUS_5                         3                          10
  CLUS_6                         2                           7
  CLUS_7                         7                           3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q26) MUTATED        9     10    103      0     16     13
  DEL PEAK 12(6Q26) WILD-TYPE     52     70     53     82     64     56
D22V3, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                         9                          52
  CLUS_2                        10                          70
  CLUS_3                       103                          53
  CLUS_4                         0                          82
  CLUS_5                        16                          64
  CLUS_6                        13                          56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       14     17     32     17
  DEL PEAK 12(6Q26) WILD-TYPE     53     53     64     64
D22V4, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        14                          53
  CLUS_2                        17                          53
  CLUS_3                        32                          64
  CLUS_4                        17                          64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q26) MUTATED       23     27     41     29      9      6
  DEL PEAK 12(6Q26) WILD-TYPE     65     59     49     53     83     27
D22V5, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        23                          65
  CLUS_2                        27                          59
  CLUS_3                        41                          49
  CLUS_4                        29                          53
  CLUS_5                         9                          83
  CLUS_6                         6                          27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       17     48     34     36
  DEL PEAK 12(6Q26) WILD-TYPE    118     64     51    103
D22V6, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        17                         118
  CLUS_2                        48                          64
  CLUS_3                        34                          51
  CLUS_4                        36                         103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q26) MUTATED       22     42     14     63      8
  DEL PEAK 12(6Q26) WILD-TYPE     59    128     67     90     32
D22V7, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        22                          59
  CLUS_2                        42                         128
  CLUS_3                        14                          67
  CLUS_4                        63                          90
  CLUS_5                         8                          32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q26) MUTATED       26      6     40     58     10      9
  DEL PEAK 12(6Q26) WILD-TYPE     91     27    143     74     25     16
D22V8, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        26                          91
  CLUS_2                         6                          27
  CLUS_3                        40                         143
  CLUS_4                        58                          74
  CLUS_5                        10                          25
  CLUS_6                         9                          16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q26) MUTATED       26     19     39     49     14
  DEL PEAK 12(6Q26) WILD-TYPE     65     38    147     70     43
D22V9, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        26                          65
  CLUS_2                        19                          38
  CLUS_3                        39                         147
  CLUS_4                        49                          70
  CLUS_5                        14                          43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       56     44     47
  DEL PEAK 12(6Q26) WILD-TYPE    117    165     81
D22V10, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        56                         117
  CLUS_2                        44                         165
  CLUS_3                        47                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED        7      2     12     15
  DEL PEAK 12(6Q26) WILD-TYPE     32     19     32     23
D22V11, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                         7                          32
  CLUS_2                         2                          19
  CLUS_3                        12                          32
  CLUS_4                        15                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED        7     18      8      3
  DEL PEAK 12(6Q26) WILD-TYPE     33     34     20     19
D22V12, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                         7                          33
  CLUS_2                        18                          34
  CLUS_3                         8                          20
  CLUS_4                         3                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK 13(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED        7     12      8
  DEL PEAK 13(6Q26) WILD-TYPE     24     13      6
D23V1, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         7                          24
  CLUS_2                        12                          13
  CLUS_3                         8                           6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(6Q26) MUTATED        2      7      1      5      3      2      7
  DEL PEAK 13(6Q26) WILD-TYPE      9      5      3      6     10      7      3
D23V2, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         2                           9
  CLUS_2                         7                           5
  CLUS_3                         1                           3
  CLUS_4                         5                           6
  CLUS_5                         3                          10
  CLUS_6                         2                           7
  CLUS_7                         7                           3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q26) MUTATED        9     10    103      0     16     13
  DEL PEAK 13(6Q26) WILD-TYPE     52     70     53     82     64     56
D23V3, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         9                          52
  CLUS_2                        10                          70
  CLUS_3                       103                          53
  CLUS_4                         0                          82
  CLUS_5                        16                          64
  CLUS_6                        13                          56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       14     17     32     17
  DEL PEAK 13(6Q26) WILD-TYPE     53     53     64     64
D23V4, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        14                          53
  CLUS_2                        17                          53
  CLUS_3                        32                          64
  CLUS_4                        17                          64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q26) MUTATED       23     26     42     29      9      6
  DEL PEAK 13(6Q26) WILD-TYPE     65     60     48     53     83     27
D23V5, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        23                          65
  CLUS_2                        26                          60
  CLUS_3                        42                          48
  CLUS_4                        29                          53
  CLUS_5                         9                          83
  CLUS_6                         6                          27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       17     49     33     36
  DEL PEAK 13(6Q26) WILD-TYPE    118     63     52    103
D23V6, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        17                         118
  CLUS_2                        49                          63
  CLUS_3                        33                          52
  CLUS_4                        36                         103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED       21     42     14     64      8
  DEL PEAK 13(6Q26) WILD-TYPE     60    128     67     89     32
D23V7, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        21                          60
  CLUS_2                        42                         128
  CLUS_3                        14                          67
  CLUS_4                        64                          89
  CLUS_5                         8                          32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q26) MUTATED       26      6     40     59      9      9
  DEL PEAK 13(6Q26) WILD-TYPE     91     27    143     73     26     16
D23V8, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        26                          91
  CLUS_2                         6                          27
  CLUS_3                        40                         143
  CLUS_4                        59                          73
  CLUS_5                         9                          26
  CLUS_6                         9                          16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED       25     19     39     50     14
  DEL PEAK 13(6Q26) WILD-TYPE     66     38    147     69     43
D23V9, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        25                          66
  CLUS_2                        19                          38
  CLUS_3                        39                         147
  CLUS_4                        50                          69
  CLUS_5                        14                          43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       56     44     47
  DEL PEAK 13(6Q26) WILD-TYPE    117    165     81
D23V10, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        56                         117
  CLUS_2                        44                         165
  CLUS_3                        47                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        7      2     12     15
  DEL PEAK 13(6Q26) WILD-TYPE     32     19     32     23
D23V11, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         7                          32
  CLUS_2                         2                          19
  CLUS_3                        12                          32
  CLUS_4                        15                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        7     18      8      3
  DEL PEAK 13(6Q26) WILD-TYPE     33     34     20     19
D23V12, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         7                          33
  CLUS_2                        18                          34
  CLUS_3                         8                          20
  CLUS_4                         3                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK 14(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED        5      7      5
  DEL PEAK 14(8P23.2) WILD-TYPE     26     18      9
D24V1, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           5                            26
  CLUS_2                           7                            18
  CLUS_3                           5                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED        0      3      0      4      3      3
  DEL PEAK 14(8P23.2) WILD-TYPE     11      9      4      7     10      6
                               vv
clus                            CLUS_7
  DEL PEAK 14(8P23.2) MUTATED        4
  DEL PEAK 14(8P23.2) WILD-TYPE      6
D24V2, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           3                             9
  CLUS_3                           0                             4
  CLUS_4                           4                             7
  CLUS_5                           3                            10
  CLUS_6                           3                             6
  CLUS_7                           4                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED       15     24     62     15     19     19
  DEL PEAK 14(8P23.2) WILD-TYPE     46     56     94     67     61     50
D24V3, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          15                            46
  CLUS_2                          24                            56
  CLUS_3                          62                            94
  CLUS_4                          15                            67
  CLUS_5                          19                            61
  CLUS_6                          19                            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.2) MUTATED       14     21     33     19
  DEL PEAK 14(8P23.2) WILD-TYPE     53     49     63     62
D24V4, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          14                            53
  CLUS_2                          21                            49
  CLUS_3                          33                            63
  CLUS_4                          19                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED       24     15     38     27     26      8
  DEL PEAK 14(8P23.2) WILD-TYPE     64     71     52     55     66     25
D24V5, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          24                            64
  CLUS_2                          15                            71
  CLUS_3                          38                            52
  CLUS_4                          27                            55
  CLUS_5                          26                            66
  CLUS_6                           8                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.2) MUTATED       41     36     25     36
  DEL PEAK 14(8P23.2) WILD-TYPE     94     76     60    103
D24V6, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          41                            94
  CLUS_2                          36                            76
  CLUS_3                          25                            60
  CLUS_4                          36                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED       15     40     18     68     12
  DEL PEAK 14(8P23.2) WILD-TYPE     66    130     63     85     28
D24V7, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          15                            66
  CLUS_2                          40                           130
  CLUS_3                          18                            63
  CLUS_4                          68                            85
  CLUS_5                          12                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED       31      3     48     60      6      5
  DEL PEAK 14(8P23.2) WILD-TYPE     86     30    135     72     29     20
D24V8, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          31                            86
  CLUS_2                           3                            30
  CLUS_3                          48                           135
  CLUS_4                          60                            72
  CLUS_5                           6                            29
  CLUS_6                           5                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED       27     16     42     53     13
  DEL PEAK 14(8P23.2) WILD-TYPE     64     41    144     66     44
D24V9, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          27                            64
  CLUS_2                          16                            41
  CLUS_3                          42                           144
  CLUS_4                          53                            66
  CLUS_5                          13                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED       70     47     34
  DEL PEAK 14(8P23.2) WILD-TYPE    103    162     94
D24V10, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          70                           103
  CLUS_2                          47                           162
  CLUS_3                          34                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.2) MUTATED        8      4     11     16
  DEL PEAK 14(8P23.2) WILD-TYPE     31     17     33     22
D24V11, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           8                            31
  CLUS_2                           4                            17
  CLUS_3                          11                            33
  CLUS_4                          16                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.2) MUTATED        8     17      7      7
  DEL PEAK 14(8P23.2) WILD-TYPE     32     35     21     15
D24V12, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                           8                            32
  CLUS_2                          17                            35
  CLUS_3                           7                            21
  CLUS_4                           7                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK 15(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED        5     12      1
  DEL PEAK 15(9P23) WILD-TYPE     26     13     13
D25V1, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                         5                          26
  CLUS_2                        12                          13
  CLUS_3                         1                          13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 15(9P23) MUTATED        2      7      0      5      1      2      1
  DEL PEAK 15(9P23) WILD-TYPE      9      5      4      6     12      7      9
D25V2, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                         2                           9
  CLUS_2                         7                           5
  CLUS_3                         0                           4
  CLUS_4                         5                           6
  CLUS_5                         1                          12
  CLUS_6                         2                           7
  CLUS_7                         1                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P23) MUTATED        7     21     86     17     21      0
  DEL PEAK 15(9P23) WILD-TYPE     54     59     70     65     59     69
D25V3, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                         7                          54
  CLUS_2                        21                          59
  CLUS_3                        86                          70
  CLUS_4                        17                          65
  CLUS_5                        21                          59
  CLUS_6                         0                          69
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED        9     25     58      3
  DEL PEAK 15(9P23) WILD-TYPE     58     45     38     78
D25V4, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                         9                          58
  CLUS_2                        25                          45
  CLUS_3                        58                          38
  CLUS_4                         3                          78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P23) MUTATED       16     14     56     24     25      6
  DEL PEAK 15(9P23) WILD-TYPE     72     72     34     58     67     27
D25V5, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        16                          72
  CLUS_2                        14                          72
  CLUS_3                        56                          34
  CLUS_4                        24                          58
  CLUS_5                        25                          67
  CLUS_6                         6                          27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       25     55     37     24
  DEL PEAK 15(9P23) WILD-TYPE    110     57     48    115
D25V6, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        25                         110
  CLUS_2                        55                          57
  CLUS_3                        37                          48
  CLUS_4                        24                         115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P23) MUTATED       15     15     22     92      7
  DEL PEAK 15(9P23) WILD-TYPE     66    155     59     61     33
D25V7, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        15                          66
  CLUS_2                        15                         155
  CLUS_3                        22                          59
  CLUS_4                        92                          61
  CLUS_5                         7                          33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P23) MUTATED       32      3     15     84     13      4
  DEL PEAK 15(9P23) WILD-TYPE     85     30    168     48     22     21
D25V8, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        32                          85
  CLUS_2                         3                          30
  CLUS_3                        15                         168
  CLUS_4                        84                          48
  CLUS_5                        13                          22
  CLUS_6                         4                          21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P23) MUTATED       20     24     26     64     13
  DEL PEAK 15(9P23) WILD-TYPE     71     33    160     55     44
D25V9, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        20                          71
  CLUS_2                        24                          33
  CLUS_3                        26                         160
  CLUS_4                        64                          55
  CLUS_5                        13                          44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       71     24     52
  DEL PEAK 15(9P23) WILD-TYPE    102    185     76
D25V10, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        71                         102
  CLUS_2                        24                         185
  CLUS_3                        52                          76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED        8      4      4     17
  DEL PEAK 15(9P23) WILD-TYPE     31     17     40     21
D25V11, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                         8                          31
  CLUS_2                         4                          17
  CLUS_3                         4                          40
  CLUS_4                        17                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED        9     18      4      2
  DEL PEAK 15(9P23) WILD-TYPE     31     34     24     20
D25V12, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                         9                          31
  CLUS_2                        18                          34
  CLUS_3                         4                          24
  CLUS_4                         2                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 16(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED        5     13      1
  DEL PEAK 16(9P21.3) WILD-TYPE     26     12     13
D26V1, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                           5                            26
  CLUS_2                          13                            12
  CLUS_3                           1                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED        2      7      0      6      1      2
  DEL PEAK 16(9P21.3) WILD-TYPE      9      5      4      5     12      7
                               vv
clus                            CLUS_7
  DEL PEAK 16(9P21.3) MUTATED        1
  DEL PEAK 16(9P21.3) WILD-TYPE      9
D26V2, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           7                             5
  CLUS_3                           0                             4
  CLUS_4                           6                             5
  CLUS_5                           1                            12
  CLUS_6                           2                             7
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED        7     23     89     17     22      1
  DEL PEAK 16(9P21.3) WILD-TYPE     54     57     67     65     58     68
D26V3, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                           7                            54
  CLUS_2                          23                            57
  CLUS_3                          89                            67
  CLUS_4                          17                            65
  CLUS_5                          22                            58
  CLUS_6                           1                            68
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED        9     28     57      4
  DEL PEAK 16(9P21.3) WILD-TYPE     58     42     39     77
D26V4, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                          28                            42
  CLUS_3                          57                            39
  CLUS_4                           4                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED       17     15     59     23     27      6
  DEL PEAK 16(9P21.3) WILD-TYPE     71     71     31     59     65     27
D26V5, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          17                            71
  CLUS_2                          15                            71
  CLUS_3                          59                            31
  CLUS_4                          23                            59
  CLUS_5                          27                            65
  CLUS_6                           6                            27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       28     53     41     25
  DEL PEAK 16(9P21.3) WILD-TYPE    107     59     44    114
D26V6, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          28                           107
  CLUS_2                          53                            59
  CLUS_3                          41                            44
  CLUS_4                          25                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P21.3) MUTATED       16     17     24     94      7
  DEL PEAK 16(9P21.3) WILD-TYPE     65    153     57     59     33
D26V7, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          16                            65
  CLUS_2                          17                           153
  CLUS_3                          24                            57
  CLUS_4                          94                            59
  CLUS_5                           7                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED       32      2     16     90     14      4
  DEL PEAK 16(9P21.3) WILD-TYPE     85     31    167     42     21     21
D26V8, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          32                            85
  CLUS_2                           2                            31
  CLUS_3                          16                           167
  CLUS_4                          90                            42
  CLUS_5                          14                            21
  CLUS_6                           4                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P21.3) MUTATED       23     24     27     65     14
  DEL PEAK 16(9P21.3) WILD-TYPE     68     33    159     54     43
D26V9, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          23                            68
  CLUS_2                          24                            33
  CLUS_3                          27                           159
  CLUS_4                          65                            54
  CLUS_5                          14                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       77     25     51
  DEL PEAK 16(9P21.3) WILD-TYPE     96    184     77
D26V10, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          77                            96
  CLUS_2                          25                           184
  CLUS_3                          51                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED        8      5      4     18
  DEL PEAK 16(9P21.3) WILD-TYPE     31     16     40     20
D26V11, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                           8                            31
  CLUS_2                           5                            16
  CLUS_3                           4                            40
  CLUS_4                          18                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED        9     21      3      2
  DEL PEAK 16(9P21.3) WILD-TYPE     31     31     25     20
D26V12, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                           9                            31
  CLUS_2                          21                            31
  CLUS_3                           3                            25
  CLUS_4                           2                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 17(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q23.31) MUTATED        5      6      4
  DEL PEAK 17(10Q23.31) WILD-TYPE     26     19     10
D27V1, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                             5                              26
  CLUS_2                             6                              19
  CLUS_3                             4                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q23.31) MUTATED        1      4      0      2      3      1
  DEL PEAK 17(10Q23.31) WILD-TYPE     10      8      4      9     10      8
                                 vv
clus                              CLUS_7
  DEL PEAK 17(10Q23.31) MUTATED        4
  DEL PEAK 17(10Q23.31) WILD-TYPE      6
D27V2, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                             1                              10
  CLUS_2                             4                               8
  CLUS_3                             0                               4
  CLUS_4                             2                               9
  CLUS_5                             3                              10
  CLUS_6                             1                               8
  CLUS_7                             4                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q23.31) MUTATED        7     11     41      7     14     16
  DEL PEAK 17(10Q23.31) WILD-TYPE     54     69    115     75     66     53
D27V3, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                             7                              54
  CLUS_2                            11                              69
  CLUS_3                            41                             115
  CLUS_4                             7                              75
  CLUS_5                            14                              66
  CLUS_6                            16                              53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q23.31) MUTATED        8     12     27     12
  DEL PEAK 17(10Q23.31) WILD-TYPE     59     58     69     69
D27V4, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                             8                              59
  CLUS_2                            12                              58
  CLUS_3                            27                              69
  CLUS_4                            12                              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q23.31) MUTATED       16     14     21     14     13      7
  DEL PEAK 17(10Q23.31) WILD-TYPE     72     72     69     68     79     26
D27V5, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            16                              72
  CLUS_2                            14                              72
  CLUS_3                            21                              69
  CLUS_4                            14                              68
  CLUS_5                            13                              79
  CLUS_6                             7                              26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q23.31) MUTATED       15     26     22     22
  DEL PEAK 17(10Q23.31) WILD-TYPE    120     86     63    117
D27V6, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            15                             120
  CLUS_2                            26                              86
  CLUS_3                            22                              63
  CLUS_4                            22                             117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q23.31) MUTATED       18     22     14     33      8
  DEL PEAK 17(10Q23.31) WILD-TYPE     63    148     67    120     32
D27V7, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            18                              63
  CLUS_2                            22                             148
  CLUS_3                            14                              67
  CLUS_4                            33                             120
  CLUS_5                             8                              32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q23.31) MUTATED       22      3     21     37      3      9
  DEL PEAK 17(10Q23.31) WILD-TYPE     95     30    162     95     32     16
D27V8, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            22                              95
  CLUS_2                             3                              30
  CLUS_3                            21                             162
  CLUS_4                            37                              95
  CLUS_5                             3                              32
  CLUS_6                             9                              16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q23.31) MUTATED       15      4     25     36     14
  DEL PEAK 17(10Q23.31) WILD-TYPE     76     53    161     83     43
D27V9, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            15                              76
  CLUS_2                             4                              53
  CLUS_3                            25                             161
  CLUS_4                            36                              83
  CLUS_5                            14                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q23.31) MUTATED       36     24     34
  DEL PEAK 17(10Q23.31) WILD-TYPE    137    185     94
D27V10, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                            36                             137
  CLUS_2                            24                             185
  CLUS_3                            34                              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q23.31) MUTATED        5      3      6      7
  DEL PEAK 17(10Q23.31) WILD-TYPE     34     18     38     31
D27V11, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                             5                              34
  CLUS_2                             3                              18
  CLUS_3                             6                              38
  CLUS_4                             7                              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q23.31) MUTATED        5     11      3      2
  DEL PEAK 17(10Q23.31) WILD-TYPE     35     41     25     20
D27V12, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                             5                              35
  CLUS_2                            11                              41
  CLUS_3                             3                              25
  CLUS_4                             2                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 18(13Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q13.3) MUTATED        1      7      3
  DEL PEAK 18(13Q13.3) WILD-TYPE     30     18     11
D28V1, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) MUTATED DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                            7                             18
  CLUS_3                            3                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(13Q13.3) MUTATED        0      3      0      4      1      0
  DEL PEAK 18(13Q13.3) WILD-TYPE     11      9      4      7     12      9
                                vv
clus                             CLUS_7
  DEL PEAK 18(13Q13.3) MUTATED        3
  DEL PEAK 18(13Q13.3) WILD-TYPE      7
D28V2, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) MUTATED DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                            3                              9
  CLUS_3                            0                              4
  CLUS_4                            4                              7
  CLUS_5                            1                             12
  CLUS_6                            0                              9
  CLUS_7                            3                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(13Q13.3) MUTATED        6      9     33      8     17      8
  DEL PEAK 18(13Q13.3) WILD-TYPE     55     71    123     74     63     61
D28V3, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) MUTATED DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                            6                             55
  CLUS_2                            9                             71
  CLUS_3                           33                            123
  CLUS_4                            8                             74
  CLUS_5                           17                             63
  CLUS_6                            8                             61
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q13.3) MUTATED        8     17     20      4
  DEL PEAK 18(13Q13.3) WILD-TYPE     59     53     76     77
D28V4, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) MUTATED DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                           17                             53
  CLUS_3                           20                             76
  CLUS_4                            4                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(13Q13.3) MUTATED       11      3     33     10     12      3
  DEL PEAK 18(13Q13.3) WILD-TYPE     77     83     57     72     80     30
D28V5, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) MUTATED DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                           11                             77
  CLUS_2                            3                             83
  CLUS_3                           33                             57
  CLUS_4                           10                             72
  CLUS_5                           12                             80
  CLUS_6                            3                             30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q13.3) MUTATED       13     23     22     14
  DEL PEAK 18(13Q13.3) WILD-TYPE    122     89     63    125
D28V6, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) MUTATED DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                           13                            122
  CLUS_2                           23                             89
  CLUS_3                           22                             63
  CLUS_4                           14                            125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(13Q13.3) MUTATED       13     15      6     45      2
  DEL PEAK 18(13Q13.3) WILD-TYPE     68    155     75    108     38
D28V7, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) MUTATED DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                           13                             68
  CLUS_2                           15                            155
  CLUS_3                            6                             75
  CLUS_4                           45                            108
  CLUS_5                            2                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(13Q13.3) MUTATED        6      2     15     43      8      7
  DEL PEAK 18(13Q13.3) WILD-TYPE    111     31    168     89     27     18
D28V8, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) MUTATED DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                            6                            111
  CLUS_2                            2                             31
  CLUS_3                           15                            168
  CLUS_4                           43                             89
  CLUS_5                            8                             27
  CLUS_6                            7                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(13Q13.3) MUTATED       10     12     15     36      6
  DEL PEAK 18(13Q13.3) WILD-TYPE     81     45    171     83     51
D28V9, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) MUTATED DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                           10                             81
  CLUS_2                           12                             45
  CLUS_3                           15                            171
  CLUS_4                           36                             83
  CLUS_5                            6                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q13.3) MUTATED       35     15     29
  DEL PEAK 18(13Q13.3) WILD-TYPE    138    194     99
D28V10, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) MUTATED DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                           35                            138
  CLUS_2                           15                            194
  CLUS_3                           29                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q13.3) MUTATED        6      1      3      9
  DEL PEAK 18(13Q13.3) WILD-TYPE     33     20     41     29
D28V11, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) MUTATED DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                            6                             33
  CLUS_2                            1                             20
  CLUS_3                            3                             41
  CLUS_4                            9                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q13.3) MUTATED        7      9      2      1
  DEL PEAK 18(13Q13.3) WILD-TYPE     33     43     26     21
D28V12, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) MUTATED DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                            7                             33
  CLUS_2                            9                             43
  CLUS_3                            2                             26
  CLUS_4                            1                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 19(14Q31.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(14Q31.1) MUTATED        9     20      2
  DEL PEAK 19(14Q31.1) WILD-TYPE     22      5     12
D29V1, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) MUTATED DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                            9                             22
  CLUS_2                           20                              5
  CLUS_3                            2                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(14Q31.1) MUTATED        4      7      1     11      5      1
  DEL PEAK 19(14Q31.1) WILD-TYPE      7      5      3      0      8      8
                                vv
clus                             CLUS_7
  DEL PEAK 19(14Q31.1) MUTATED        2
  DEL PEAK 19(14Q31.1) WILD-TYPE      8
D29V2, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) MUTATED DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            7                              5
  CLUS_3                            1                              3
  CLUS_4                           11                              0
  CLUS_5                            5                              8
  CLUS_6                            1                              8
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(14Q31.1) MUTATED       24     32    103     27     36      6
  DEL PEAK 19(14Q31.1) WILD-TYPE     37     48     53     55     44     63
D29V3, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) MUTATED DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                           24                             37
  CLUS_2                           32                             48
  CLUS_3                          103                             53
  CLUS_4                           27                             55
  CLUS_5                           36                             44
  CLUS_6                            6                             63
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(14Q31.1) MUTATED       19     36     60     18
  DEL PEAK 19(14Q31.1) WILD-TYPE     48     34     36     63
D29V4, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) MUTATED DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                           19                             48
  CLUS_2                           36                             34
  CLUS_3                           60                             36
  CLUS_4                           18                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(14Q31.1) MUTATED       30     23     58     57     33      7
  DEL PEAK 19(14Q31.1) WILD-TYPE     58     63     32     25     59     26
D29V5, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) MUTATED DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                           30                             58
  CLUS_2                           23                             63
  CLUS_3                           58                             32
  CLUS_4                           57                             25
  CLUS_5                           33                             59
  CLUS_6                            7                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(14Q31.1) MUTATED       49     56     46     57
  DEL PEAK 19(14Q31.1) WILD-TYPE     86     56     39     82
D29V6, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) MUTATED DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                           49                             86
  CLUS_2                           56                             56
  CLUS_3                           46                             39
  CLUS_4                           57                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(14Q31.1) MUTATED       20     57     26    112     10
  DEL PEAK 19(14Q31.1) WILD-TYPE     61    113     55     41     30
D29V7, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) MUTATED DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                           20                             61
  CLUS_2                           57                            113
  CLUS_3                           26                             55
  CLUS_4                          112                             41
  CLUS_5                           10                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(14Q31.1) MUTATED       45      7     57     81     33      2
  DEL PEAK 19(14Q31.1) WILD-TYPE     72     26    126     51      2     23
D29V8, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) MUTATED DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                           45                             72
  CLUS_2                            7                             26
  CLUS_3                           57                            126
  CLUS_4                           81                             51
  CLUS_5                           33                              2
  CLUS_6                            2                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(14Q31.1) MUTATED       30     35     64     79     14
  DEL PEAK 19(14Q31.1) WILD-TYPE     61     22    122     40     43
D29V9, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) MUTATED DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                           30                             61
  CLUS_2                           35                             22
  CLUS_3                           64                            122
  CLUS_4                           79                             40
  CLUS_5                           14                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(14Q31.1) MUTATED       75     69     78
  DEL PEAK 19(14Q31.1) WILD-TYPE     98    140     50
D29V10, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) MUTATED DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                           75                             98
  CLUS_2                           69                            140
  CLUS_3                           78                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(14Q31.1) MUTATED       14      5     15     19
  DEL PEAK 19(14Q31.1) WILD-TYPE     25     16     29     19
D29V11, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) MUTATED DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                           14                             25
  CLUS_2                            5                             16
  CLUS_3                           15                             29
  CLUS_4                           19                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(14Q31.1) MUTATED       15     20     14      4
  DEL PEAK 19(14Q31.1) WILD-TYPE     25     32     14     18
D29V12, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) MUTATED DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                           15                             25
  CLUS_2                           20                             32
  CLUS_3                           14                             14
  CLUS_4                            4                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
