[1] "ofn"        "-oTKIRP-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRP-TP/22542911/KIRP-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRP-TP/22533930/transformed.cor.cli.txt"

nPatients in clinical file=291, in cluster file=288, common to both=288
[1]  28 288
[1] "AMP PEAK 1(2P23.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE 
                          45                          243 
  AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE 
                          45                          243 
[1] "AMP PEAK 2(2Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                          53                          235 
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                          53                          235 
[1] "AMP PEAK 3(3Q26.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE 
                          101                           187 
  AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE 
                          101                           187 
[1] "AMP PEAK 4(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 4(5Q35.3) MUTATED AMP PEAK 4(5Q35.3) WILD-TYPE 
                          37                          251 
  AMP PEAK 4(5Q35.3) MUTATED AMP PEAK 4(5Q35.3) WILD-TYPE 
                          37                          251 
[1] "AMP PEAK 5(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 5(7P11.2) MUTATED AMP PEAK 5(7P11.2) WILD-TYPE 
                         175                          113 
  AMP PEAK 5(7P11.2) MUTATED AMP PEAK 5(7P11.2) WILD-TYPE 
                         175                          113 
[1] "AMP PEAK 6(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 6(7Q31.2) MUTATED AMP PEAK 6(7Q31.2) WILD-TYPE 
                         177                          111 
  AMP PEAK 6(7Q31.2) MUTATED AMP PEAK 6(7Q31.2) WILD-TYPE 
                         177                          111 
[1] "AMP PEAK 7(17Q23.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 7(17Q23.2) MUTATED AMP PEAK 7(17Q23.2) WILD-TYPE 
                          199                            89 
  AMP PEAK 7(17Q23.2) MUTATED AMP PEAK 7(17Q23.2) WILD-TYPE 
                          199                            89 
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            54                            234 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            54                            234 
[1] "DEL PEAK  2(2P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE 
                          8                         280 
  DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE 
                          8                         280 
[1] "DEL PEAK  3(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           10                           278 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           10                           278 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           12                           276 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           12                           276 
[1] "DEL PEAK  5(3P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE 
                           25                           263 
  DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE 
                           25                           263 
[1] "DEL PEAK  6(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           32                           256 
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           32                           256 
[1] "DEL PEAK  7(5P15.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE 
                            13                            275 
  DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE 
                            13                            275 
[1] "DEL PEAK  8(5Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                           11                           277 
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                           11                           277 
[1] "DEL PEAK  9(6P12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                           26                           262 
  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                           26                           262 
[1] "DEL PEAK 10(6Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q25.3) MUTATED DEL PEAK 10(6Q25.3) WILD-TYPE 
                           32                           256 
  DEL PEAK 10(6Q25.3) MUTATED DEL PEAK 10(6Q25.3) WILD-TYPE 
                           32                           256 
[1] "DEL PEAK 11(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           40                           248 
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           40                           248 
[1] "DEL PEAK 12(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(10Q21.1) MUTATED DEL PEAK 12(10Q21.1) WILD-TYPE 
                            19                            269 
  DEL PEAK 12(10Q21.1) MUTATED DEL PEAK 12(10Q21.1) WILD-TYPE 
                            19                            269 
[1] "DEL PEAK 13(11Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(11Q22.3) MUTATED DEL PEAK 13(11Q22.3) WILD-TYPE 
                            31                            257 
  DEL PEAK 13(11Q22.3) MUTATED DEL PEAK 13(11Q22.3) WILD-TYPE 
                            31                            257 
[1] "DEL PEAK 14(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE 
                            29                            259 
  DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE 
                            29                            259 
[1] "DEL PEAK 15(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(14Q11.2) MUTATED DEL PEAK 15(14Q11.2) WILD-TYPE 
                            51                            237 
  DEL PEAK 15(14Q11.2) MUTATED DEL PEAK 15(14Q11.2) WILD-TYPE 
                            51                            237 
[1] "DEL PEAK 16(14Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(14Q24.2) MUTATED DEL PEAK 16(14Q24.2) WILD-TYPE 
                            50                            238 
  DEL PEAK 16(14Q24.2) MUTATED DEL PEAK 16(14Q24.2) WILD-TYPE 
                            50                            238 
[1] "DEL PEAK 17(15Q13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE 
                            35                            253 
  DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE 
                            35                            253 
[1] "DEL PEAK 18(16Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(16Q24.2) MUTATED DEL PEAK 18(16Q24.2) WILD-TYPE 
                            12                            276 
  DEL PEAK 18(16Q24.2) MUTATED DEL PEAK 18(16Q24.2) WILD-TYPE 
                            12                            276 
[1] "DEL PEAK 19(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(19P13.3) MUTATED DEL PEAK 19(19P13.3) WILD-TYPE 
                            23                            265 
  DEL PEAK 19(19P13.3) MUTATED DEL PEAK 19(19P13.3) WILD-TYPE 
                            23                            265 
[1] "DEL PEAK 20(19Q13.42) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(19Q13.42) MUTATED DEL PEAK 20(19Q13.42) WILD-TYPE 
                             19                             269 
  DEL PEAK 20(19Q13.42) MUTATED DEL PEAK 20(19Q13.42) WILD-TYPE 
                             19                             269 
[1] "DEL PEAK 21(22Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE 
                            63                            225 
  DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE 
                            63                            225 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 288 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 288 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(2P23.2) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(2P23.2) MUTATED        5      3     28      9
  AMP PEAK 1(2P23.2) WILD-TYPE    101     70     21     51
D1V1, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          5                          101
  CLUS_2                          3                           70
  CLUS_3                         28                           21
  CLUS_4                          9                           51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 1(2P23.2) MUTATED        5      2      2     19      5      9
  AMP PEAK 1(2P23.2) WILD-TYPE     51     40     57     38     24     20
D1V2, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          5                           51
  CLUS_2                          2                           40
  CLUS_3                          2                           57
  CLUS_4                         19                           38
  CLUS_5                          5                           24
  CLUS_6                          9                           20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED       10     12     10
  AMP PEAK 1(2P23.2) WILD-TYPE     65     70     46
D1V3, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         10                           65
  CLUS_2                         12                           70
  CLUS_3                         10                           46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(2P23.2) MUTATED        7      8     15      2
  AMP PEAK 1(2P23.2) WILD-TYPE     32     58     50     41
D1V4, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          7                           32
  CLUS_2                          8                           58
  CLUS_3                         15                           50
  CLUS_4                          2                           41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 1(2P23.2) MUTATED        6     13     11      2     13
  AMP PEAK 1(2P23.2) WILD-TYPE     26     77     59     30     51
D1V5, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          6                           26
  CLUS_2                         13                           77
  CLUS_3                         11                           59
  CLUS_4                          2                           30
  CLUS_5                         13                           51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED       18     19      8
  AMP PEAK 1(2P23.2) WILD-TYPE    100    104     39
D1V6, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         18                          100
  CLUS_2                         19                          104
  CLUS_3                          8                           39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 1(2P23.2) MUTATED        3      1     17      9     11      4
  AMP PEAK 1(2P23.2) WILD-TYPE     26     36     49     34     69     29
D1V7, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          3                           26
  CLUS_2                          1                           36
  CLUS_3                         17                           49
  CLUS_4                          9                           34
  CLUS_5                         11                           69
  CLUS_6                          4                           29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED       14     17     14
  AMP PEAK 1(2P23.2) WILD-TYPE    106     63     74
D1V8, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         14                          106
  CLUS_2                         17                           63
  CLUS_3                         14                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED        9     11     14
  AMP PEAK 1(2P23.2) WILD-TYPE     62     64     62
D1V9, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          9                           62
  CLUS_2                         11                           64
  CLUS_3                         14                           62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED       13     18      3
  AMP PEAK 1(2P23.2) WILD-TYPE     79     81     28
D1V10, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         13                           79
  CLUS_2                         18                           81
  CLUS_3                          3                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK 2(2Q32.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(2Q32.1) MUTATED        9      4     30     10
  AMP PEAK 2(2Q32.1) WILD-TYPE     97     69     19     50
D2V1, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          9                           97
  CLUS_2                          4                           69
  CLUS_3                         30                           19
  CLUS_4                         10                           50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 2(2Q32.1) MUTATED        6      5      2     22      7      8
  AMP PEAK 2(2Q32.1) WILD-TYPE     50     37     57     35     22     21
D2V2, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          6                           50
  CLUS_2                          5                           37
  CLUS_3                          2                           57
  CLUS_4                         22                           35
  CLUS_5                          7                           22
  CLUS_6                          8                           21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       13     15     12
  AMP PEAK 2(2Q32.1) WILD-TYPE     62     67     44
D2V3, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         13                           62
  CLUS_2                         15                           67
  CLUS_3                         12                           44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(2Q32.1) MUTATED        9     10     17      4
  AMP PEAK 2(2Q32.1) WILD-TYPE     30     56     48     39
D2V4, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          9                           30
  CLUS_2                         10                           56
  CLUS_3                         17                           48
  CLUS_4                          4                           39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 2(2Q32.1) MUTATED        7     14     13      2     17
  AMP PEAK 2(2Q32.1) WILD-TYPE     25     76     57     30     47
D2V5, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          7                           25
  CLUS_2                         14                           76
  CLUS_3                         13                           57
  CLUS_4                          2                           30
  CLUS_5                         17                           47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       23     22      8
  AMP PEAK 2(2Q32.1) WILD-TYPE     95    101     39
D2V6, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         23                           95
  CLUS_2                         22                          101
  CLUS_3                          8                           39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 2(2Q32.1) MUTATED        4      2     17     13     13      4
  AMP PEAK 2(2Q32.1) WILD-TYPE     25     35     49     30     67     29
D2V7, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          4                           25
  CLUS_2                          2                           35
  CLUS_3                         17                           49
  CLUS_4                         13                           30
  CLUS_5                         13                           67
  CLUS_6                          4                           29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       19     19     15
  AMP PEAK 2(2Q32.1) WILD-TYPE    101     61     73
D2V8, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         19                          101
  CLUS_2                         19                           61
  CLUS_3                         15                           73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       13     14     14
  AMP PEAK 2(2Q32.1) WILD-TYPE     58     61     62
D2V9, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         13                           58
  CLUS_2                         14                           61
  CLUS_3                         14                           62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       16     22      3
  AMP PEAK 2(2Q32.1) WILD-TYPE     76     77     28
D2V10, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         16                           76
  CLUS_2                         22                           77
  CLUS_3                          3                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK 3(3Q26.31) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(3Q26.31) MUTATED       25     27     37     12
  AMP PEAK 3(3Q26.31) WILD-TYPE     81     46     12     48
D3V1, multiclass
        clus
vv       AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE
  CLUS_1                          25                            81
  CLUS_2                          27                            46
  CLUS_3                          37                            12
  CLUS_4                          12                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(3Q26.31) MUTATED       20      9     15     38      7      6
  AMP PEAK 3(3Q26.31) WILD-TYPE     36     33     44     19     22     23
D3V2, multiclass
        clus
vv       AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE
  CLUS_1                          20                            36
  CLUS_2                           9                            33
  CLUS_3                          15                            44
  CLUS_4                          38                            19
  CLUS_5                           7                            22
  CLUS_6                           6                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q26.31) MUTATED       29     30     14
  AMP PEAK 3(3Q26.31) WILD-TYPE     46     52     42
D3V3, multiclass
        clus
vv       AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE
  CLUS_1                          29                            46
  CLUS_2                          30                            52
  CLUS_3                          14                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(3Q26.31) MUTATED       23     24     16     10
  AMP PEAK 3(3Q26.31) WILD-TYPE     16     42     49     33
D3V4, multiclass
        clus
vv       AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE
  CLUS_1                          23                            16
  CLUS_2                          24                            42
  CLUS_3                          16                            49
  CLUS_4                          10                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 3(3Q26.31) MUTATED       22     36     28      7      8
  AMP PEAK 3(3Q26.31) WILD-TYPE     10     54     42     25     56
D3V5, multiclass
        clus
vv       AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE
  CLUS_1                          22                            10
  CLUS_2                          36                            54
  CLUS_3                          28                            42
  CLUS_4                           7                            25
  CLUS_5                           8                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q26.31) MUTATED       37     54     10
  AMP PEAK 3(3Q26.31) WILD-TYPE     81     69     37
D3V6, multiclass
        clus
vv       AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE
  CLUS_1                          37                            81
  CLUS_2                          54                            69
  CLUS_3                          10                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(3Q26.31) MUTATED       11     12     33      7     22     16
  AMP PEAK 3(3Q26.31) WILD-TYPE     18     25     33     36     58     17
D3V7, multiclass
        clus
vv       AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE
  CLUS_1                          11                            18
  CLUS_2                          12                            25
  CLUS_3                          33                            33
  CLUS_4                           7                            36
  CLUS_5                          22                            58
  CLUS_6                          16                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q26.31) MUTATED       41     39     21
  AMP PEAK 3(3Q26.31) WILD-TYPE     79     41     67
D3V8, multiclass
        clus
vv       AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE
  CLUS_1                          41                            79
  CLUS_2                          39                            41
  CLUS_3                          21                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q26.31) MUTATED       25     26     21
  AMP PEAK 3(3Q26.31) WILD-TYPE     46     49     55
D3V9, multiclass
        clus
vv       AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE
  CLUS_1                          25                            46
  CLUS_2                          26                            49
  CLUS_3                          21                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q26.31) MUTATED       41     25      6
  AMP PEAK 3(3Q26.31) WILD-TYPE     51     74     25
D3V10, multiclass
        clus
vv       AMP PEAK 3(3Q26.31) MUTATED AMP PEAK 3(3Q26.31) WILD-TYPE
  CLUS_1                          41                            51
  CLUS_2                          25                            74
  CLUS_3                           6                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK 4(5Q35.3) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q35.3) MUTATED       16      1      4     16
  AMP PEAK 4(5Q35.3) WILD-TYPE     90     72     45     44
D4V1, multiclass
        clus
vv       AMP PEAK 4(5Q35.3) MUTATED AMP PEAK 4(5Q35.3) WILD-TYPE
  CLUS_1                         16                           90
  CLUS_2                          1                           72
  CLUS_3                          4                           45
  CLUS_4                         16                           44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 4(5Q35.3) MUTATED       10      5      2      2     10      5
  AMP PEAK 4(5Q35.3) WILD-TYPE     46     37     57     55     19     24
D4V2, multiclass
        clus
vv       AMP PEAK 4(5Q35.3) MUTATED AMP PEAK 4(5Q35.3) WILD-TYPE
  CLUS_1                         10                           46
  CLUS_2                          5                           37
  CLUS_3                          2                           57
  CLUS_4                          2                           55
  CLUS_5                         10                           19
  CLUS_6                          5                           24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.3) MUTATED       10      9     10
  AMP PEAK 4(5Q35.3) WILD-TYPE     65     73     46
D4V3, multiclass
        clus
vv       AMP PEAK 4(5Q35.3) MUTATED AMP PEAK 4(5Q35.3) WILD-TYPE
  CLUS_1                         10                           65
  CLUS_2                          9                           73
  CLUS_3                         10                           46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q35.3) MUTATED        5      7     12      5
  AMP PEAK 4(5Q35.3) WILD-TYPE     34     59     53     38
D4V4, multiclass
        clus
vv       AMP PEAK 4(5Q35.3) MUTATED AMP PEAK 4(5Q35.3) WILD-TYPE
  CLUS_1                          5                           34
  CLUS_2                          7                           59
  CLUS_3                         12                           53
  CLUS_4                          5                           38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 4(5Q35.3) MUTATED        5      4     12      1     15
  AMP PEAK 4(5Q35.3) WILD-TYPE     27     86     58     31     49
D4V5, multiclass
        clus
vv       AMP PEAK 4(5Q35.3) MUTATED AMP PEAK 4(5Q35.3) WILD-TYPE
  CLUS_1                          5                           27
  CLUS_2                          4                           86
  CLUS_3                         12                           58
  CLUS_4                          1                           31
  CLUS_5                         15                           49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.3) MUTATED       29      4      4
  AMP PEAK 4(5Q35.3) WILD-TYPE     89    119     43
D4V6, multiclass
        clus
vv       AMP PEAK 4(5Q35.3) MUTATED AMP PEAK 4(5Q35.3) WILD-TYPE
  CLUS_1                         29                           89
  CLUS_2                          4                          119
  CLUS_3                          4                           43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 4(5Q35.3) MUTATED        5      4      5      9     10      4
  AMP PEAK 4(5Q35.3) WILD-TYPE     24     33     61     34     70     29
D4V7, multiclass
        clus
vv       AMP PEAK 4(5Q35.3) MUTATED AMP PEAK 4(5Q35.3) WILD-TYPE
  CLUS_1                          5                           24
  CLUS_2                          4                           33
  CLUS_3                          5                           61
  CLUS_4                          9                           34
  CLUS_5                         10                           70
  CLUS_6                          4                           29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.3) MUTATED       22      5     10
  AMP PEAK 4(5Q35.3) WILD-TYPE     98     75     78
D4V8, multiclass
        clus
vv       AMP PEAK 4(5Q35.3) MUTATED AMP PEAK 4(5Q35.3) WILD-TYPE
  CLUS_1                         22                           98
  CLUS_2                          5                           75
  CLUS_3                         10                           78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.3) MUTATED       13      8     11
  AMP PEAK 4(5Q35.3) WILD-TYPE     58     67     65
D4V9, multiclass
        clus
vv       AMP PEAK 4(5Q35.3) MUTATED AMP PEAK 4(5Q35.3) WILD-TYPE
  CLUS_1                         13                           58
  CLUS_2                          8                           67
  CLUS_3                         11                           65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.3) MUTATED       16     15      1
  AMP PEAK 4(5Q35.3) WILD-TYPE     76     84     30
D4V10, multiclass
        clus
vv       AMP PEAK 4(5Q35.3) MUTATED AMP PEAK 4(5Q35.3) WILD-TYPE
  CLUS_1                         16                           76
  CLUS_2                         15                           84
  CLUS_3                          1                           30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK 5(7P11.2) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(7P11.2) MUTATED       30     71     38     36
  AMP PEAK 5(7P11.2) WILD-TYPE     76      2     11     24
D5V1, multiclass
        clus
vv       AMP PEAK 5(7P11.2) MUTATED AMP PEAK 5(7P11.2) WILD-TYPE
  CLUS_1                         30                           76
  CLUS_2                         71                            2
  CLUS_3                         38                           11
  CLUS_4                         36                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 5(7P11.2) MUTATED       28     21     47     50      7     11
  AMP PEAK 5(7P11.2) WILD-TYPE     28     21     12      7     22     18
D5V2, multiclass
        clus
vv       AMP PEAK 5(7P11.2) MUTATED AMP PEAK 5(7P11.2) WILD-TYPE
  CLUS_1                         28                           28
  CLUS_2                         21                           21
  CLUS_3                         47                           12
  CLUS_4                         50                            7
  CLUS_5                          7                           22
  CLUS_6                         11                           18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7P11.2) MUTATED       46     60     27
  AMP PEAK 5(7P11.2) WILD-TYPE     29     22     29
D5V3, multiclass
        clus
vv       AMP PEAK 5(7P11.2) MUTATED AMP PEAK 5(7P11.2) WILD-TYPE
  CLUS_1                         46                           29
  CLUS_2                         60                           22
  CLUS_3                         27                           29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(7P11.2) MUTATED       31     53     29     20
  AMP PEAK 5(7P11.2) WILD-TYPE      8     13     36     23
D5V4, multiclass
        clus
vv       AMP PEAK 5(7P11.2) MUTATED AMP PEAK 5(7P11.2) WILD-TYPE
  CLUS_1                         31                            8
  CLUS_2                         53                           13
  CLUS_3                         29                           36
  CLUS_4                         20                           23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 5(7P11.2) MUTATED       28     79     39     13     16
  AMP PEAK 5(7P11.2) WILD-TYPE      4     11     31     19     48
D5V5, multiclass
        clus
vv       AMP PEAK 5(7P11.2) MUTATED AMP PEAK 5(7P11.2) WILD-TYPE
  CLUS_1                         28                            4
  CLUS_2                         79                           11
  CLUS_3                         39                           31
  CLUS_4                         13                           19
  CLUS_5                         16                           48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7P11.2) MUTATED       55    104     16
  AMP PEAK 5(7P11.2) WILD-TYPE     63     19     31
D5V6, multiclass
        clus
vv       AMP PEAK 5(7P11.2) MUTATED AMP PEAK 5(7P11.2) WILD-TYPE
  CLUS_1                         55                           63
  CLUS_2                        104                           19
  CLUS_3                         16                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 5(7P11.2) MUTATED       18     20     52     14     47     24
  AMP PEAK 5(7P11.2) WILD-TYPE     11     17     14     29     33      9
D5V7, multiclass
        clus
vv       AMP PEAK 5(7P11.2) MUTATED AMP PEAK 5(7P11.2) WILD-TYPE
  CLUS_1                         18                           11
  CLUS_2                         20                           17
  CLUS_3                         52                           14
  CLUS_4                         14                           29
  CLUS_5                         47                           33
  CLUS_6                         24                            9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7P11.2) MUTATED       66     63     46
  AMP PEAK 5(7P11.2) WILD-TYPE     54     17     42
D5V8, multiclass
        clus
vv       AMP PEAK 5(7P11.2) MUTATED AMP PEAK 5(7P11.2) WILD-TYPE
  CLUS_1                         66                           54
  CLUS_2                         63                           17
  CLUS_3                         46                           42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7P11.2) MUTATED       33     61     38
  AMP PEAK 5(7P11.2) WILD-TYPE     38     14     38
D5V9, multiclass
        clus
vv       AMP PEAK 5(7P11.2) MUTATED AMP PEAK 5(7P11.2) WILD-TYPE
  CLUS_1                         33                           38
  CLUS_2                         61                           14
  CLUS_3                         38                           38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7P11.2) MUTATED       61     44     27
  AMP PEAK 5(7P11.2) WILD-TYPE     31     55      4
D5V10, multiclass
        clus
vv       AMP PEAK 5(7P11.2) MUTATED AMP PEAK 5(7P11.2) WILD-TYPE
  CLUS_1                         61                           31
  CLUS_2                         44                           55
  CLUS_3                         27                            4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK 6(7Q31.2) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(7Q31.2) MUTATED       31     73     38     35
  AMP PEAK 6(7Q31.2) WILD-TYPE     75      0     11     25
D6V1, multiclass
        clus
vv       AMP PEAK 6(7Q31.2) MUTATED AMP PEAK 6(7Q31.2) WILD-TYPE
  CLUS_1                         31                           75
  CLUS_2                         73                            0
  CLUS_3                         38                           11
  CLUS_4                         35                           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 6(7Q31.2) MUTATED       28     21     48     50      7     12
  AMP PEAK 6(7Q31.2) WILD-TYPE     28     21     11      7     22     17
D6V2, multiclass
        clus
vv       AMP PEAK 6(7Q31.2) MUTATED AMP PEAK 6(7Q31.2) WILD-TYPE
  CLUS_1                         28                           28
  CLUS_2                         21                           21
  CLUS_3                         48                           11
  CLUS_4                         50                            7
  CLUS_5                          7                           22
  CLUS_6                         12                           17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(7Q31.2) MUTATED       46     60     28
  AMP PEAK 6(7Q31.2) WILD-TYPE     29     22     28
D6V3, multiclass
        clus
vv       AMP PEAK 6(7Q31.2) MUTATED AMP PEAK 6(7Q31.2) WILD-TYPE
  CLUS_1                         46                           29
  CLUS_2                         60                           22
  CLUS_3                         28                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(7Q31.2) MUTATED       31     53     30     20
  AMP PEAK 6(7Q31.2) WILD-TYPE      8     13     35     23
D6V4, multiclass
        clus
vv       AMP PEAK 6(7Q31.2) MUTATED AMP PEAK 6(7Q31.2) WILD-TYPE
  CLUS_1                         31                            8
  CLUS_2                         53                           13
  CLUS_3                         30                           35
  CLUS_4                         20                           23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 6(7Q31.2) MUTATED       28     80     39     13     17
  AMP PEAK 6(7Q31.2) WILD-TYPE      4     10     31     19     47
D6V5, multiclass
        clus
vv       AMP PEAK 6(7Q31.2) MUTATED AMP PEAK 6(7Q31.2) WILD-TYPE
  CLUS_1                         28                            4
  CLUS_2                         80                           10
  CLUS_3                         39                           31
  CLUS_4                         13                           19
  CLUS_5                         17                           47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(7Q31.2) MUTATED       54    105     18
  AMP PEAK 6(7Q31.2) WILD-TYPE     64     18     29
D6V6, multiclass
        clus
vv       AMP PEAK 6(7Q31.2) MUTATED AMP PEAK 6(7Q31.2) WILD-TYPE
  CLUS_1                         54                           64
  CLUS_2                        105                           18
  CLUS_3                         18                           29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 6(7Q31.2) MUTATED       18     20     52     16     48     23
  AMP PEAK 6(7Q31.2) WILD-TYPE     11     17     14     27     32     10
D6V7, multiclass
        clus
vv       AMP PEAK 6(7Q31.2) MUTATED AMP PEAK 6(7Q31.2) WILD-TYPE
  CLUS_1                         18                           11
  CLUS_2                         20                           17
  CLUS_3                         52                           14
  CLUS_4                         16                           27
  CLUS_5                         48                           32
  CLUS_6                         23                           10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(7Q31.2) MUTATED       67     63     47
  AMP PEAK 6(7Q31.2) WILD-TYPE     53     17     41
D6V8, multiclass
        clus
vv       AMP PEAK 6(7Q31.2) MUTATED AMP PEAK 6(7Q31.2) WILD-TYPE
  CLUS_1                         67                           53
  CLUS_2                         63                           17
  CLUS_3                         47                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(7Q31.2) MUTATED       33     62     38
  AMP PEAK 6(7Q31.2) WILD-TYPE     38     13     38
D6V9, multiclass
        clus
vv       AMP PEAK 6(7Q31.2) MUTATED AMP PEAK 6(7Q31.2) WILD-TYPE
  CLUS_1                         33                           38
  CLUS_2                         62                           13
  CLUS_3                         38                           38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(7Q31.2) MUTATED       62     44     27
  AMP PEAK 6(7Q31.2) WILD-TYPE     30     55      4
D6V10, multiclass
        clus
vv       AMP PEAK 6(7Q31.2) MUTATED AMP PEAK 6(7Q31.2) WILD-TYPE
  CLUS_1                         62                           30
  CLUS_2                         44                           55
  CLUS_3                         27                            4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK 7(17Q23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(17Q23.2) MUTATED       31     71     44     53
  AMP PEAK 7(17Q23.2) WILD-TYPE     75      2      5      7
D7V1, multiclass
        clus
vv       AMP PEAK 7(17Q23.2) MUTATED AMP PEAK 7(17Q23.2) WILD-TYPE
  CLUS_1                          31                            75
  CLUS_2                          71                             2
  CLUS_3                          44                             5
  CLUS_4                          53                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 7(17Q23.2) MUTATED       32     24     49     54     14     14
  AMP PEAK 7(17Q23.2) WILD-TYPE     24     18     10      3     15     15
D7V2, multiclass
        clus
vv       AMP PEAK 7(17Q23.2) MUTATED AMP PEAK 7(17Q23.2) WILD-TYPE
  CLUS_1                          32                            24
  CLUS_2                          24                            18
  CLUS_3                          49                            10
  CLUS_4                          54                             3
  CLUS_5                          14                            15
  CLUS_6                          14                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(17Q23.2) MUTATED       55     64     29
  AMP PEAK 7(17Q23.2) WILD-TYPE     20     18     27
D7V3, multiclass
        clus
vv       AMP PEAK 7(17Q23.2) MUTATED AMP PEAK 7(17Q23.2) WILD-TYPE
  CLUS_1                          55                            20
  CLUS_2                          64                            18
  CLUS_3                          29                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(17Q23.2) MUTATED       35     53     36     24
  AMP PEAK 7(17Q23.2) WILD-TYPE      4     13     29     19
D7V4, multiclass
        clus
vv       AMP PEAK 7(17Q23.2) MUTATED AMP PEAK 7(17Q23.2) WILD-TYPE
  CLUS_1                          35                             4
  CLUS_2                          53                            13
  CLUS_3                          36                            29
  CLUS_4                          24                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 7(17Q23.2) MUTATED       28     82     43     14     32
  AMP PEAK 7(17Q23.2) WILD-TYPE      4      8     27     18     32
D7V5, multiclass
        clus
vv       AMP PEAK 7(17Q23.2) MUTATED AMP PEAK 7(17Q23.2) WILD-TYPE
  CLUS_1                          28                             4
  CLUS_2                          82                             8
  CLUS_3                          43                            27
  CLUS_4                          14                            18
  CLUS_5                          32                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(17Q23.2) MUTATED       72    109     18
  AMP PEAK 7(17Q23.2) WILD-TYPE     46     14     29
D7V6, multiclass
        clus
vv       AMP PEAK 7(17Q23.2) MUTATED AMP PEAK 7(17Q23.2) WILD-TYPE
  CLUS_1                          72                            46
  CLUS_2                         109                            14
  CLUS_3                          18                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 7(17Q23.2) MUTATED       21     23     56     23     56     20
  AMP PEAK 7(17Q23.2) WILD-TYPE      8     14     10     20     24     13
D7V7, multiclass
        clus
vv       AMP PEAK 7(17Q23.2) MUTATED AMP PEAK 7(17Q23.2) WILD-TYPE
  CLUS_1                          21                             8
  CLUS_2                          23                            14
  CLUS_3                          56                            10
  CLUS_4                          23                            20
  CLUS_5                          56                            24
  CLUS_6                          20                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(17Q23.2) MUTATED       76     66     57
  AMP PEAK 7(17Q23.2) WILD-TYPE     44     14     31
D7V8, multiclass
        clus
vv       AMP PEAK 7(17Q23.2) MUTATED AMP PEAK 7(17Q23.2) WILD-TYPE
  CLUS_1                          76                            44
  CLUS_2                          66                            14
  CLUS_3                          57                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(17Q23.2) MUTATED       44     64     43
  AMP PEAK 7(17Q23.2) WILD-TYPE     27     11     33
D7V9, multiclass
        clus
vv       AMP PEAK 7(17Q23.2) MUTATED AMP PEAK 7(17Q23.2) WILD-TYPE
  CLUS_1                          44                            27
  CLUS_2                          64                            11
  CLUS_3                          43                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(17Q23.2) MUTATED       68     55     28
  AMP PEAK 7(17Q23.2) WILD-TYPE     24     44      3
D7V10, multiclass
        clus
vv       AMP PEAK 7(17Q23.2) MUTATED AMP PEAK 7(17Q23.2) WILD-TYPE
  CLUS_1                          68                            24
  CLUS_2                          55                            44
  CLUS_3                          28                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       24      1     10     19
  DEL PEAK  1(1P36.31) WILD-TYPE     82     72     39     41
D8V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           24                             82
  CLUS_2                            1                             72
  CLUS_3                           10                             39
  CLUS_4                           19                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED       12      2      1      5     19     12
  DEL PEAK  1(1P36.31) WILD-TYPE     44     40     58     52     10     17
D8V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           12                             44
  CLUS_2                            2                             40
  CLUS_3                            1                             58
  CLUS_4                            5                             52
  CLUS_5                           19                             10
  CLUS_6                           12                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       18     13     12
  DEL PEAK  1(1P36.31) WILD-TYPE     57     69     44
D8V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           18                             57
  CLUS_2                           13                             69
  CLUS_3                           12                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        6      9     20      8
  DEL PEAK  1(1P36.31) WILD-TYPE     33     57     45     35
D8V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            6                             33
  CLUS_2                            9                             57
  CLUS_3                           20                             45
  CLUS_4                            8                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED        1      4      9      5     35
  DEL PEAK  1(1P36.31) WILD-TYPE     31     86     61     27     29
D8V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            1                             31
  CLUS_2                            4                             86
  CLUS_3                            9                             61
  CLUS_4                            5                             27
  CLUS_5                           35                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       28      7     19
  DEL PEAK  1(1P36.31) WILD-TYPE     90    116     28
D8V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           28                             90
  CLUS_2                            7                            116
  CLUS_3                           19                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED        5     10      6     16     14      3
  DEL PEAK  1(1P36.31) WILD-TYPE     24     27     60     27     66     30
D8V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            5                             24
  CLUS_2                           10                             27
  CLUS_3                            6                             60
  CLUS_4                           16                             27
  CLUS_5                           14                             66
  CLUS_6                            3                             30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       23     16     15
  DEL PEAK  1(1P36.31) WILD-TYPE     97     64     73
D8V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           23                             97
  CLUS_2                           16                             64
  CLUS_3                           15                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       14      7     18
  DEL PEAK  1(1P36.31) WILD-TYPE     57     68     58
D8V9, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           14                             57
  CLUS_2                            7                             68
  CLUS_3                           18                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       15     24      0
  DEL PEAK  1(1P36.31) WILD-TYPE     77     75     31
D8V10, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           15                             77
  CLUS_2                           24                             75
  CLUS_3                            0                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DEL PEAK  2(2P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2P12) MUTATED        5      0      1      2
  DEL PEAK  2(2P12) WILD-TYPE    101     73     48     58
D9V1, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         5                         101
  CLUS_2                         0                          73
  CLUS_3                         1                          48
  CLUS_4                         2                          58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(2P12) MUTATED        1      1      1      0      5      0
  DEL PEAK  2(2P12) WILD-TYPE     55     41     58     57     24     29
D9V2, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         1                          55
  CLUS_2                         1                          41
  CLUS_3                         1                          58
  CLUS_4                         0                          57
  CLUS_5                         5                          24
  CLUS_6                         0                          29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P12) MUTATED        0      4      2
  DEL PEAK  2(2P12) WILD-TYPE     75     78     54
D9V3, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         0                          75
  CLUS_2                         4                          78
  CLUS_3                         2                          54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2P12) MUTATED        0      2      2      2
  DEL PEAK  2(2P12) WILD-TYPE     39     64     63     41
D9V4, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         0                          39
  CLUS_2                         2                          64
  CLUS_3                         2                          63
  CLUS_4                         2                          41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(2P12) MUTATED        0      0      2      1      5
  DEL PEAK  2(2P12) WILD-TYPE     32     90     68     31     59
D9V5, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         0                          32
  CLUS_2                         0                          90
  CLUS_3                         2                          68
  CLUS_4                         1                          31
  CLUS_5                         5                          59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P12) MUTATED        6      1      1
  DEL PEAK  2(2P12) WILD-TYPE    112    122     46
D9V6, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         6                         112
  CLUS_2                         1                         122
  CLUS_3                         1                          46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(2P12) MUTATED        1      2      0      4      0      1
  DEL PEAK  2(2P12) WILD-TYPE     28     35     66     39     80     32
D9V7, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         1                          28
  CLUS_2                         2                          35
  CLUS_3                         0                          66
  CLUS_4                         4                          39
  CLUS_5                         0                          80
  CLUS_6                         1                          32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P12) MUTATED        6      1      1
  DEL PEAK  2(2P12) WILD-TYPE    114     79     87
D9V8, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         6                         114
  CLUS_2                         1                          79
  CLUS_3                         1                          87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P12) MUTATED        2      1      1
  DEL PEAK  2(2P12) WILD-TYPE     69     74     75
D9V9, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         2                          69
  CLUS_2                         1                          74
  CLUS_3                         1                          75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P12) MUTATED        2      2      0
  DEL PEAK  2(2P12) WILD-TYPE     90     97     31
D9V10, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         2                          90
  CLUS_2                         2                          97
  CLUS_3                         0                          31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK  3(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        6      0      0      4
  DEL PEAK  3(2Q22.1) WILD-TYPE    100     73     49     56
D10V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           6                           100
  CLUS_2                           0                            73
  CLUS_3                           0                            49
  CLUS_4                           4                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q22.1) MUTATED        4      0      0      0      4      1
  DEL PEAK  3(2Q22.1) WILD-TYPE     52     42     59     57     25     28
D10V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           4                            52
  CLUS_2                           0                            42
  CLUS_3                           0                            59
  CLUS_4                           0                            57
  CLUS_5                           4                            25
  CLUS_6                           1                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        2      0      5
  DEL PEAK  3(2Q22.1) WILD-TYPE     73     82     51
D10V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            73
  CLUS_2                           0                            82
  CLUS_3                           5                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        2      1      2      2
  DEL PEAK  3(2Q22.1) WILD-TYPE     37     65     63     41
D10V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           1                            65
  CLUS_3                           2                            63
  CLUS_4                           2                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        0      0      1      0      9
  DEL PEAK  3(2Q22.1) WILD-TYPE     32     90     69     32     55
D10V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           0                            32
  CLUS_2                           0                            90
  CLUS_3                           1                            69
  CLUS_4                           0                            32
  CLUS_5                           9                            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        7      0      3
  DEL PEAK  3(2Q22.1) WILD-TYPE    111    123     44
D10V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           7                           111
  CLUS_2                           0                           123
  CLUS_3                           3                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q22.1) MUTATED        4      2      0      2      1      1
  DEL PEAK  3(2Q22.1) WILD-TYPE     25     35     66     41     79     32
D10V7, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           4                            25
  CLUS_2                           2                            35
  CLUS_3                           0                            66
  CLUS_4                           2                            41
  CLUS_5                           1                            79
  CLUS_6                           1                            32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        4      3      3
  DEL PEAK  3(2Q22.1) WILD-TYPE    116     77     85
D10V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           4                           116
  CLUS_2                           3                            77
  CLUS_3                           3                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        4      1      4
  DEL PEAK  3(2Q22.1) WILD-TYPE     67     74     72
D10V9, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           4                            67
  CLUS_2                           1                            74
  CLUS_3                           4                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        3      6      0
  DEL PEAK  3(2Q22.1) WILD-TYPE     89     93     31
D10V10, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           3                            89
  CLUS_2                           6                            93
  CLUS_3                           0                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       10      0      1      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     96     73     48     59
D11V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          10                            96
  CLUS_2                           0                            73
  CLUS_3                           1                            48
  CLUS_4                           1                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        2      2      0      0      5      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     54     40     59     57     24     28
D11V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                            54
  CLUS_2                           2                            40
  CLUS_3                           0                            59
  CLUS_4                           0                            57
  CLUS_5                           5                            24
  CLUS_6                           1                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        0      1      7
  DEL PEAK  4(2Q37.3) WILD-TYPE     75     81     49
D11V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                            75
  CLUS_2                           1                            81
  CLUS_3                           7                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        0      2      2      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     39     64     63     39
D11V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                            39
  CLUS_2                           2                            64
  CLUS_3                           2                            63
  CLUS_4                           4                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED        1      0      4      1      6
  DEL PEAK  4(2Q37.3) WILD-TYPE     31     90     66     31     58
D11V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           1                            31
  CLUS_2                           0                            90
  CLUS_3                           4                            66
  CLUS_4                           1                            31
  CLUS_5                           6                            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        9      0      3
  DEL PEAK  4(2Q37.3) WILD-TYPE    109    123     44
D11V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           9                           109
  CLUS_2                           0                           123
  CLUS_3                           3                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        4      3      0      2      3      0
  DEL PEAK  4(2Q37.3) WILD-TYPE     25     34     66     41     77     33
D11V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           4                            25
  CLUS_2                           3                            34
  CLUS_3                           0                            66
  CLUS_4                           2                            41
  CLUS_5                           3                            77
  CLUS_6                           0                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        7      1      4
  DEL PEAK  4(2Q37.3) WILD-TYPE    113     79     84
D11V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           7                           113
  CLUS_2                           1                            79
  CLUS_3                           4                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        7      1      3
  DEL PEAK  4(2Q37.3) WILD-TYPE     64     74     73
D11V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           7                            64
  CLUS_2                           1                            74
  CLUS_3                           3                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        6      5      0
  DEL PEAK  4(2Q37.3) WILD-TYPE     86     94     31
D11V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           6                            86
  CLUS_2                           5                            94
  CLUS_3                           0                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK  5(3P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P22.1) MUTATED        9      0      1     15
  DEL PEAK  5(3P22.1) WILD-TYPE     97     73     48     45
D12V1, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           9                            97
  CLUS_2                           0                            73
  CLUS_3                           1                            48
  CLUS_4                          15                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P22.1) MUTATED        5      4      0      0     11      4
  DEL PEAK  5(3P22.1) WILD-TYPE     51     38     59     57     18     25
D12V2, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           5                            51
  CLUS_2                           4                            38
  CLUS_3                           0                            59
  CLUS_4                           0                            57
  CLUS_5                          11                            18
  CLUS_6                           4                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       10      6      4
  DEL PEAK  5(3P22.1) WILD-TYPE     65     76     52
D12V3, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          10                            65
  CLUS_2                           6                            76
  CLUS_3                           4                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P22.1) MUTATED        3      4     12      1
  DEL PEAK  5(3P22.1) WILD-TYPE     36     62     53     42
D12V4, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           3                            36
  CLUS_2                           4                            62
  CLUS_3                          12                            53
  CLUS_4                           1                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P22.1) MUTATED        0      0      6      1     18
  DEL PEAK  5(3P22.1) WILD-TYPE     32     90     64     31     46
D12V5, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           0                            32
  CLUS_2                           0                            90
  CLUS_3                           6                            64
  CLUS_4                           1                            31
  CLUS_5                          18                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       21      0      4
  DEL PEAK  5(3P22.1) WILD-TYPE     97    123     43
D12V6, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          21                            97
  CLUS_2                           0                           123
  CLUS_3                           4                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P22.1) MUTATED        1      4      1      9      8      2
  DEL PEAK  5(3P22.1) WILD-TYPE     28     33     65     34     72     31
D12V7, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           1                            28
  CLUS_2                           4                            33
  CLUS_3                           1                            65
  CLUS_4                           9                            34
  CLUS_5                           8                            72
  CLUS_6                           2                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       13      2     10
  DEL PEAK  5(3P22.1) WILD-TYPE    107     78     78
D12V8, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          13                           107
  CLUS_2                           2                            78
  CLUS_3                          10                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       11      3     10
  DEL PEAK  5(3P22.1) WILD-TYPE     60     72     66
D12V9, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          11                            60
  CLUS_2                           3                            72
  CLUS_3                          10                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED        6     18      0
  DEL PEAK  5(3P22.1) WILD-TYPE     86     81     31
D12V10, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           6                            86
  CLUS_2                          18                            81
  CLUS_3                           0                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK  6(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       11      1      7     13
  DEL PEAK  6(4Q34.3) WILD-TYPE     95     72     42     47
D13V1, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          11                            95
  CLUS_2                           1                            72
  CLUS_3                           7                            42
  CLUS_4                          13                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q34.3) MUTATED        4      5      0      2      8     11
  DEL PEAK  6(4Q34.3) WILD-TYPE     52     37     59     55     21     18
D13V2, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           4                            52
  CLUS_2                           5                            37
  CLUS_3                           0                            59
  CLUS_4                           2                            55
  CLUS_5                           8                            21
  CLUS_6                          11                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       11      6      8
  DEL PEAK  6(4Q34.3) WILD-TYPE     64     76     48
D13V3, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          11                            64
  CLUS_2                           6                            76
  CLUS_3                           8                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        2      4     15      4
  DEL PEAK  6(4Q34.3) WILD-TYPE     37     62     50     39
D13V4, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           4                            62
  CLUS_3                          15                            50
  CLUS_4                           4                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q34.3) MUTATED        0      1      7      4     20
  DEL PEAK  6(4Q34.3) WILD-TYPE     32     89     63     28     44
D13V5, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           0                            32
  CLUS_2                           1                            89
  CLUS_3                           7                            63
  CLUS_4                           4                            28
  CLUS_5                          20                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       18      2     12
  DEL PEAK  6(4Q34.3) WILD-TYPE    100    121     35
D13V6, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          18                           100
  CLUS_2                           2                           121
  CLUS_3                          12                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q34.3) MUTATED        2      3      4     11     10      2
  DEL PEAK  6(4Q34.3) WILD-TYPE     27     34     62     32     70     31
D13V7, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           2                            27
  CLUS_2                           3                            34
  CLUS_3                           4                            62
  CLUS_4                          11                            32
  CLUS_5                          10                            70
  CLUS_6                           2                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       14      6     12
  DEL PEAK  6(4Q34.3) WILD-TYPE    106     74     76
D13V8, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          14                           106
  CLUS_2                           6                            74
  CLUS_3                          12                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       11      3     12
  DEL PEAK  6(4Q34.3) WILD-TYPE     60     72     64
D13V9, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          11                            60
  CLUS_2                           3                            72
  CLUS_3                          12                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED        7     19      0
  DEL PEAK  6(4Q34.3) WILD-TYPE     85     80     31
D13V10, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           7                            85
  CLUS_2                          19                            80
  CLUS_3                           0                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK  7(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.33) MUTATED        8      2      3      0
  DEL PEAK  7(5P15.33) WILD-TYPE     98     71     46     60
D14V1, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            8                             98
  CLUS_2                            2                             71
  CLUS_3                            3                             46
  CLUS_4                            0                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5P15.33) MUTATED        1      1      1      2      2      6
  DEL PEAK  7(5P15.33) WILD-TYPE     55     41     58     55     27     23
D14V2, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            1                             55
  CLUS_2                            1                             41
  CLUS_3                            1                             58
  CLUS_4                            2                             55
  CLUS_5                            2                             27
  CLUS_6                            6                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.33) MUTATED        5      3      3
  DEL PEAK  7(5P15.33) WILD-TYPE     70     79     53
D14V3, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            5                             70
  CLUS_2                            3                             79
  CLUS_3                            3                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.33) MUTATED        1      3      7      0
  DEL PEAK  7(5P15.33) WILD-TYPE     38     63     58     43
D14V4, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            1                             38
  CLUS_2                            3                             63
  CLUS_3                            7                             58
  CLUS_4                            0                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5P15.33) MUTATED        0      1      4      5      3
  DEL PEAK  7(5P15.33) WILD-TYPE     32     89     66     27     61
D14V5, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            0                             32
  CLUS_2                            1                             89
  CLUS_3                            4                             66
  CLUS_4                            5                             27
  CLUS_5                            3                             61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.33) MUTATED        5      1      7
  DEL PEAK  7(5P15.33) WILD-TYPE    113    122     40
D14V6, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            5                            113
  CLUS_2                            1                            122
  CLUS_3                            7                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5P15.33) MUTATED        0      4      2      1      5      1
  DEL PEAK  7(5P15.33) WILD-TYPE     29     33     64     42     75     32
D14V7, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            0                             29
  CLUS_2                            4                             33
  CLUS_3                            2                             64
  CLUS_4                            1                             42
  CLUS_5                            5                             75
  CLUS_6                            1                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.33) MUTATED        4      2      7
  DEL PEAK  7(5P15.33) WILD-TYPE    116     78     81
D14V8, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            4                            116
  CLUS_2                            2                             78
  CLUS_3                            7                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.33) MUTATED        3      2      6
  DEL PEAK  7(5P15.33) WILD-TYPE     68     73     70
D14V9, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            3                             68
  CLUS_2                            2                             73
  CLUS_3                            6                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.33) MUTATED        3      7      1
  DEL PEAK  7(5P15.33) WILD-TYPE     89     92     30
D14V10, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            3                             89
  CLUS_2                            7                             92
  CLUS_3                            1                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK  8(5Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q35.2) MUTATED        6      0      4      1
  DEL PEAK  8(5Q35.2) WILD-TYPE    100     73     45     59
D15V1, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           6                           100
  CLUS_2                           0                            73
  CLUS_3                           4                            45
  CLUS_4                           1                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q35.2) MUTATED        1      1      0      0      0      8
  DEL PEAK  8(5Q35.2) WILD-TYPE     55     41     59     57     29     21
D15V2, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           1                            55
  CLUS_2                           1                            41
  CLUS_3                           0                            59
  CLUS_4                           0                            57
  CLUS_5                           0                            29
  CLUS_6                           8                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q35.2) MUTATED        5      0      3
  DEL PEAK  8(5Q35.2) WILD-TYPE     70     82     53
D15V3, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           5                            70
  CLUS_2                           0                            82
  CLUS_3                           3                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q35.2) MUTATED        0      0      8      0
  DEL PEAK  8(5Q35.2) WILD-TYPE     39     66     57     43
D15V4, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           0                            39
  CLUS_2                           0                            66
  CLUS_3                           8                            57
  CLUS_4                           0                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q35.2) MUTATED        0      0      1      5      5
  DEL PEAK  8(5Q35.2) WILD-TYPE     32     90     69     27     59
D15V5, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           0                            32
  CLUS_2                           0                            90
  CLUS_3                           1                            69
  CLUS_4                           5                            27
  CLUS_5                           5                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q35.2) MUTATED        3      0      8
  DEL PEAK  8(5Q35.2) WILD-TYPE    115    123     39
D15V6, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           3                           115
  CLUS_2                           0                           123
  CLUS_3                           8                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q35.2) MUTATED        1      1      0      2      7      0
  DEL PEAK  8(5Q35.2) WILD-TYPE     28     36     66     41     73     33
D15V7, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           1                            28
  CLUS_2                           1                            36
  CLUS_3                           0                            66
  CLUS_4                           2                            41
  CLUS_5                           7                            73
  CLUS_6                           0                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q35.2) MUTATED        2      0      9
  DEL PEAK  8(5Q35.2) WILD-TYPE    118     80     79
D15V8, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           2                           118
  CLUS_2                           0                            80
  CLUS_3                           9                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q35.2) MUTATED        2      0      8
  DEL PEAK  8(5Q35.2) WILD-TYPE     69     75     68
D15V9, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           2                            69
  CLUS_2                           0                            75
  CLUS_3                           8                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q35.2) MUTATED        1      9      0
  DEL PEAK  8(5Q35.2) WILD-TYPE     91     90     31
D15V10, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           1                            91
  CLUS_2                           9                            90
  CLUS_3                           0                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK  9(6P12.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P12.3) MUTATED        7      2      8      9
  DEL PEAK  9(6P12.3) WILD-TYPE     99     71     41     51
D16V1, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           7                            99
  CLUS_2                           2                            71
  CLUS_3                           8                            41
  CLUS_4                           9                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P12.3) MUTATED        4      2      0      2      8      9
  DEL PEAK  9(6P12.3) WILD-TYPE     52     40     59     55     21     20
D16V2, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           4                            52
  CLUS_2                           2                            40
  CLUS_3                           0                            59
  CLUS_4                           2                            55
  CLUS_5                           8                            21
  CLUS_6                           9                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        7      8      5
  DEL PEAK  9(6P12.3) WILD-TYPE     68     74     51
D16V3, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           7                            68
  CLUS_2                           8                            74
  CLUS_3                           5                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P12.3) MUTATED        2      6     10      2
  DEL PEAK  9(6P12.3) WILD-TYPE     37     60     55     41
D16V4, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           6                            60
  CLUS_3                          10                            55
  CLUS_4                           2                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6P12.3) MUTATED        0      3      5      1     17
  DEL PEAK  9(6P12.3) WILD-TYPE     32     87     65     31     47
D16V5, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           0                            32
  CLUS_2                           3                            87
  CLUS_3                           5                            65
  CLUS_4                           1                            31
  CLUS_5                          17                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED       12      4     10
  DEL PEAK  9(6P12.3) WILD-TYPE    106    119     37
D16V6, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                          12                           106
  CLUS_2                           4                           119
  CLUS_3                          10                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P12.3) MUTATED        3      4      5      7      6      1
  DEL PEAK  9(6P12.3) WILD-TYPE     26     33     61     36     74     32
D16V7, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           3                            26
  CLUS_2                           4                            33
  CLUS_3                           5                            61
  CLUS_4                           7                            36
  CLUS_5                           6                            74
  CLUS_6                           1                            32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED       11      9      6
  DEL PEAK  9(6P12.3) WILD-TYPE    109     71     82
D16V8, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                          11                           109
  CLUS_2                           9                            71
  CLUS_3                           6                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        4      5      9
  DEL PEAK  9(6P12.3) WILD-TYPE     67     70     67
D16V9, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           4                            67
  CLUS_2                           5                            70
  CLUS_3                           9                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        8     10      0
  DEL PEAK  9(6P12.3) WILD-TYPE     84     89     31
D16V10, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           8                            84
  CLUS_2                          10                            89
  CLUS_3                           0                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK 10(6Q25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q25.3) MUTATED       11      2      8     11
  DEL PEAK 10(6Q25.3) WILD-TYPE     95     71     41     49
D17V1, multiclass
        clus
vv       DEL PEAK 10(6Q25.3) MUTATED DEL PEAK 10(6Q25.3) WILD-TYPE
  CLUS_1                          11                            95
  CLUS_2                           2                            71
  CLUS_3                           8                            41
  CLUS_4                          11                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q25.3) MUTATED        6      2      0      2     11     10
  DEL PEAK 10(6Q25.3) WILD-TYPE     50     40     59     55     18     19
D17V2, multiclass
        clus
vv       DEL PEAK 10(6Q25.3) MUTATED DEL PEAK 10(6Q25.3) WILD-TYPE
  CLUS_1                           6                            50
  CLUS_2                           2                            40
  CLUS_3                           0                            59
  CLUS_4                           2                            55
  CLUS_5                          11                            18
  CLUS_6                          10                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q25.3) MUTATED       10      8      8
  DEL PEAK 10(6Q25.3) WILD-TYPE     65     74     48
D17V3, multiclass
        clus
vv       DEL PEAK 10(6Q25.3) MUTATED DEL PEAK 10(6Q25.3) WILD-TYPE
  CLUS_1                          10                            65
  CLUS_2                           8                            74
  CLUS_3                           8                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q25.3) MUTATED        4      5     15      2
  DEL PEAK 10(6Q25.3) WILD-TYPE     35     61     50     41
D17V4, multiclass
        clus
vv       DEL PEAK 10(6Q25.3) MUTATED DEL PEAK 10(6Q25.3) WILD-TYPE
  CLUS_1                           4                            35
  CLUS_2                           5                            61
  CLUS_3                          15                            50
  CLUS_4                           2                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q25.3) MUTATED        0      2      6      2     22
  DEL PEAK 10(6Q25.3) WILD-TYPE     32     88     64     30     42
D17V5, multiclass
        clus
vv       DEL PEAK 10(6Q25.3) MUTATED DEL PEAK 10(6Q25.3) WILD-TYPE
  CLUS_1                           0                            32
  CLUS_2                           2                            88
  CLUS_3                           6                            64
  CLUS_4                           2                            30
  CLUS_5                          22                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q25.3) MUTATED       17      3     12
  DEL PEAK 10(6Q25.3) WILD-TYPE    101    120     35
D17V6, multiclass
        clus
vv       DEL PEAK 10(6Q25.3) MUTATED DEL PEAK 10(6Q25.3) WILD-TYPE
  CLUS_1                          17                           101
  CLUS_2                           3                           120
  CLUS_3                          12                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q25.3) MUTATED        4      5      5     10      8      0
  DEL PEAK 10(6Q25.3) WILD-TYPE     25     32     61     33     72     33
D17V7, multiclass
        clus
vv       DEL PEAK 10(6Q25.3) MUTATED DEL PEAK 10(6Q25.3) WILD-TYPE
  CLUS_1                           4                            25
  CLUS_2                           5                            32
  CLUS_3                           5                            61
  CLUS_4                          10                            33
  CLUS_5                           8                            72
  CLUS_6                           0                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q25.3) MUTATED       13      9     10
  DEL PEAK 10(6Q25.3) WILD-TYPE    107     71     78
D17V8, multiclass
        clus
vv       DEL PEAK 10(6Q25.3) MUTATED DEL PEAK 10(6Q25.3) WILD-TYPE
  CLUS_1                          13                           107
  CLUS_2                           9                            71
  CLUS_3                          10                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q25.3) MUTATED        4      6     13
  DEL PEAK 10(6Q25.3) WILD-TYPE     67     69     63
D17V9, multiclass
        clus
vv       DEL PEAK 10(6Q25.3) MUTATED DEL PEAK 10(6Q25.3) WILD-TYPE
  CLUS_1                           4                            67
  CLUS_2                           6                            69
  CLUS_3                          13                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q25.3) MUTATED        9     14      0
  DEL PEAK 10(6Q25.3) WILD-TYPE     83     85     31
D17V10, multiclass
        clus
vv       DEL PEAK 10(6Q25.3) MUTATED DEL PEAK 10(6Q25.3) WILD-TYPE
  CLUS_1                           9                            83
  CLUS_2                          14                            85
  CLUS_3                           0                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK 11(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P21.3) MUTATED       19      3      4     14
  DEL PEAK 11(9P21.3) WILD-TYPE     87     70     45     46
D18V1, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          19                            87
  CLUS_2                           3                            70
  CLUS_3                           4                            45
  CLUS_4                          14                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(9P21.3) MUTATED        8      3      1      1      9     15
  DEL PEAK 11(9P21.3) WILD-TYPE     48     39     58     56     20     14
D18V2, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           8                            48
  CLUS_2                           3                            39
  CLUS_3                           1                            58
  CLUS_4                           1                            56
  CLUS_5                           9                            20
  CLUS_6                          15                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(9P21.3) MUTATED       14      9      7
  DEL PEAK 11(9P21.3) WILD-TYPE     61     73     49
D18V3, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          14                            61
  CLUS_2                           9                            73
  CLUS_3                           7                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P21.3) MUTATED        3      5     19      3
  DEL PEAK 11(9P21.3) WILD-TYPE     36     61     46     40
D18V4, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           3                            36
  CLUS_2                           5                            61
  CLUS_3                          19                            46
  CLUS_4                           3                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(9P21.3) MUTATED        1      1      5      5     28
  DEL PEAK 11(9P21.3) WILD-TYPE     31     89     65     27     36
D18V5, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           1                            31
  CLUS_2                           1                            89
  CLUS_3                           5                            65
  CLUS_4                           5                            27
  CLUS_5                          28                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(9P21.3) MUTATED       20      0     20
  DEL PEAK 11(9P21.3) WILD-TYPE     98    123     27
D18V6, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          20                            98
  CLUS_2                           0                           123
  CLUS_3                          20                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(9P21.3) MUTATED        4      4      4     11     16      1
  DEL PEAK 11(9P21.3) WILD-TYPE     25     33     62     32     64     32
D18V7, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           4                            25
  CLUS_2                           4                            33
  CLUS_3                           4                            62
  CLUS_4                          11                            32
  CLUS_5                          16                            64
  CLUS_6                           1                            32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(9P21.3) MUTATED       10     10     20
  DEL PEAK 11(9P21.3) WILD-TYPE    110     70     68
D18V8, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          10                           110
  CLUS_2                          10                            70
  CLUS_3                          20                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(9P21.3) MUTATED        9      4     20
  DEL PEAK 11(9P21.3) WILD-TYPE     62     71     56
D18V9, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           9                            62
  CLUS_2                           4                            71
  CLUS_3                          20                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(9P21.3) MUTATED        7     26      0
  DEL PEAK 11(9P21.3) WILD-TYPE     85     73     31
D18V10, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           7                            85
  CLUS_2                          26                            73
  CLUS_3                           0                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 12(10Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(10Q21.1) MUTATED        9      1      3      6
  DEL PEAK 12(10Q21.1) WILD-TYPE     97     72     46     54
D19V1, multiclass
        clus
vv       DEL PEAK 12(10Q21.1) MUTATED DEL PEAK 12(10Q21.1) WILD-TYPE
  CLUS_1                            9                             97
  CLUS_2                            1                             72
  CLUS_3                            3                             46
  CLUS_4                            6                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(10Q21.1) MUTATED        2      3      0      2      7      5
  DEL PEAK 12(10Q21.1) WILD-TYPE     54     39     59     55     22     24
D19V2, multiclass
        clus
vv       DEL PEAK 12(10Q21.1) MUTATED DEL PEAK 12(10Q21.1) WILD-TYPE
  CLUS_1                            2                             54
  CLUS_2                            3                             39
  CLUS_3                            0                             59
  CLUS_4                            2                             55
  CLUS_5                            7                             22
  CLUS_6                            5                             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(10Q21.1) MUTATED        7      5      4
  DEL PEAK 12(10Q21.1) WILD-TYPE     68     77     52
D19V3, multiclass
        clus
vv       DEL PEAK 12(10Q21.1) MUTATED DEL PEAK 12(10Q21.1) WILD-TYPE
  CLUS_1                            7                             68
  CLUS_2                            5                             77
  CLUS_3                            4                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(10Q21.1) MUTATED        1      4     10      1
  DEL PEAK 12(10Q21.1) WILD-TYPE     38     62     55     42
D19V4, multiclass
        clus
vv       DEL PEAK 12(10Q21.1) MUTATED DEL PEAK 12(10Q21.1) WILD-TYPE
  CLUS_1                            1                             38
  CLUS_2                            4                             62
  CLUS_3                           10                             55
  CLUS_4                            1                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(10Q21.1) MUTATED        0      0      5      1     13
  DEL PEAK 12(10Q21.1) WILD-TYPE     32     90     65     31     51
D19V5, multiclass
        clus
vv       DEL PEAK 12(10Q21.1) MUTATED DEL PEAK 12(10Q21.1) WILD-TYPE
  CLUS_1                            0                             32
  CLUS_2                            0                             90
  CLUS_3                            5                             65
  CLUS_4                            1                             31
  CLUS_5                           13                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(10Q21.1) MUTATED       13      1      5
  DEL PEAK 12(10Q21.1) WILD-TYPE    105    122     42
D19V6, multiclass
        clus
vv       DEL PEAK 12(10Q21.1) MUTATED DEL PEAK 12(10Q21.1) WILD-TYPE
  CLUS_1                           13                            105
  CLUS_2                            1                            122
  CLUS_3                            5                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(10Q21.1) MUTATED        2      4      0      6      6      1
  DEL PEAK 12(10Q21.1) WILD-TYPE     27     33     66     37     74     32
D19V7, multiclass
        clus
vv       DEL PEAK 12(10Q21.1) MUTATED DEL PEAK 12(10Q21.1) WILD-TYPE
  CLUS_1                            2                             27
  CLUS_2                            4                             33
  CLUS_3                            0                             66
  CLUS_4                            6                             37
  CLUS_5                            6                             74
  CLUS_6                            1                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(10Q21.1) MUTATED        9      4      6
  DEL PEAK 12(10Q21.1) WILD-TYPE    111     76     82
D19V8, multiclass
        clus
vv       DEL PEAK 12(10Q21.1) MUTATED DEL PEAK 12(10Q21.1) WILD-TYPE
  CLUS_1                            9                            111
  CLUS_2                            4                             76
  CLUS_3                            6                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(10Q21.1) MUTATED        5      1      8
  DEL PEAK 12(10Q21.1) WILD-TYPE     66     74     68
D19V9, multiclass
        clus
vv       DEL PEAK 12(10Q21.1) MUTATED DEL PEAK 12(10Q21.1) WILD-TYPE
  CLUS_1                            5                             66
  CLUS_2                            1                             74
  CLUS_3                            8                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(10Q21.1) MUTATED        2     12      0
  DEL PEAK 12(10Q21.1) WILD-TYPE     90     87     31
D19V10, multiclass
        clus
vv       DEL PEAK 12(10Q21.1) MUTATED DEL PEAK 12(10Q21.1) WILD-TYPE
  CLUS_1                            2                             90
  CLUS_2                           12                             87
  CLUS_3                            0                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 13(11Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(11Q22.3) MUTATED       13      4      4     10
  DEL PEAK 13(11Q22.3) WILD-TYPE     93     69     45     50
D20V1, multiclass
        clus
vv       DEL PEAK 13(11Q22.3) MUTATED DEL PEAK 13(11Q22.3) WILD-TYPE
  CLUS_1                           13                             93
  CLUS_2                            4                             69
  CLUS_3                            4                             45
  CLUS_4                           10                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(11Q22.3) MUTATED        7      3      2      4      9      5
  DEL PEAK 13(11Q22.3) WILD-TYPE     49     39     57     53     20     24
D20V2, multiclass
        clus
vv       DEL PEAK 13(11Q22.3) MUTATED DEL PEAK 13(11Q22.3) WILD-TYPE
  CLUS_1                            7                             49
  CLUS_2                            3                             39
  CLUS_3                            2                             57
  CLUS_4                            4                             53
  CLUS_5                            9                             20
  CLUS_6                            5                             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(11Q22.3) MUTATED       11      8      6
  DEL PEAK 13(11Q22.3) WILD-TYPE     64     74     50
D20V3, multiclass
        clus
vv       DEL PEAK 13(11Q22.3) MUTATED DEL PEAK 13(11Q22.3) WILD-TYPE
  CLUS_1                           11                             64
  CLUS_2                            8                             74
  CLUS_3                            6                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(11Q22.3) MUTATED        4      4     13      4
  DEL PEAK 13(11Q22.3) WILD-TYPE     35     62     52     39
D20V4, multiclass
        clus
vv       DEL PEAK 13(11Q22.3) MUTATED DEL PEAK 13(11Q22.3) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                            4                             62
  CLUS_3                           13                             52
  CLUS_4                            4                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(11Q22.3) MUTATED        1      3      6      3     18
  DEL PEAK 13(11Q22.3) WILD-TYPE     31     87     64     29     46
D20V5, multiclass
        clus
vv       DEL PEAK 13(11Q22.3) MUTATED DEL PEAK 13(11Q22.3) WILD-TYPE
  CLUS_1                            1                             31
  CLUS_2                            3                             87
  CLUS_3                            6                             64
  CLUS_4                            3                             29
  CLUS_5                           18                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(11Q22.3) MUTATED       17      5      9
  DEL PEAK 13(11Q22.3) WILD-TYPE    101    118     38
D20V6, multiclass
        clus
vv       DEL PEAK 13(11Q22.3) MUTATED DEL PEAK 13(11Q22.3) WILD-TYPE
  CLUS_1                           17                            101
  CLUS_2                            5                            118
  CLUS_3                            9                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(11Q22.3) MUTATED        2      2      5      8     13      1
  DEL PEAK 13(11Q22.3) WILD-TYPE     27     35     61     35     67     32
D20V7, multiclass
        clus
vv       DEL PEAK 13(11Q22.3) MUTATED DEL PEAK 13(11Q22.3) WILD-TYPE
  CLUS_1                            2                             27
  CLUS_2                            2                             35
  CLUS_3                            5                             61
  CLUS_4                            8                             35
  CLUS_5                           13                             67
  CLUS_6                            1                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(11Q22.3) MUTATED       13      6     12
  DEL PEAK 13(11Q22.3) WILD-TYPE    107     74     76
D20V8, multiclass
        clus
vv       DEL PEAK 13(11Q22.3) MUTATED DEL PEAK 13(11Q22.3) WILD-TYPE
  CLUS_1                           13                            107
  CLUS_2                            6                             74
  CLUS_3                           12                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(11Q22.3) MUTATED        6      3     15
  DEL PEAK 13(11Q22.3) WILD-TYPE     65     72     61
D20V9, multiclass
        clus
vv       DEL PEAK 13(11Q22.3) MUTATED DEL PEAK 13(11Q22.3) WILD-TYPE
  CLUS_1                            6                             65
  CLUS_2                            3                             72
  CLUS_3                           15                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(11Q22.3) MUTATED        6     18      0
  DEL PEAK 13(11Q22.3) WILD-TYPE     86     81     31
D20V10, multiclass
        clus
vv       DEL PEAK 13(11Q22.3) MUTATED DEL PEAK 13(11Q22.3) WILD-TYPE
  CLUS_1                            6                             86
  CLUS_2                           18                             81
  CLUS_3                            0                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK 14(11Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q23.3) MUTATED       11      4      4     10
  DEL PEAK 14(11Q23.3) WILD-TYPE     95     69     45     50
D21V1, multiclass
        clus
vv       DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE
  CLUS_1                           11                             95
  CLUS_2                            4                             69
  CLUS_3                            4                             45
  CLUS_4                           10                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(11Q23.3) MUTATED        6      3      1      3      9      6
  DEL PEAK 14(11Q23.3) WILD-TYPE     50     39     58     54     20     23
D21V2, multiclass
        clus
vv       DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE
  CLUS_1                            6                             50
  CLUS_2                            3                             39
  CLUS_3                            1                             58
  CLUS_4                            3                             54
  CLUS_5                            9                             20
  CLUS_6                            6                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q23.3) MUTATED       11      6      6
  DEL PEAK 14(11Q23.3) WILD-TYPE     64     76     50
D21V3, multiclass
        clus
vv       DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE
  CLUS_1                           11                             64
  CLUS_2                            6                             76
  CLUS_3                            6                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q23.3) MUTATED        3      3     13      4
  DEL PEAK 14(11Q23.3) WILD-TYPE     36     63     52     39
D21V4, multiclass
        clus
vv       DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            3                             63
  CLUS_3                           13                             52
  CLUS_4                            4                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(11Q23.3) MUTATED        1      2      6      3     17
  DEL PEAK 14(11Q23.3) WILD-TYPE     31     88     64     29     47
D21V5, multiclass
        clus
vv       DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE
  CLUS_1                            1                             31
  CLUS_2                            2                             88
  CLUS_3                            6                             64
  CLUS_4                            3                             29
  CLUS_5                           17                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q23.3) MUTATED       17      4      8
  DEL PEAK 14(11Q23.3) WILD-TYPE    101    119     39
D21V6, multiclass
        clus
vv       DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE
  CLUS_1                           17                            101
  CLUS_2                            4                            119
  CLUS_3                            8                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(11Q23.3) MUTATED        2      2      3      9     12      1
  DEL PEAK 14(11Q23.3) WILD-TYPE     27     35     63     34     68     32
D21V7, multiclass
        clus
vv       DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE
  CLUS_1                            2                             27
  CLUS_2                            2                             35
  CLUS_3                            3                             63
  CLUS_4                            9                             34
  CLUS_5                           12                             68
  CLUS_6                            1                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q23.3) MUTATED       13      5     11
  DEL PEAK 14(11Q23.3) WILD-TYPE    107     75     77
D21V8, multiclass
        clus
vv       DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE
  CLUS_1                           13                            107
  CLUS_2                            5                             75
  CLUS_3                           11                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q23.3) MUTATED        6      3     14
  DEL PEAK 14(11Q23.3) WILD-TYPE     65     72     62
D21V9, multiclass
        clus
vv       DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE
  CLUS_1                            6                             65
  CLUS_2                            3                             72
  CLUS_3                           14                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q23.3) MUTATED        6     17      0
  DEL PEAK 14(11Q23.3) WILD-TYPE     86     82     31
D21V10, multiclass
        clus
vv       DEL PEAK 14(11Q23.3) MUTATED DEL PEAK 14(11Q23.3) WILD-TYPE
  CLUS_1                            6                             86
  CLUS_2                           17                             82
  CLUS_3                            0                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK 15(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(14Q11.2) MUTATED       23      2     10     16
  DEL PEAK 15(14Q11.2) WILD-TYPE     83     71     39     44
D22V1, multiclass
        clus
vv       DEL PEAK 15(14Q11.2) MUTATED DEL PEAK 15(14Q11.2) WILD-TYPE
  CLUS_1                           23                             83
  CLUS_2                            2                             71
  CLUS_3                           10                             39
  CLUS_4                           16                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(14Q11.2) MUTATED       13      5      4      5      8     11
  DEL PEAK 15(14Q11.2) WILD-TYPE     43     37     55     52     21     18
D22V2, multiclass
        clus
vv       DEL PEAK 15(14Q11.2) MUTATED DEL PEAK 15(14Q11.2) WILD-TYPE
  CLUS_1                           13                             43
  CLUS_2                            5                             37
  CLUS_3                            4                             55
  CLUS_4                            5                             52
  CLUS_5                            8                             21
  CLUS_6                           11                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(14Q11.2) MUTATED       19     10      7
  DEL PEAK 15(14Q11.2) WILD-TYPE     56     72     49
D22V3, multiclass
        clus
vv       DEL PEAK 15(14Q11.2) MUTATED DEL PEAK 15(14Q11.2) WILD-TYPE
  CLUS_1                           19                             56
  CLUS_2                           10                             72
  CLUS_3                            7                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(14Q11.2) MUTATED        6      7     20      3
  DEL PEAK 15(14Q11.2) WILD-TYPE     33     59     45     40
D22V4, multiclass
        clus
vv       DEL PEAK 15(14Q11.2) MUTATED DEL PEAK 15(14Q11.2) WILD-TYPE
  CLUS_1                            6                             33
  CLUS_2                            7                             59
  CLUS_3                           20                             45
  CLUS_4                            3                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(14Q11.2) MUTATED        4      4     11      6     26
  DEL PEAK 15(14Q11.2) WILD-TYPE     28     86     59     26     38
D22V5, multiclass
        clus
vv       DEL PEAK 15(14Q11.2) MUTATED DEL PEAK 15(14Q11.2) WILD-TYPE
  CLUS_1                            4                             28
  CLUS_2                            4                             86
  CLUS_3                           11                             59
  CLUS_4                            6                             26
  CLUS_5                           26                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(14Q11.2) MUTATED       24      8     19
  DEL PEAK 15(14Q11.2) WILD-TYPE     94    115     28
D22V6, multiclass
        clus
vv       DEL PEAK 15(14Q11.2) MUTATED DEL PEAK 15(14Q11.2) WILD-TYPE
  CLUS_1                           24                             94
  CLUS_2                            8                            115
  CLUS_3                           19                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(14Q11.2) MUTATED        3      5      8     13     18      4
  DEL PEAK 15(14Q11.2) WILD-TYPE     26     32     58     30     62     29
D22V7, multiclass
        clus
vv       DEL PEAK 15(14Q11.2) MUTATED DEL PEAK 15(14Q11.2) WILD-TYPE
  CLUS_1                            3                             26
  CLUS_2                            5                             32
  CLUS_3                            8                             58
  CLUS_4                           13                             30
  CLUS_5                           18                             62
  CLUS_6                            4                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(14Q11.2) MUTATED       21     15     15
  DEL PEAK 15(14Q11.2) WILD-TYPE     99     65     73
D22V8, multiclass
        clus
vv       DEL PEAK 15(14Q11.2) MUTATED DEL PEAK 15(14Q11.2) WILD-TYPE
  CLUS_1                           21                             99
  CLUS_2                           15                             65
  CLUS_3                           15                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(14Q11.2) MUTATED       13      7     18
  DEL PEAK 15(14Q11.2) WILD-TYPE     58     68     58
D22V9, multiclass
        clus
vv       DEL PEAK 15(14Q11.2) MUTATED DEL PEAK 15(14Q11.2) WILD-TYPE
  CLUS_1                           13                             58
  CLUS_2                            7                             68
  CLUS_3                           18                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(14Q11.2) MUTATED       11     25      2
  DEL PEAK 15(14Q11.2) WILD-TYPE     81     74     29
D22V10, multiclass
        clus
vv       DEL PEAK 15(14Q11.2) MUTATED DEL PEAK 15(14Q11.2) WILD-TYPE
  CLUS_1                           11                             81
  CLUS_2                           25                             74
  CLUS_3                            2                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK 16(14Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(14Q24.2) MUTATED       23      1      8     18
  DEL PEAK 16(14Q24.2) WILD-TYPE     83     72     41     42
D23V1, multiclass
        clus
vv       DEL PEAK 16(14Q24.2) MUTATED DEL PEAK 16(14Q24.2) WILD-TYPE
  CLUS_1                           23                             83
  CLUS_2                            1                             72
  CLUS_3                            8                             41
  CLUS_4                           18                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(14Q24.2) MUTATED       15      4      3      4      9     11
  DEL PEAK 16(14Q24.2) WILD-TYPE     41     38     56     53     20     18
D23V2, multiclass
        clus
vv       DEL PEAK 16(14Q24.2) MUTATED DEL PEAK 16(14Q24.2) WILD-TYPE
  CLUS_1                           15                             41
  CLUS_2                            4                             38
  CLUS_3                            3                             56
  CLUS_4                            4                             53
  CLUS_5                            9                             20
  CLUS_6                           11                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q24.2) MUTATED       20      9      7
  DEL PEAK 16(14Q24.2) WILD-TYPE     55     73     49
D23V3, multiclass
        clus
vv       DEL PEAK 16(14Q24.2) MUTATED DEL PEAK 16(14Q24.2) WILD-TYPE
  CLUS_1                           20                             55
  CLUS_2                            9                             73
  CLUS_3                            7                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(14Q24.2) MUTATED        7      6     20      3
  DEL PEAK 16(14Q24.2) WILD-TYPE     32     60     45     40
D23V4, multiclass
        clus
vv       DEL PEAK 16(14Q24.2) MUTATED DEL PEAK 16(14Q24.2) WILD-TYPE
  CLUS_1                            7                             32
  CLUS_2                            6                             60
  CLUS_3                           20                             45
  CLUS_4                            3                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(14Q24.2) MUTATED        4      3      9      7     27
  DEL PEAK 16(14Q24.2) WILD-TYPE     28     87     61     25     37
D23V5, multiclass
        clus
vv       DEL PEAK 16(14Q24.2) MUTATED DEL PEAK 16(14Q24.2) WILD-TYPE
  CLUS_1                            4                             28
  CLUS_2                            3                             87
  CLUS_3                            9                             61
  CLUS_4                            7                             25
  CLUS_5                           27                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q24.2) MUTATED       24      7     19
  DEL PEAK 16(14Q24.2) WILD-TYPE     94    116     28
D23V6, multiclass
        clus
vv       DEL PEAK 16(14Q24.2) MUTATED DEL PEAK 16(14Q24.2) WILD-TYPE
  CLUS_1                           24                             94
  CLUS_2                            7                            116
  CLUS_3                           19                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(14Q24.2) MUTATED        2      5      7     14     18      4
  DEL PEAK 16(14Q24.2) WILD-TYPE     27     32     59     29     62     29
D23V7, multiclass
        clus
vv       DEL PEAK 16(14Q24.2) MUTATED DEL PEAK 16(14Q24.2) WILD-TYPE
  CLUS_1                            2                             27
  CLUS_2                            5                             32
  CLUS_3                            7                             59
  CLUS_4                           14                             29
  CLUS_5                           18                             62
  CLUS_6                            4                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q24.2) MUTATED       21     14     15
  DEL PEAK 16(14Q24.2) WILD-TYPE     99     66     73
D23V8, multiclass
        clus
vv       DEL PEAK 16(14Q24.2) MUTATED DEL PEAK 16(14Q24.2) WILD-TYPE
  CLUS_1                           21                             99
  CLUS_2                           14                             66
  CLUS_3                           15                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q24.2) MUTATED       14      6     19
  DEL PEAK 16(14Q24.2) WILD-TYPE     57     69     57
D23V9, multiclass
        clus
vv       DEL PEAK 16(14Q24.2) MUTATED DEL PEAK 16(14Q24.2) WILD-TYPE
  CLUS_1                           14                             57
  CLUS_2                            6                             69
  CLUS_3                           19                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q24.2) MUTATED       12     26      1
  DEL PEAK 16(14Q24.2) WILD-TYPE     80     73     30
D23V10, multiclass
        clus
vv       DEL PEAK 16(14Q24.2) MUTATED DEL PEAK 16(14Q24.2) WILD-TYPE
  CLUS_1                           12                             80
  CLUS_2                           26                             73
  CLUS_3                            1                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK 17(15Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(15Q13.3) MUTATED       14      2      5     14
  DEL PEAK 17(15Q13.3) WILD-TYPE     92     71     44     46
D24V1, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                           14                             92
  CLUS_2                            2                             71
  CLUS_3                            5                             44
  CLUS_4                           14                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(15Q13.3) MUTATED       10      3      1      3      5     11
  DEL PEAK 17(15Q13.3) WILD-TYPE     46     39     58     54     24     18
D24V2, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                           10                             46
  CLUS_2                            3                             39
  CLUS_3                            1                             58
  CLUS_4                            3                             54
  CLUS_5                            5                             24
  CLUS_6                           11                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(15Q13.3) MUTATED       15      7      7
  DEL PEAK 17(15Q13.3) WILD-TYPE     60     75     49
D24V3, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                           15                             60
  CLUS_2                            7                             75
  CLUS_3                            7                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(15Q13.3) MUTATED        4      5     16      4
  DEL PEAK 17(15Q13.3) WILD-TYPE     35     61     49     39
D24V4, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                            5                             61
  CLUS_3                           16                             49
  CLUS_4                            4                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(15Q13.3) MUTATED        1      3      6      5     20
  DEL PEAK 17(15Q13.3) WILD-TYPE     31     87     64     27     44
D24V5, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                            1                             31
  CLUS_2                            3                             87
  CLUS_3                            6                             64
  CLUS_4                            5                             27
  CLUS_5                           20                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(15Q13.3) MUTATED       16      4     15
  DEL PEAK 17(15Q13.3) WILD-TYPE    102    119     32
D24V6, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                           16                            102
  CLUS_2                            4                            119
  CLUS_3                           15                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(15Q13.3) MUTATED        3      5      4      8     14      1
  DEL PEAK 17(15Q13.3) WILD-TYPE     26     32     62     35     66     32
D24V7, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                            3                             26
  CLUS_2                            5                             32
  CLUS_3                            4                             62
  CLUS_4                            8                             35
  CLUS_5                           14                             66
  CLUS_6                            1                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(15Q13.3) MUTATED        9     12     14
  DEL PEAK 17(15Q13.3) WILD-TYPE    111     68     74
D24V8, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                            9                            111
  CLUS_2                           12                             68
  CLUS_3                           14                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(15Q13.3) MUTATED        8      6     15
  DEL PEAK 17(15Q13.3) WILD-TYPE     63     69     61
D24V9, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                            8                             63
  CLUS_2                            6                             69
  CLUS_3                           15                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(15Q13.3) MUTATED       11     18      0
  DEL PEAK 17(15Q13.3) WILD-TYPE     81     81     31
D24V10, multiclass
        clus
vv       DEL PEAK 17(15Q13.3) MUTATED DEL PEAK 17(15Q13.3) WILD-TYPE
  CLUS_1                           11                             81
  CLUS_2                           18                             81
  CLUS_3                            0                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK 18(16Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(16Q24.2) MUTATED        5      2      0      5
  DEL PEAK 18(16Q24.2) WILD-TYPE    101     71     49     55
D25V1, multiclass
        clus
vv       DEL PEAK 18(16Q24.2) MUTATED DEL PEAK 18(16Q24.2) WILD-TYPE
  CLUS_1                            5                            101
  CLUS_2                            2                             71
  CLUS_3                            0                             49
  CLUS_4                            5                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(16Q24.2) MUTATED        2      3      0      0      3      4
  DEL PEAK 18(16Q24.2) WILD-TYPE     54     39     59     57     26     25
D25V2, multiclass
        clus
vv       DEL PEAK 18(16Q24.2) MUTATED DEL PEAK 18(16Q24.2) WILD-TYPE
  CLUS_1                            2                             54
  CLUS_2                            3                             39
  CLUS_3                            0                             59
  CLUS_4                            0                             57
  CLUS_5                            3                             26
  CLUS_6                            4                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(16Q24.2) MUTATED        3      2      5
  DEL PEAK 18(16Q24.2) WILD-TYPE     72     80     51
D25V3, multiclass
        clus
vv       DEL PEAK 18(16Q24.2) MUTATED DEL PEAK 18(16Q24.2) WILD-TYPE
  CLUS_1                            3                             72
  CLUS_2                            2                             80
  CLUS_3                            5                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(16Q24.2) MUTATED        1      1      7      1
  DEL PEAK 18(16Q24.2) WILD-TYPE     38     65     58     42
D25V4, multiclass
        clus
vv       DEL PEAK 18(16Q24.2) MUTATED DEL PEAK 18(16Q24.2) WILD-TYPE
  CLUS_1                            1                             38
  CLUS_2                            1                             65
  CLUS_3                            7                             58
  CLUS_4                            1                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(16Q24.2) MUTATED        0      0      4      1      7
  DEL PEAK 18(16Q24.2) WILD-TYPE     32     90     66     31     57
D25V5, multiclass
        clus
vv       DEL PEAK 18(16Q24.2) MUTATED DEL PEAK 18(16Q24.2) WILD-TYPE
  CLUS_1                            0                             32
  CLUS_2                            0                             90
  CLUS_3                            4                             66
  CLUS_4                            1                             31
  CLUS_5                            7                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(16Q24.2) MUTATED        8      0      4
  DEL PEAK 18(16Q24.2) WILD-TYPE    110    123     43
D25V6, multiclass
        clus
vv       DEL PEAK 18(16Q24.2) MUTATED DEL PEAK 18(16Q24.2) WILD-TYPE
  CLUS_1                            8                            110
  CLUS_2                            0                            123
  CLUS_3                            4                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(16Q24.2) MUTATED        1      2      1      4      3      1
  DEL PEAK 18(16Q24.2) WILD-TYPE     28     35     65     39     77     32
D25V7, multiclass
        clus
vv       DEL PEAK 18(16Q24.2) MUTATED DEL PEAK 18(16Q24.2) WILD-TYPE
  CLUS_1                            1                             28
  CLUS_2                            2                             35
  CLUS_3                            1                             65
  CLUS_4                            4                             39
  CLUS_5                            3                             77
  CLUS_6                            1                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(16Q24.2) MUTATED        6      1      5
  DEL PEAK 18(16Q24.2) WILD-TYPE    114     79     83
D25V8, multiclass
        clus
vv       DEL PEAK 18(16Q24.2) MUTATED DEL PEAK 18(16Q24.2) WILD-TYPE
  CLUS_1                            6                            114
  CLUS_2                            1                             79
  CLUS_3                            5                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(16Q24.2) MUTATED        6      0      5
  DEL PEAK 18(16Q24.2) WILD-TYPE     65     75     71
D25V9, multiclass
        clus
vv       DEL PEAK 18(16Q24.2) MUTATED DEL PEAK 18(16Q24.2) WILD-TYPE
  CLUS_1                            6                             65
  CLUS_2                            0                             75
  CLUS_3                            5                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(16Q24.2) MUTATED        3      8      0
  DEL PEAK 18(16Q24.2) WILD-TYPE     89     91     31
D25V10, multiclass
        clus
vv       DEL PEAK 18(16Q24.2) MUTATED DEL PEAK 18(16Q24.2) WILD-TYPE
  CLUS_1                            3                             89
  CLUS_2                            8                             91
  CLUS_3                            0                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 19(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(19P13.3) MUTATED        3      1      4     15
  DEL PEAK 19(19P13.3) WILD-TYPE    103     72     45     45
D26V1, multiclass
        clus
vv       DEL PEAK 19(19P13.3) MUTATED DEL PEAK 19(19P13.3) WILD-TYPE
  CLUS_1                            3                            103
  CLUS_2                            1                             72
  CLUS_3                            4                             45
  CLUS_4                           15                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(19P13.3) MUTATED        3      3      2      3      9      2
  DEL PEAK 19(19P13.3) WILD-TYPE     53     39     57     54     20     27
D26V2, multiclass
        clus
vv       DEL PEAK 19(19P13.3) MUTATED DEL PEAK 19(19P13.3) WILD-TYPE
  CLUS_1                            3                             53
  CLUS_2                            3                             39
  CLUS_3                            2                             57
  CLUS_4                            3                             54
  CLUS_5                            9                             20
  CLUS_6                            2                             27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(19P13.3) MUTATED        6      6      3
  DEL PEAK 19(19P13.3) WILD-TYPE     69     76     53
D26V3, multiclass
        clus
vv       DEL PEAK 19(19P13.3) MUTATED DEL PEAK 19(19P13.3) WILD-TYPE
  CLUS_1                            6                             69
  CLUS_2                            6                             76
  CLUS_3                            3                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(19P13.3) MUTATED        3      4      6      2
  DEL PEAK 19(19P13.3) WILD-TYPE     36     62     59     41
D26V4, multiclass
        clus
vv       DEL PEAK 19(19P13.3) MUTATED DEL PEAK 19(19P13.3) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            4                             62
  CLUS_3                            6                             59
  CLUS_4                            2                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(19P13.3) MUTATED        0      2      9      2     10
  DEL PEAK 19(19P13.3) WILD-TYPE     32     88     61     30     54
D26V5, multiclass
        clus
vv       DEL PEAK 19(19P13.3) MUTATED DEL PEAK 19(19P13.3) WILD-TYPE
  CLUS_1                            0                             32
  CLUS_2                            2                             88
  CLUS_3                            9                             61
  CLUS_4                            2                             30
  CLUS_5                           10                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(19P13.3) MUTATED       17      4      2
  DEL PEAK 19(19P13.3) WILD-TYPE    101    119     45
D26V6, multiclass
        clus
vv       DEL PEAK 19(19P13.3) MUTATED DEL PEAK 19(19P13.3) WILD-TYPE
  CLUS_1                           17                            101
  CLUS_2                            4                            119
  CLUS_3                            2                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(19P13.3) MUTATED        1      5      1      4      9      3
  DEL PEAK 19(19P13.3) WILD-TYPE     28     32     65     39     71     30
D26V7, multiclass
        clus
vv       DEL PEAK 19(19P13.3) MUTATED DEL PEAK 19(19P13.3) WILD-TYPE
  CLUS_1                            1                             28
  CLUS_2                            5                             32
  CLUS_3                            1                             65
  CLUS_4                            4                             39
  CLUS_5                            9                             71
  CLUS_6                            3                             30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(19P13.3) MUTATED       13      3      7
  DEL PEAK 19(19P13.3) WILD-TYPE    107     77     81
D26V8, multiclass
        clus
vv       DEL PEAK 19(19P13.3) MUTATED DEL PEAK 19(19P13.3) WILD-TYPE
  CLUS_1                           13                            107
  CLUS_2                            3                             77
  CLUS_3                            7                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(19P13.3) MUTATED        4      5     11
  DEL PEAK 19(19P13.3) WILD-TYPE     67     70     65
D26V9, multiclass
        clus
vv       DEL PEAK 19(19P13.3) MUTATED DEL PEAK 19(19P13.3) WILD-TYPE
  CLUS_1                            4                             67
  CLUS_2                            5                             70
  CLUS_3                           11                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(19P13.3) MUTATED        8     12      0
  DEL PEAK 19(19P13.3) WILD-TYPE     84     87     31
D26V10, multiclass
        clus
vv       DEL PEAK 19(19P13.3) MUTATED DEL PEAK 19(19P13.3) WILD-TYPE
  CLUS_1                            8                             84
  CLUS_2                           12                             87
  CLUS_3                            0                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 20(19Q13.42) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(19Q13.42) MUTATED        2      0      5     12
  DEL PEAK 20(19Q13.42) WILD-TYPE    104     73     44     48
D27V1, multiclass
        clus
vv       DEL PEAK 20(19Q13.42) MUTATED DEL PEAK 20(19Q13.42) WILD-TYPE
  CLUS_1                             2                             104
  CLUS_2                             0                              73
  CLUS_3                             5                              44
  CLUS_4                            12                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(19Q13.42) MUTATED        3      3      0      3      8      2
  DEL PEAK 20(19Q13.42) WILD-TYPE     53     39     59     54     21     27
D27V2, multiclass
        clus
vv       DEL PEAK 20(19Q13.42) MUTATED DEL PEAK 20(19Q13.42) WILD-TYPE
  CLUS_1                             3                              53
  CLUS_2                             3                              39
  CLUS_3                             0                              59
  CLUS_4                             3                              54
  CLUS_5                             8                              21
  CLUS_6                             2                              27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(19Q13.42) MUTATED        5      5      5
  DEL PEAK 20(19Q13.42) WILD-TYPE     70     77     51
D27V3, multiclass
        clus
vv       DEL PEAK 20(19Q13.42) MUTATED DEL PEAK 20(19Q13.42) WILD-TYPE
  CLUS_1                             5                              70
  CLUS_2                             5                              77
  CLUS_3                             5                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(19Q13.42) MUTATED        3      2      6      4
  DEL PEAK 20(19Q13.42) WILD-TYPE     36     64     59     39
D27V4, multiclass
        clus
vv       DEL PEAK 20(19Q13.42) MUTATED DEL PEAK 20(19Q13.42) WILD-TYPE
  CLUS_1                             3                              36
  CLUS_2                             2                              64
  CLUS_3                             6                              59
  CLUS_4                             4                              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(19Q13.42) MUTATED        0      0      5      2     12
  DEL PEAK 20(19Q13.42) WILD-TYPE     32     90     65     30     52
D27V5, multiclass
        clus
vv       DEL PEAK 20(19Q13.42) MUTATED DEL PEAK 20(19Q13.42) WILD-TYPE
  CLUS_1                             0                              32
  CLUS_2                             0                              90
  CLUS_3                             5                              65
  CLUS_4                             2                              30
  CLUS_5                            12                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(19Q13.42) MUTATED       14      2      3
  DEL PEAK 20(19Q13.42) WILD-TYPE    104    121     44
D27V6, multiclass
        clus
vv       DEL PEAK 20(19Q13.42) MUTATED DEL PEAK 20(19Q13.42) WILD-TYPE
  CLUS_1                            14                             104
  CLUS_2                             2                             121
  CLUS_3                             3                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(19Q13.42) MUTATED        0      6      1      5      7      0
  DEL PEAK 20(19Q13.42) WILD-TYPE     29     31     65     38     73     33
D27V7, multiclass
        clus
vv       DEL PEAK 20(19Q13.42) MUTATED DEL PEAK 20(19Q13.42) WILD-TYPE
  CLUS_1                             0                              29
  CLUS_2                             6                              31
  CLUS_3                             1                              65
  CLUS_4                             5                              38
  CLUS_5                             7                              73
  CLUS_6                             0                              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(19Q13.42) MUTATED        9      3      7
  DEL PEAK 20(19Q13.42) WILD-TYPE    111     77     81
D27V8, multiclass
        clus
vv       DEL PEAK 20(19Q13.42) MUTATED DEL PEAK 20(19Q13.42) WILD-TYPE
  CLUS_1                             9                             111
  CLUS_2                             3                              77
  CLUS_3                             7                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(19Q13.42) MUTATED        6      4      7
  DEL PEAK 20(19Q13.42) WILD-TYPE     65     71     69
D27V9, multiclass
        clus
vv       DEL PEAK 20(19Q13.42) MUTATED DEL PEAK 20(19Q13.42) WILD-TYPE
  CLUS_1                             6                              65
  CLUS_2                             4                              71
  CLUS_3                             7                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(19Q13.42) MUTATED        9      8      0
  DEL PEAK 20(19Q13.42) WILD-TYPE     83     91     31
D27V10, multiclass
        clus
vv       DEL PEAK 20(19Q13.42) MUTATED DEL PEAK 20(19Q13.42) WILD-TYPE
  CLUS_1                             9                              83
  CLUS_2                             8                              91
  CLUS_3                             0                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 21(22Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q12.2) MUTATED       24      6     13     20
  DEL PEAK 21(22Q12.2) WILD-TYPE     82     67     36     40
D28V1, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           24                             82
  CLUS_2                            6                             67
  CLUS_3                           13                             36
  CLUS_4                           20                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(22Q12.2) MUTATED        9      8      1      6     22     14
  DEL PEAK 21(22Q12.2) WILD-TYPE     47     34     58     51      7     15
D28V2, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                            9                             47
  CLUS_2                            8                             34
  CLUS_3                            1                             58
  CLUS_4                            6                             51
  CLUS_5                           22                              7
  CLUS_6                           14                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q12.2) MUTATED       16     18     17
  DEL PEAK 21(22Q12.2) WILD-TYPE     59     64     39
D28V3, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           16                             59
  CLUS_2                           18                             64
  CLUS_3                           17                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q12.2) MUTATED        4     12     25     10
  DEL PEAK 21(22Q12.2) WILD-TYPE     35     54     40     33
D28V4, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                           12                             54
  CLUS_3                           25                             40
  CLUS_4                           10                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(22Q12.2) MUTATED        2      5     16      7     33
  DEL PEAK 21(22Q12.2) WILD-TYPE     30     85     54     25     31
D28V5, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                            2                             30
  CLUS_2                            5                             85
  CLUS_3                           16                             54
  CLUS_4                            7                             25
  CLUS_5                           33                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q12.2) MUTATED       36      9     18
  DEL PEAK 21(22Q12.2) WILD-TYPE     82    114     29
D28V6, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           36                             82
  CLUS_2                            9                            114
  CLUS_3                           18                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(22Q12.2) MUTATED        3     14      8     20     14      4
  DEL PEAK 21(22Q12.2) WILD-TYPE     26     23     58     23     66     29
D28V7, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                            3                             26
  CLUS_2                           14                             23
  CLUS_3                            8                             58
  CLUS_4                           20                             23
  CLUS_5                           14                             66
  CLUS_6                            4                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q12.2) MUTATED       28     15     20
  DEL PEAK 21(22Q12.2) WILD-TYPE     92     65     68
D28V8, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           28                             92
  CLUS_2                           15                             65
  CLUS_3                           20                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q12.2) MUTATED       17     11     22
  DEL PEAK 21(22Q12.2) WILD-TYPE     54     64     54
D28V9, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           17                             54
  CLUS_2                           11                             64
  CLUS_3                           22                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q12.2) MUTATED       21     28      1
  DEL PEAK 21(22Q12.2) WILD-TYPE     71     71     30
D28V10, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           21                             71
  CLUS_2                           28                             71
  CLUS_3                            1                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
