gene1	gene2	pval	qval
1p-Del	Del_5p15.33	0.000113	1
EGFR	19q-Del	0.000118	1
CIC	7q-Amp	0.000124	1
7p-Amp	Del_19q13.42	0.000125	1
Amp_7p11.2	Del_1p36.32	0.000125	1
Del_1p32.3	Del_22q13.31	0.000139	1
CIC	Amp_7p11.2	0.000152	1
6q-Del	Del_1p36.32	0.000174	1
Amp_12p13.32	Del_1p36.32	0.000174	1
PIK3CA	TP53	0.000187	1
6q-Del	Del_1p32.3	0.000189	1
ATRX	Amp_7p11.2	0.000191	1
1p-Del	9p-Del	0.000211	1
19q-Del	Del_2q37.3	0.000252	1
Del_11p15.5	Del_19q13.42	0.000256	1
FUBP1	Amp_7q32.3	0.000269	1
10p-Amp	19q-Del	0.000277	1
TP53	19p-Amp	0.000278	1
CIC	6q-Del	0.000307	1
CIC	Del_2q37.3	0.000322	1
19q-Del	Del_9p23	0.000372	1
19q-Del	22q-Del	0.000404	1
BRAF	IDH1	0.000506	1
10q-Del	Del_1p36.32	0.000524	1
1p-Del	Del_3q29	0.000535	1
Del_1p36.32	Del_9p23	0.000582	1
9p-Del	Del_1p32.3	0.000607	1
FUBP1	Amp_7q31.2	0.000636	1
7p-Amp	1p-Del	0.00064	1
Amp_12q14.1	Del_1p36.32	0.000664	1
Del_1p36.32	Del_5p15.33	0.000664	1
NF1	TP53	0.000709	1
Amp_1q32.1	Del_19q13.42	0.000779	1
Amp_10p15.3	Del_19q13.42	0.000786	1
7p-Amp	19q-Del	0.000841	1
PTEN	19q-Del	0.000856	1
19q-Del	Amp_12q14.1	0.000856	1
19q-Del	Del_5p15.33	0.000856	1
PTEN	TP53	0.000863	1
PTEN	Del_19q13.42	0.00107	1
Amp_12q14.1	Del_19q13.42	0.00107	1
FUBP1	Del_11p15.5	0.00124	1
10p-Del	Del_1p36.32	0.00126	1
Del_3q29	Del_19q13.42	0.00127	1
EGFR	1p-Del	0.00135	1
CIC	10p-Amp	0.0014	1
PTEN	1p-Del	0.00141	1
1p-Del	Amp_12q14.1	0.00141	1
Del_1p36.32	Del_8q24.3	0.00142	1
IDH2	TP53	0.00146	1
NOTCH1	TP53	0.00152	1
CIC	22q-Del	0.0018	1
Del_19q13.42	Del_22q13.31	0.00182	1
10q-Del	Del_1p32.3	0.00184	1
TP53	Amp_7p11.2	0.00192	1
1p-Del	Amp_7q32.3	0.00201	1
CIC	EGFR	0.00206	1
Amp_4q12	Del_19q13.42	0.00207	1
FUBP1	Del_9p21.3	0.00211	1
CIC	Del_9p23	0.00216	1
Amp_8q24.13	Del_19q13.42	0.00224	1
19q-Del	9p-Del	0.00243	1
IDH1	RB1	0.00249	1
1p-Del	Del_8q24.3	0.00249	1
ATRX	14q-Del	0.00256	1
ATRX	Amp_1q32.1	0.00259	1
ATRX	19p-Amp	0.00265	1
Del_1p36.32	Del_22q13.31	0.00266	1
FUBP1	7q-Amp	0.0027	1
CIC	Del_5p15.33	0.00296	1
FUBP1	10q-Del	0.00298	1
FUBP1	Amp_7p11.2	0.00299	1
Del_1p36.32	Del_3q29	0.00303	1
Del_1p32.3	Del_3q29	0.00319	1
CIC	Amp_12p13.32	0.00324	1
19q-Del	Amp_7q32.3	0.00325	1
12q-Del	Del_1p36.32	0.00326	1
Del_1p36.32	Del_3q13.31	0.00326	1
12q-Del	Del_1p32.3	0.0034	1
7q-Amp	1p-Del	0.0035	1
19q-Del	Del_3q29	0.00372	1
CIC	Del_6p25.3	0.0038	1
12q-Del	19q-Del	0.00385	1
ATRX	18p-Del	0.00403	1
ZBTB20	Del_9p21.3	0.00406	1
10p-Del	Del_1p32.3	0.00408	1
FUBP1	10p-Del	0.00412	1
9p-Del	Del_1p36.32	0.00415	1
CIC	7p-Amp	0.00418	1
TP53	15q-Del	0.00421	1
NIPBL	TP53	0.0043	1
ATRX	PTEN	0.0044	1
Del_1p36.32	Del_5q34	0.0044	1
Del_1p32.3	Del_5q34	0.00462	1
8q-Amp	Del_1p32.3	0.00464	1
1p-Del	Amp_7q31.2	0.00482	1
PIK3CA	Amp_8q24.13	0.00486	1
Del_1p36.32	Del_Xq21.1	0.00494	1
Amp_Xp11.22	Del_1p32.3	0.00514	1
Del_1p32.3	Del_Xq21.1	0.00514	1
TP53	18q-Del	0.00532	1
12q-Del	1p-Del	0.00533	1
1p-Del	Del_3q13.31	0.00533	1
19q-Del	Amp_4q12	0.00534	1
NOTCH1	10q-Del	0.00569	1
CIC	9p-Del	0.00645	1
IDH1	Amp_3q26.33	0.00661	1
Amp_7p11.2	Del_1p32.3	0.00673	1
FUBP1	Del_6q26	0.00704	1
IDH1	PTPN11	0.00717	1
TP53	Amp_1q32.1	0.00727	1
NOTCH1	Del_10q26.3	0.0074	1
7q-Amp	19q-Del	0.00746	1
NOTCH1	10p-Del	0.00759	1
1p-Del	Amp_4q12	0.00779	1
1p-Del	Amp_Xp11.22	0.00779	1
1p-Del	Del_5q34	0.00779	1
1p-Del	Del_Xq21.1	0.00779	1
11p-Del	Del_19q13.42	0.0078	1
FUBP1	Del_11p15.1	0.00783	1
Del_1p32.3	Del_12q12	0.00784	1
CIC	Del_3q29	0.00799	1
19q-Del	Amp_7q31.2	0.00812	1
10q-Del	Amp_8q24.13	0.00815	1
ATRX	NF1	0.00837	1
8q-Amp	1p-Del	0.00843	1
Del_8q24.3	Del_19q13.42	0.00869	1
FUBP1	Del_6q22.31	0.00871	1
Amp_1q32.1	Del_1p36.32	0.00917	1
19q-Del	Del_12q12	0.00928	1
ATRX	NIPBL	0.0101	1
CIC	Del_5q34	0.0102	1
ATRX	Del_18q23	0.0104	1
7p-Amp	Del_1p36.32	0.0106	1
22q-Del	Del_1p32.3	0.0107	1
19q-Del	Amp_1q32.1	0.0109	1
Amp_13q34	Del_1p36.32	0.0113	1
10p-Del	Amp_8q24.13	0.0114	1
1p-Del	Amp_3q26.33	0.0114	1
1p-Del	Del_6p25.3	0.0114	1
7p-Amp	Del_1p32.3	0.0116	1
ZBTB20	Del_10q26.3	0.0117	1
Amp_13q34	Del_1p32.3	0.0117	1
Del_11p15.1	Del_19q13.42	0.0118	1
ATRX	Del_10q26.3	0.0122	1
19q-Del	Amp_13q34	0.0129	1
FUBP1	Del_2q37.3	0.0133	1
IDH1	Del_9p23	0.0143	1
1p-Del	Del_12q12	0.0143	1
IDH2	Del_10q26.3	0.0145	1
EGFR	Amp_8q24.13	0.0151	1
1p-Del	Amp_1q32.1	0.0151	1
TP53	ZBTB20	0.0152	1
7q-Amp	Del_19q13.42	0.0152	1
19q-Del	Del_8q24.3	0.0154	1
FUBP1	7p-Amp	0.0155	1
Amp_7q32.3	Del_1p36.32	0.0158	1
Amp_19p13.3	Del_14q24.3	0.0163	1
1p-Del	Amp_13q34	0.0166	1
CIC	Amp_1q32.1	0.0167	1
ATRX	Amp_12q14.1	0.0168	1
Amp_7p11.2	Del_11p15.5	0.0168	1
10p-Amp	Del_19q13.42	0.017	1
Amp_7q32.3	Del_1p32.3	0.0176	1
PIK3CA	Del_2q37.3	0.0178	1
10q-Del	Amp_12p13.32	0.0179	1
ARID1A	Del_10q26.3	0.018	1
FAM47C	Del_10q26.3	0.018	1
ANKRD36	Del_19q13.42	0.0183	1
8q-Amp	Del_1p36.32	0.0187	1
PTEN	Del_1p32.3	0.0196	1
Amp_12q14.1	Del_1p32.3	0.0196	1
Del_1p32.3	Del_3p21.31	0.0196	1
ATRX	IDH2	0.0197	1
FUBP1	Del_22q13.31	0.0202	1
10p-Del	Del_11p15.5	0.0206	1
CIC	Del_8q24.3	0.0214	1
12q-Del	Del_19q13.42	0.0217	1
FUBP1	11p-Del	0.0224	1
FUBP1	Amp_10p15.3	0.0224	1
10p-Del	Amp_12p13.32	0.0224	1
8q-Amp	19q-Del	0.0225	1
Amp_4q12	Del_1p36.32	0.023	1
CIC	8q-Amp	0.0231	1
CIC	Amp_12q14.1	0.0231	1
IDH1	PLCG1	0.024	1
STK19	1p-Del	0.0242	1
FUBP1	Amp_8q24.13	0.0246	1
EGFR	Del_1p36.32	0.0248	1
Del_1p36.32	Del_12q12	0.0258	1
EGFR	Del_1p32.3	0.0262	1
18q-Del	Del_11p15.5	0.0268	1
19q-Del	Del_5q34	0.0271	1
Del_1p32.3	Del_3q13.31	0.0277	1
ATRX	4q-Del	0.0293	1
10q-Del	4q-Del	0.0296	1
IDH1	9p-Del	0.0297	1
19q-Del	Del_6p25.3	0.03	1
PIK3R1	TP53	0.0301	1
19q-Del	Del_3q13.31	0.0306	1
IDH1	Amp_19p13.3	0.0311	1
NOTCH1	Del_22q13.31	0.0312	1
Amp_7q32.3	Del_19q13.42	0.0322	1
1p-Del	Del_3p21.31	0.0325	1
Amp_12p13.32	Del_6q26	0.0325	1
MYT1	Del_19q13.42	0.0326	1
TRERF1	Del_19q13.42	0.0326	1
11q-Amp	Del_10q26.3	0.0344	1
CIC	12q-Del	0.0348	1
CIC	Del_3q13.31	0.0348	1
FUBP1	Del_13q14.2	0.0353	1
Amp_7q31.2	Del_1p36.32	0.0355	1
10p-Del	4q-Del	0.0361	1
FUBP1	6q-Del	0.0376	1
FUBP1	Amp_12p13.32	0.0376	1
IDH2	Del_14q24.3	0.0379	1
Amp_Xp11.22	Del_1p36.32	0.0379	1
Xp-Del	Del_1p36.32	0.0389	1
ATRX	Del_14q24.3	0.039	1
Amp_7q31.2	Del_1p32.3	0.039	1
NF1	Del_19q13.42	0.0392	1
7q-Amp	Del_5q34	0.0392	1
Amp_12p13.32	Del_19q13.42	0.0392	1
Xp-Del	Del_1p32.3	0.0398	1
IDH1	6q-Del	0.0405	1
14q-Del	Amp_10p15.3	0.0405	1
Amp_7p11.2	Del_5q34	0.041	1
7q-Amp	Del_1p32.3	0.0426	1
19q-Del	Amp_Xp11.22	0.0429	1
19q-Del	Del_Xq21.1	0.0429	1
ATRX	7p-Amp	0.0433	1
CIC	Amp_Xp11.22	0.0444	1
CIC	Del_Xq21.1	0.0444	1
12q-Del	Amp_7q32.3	0.0444	1
FAM47C	Del_14q24.3	0.0448	1
ATRX	ZBTB20	0.0452	1
10p-Amp	10p-Del	0.0457	1
18q-Del	Amp_8q24.13	0.0457	1
TP53	14q-Del	0.0467	1
IDH1	Del_6p25.3	0.0468	1
PIK3CA	Amp_12p13.32	0.0469	1
ZBTB20	Del_13q14.2	0.0473	1
EGFR	Del_11p15.5	0.0475	1
8q-Amp	Del_19q13.42	0.048	1
IDH1	PRX	0.0481	1
IDH1	SETD2	0.0481	1
IDH1	STK19	0.0481	1
Del_9p23	Del_19q13.42	0.0486	1
IDH1	Del_14q24.3	0.0497	1
4q-Del	Del_6q26	0.0499	1
TP53	18p-Del	0.0503	1
IRS4	1p-Del	0.0513	1
1p-Del	Xp-Del	0.0513	1
CIC	Del_12q12	0.0515	1
IDH1	Del_6q26	0.0518	1
19p-Amp	Del_19q13.42	0.0519	1
NIPBL	Del_14q24.3	0.0529	1
Amp_3q26.33	Del_1p36.32	0.0534	1
ATRX	CUL4B	0.0538	1
NOTCH1	Amp_12p13.32	0.0542	1
FUBP1	13q-Del	0.0545	1
ZBTB20	9p-Del	0.0547	1
19p-Amp	Del_1p32.3	0.055	1
CIC	19p-Amp	0.0566	1
CIC	Amp_3q26.33	0.0566	1
ATRX	NOTCH1	0.0572	1
DNMT3A	Del_9p21.3	0.0578	1
BRAF	Del_19q13.42	0.0579	1
PTEN	Amp_8q24.13	0.0583	1
12q-Del	Amp_7q31.2	0.0584	1
ANKRD36	Del_1p36.32	0.0585	1
Amp_2p24.3	Del_1p36.32	0.0585	1
NIPBL	Del_9p21.3	0.0589	1
ANKRD36	Del_1p32.3	0.0597	1
19p-Amp	19q-Del	0.0597	1
19q-Del	Amp_3q26.33	0.0597	1
1p-Del	Del_13q14.2	0.0597	1
Amp_2p24.3	Del_1p32.3	0.0597	1
NF1	Del_11p15.5	0.0602	1
Del_1p32.3	Del_8q24.3	0.0603	1
EGFR	Amp_10p15.3	0.0614	1
TP53	Amp_19p13.3	0.0619	1
IDH2	Del_11p15.5	0.063	1
ANKRD36	19q-Del	0.0635	1
19q-Del	Amp_2p24.3	0.0635	1
CIC	Amp_4q12	0.0645	1
Del_6p25.3	Del_19q13.42	0.0662	1
TP53	9q-Del	0.0668	1
SRPX	TP53	0.0673	1
ATRX	Del_Xq21.1	0.068	1
7q-Amp	Del_1p36.32	0.0681	1
CREBZF	TP53	0.0685	1
RBPJ	TP53	0.0685	1
ATRX	22q-Del	0.0688	1
FUBP1	10p-Amp	0.0695	1
10q-Del	4p-Del	0.0707	1
Amp_7q32.3	Del_12q12	0.0717	1
CIC	Amp_13q34	0.0721	1
CIC	Del_7p22.3	0.0721	1
10p-Del	Amp_10p15.3	0.0722	1
6q-Del	Amp_10p15.3	0.0724	1
ARID1A	9p-Del	0.0725	1
ARID2	IDH1	0.0728	1
NIPBL	Del_13q14.2	0.0738	1
Del_1p36.32	Del_6p25.3	0.0739	1
19p-Amp	1p-Del	0.0741	1
PIK3R1	Amp_8q24.13	0.0743	1
IRS4	Del_19q13.42	0.0745	1
ANKRD36	1p-Del	0.0746	1
1p-Del	Amp_2p24.3	0.0746	1
Amp_8q24.13	Del_6q26	0.0752	1
Del_1p32.3	Del_6p25.3	0.0767	1
FUBP1	22q-Del	0.077	1
18p-Del	Del_10q26.3	0.0773	1
Del_3q13.31	Del_19q13.42	0.0779	1
ZNF292	Del_9p23	0.079	1
Amp_4q12	Del_1p32.3	0.0799	1
ZBTB20	10q-Del	0.08	1
10p-Del	4p-Del	0.082	1
Amp_7q32.3	Del_5q34	0.0838	1
8q-Amp	Del_6q26	0.0847	1
ATRX	Xq-Del	0.0862	1
7p-Amp	Del_5q34	0.0862	1
7p-Amp	Del_11p15.5	0.0863	1
FUBP1	Del_9p23	0.0869	1
ATRX	4p-Del	0.0875	1
CIC	PTEN	0.0876	1
CIC	Del_3p21.31	0.0876	1
22q-Del	Del_1p36.32	0.0877	1
MYT1	Del_1p36.32	0.088	1
TRERF1	Del_1p36.32	0.088	1
MYT1	Del_1p32.3	0.0896	1
TRERF1	Del_1p32.3	0.0896	1
EGFR	Amp_12p13.32	0.0897	1
ATRX	Amp_19p13.3	0.0898	1
IDH2	10q-Del	0.0904	1
NOTCH1	Amp_7p11.2	0.0909	1
Amp_7q31.2	Del_19q13.42	0.0914	1
ZBTB20	10p-Del	0.0921	1
7q-Amp	12q-Del	0.0931	1
7q-Amp	Del_3q13.31	0.0931	1
FUBP1	8q-Amp	0.0942	1
FUBP1	Amp_12q14.1	0.0942	1
FUBP1	Del_5p15.33	0.0942	1
8q-Amp	Del_6q22.31	0.0942	1
MYT1	19q-Del	0.0944	1
TRERF1	19q-Del	0.0944	1
10p-Del	Del_11p15.1	0.0956	1
Amp_7p11.2	Amp_12p13.32	0.0958	1
12q-Del	Amp_7p11.2	0.0962	1
Amp_7p11.2	Del_3q13.31	0.0962	1
SLC6A3	Del_9p21.3	0.0975	1
ZMIZ1	Del_9p21.3	0.0975	1
NUDT11	Del_10q26.3	0.0998	1
TP53	ZNF292	0.1	1
Del_12q12	Del_19q13.42	0.101	1
ARID1A	10q-Del	0.102	1
FAM47C	10q-Del	0.102	1
NOTCH1	22q-Del	0.102	1
IDH2	10p-Del	0.103	1
NF1	Amp_8q24.13	0.103	1
Amp_7q31.2	Del_12q12	0.103	1
FUBP1	Del_6p25.3	0.104	1
TNRC18	Del_1p36.32	0.104	1
10q-Del	Del_4q34.3	0.104	1
19q-Del	Del_13q14.2	0.104	1
6q-Del	Amp_12p13.32	0.104	1
Del_11p15.5	Del_18q23	0.104	1
SMARCA4	Del_10q26.3	0.105	1
8q-Amp	Del_14q24.3	0.105	1
Del_6q26	Del_11p15.5	0.105	1
ATRX	15q-Del	0.106	1
STK19	Del_1p32.3	0.106	1
TNRC18	Del_1p32.3	0.106	1
ARID1A	Amp_8q24.13	0.107	1
FAM47C	Amp_8q24.13	0.107	1
9p-Del	Del_19q13.42	0.107	1
MYT1	1p-Del	0.108	1
TRERF1	1p-Del	0.108	1
11p-Del	Amp_11q24.1	0.109	1
PIK3CA	8q-Amp	0.11	1
Del_5p15.33	Del_19q13.42	0.11	1
7q-Amp	Del_Xq21.1	0.111	1
TCF12	Del_9p21.3	0.112	1
Amp_7q31.2	Del_5q34	0.112	1
Del_12q12	Del_18q23	0.112	1
STK19	19q-Del	0.114	1
ZBTB20	Del_9p23	0.114	1
Amp_7p11.2	Amp_Xp11.22	0.114	1
Amp_7p11.2	Del_11p15.1	0.114	1
Amp_7p11.2	Del_Xq21.1	0.114	1
FUBP1	4p-Del	0.115	1
ARID1A	10p-Del	0.116	1
FAM47C	10p-Del	0.116	1
10p-Del	Del_5q34	0.116	1
SMARCA4	Del_13q14.2	0.117	1
PDGFRA	Del_19q13.42	0.118	1
PLCG1	TP53	0.118	1
PTPN11	Del_19q13.42	0.118	1
RB1	TP53	0.118	1
SETD2	Del_19q13.42	0.118	1
STK19	Del_19q13.42	0.118	1
TNRC18	Del_19q13.42	0.118	1
10q-Del	Del_2q37.3	0.118	1
Amp_1q22	Del_19q13.42	0.118	1
NIPBL	Amp_8q24.13	0.12	1
PIK3CA	14q-Del	0.121	1
PIK3CA	Del_6p25.3	0.121	1
10q-Del	Del_11p15.5	0.121	1
NOTCH1	Del_9p21.3	0.122	1
NOTCH1	8q-Amp	0.123	1
NOTCH1	Amp_12q14.1	0.123	1
NOTCH1	Del_5p15.33	0.123	1
ATRX	13q-Del	0.125	1
FUBP1	9p-Del	0.125	1
14q-Del	Amp_19p13.3	0.125	1
C4BPA	IDH1	0.127	1
DLC1	IDH1	0.127	1
G6PC	IDH1	0.127	1
IDH1	NEU2	0.127	1
ZBTB20	13q-Del	0.127	1
Amp_7q31.2	Del_11p15.5	0.127	1
11p-Del	18q-Del	0.128	1
18q-Del	Amp_10p15.3	0.128	1
IDH2	Del_6q26	0.129	1
Amp_8q24.13	Del_14q24.3	0.13	1
EGFR	Amp_11q24.1	0.131	1
IDH1	Del_6q22.31	0.131	1
SMARCA4	Del_19q13.42	0.131	1
10p-Del	Del_4q34.3	0.131	1
BRAF	Del_1p36.32	0.132	1
IDH2	Del_9p21.3	0.132	1
Xq-Del	Del_1p36.32	0.132	1
7q-Amp	Del_14q24.3	0.133	1
Amp_1q32.1	Del_1p32.3	0.133	1
BRAF	Del_1p32.3	0.134	1
Xq-Del	Del_1p32.3	0.134	1
IDH2	Del_11p15.1	0.135	1
TNRC18	1p-Del	0.135	1
ATRX	Del_7p22.3	0.136	1
8q-Amp	14q-Del	0.136	1
Amp_1q32.1	Amp_8q24.13	0.136	1
DNMT3A	Del_9p23	0.137	1
NOTCH1	Amp_8q24.13	0.137	1
PTEN	Del_1p36.32	0.137	1
4q-Del	6q-Del	0.137	1
CIC	NF1	0.138	1
EGFR	Del_11p15.1	0.139	1
BRAF	19q-Del	0.14	1
11p-Del	Amp_7p11.2	0.14	1
ATRX	NRAS	0.141	1
EGFR	10p-Amp	0.141	1
EGFR	Del_12q12	0.141	1
FUBP1	Del_3q29	0.141	1
IDH2	Del_6q22.31	0.141	1
FAM47C	Del_6q26	0.143	1
19p-Amp	Del_14q24.3	0.143	1
Amp_4q12	Del_6q26	0.143	1
Del_5q34	Del_6q26	0.143	1
ZBTB20	Amp_7p11.2	0.144	1
10p-Del	Del_2q37.3	0.144	1
Amp_7q31.2	Del_14q24.3	0.144	1
ZNF292	9p-Del	0.146	1
ZNF292	Del_11p15.5	0.146	1
NF1	Amp_11q24.1	0.147	1
11q-Amp	10q-Del	0.147	1
ARID1A	Del_11p15.1	0.149	1
CIC	GAGE2A	0.149	1
CIC	Xp-Del	0.149	1
IDH1	PIK3CA	0.151	1
SLC6A3	Del_10q26.3	0.152	1
TP53	4q-Del	0.152	1
ZMIZ1	Del_10q26.3	0.152	1
ARID1A	Del_9p23	0.153	1
ZBTB20	Del_2q37.3	0.153	1
4q-Del	Amp_7p11.2	0.153	1
19q-Del	Del_3p21.31	0.155	1
Amp_10p15.3	Del_14q24.3	0.155	1
FUBP1	Amp_4q12	0.156	1
TP53	Del_10q26.3	0.156	1
ARID1A	Del_9p21.3	0.157	1
BRAF	1p-Del	0.157	1
FAM47C	Del_9p21.3	0.157	1
1p-Del	Xq-Del	0.157	1
10p-Amp	6q-Del	0.158	1
10q-Del	18p-Del	0.159	1
10q-Del	Amp_11q24.1	0.159	1
Amp_3q26.33	Del_19q13.42	0.159	1
NOTCH1	Amp_10p15.3	0.16	1
ABCA7	IDH1	0.161	1
C9orf79	IDH1	0.161	1
IDH1	PDGFRA	0.161	1
IDH1	TNRC18	0.161	1
PIK3CA	Del_3q29	0.161	1
Amp_17q25.1	Del_19q13.42	0.161	1
TP53	4p-Del	0.162	1
14q-Del	Amp_8q24.13	0.162	1
NF1	Del_11p15.1	0.163	1
NOTCH1	Del_13q14.2	0.163	1
PIK3CA	9p-Del	0.163	1
SETD2	Del_9p23	0.164	1
11q-Amp	10p-Del	0.164	1
7p-Amp	12q-Del	0.166	1
7p-Amp	Del_3q13.31	0.166	1
18p-Del	Amp_8q24.13	0.166	1
PTEN	Del_11p15.5	0.167	1
ARID2	Del_14q24.3	0.168	1
IDH2	Del_2q37.3	0.168	1
19q-Del	Amp_17q25.1	0.169	1
CIC	Amp_17q25.1	0.17	1
SMARCA4	6q-Del	0.17	1
18q-Del	Amp_12p13.32	0.17	1
Xp-Del	Amp_7q32.3	0.171	1
NIPBL	13q-Del	0.172	1
15q-Del	Amp_8q24.13	0.172	1
10q-Del	Del_12q12	0.174	1
NOTCH1	Amp_17q25.1	0.175	1
NOTCH1	Del_3q29	0.175	1
ATRX	CREBZF	0.176	1
ATRX	RBPJ	0.176	1
EGFR	8q-Amp	0.176	1
NIPBL	Del_9p23	0.176	1
PIK3R1	11p-Del	0.177	1
PIK3R1	Amp_10p15.3	0.177	1
19p-Amp	Del_13q14.2	0.178	1
PIK3CA	Del_9p21.3	0.179	1
NF1	Amp_19p13.3	0.182	1
10p-Del	18p-Del	0.183	1
10p-Del	Amp_11q24.1	0.183	1
DLC1	Del_19q13.42	0.184	1
FAM47C	Del_2q37.3	0.184	1
PLCG1	Del_19q13.42	0.184	1
RB1	Del_19q13.42	0.184	1
ZBTB20	Del_22q13.31	0.184	1
7q-Amp	Del_12q12	0.184	1
6q-Del	Del_11p15.5	0.184	1
EGFR	Del_2q37.3	0.186	1
TP53	22q-Del	0.186	1
Amp_3q26.33	Del_1p32.3	0.186	1
Amp_11q24.1	Del_14q24.3	0.186	1
ATRX	PIK3R1	0.187	1
IDH1	RET	0.187	1
ATRX	SETD2	0.188	1
CUL4B	TP53	0.188	1
IRS4	Del_10q26.3	0.188	1
ZNF292	10q-Del	0.188	1
10q-Del	12q-Del	0.188	1
ANKRD36	CIC	0.189	1
CIC	Amp_2p24.3	0.189	1
7p-Amp	Amp_Xp11.22	0.189	1
7p-Amp	Del_Xq21.1	0.189	1
Del_4q34.3	Del_6q26	0.189	1
FUBP1	Amp_1q32.1	0.19	1
IDH2	14q-Del	0.191	1
NOTCH1	Del_5q34	0.191	1
SMARCA4	10q-Del	0.191	1
10q-Del	18q-Del	0.191	1
NOTCH1	Del_11p15.5	0.192	1
ZBTB20	Amp_10p15.3	0.192	1
Amp_7p11.2	Del_12q12	0.192	1
19p-Amp	Del_11p15.5	0.193	1
11p-Del	Del_18q23	0.193	1
NF1	8q-Amp	0.195	1
NF1	Amp_12q14.1	0.195	1
NF1	Del_3p21.31	0.195	1
PTEN	Amp_12p13.32	0.195	1
TCF12	Del_10q26.3	0.195	1
TP53	Del_18q23	0.195	1
8q-Amp	6q-Del	0.195	1
6q-Del	Amp_12q14.1	0.195	1
IRS4	Del_1p36.32	0.196	1
11q-Amp	Del_6q26	0.196	1
EGFR	NOTCH1	0.197	1
SLC6A3	Del_9p23	0.197	1
ZMIZ1	Del_9p23	0.197	1
IDH2	Del_22q13.31	0.199	1
IRS4	Del_1p32.3	0.199	1
10p-Del	Del_12q12	0.199	1
Xp-Del	Amp_7q31.2	0.199	1
Amp_17q25.1	Del_18q23	0.199	1
Del_3q29	Del_18q23	0.199	1
BRAF	TP53	0.2	1
FAM47C	TP53	0.201	1
NIPBL	Del_2q37.3	0.201	1
Del_1p36.32	Del_13q14.2	0.202	1
NF1	19q-Del	0.203	1
DNMT3A	Del_13q14.2	0.206	1
ZNF292	10p-Del	0.206	1
10p-Del	12q-Del	0.206	1
10p-Amp	Del_14q24.3	0.207	1
FAM47C	14q-Del	0.208	1
IDH2	11p-Del	0.208	1
IDH2	Amp_10p15.3	0.208	1
IRS4	19q-Del	0.209	1
19q-Del	Xp-Del	0.209	1
FUBP1	Del_8q24.3	0.21	1
NOTCH1	Del_6q26	0.21	1
11q-Amp	13q-Del	0.21	1
11q-Amp	Del_6q22.31	0.21	1
Del_5q34	Del_19q13.42	0.21	1
TCF12	Amp_7q31.2	0.211	1
10p-Del	11p-Del	0.211	1
18p-Del	Del_12q12	0.211	1
Amp_11q24.1	Del_12q12	0.211	1
DNMT3A	IDH1	0.212	1
PIK3CA	Amp_1q32.1	0.212	1
10q-Del	Amp_Xp11.22	0.212	1
10q-Del	Del_Xq21.1	0.212	1
Del_1p32.3	Del_13q14.2	0.212	1
C4BPA	Del_9p21.3	0.213	1
CREBZF	Amp_7q32.3	0.213	1
PPL	Del_9p21.3	0.213	1
TRERF1	Del_9p21.3	0.213	1
NF1	Del_2q37.3	0.214	1
DLX6	IDH1	0.215	1
IDH1	SRPX	0.215	1
FAM47C	Del_18q23	0.216	1
FAM47C	Del_22q13.31	0.216	1
Amp_12q14.1	Del_9p23	0.216	1
Del_5q34	Del_18q23	0.216	1
SMARCA4	10p-Del	0.217	1
10p-Del	18q-Del	0.217	1
Amp_8q24.13	Amp_19p13.3	0.218	1
Amp_19p13.3	Del_4q34.3	0.218	1
Amp_1q32.1	Del_2q37.3	0.22	1
7q-Amp	Amp_12p13.32	0.221	1
ARID2	Del_11p15.5	0.222	1
ARID2	Del_19q13.42	0.222	1
DNMT3A	9p-Del	0.222	1
7p-Amp	Amp_12p13.32	0.222	1
Amp_13q34	Del_19q13.42	0.222	1
IDH1	9q-Del	0.223	1
NF1	4p-Del	0.224	1
PIK3R1	Amp_12p13.32	0.224	1
SMARCA4	18p-Del	0.224	1
22q-Del	Amp_11q24.1	0.224	1
ARID1A	11p-Del	0.225	1
FAM47C	Amp_10p15.3	0.225	1
14q-Del	Del_11p15.5	0.225	1
Amp_7q32.3	Del_11p15.5	0.225	1
NIPBL	14q-Del	0.226	1
NOTCH1	Amp_1q32.1	0.228	1
ZNF292	Del_10q26.3	0.228	1
IDH1	Amp_4q12	0.229	1
ZBTB20	Del_11p15.5	0.229	1
8q-Amp	10q-Del	0.23	1
ATRX	C14orf4	0.231	1
ATRX	TMEM216	0.231	1
10p-Del	Amp_Xp11.22	0.231	1
10p-Del	Del_Xq21.1	0.231	1
CREBZF	Del_10q26.3	0.232	1
FUBP1	15q-Del	0.232	1
SLC6A3	Del_14q24.3	0.233	1
14q-Del	Amp_7q31.2	0.233	1
4q-Del	Del_6q22.31	0.233	1
NIPBL	Del_22q13.31	0.235	1
NOTCH1	Del_6q22.31	0.235	1
ARID2	Del_1p36.32	0.236	1
SMARCA4	Del_12q12	0.236	1
10p-Amp	18q-Del	0.236	1
18q-Del	Del_12q12	0.236	1
EGFR	IDH2	0.237	1
EGFR	Del_3q29	0.237	1
NOTCH1	7p-Amp	0.237	1
7q-Amp	13q-Del	0.237	1
7q-Amp	Del_6q22.31	0.237	1
C9orf79	Del_13q14.2	0.238	1
TNRC18	Del_13q14.2	0.238	1
EGFR	Del_4q34.3	0.239	1
Amp_8q24.13	Amp_12q14.1	0.239	1
ARID2	Del_1p32.3	0.24	1
CIC	PLCG1	0.24	1
ZNF292	Del_6q26	0.241	1
PTPN11	TP53	0.243	1
CREBZF	Amp_7q31.2	0.244	1
NIPBL	Amp_10p15.3	0.244	1
Amp_7q31.2	Del_3q13.31	0.245	1
EGFR	11p-Del	0.246	1
19p-Amp	Amp_8q24.13	0.246	1
ATRX	9q-Del	0.248	1
PIK3CA	Del_10q26.3	0.248	1
ZNF292	Del_11p15.1	0.248	1
10p-Amp	Del_6q26	0.248	1
18q-Del	Del_10q26.3	0.249	1
NOTCH1	Del_8q24.3	0.25	1
SMARCA4	22q-Del	0.25	1
14q-Del	Amp_12p13.32	0.25	1
Del_2q37.3	Del_19q13.42	0.25	1
FUBP1	Amp_11q24.1	0.251	1
13q-Del	Amp_11q24.1	0.251	1
8q-Amp	18p-Del	0.252	1
Amp_7q31.2	Amp_12p13.32	0.252	1
ARID2	19q-Del	0.253	1
IDH1	Xp-Del	0.253	1
ATRX	PLCG1	0.254	1
ATRX	RB1	0.254	1
IDH2	9p-Del	0.254	1
EGFR	Del_5q34	0.255	1
SETD2	9p-Del	0.255	1
STK19	Del_11p15.5	0.255	1
TNRC18	Del_11p15.5	0.255	1
Amp_1q32.1	Del_18q23	0.255	1
Amp_1q32.1	Del_22q13.31	0.255	1
Amp_11q24.1	Del_13q14.2	0.255	1
FAM47C	Del_13q14.2	0.256	1
FUBP1	12q-Del	0.256	1
FUBP1	Del_3q13.31	0.256	1
ZNF292	Del_6q22.31	0.256	1
Amp_7q31.2	Del_22q13.31	0.256	1
IDH2	6q-Del	0.258	1
IDH2	Amp_12p13.32	0.258	1
NF1	Del_3q29	0.258	1
8q-Amp	10p-Del	0.258	1
11q-Amp	Del_9p21.3	0.259	1
7q-Amp	Xp-Del	0.26	1
TP53	7p-Amp	0.261	1
ZBTB20	7p-Amp	0.262	1
NF1	1p-Del	0.263	1
Amp_1q32.1	Amp_10p15.3	0.264	1
Del_1p36.32	Del_3p21.31	0.264	1
PTEN	Del_12q12	0.265	1
PTPN11	Del_1p36.32	0.265	1
TCF12	Del_9p23	0.265	1
SMARCA4	Del_6q26	0.268	1
DNMT3A	10q-Del	0.27	1
IDH1	Del_8q24.3	0.27	1
NUDT11	10q-Del	0.27	1
PIK3R1	4q-Del	0.27	1
10q-Del	Del_7p22.3	0.27	1
11p-Del	Del_6q26	0.273	1
Amp_10p15.3	Del_6q26	0.273	1
ENGASE	Del_9p21.3	0.276	1
FAM47C	6q-Del	0.276	1
FAM47C	Amp_12p13.32	0.276	1
NF1	Amp_4q12	0.276	1
6q-Del	Amp_4q12	0.276	1
6q-Del	Del_5q34	0.276	1
NF1	11p-Del	0.277	1
NF1	Amp_10p15.3	0.277	1
NF1	Del_4q34.3	0.277	1
11q-Amp	Del_22q13.31	0.277	1
11p-Del	6q-Del	0.277	1
6q-Del	Amp_8q24.13	0.277	1
6q-Del	Del_4q34.3	0.277	1
SMARCA4	Del_5p15.33	0.279	1
SMARCA4	Del_11p15.1	0.279	1
8q-Amp	18q-Del	0.279	1
18q-Del	Del_5p15.33	0.279	1
18q-Del	Del_11p15.1	0.279	1
PTPN11	19q-Del	0.28	1
4q-Del	Del_2q37.3	0.28	1
ARID1A	Del_11p15.5	0.281	1
FAM47C	9p-Del	0.281	1
11p-Del	Amp_7q31.2	0.281	1
FUBP1	Amp_Xp11.22	0.282	1
FUBP1	Del_Xq21.1	0.282	1
ZNF512B	Del_19q13.42	0.282	1
13q-Del	Amp_Xp11.22	0.282	1
PIK3R1	Del_4q34.3	0.284	1
CIC	Del_13q14.2	0.286	1
11q-Amp	11p-Del	0.286	1
11q-Amp	Del_14q24.3	0.286	1
18p-Del	Del_11p15.5	0.286	1
MYT1	Del_10q26.3	0.287	1
NEU2	Del_10q26.3	0.287	1
TRERF1	Del_10q26.3	0.287	1
ZNF292	Del_2q37.3	0.289	1
ARID2	1p-Del	0.29	1
DNMT3A	10p-Del	0.29	1
FUBP1	SMARCA4	0.29	1
NUDT11	10p-Del	0.29	1
SMARCA4	13q-Del	0.29	1
SMARCA4	Del_6q22.31	0.29	1
10p-Del	Del_7p22.3	0.29	1
PLXNA3	Del_11p15.5	0.292	1
SLC6A3	9p-Del	0.292	1
ZMIZ1	9p-Del	0.292	1
NOTCH1	Del_2q37.3	0.293	1
8q-Amp	Amp_19p13.3	0.293	1
NIPBL	6q-Del	0.296	1
NIPBL	Amp_12p13.32	0.296	1
PIK3R1	10p-Amp	0.297	1
7q-Amp	Del_11p15.5	0.297	1
C14orf4	Del_1p36.32	0.298	1
NOTCH1	12q-Del	0.298	1
NOTCH1	Del_3q13.31	0.298	1
SMOC1	Del_1p36.32	0.298	1
7p-Amp	Del_11p15.1	0.298	1
18p-Del	Del_9p23	0.298	1
ABCA7	Del_9p21.3	0.299	1
C9orf79	Del_9p21.3	0.299	1
TCF12	7q-Amp	0.299	1
TP53	7q-Amp	0.299	1
18p-Del	Del_2q37.3	0.299	1
Amp_19p13.3	Del_11p15.1	0.3	1
ABCA7	Del_1p36.32	0.301	1
PDGFRA	Del_1p36.32	0.301	1
PRX	Del_1p36.32	0.301	1
SETD2	Del_1p36.32	0.301	1
SMOC1	Del_1p32.3	0.301	1
STK19	Del_1p36.32	0.301	1
Amp_1q22	Del_1p36.32	0.301	1
ABCA7	Del_19q13.42	0.302	1
PRX	Del_19q13.42	0.302	1
Del_6q26	Del_11p15.1	0.303	1
19p-Amp	Del_11p15.1	0.304	1
CIC	Xq-Del	0.305	1
7p-Amp	4q-Del	0.305	1
ABCA7	Del_1p32.3	0.306	1
PDGFRA	Del_1p32.3	0.306	1
PIK3CA	10p-Amp	0.306	1
PRX	Del_1p32.3	0.306	1
SETD2	Del_1p32.3	0.306	1
PIK3CA	Amp_Xp11.22	0.307	1
PIK3CA	Del_Xq21.1	0.307	1
TCF12	Amp_7p11.2	0.307	1
CREBZF	7q-Amp	0.308	1
PTEN	8q-Amp	0.308	1
Del_13q14.2	Del_19q13.42	0.308	1
C14orf4	19q-Del	0.309	1
HTRA2	IDH1	0.309	1
IDH1	Xq-Del	0.309	1
SMOC1	19q-Del	0.309	1
ATRX	7q-Amp	0.31	1
NIPBL	9p-Del	0.31	1
NIPBL	Del_11p15.5	0.31	1
11p-Del	15q-Del	0.31	1
15q-Del	Amp_10p15.3	0.31	1
C9orf79	Amp_8q24.13	0.311	1
CUL4B	Amp_8q24.13	0.311	1
CUL4B	Del_4q34.3	0.311	1
PDGFRA	Amp_8q24.13	0.311	1
PTPN11	1p-Del	0.311	1
SETD2	Amp_8q24.13	0.311	1
Amp_12q14.1	Del_6q26	0.311	1
FUBP1	19p-Amp	0.312	1
FUBP1	Amp_3q26.33	0.312	1
19p-Amp	13q-Del	0.312	1
19p-Amp	Del_6q22.31	0.312	1
13q-Del	Amp_19p13.3	0.312	1
Amp_19p13.3	Del_6q22.31	0.312	1
CREBZF	Amp_7p11.2	0.313	1
7p-Amp	11p-Del	0.313	1
ATRX	ZNF292	0.314	1
NIPBL	Del_10q26.3	0.314	1
ZBTB20	10p-Amp	0.314	1
ZBTB20	Del_12q12	0.314	1
14q-Del	Del_3q13.31	0.316	1
EGFR	11q-Amp	0.317	1
EGFR	Del_8q24.3	0.317	1
7p-Amp	Del_6q22.31	0.317	1
18p-Del	Amp_17q25.1	0.318	1
18p-Del	Del_3q29	0.318	1
Xp-Del	Del_13q14.2	0.318	1
PIK3CA	Del_11p15.5	0.319	1
PDGFRA	19q-Del	0.32	1
PRX	19q-Del	0.32	1
SETD2	19q-Del	0.32	1
TNRC18	19q-Del	0.32	1
7q-Amp	4q-Del	0.32	1
19q-Del	Amp_1q22	0.32	1
IDH1	PLXNA3	0.321	1
PTEN	Del_11p15.1	0.322	1
TCF12	Del_14q24.3	0.322	1
PTPN11	Del_14q24.3	0.323	1
RBPJ	Del_14q24.3	0.323	1
SMARCA4	Del_1p36.32	0.323	1
ZNF292	Del_22q13.31	0.326	1
12q-Del	Del_18q23	0.326	1
ATRX	MYST4	0.328	1
CIB1	TP53	0.328	1
CIC	SMARCA4	0.328	1
MYST4	Del_6q26	0.328	1
NRAS	TP53	0.328	1
NUDT11	Del_6q26	0.328	1
ZBTB20	22q-Del	0.328	1
Amp_7q31.2	Del_11p15.1	0.328	1
CIC	Del_14q24.3	0.33	1
Amp_7q32.3	Del_14q24.3	0.33	1
C14orf4	1p-Del	0.331	1
SMARCA4	Del_1p32.3	0.331	1
SMOC1	1p-Del	0.331	1
IDH2	10p-Amp	0.332	1
IDH2	Del_12q12	0.332	1
NOTCH1	10p-Amp	0.332	1
ROBO3	Amp_7q32.3	0.333	1
Xq-Del	Amp_7q32.3	0.333	1
FUBP1	PTEN	0.334	1
FUBP1	Del_3p21.31	0.334	1
ARID2	Del_11p15.1	0.336	1
IDH2	Del_9p23	0.336	1
SMARCA4	Del_11p15.5	0.336	1
ZNF292	11p-Del	0.336	1
ZNF292	Amp_10p15.3	0.336	1
Amp_7p11.2	Del_2q37.3	0.336	1
FAM47C	18p-Del	0.338	1
FAM47C	Amp_11q24.1	0.338	1
18p-Del	Del_5q34	0.338	1
Amp_4q12	Amp_11q24.1	0.338	1
Amp_7q32.3	Amp_12p13.32	0.338	1
PIK3CA	Del_14q24.3	0.339	1
14q-Del	Amp_11q24.1	0.339	1
4q-Del	Del_10q26.3	0.339	1
C4BPA	Del_9p23	0.34	1
NF1	11q-Amp	0.34	1
PIK3R1	Amp_7q32.3	0.34	1
11q-Amp	6q-Del	0.34	1
11q-Amp	Amp_12p13.32	0.34	1
18q-Del	Del_2q37.3	0.34	1
EGFR	TCF12	0.341	1
PIK3R1	8q-Amp	0.341	1
PIK3R1	Amp_12q14.1	0.341	1
PIK3R1	Del_5p15.33	0.341	1
4p-Del	Amp_12q14.1	0.341	1
ABCA7	CIC	0.342	1
CIC	PRX	0.342	1
CIC	SETD2	0.342	1
CIC	STK19	0.342	1
CIC	Amp_1q22	0.342	1
4p-Del	Del_14q24.3	0.342	1
Amp_1q32.1	Del_11p15.5	0.342	1
SLC6A3	10q-Del	0.343	1
ZMIZ1	10q-Del	0.343	1
ATRX	Xp-Del	0.344	1
DNMT3A	13q-Del	0.344	1
FUBP1	Amp_13q34	0.344	1
MYST4	Del_6q22.31	0.344	1
NUDT11	Del_6q22.31	0.344	1
14q-Del	Del_Xq21.1	0.344	1
Del_2q37.3	Del_18q23	0.344	1
IDH2	SMARCA4	0.346	1
IDH2	22q-Del	0.346	1
19p-Amp	Del_2q37.3	0.346	1
18q-Del	Amp_17q25.1	0.346	1
18q-Del	Del_3q29	0.346	1
22q-Del	Amp_17q25.1	0.346	1
PIK3CA	Amp_10p15.3	0.347	1
10q-Del	Del_18q23	0.348	1
PLXNA3	Amp_8q24.13	0.35	1
R3HDM1	Del_19q13.42	0.35	1
RET	Del_19q13.42	0.35	1
SLC6A3	Amp_8q24.13	0.35	1
SLC6A3	Del_4q34.3	0.35	1
ZMIZ1	Del_4q34.3	0.35	1
11q-Amp	Del_13q14.2	0.35	1
Amp_2p24.3	Del_19q13.42	0.35	1
ARID1A	ATRX	0.351	1
ARID1A	Del_12q12	0.351	1
ATRX	FAM47C	0.351	1
FAM47C	10p-Amp	0.351	1
11p-Del	Amp_7q32.3	0.351	1
Amp_7q32.3	Amp_10p15.3	0.351	1
ZNF292	Del_9p21.3	0.352	1
ENGASE	Del_10q26.3	0.353	1
NOTCH1	18q-Del	0.353	1
ROBO3	Del_10q26.3	0.353	1
ZNF512B	Del_10q26.3	0.353	1
Amp_11q24.1	Del_22q13.31	0.353	1
Amp_Xp11.22	Del_18q23	0.353	1
C4BPA	Del_1p36.32	0.354	1
DLC1	Del_1p36.32	0.354	1
NEU2	Del_1p36.32	0.354	1
PLCG1	Del_1p36.32	0.354	1
13q-Del	Amp_7q31.2	0.354	1
Amp_7q31.2	Del_6q22.31	0.354	1
NF1	Amp_12p13.32	0.355	1
NOTCH1	19p-Amp	0.355	1
NOTCH1	Amp_3q26.33	0.355	1
SMARCA4	19q-Del	0.355	1
7p-Amp	Del_12q12	0.355	1
10q-Del	Del_5q34	0.355	1
DLX6	Del_9p21.3	0.357	1
ELF4	Del_9p21.3	0.357	1
4p-Del	Del_6p25.3	0.357	1
Del_3p21.31	Del_19q13.42	0.357	1
C4BPA	Del_1p32.3	0.358	1
DLC1	Del_1p32.3	0.358	1
EGFR	FUBP1	0.358	1
NEU2	Del_1p32.3	0.358	1
NIPBL	Amp_11q24.1	0.358	1
PLCG1	Del_1p32.3	0.358	1
RB1	Del_1p32.3	0.358	1
ZBTB20	8q-Amp	0.358	1
ZBTB20	Del_3p21.31	0.358	1
ZBTB20	Del_5p15.33	0.358	1
10p-Amp	Amp_7q32.3	0.358	1
DNMT3A	Del_10q26.3	0.359	1
MYST4	Del_10q26.3	0.359	1
10p-Amp	14q-Del	0.359	1
18q-Del	Del_9p23	0.359	1
4p-Del	Del_6q26	0.359	1
Del_7p22.3	Del_10q26.3	0.359	1
ABCA7	1p-Del	0.36	1
PDGFRA	1p-Del	0.36	1
PRX	1p-Del	0.36	1
SETD2	1p-Del	0.36	1
12q-Del	Del_14q24.3	0.36	1
1p-Del	Amp_1q22	0.36	1
ATRX	BRAF	0.361	1
NOTCH1	Del_18q23	0.361	1
7p-Amp	Xp-Del	0.361	1
10q-Del	Del_11p15.1	0.361	1
Amp_17q25.1	Amp_19p13.3	0.361	1
NOTCH1	9p-Del	0.362	1
Amp_19p13.3	Del_2q37.3	0.362	1
C9orf79	Del_6q26	0.363	1
PDGFRA	Del_6q26	0.363	1
SETD2	Del_6q26	0.363	1
TNRC18	Del_6q26	0.363	1
NF1	TCF12	0.364	1
NF1	15q-Del	0.364	1
NF1	9q-Del	0.364	1
SLC6A3	10p-Del	0.364	1
TCF12	Amp_12p13.32	0.364	1
ZMIZ1	10p-Del	0.364	1
15q-Del	Amp_12p13.32	0.364	1
9q-Del	Amp_12p13.32	0.364	1
Amp_19p13.3	Del_11p15.5	0.364	1
FAM47C	Del_4q34.3	0.365	1
ARID1A	22q-Del	0.366	1
CIC	14q-Del	0.366	1
CIC	Amp_19p13.3	0.366	1
FAM47C	18q-Del	0.366	1
FAM47C	22q-Del	0.366	1
ROBO3	Amp_7q31.2	0.366	1
SMARCA4	Amp_4q12	0.366	1
18q-Del	Amp_4q12	0.366	1
18q-Del	Del_5q34	0.366	1
4q-Del	Amp_1q32.1	0.366	1
Xq-Del	Amp_7q31.2	0.366	1
ANKRD36	Del_13q14.2	0.367	1
EGFR	12q-Del	0.367	1
EGFR	Del_3q13.31	0.367	1
SLC12A7	Del_13q14.2	0.367	1
11p-Del	18p-Del	0.368	1
ATRX	11q-Amp	0.369	1
C4BPA	19q-Del	0.369	1
DLC1	19q-Del	0.369	1
IDH1	NIPBL	0.369	1
PLCG1	19q-Del	0.369	1
RB1	19q-Del	0.369	1
Amp_7q32.3	Del_11p15.1	0.369	1
10q-Del	Amp_10p15.3	0.37	1
4q-Del	Amp_7q31.2	0.37	1
STK19	Del_11p15.1	0.371	1
TNRC18	Del_11p15.1	0.371	1
NIPBL	10p-Amp	0.372	1
NIPBL	Del_12q12	0.372	1
PIK3CA	Del_5p15.33	0.372	1
FAM47C	Del_9p23	0.373	1
PIK3R1	4p-Del	0.373	1
19p-Amp	14q-Del	0.373	1
10p-Amp	Del_18q23	0.374	1
7q-Amp	Del_13q14.2	0.374	1
IDH2	PTEN	0.376	1
IDH2	Del_5p15.33	0.376	1
PTEN	Amp_17q25.1	0.376	1
Amp_17q25.1	Del_5p15.33	0.376	1
ATRX	KRAS	0.377	1
NUDT11	Del_2q37.3	0.378	1
C9orf79	13q-Del	0.379	1
C9orf79	Del_6q22.31	0.379	1
IDH1	Del_3q13.31	0.379	1
SETD2	Del_6q22.31	0.379	1
TNRC18	13q-Del	0.379	1
18p-Del	Amp_1q32.1	0.379	1
Amp_1q32.1	Amp_11q24.1	0.379	1
DLC1	Del_14q24.3	0.38	1
FAM47C	Amp_19p13.3	0.38	1
G6PC	Del_14q24.3	0.38	1
MYT1	Del_14q24.3	0.38	1
ZBTB20	Amp_7q32.3	0.38	1
Amp_4q12	Amp_19p13.3	0.38	1
Amp_11q24.1	Del_1p36.32	0.381	1
PDGFRA	Amp_7q32.3	0.383	1
19p-Amp	Del_18q23	0.383	1
1p-Del	Amp_17q25.1	0.383	1
4p-Del	Del_6q22.31	0.383	1
Amp_3q26.33	Del_18q23	0.383	1
CREBZF	Del_11p15.5	0.385	1
PTEN	Del_2q37.3	0.385	1
PTPN11	Del_11p15.5	0.385	1
RBPJ	Del_11p15.5	0.385	1
RET	9p-Del	0.385	1
RET	Del_11p15.5	0.385	1
SLC12A7	Del_11p15.5	0.385	1
ZBTB20	Del_6q26	0.385	1
4p-Del	Del_10q26.3	0.385	1
6q-Del	Del_11p15.1	0.385	1
Amp_12q14.1	Del_2q37.3	0.385	1
GAGE2A	TP53	0.386	1
NIPBL	10q-Del	0.386	1
NIPBL	22q-Del	0.386	1
CIC	KRT3	0.387	1
CIC	NRAS	0.387	1
IRS4	10q-Del	0.387	1
NOTCH1	Amp_13q34	0.387	1
NOTCH1	Del_14q24.3	0.388	1
NF1	12q-Del	0.389	1
ZNF292	6q-Del	0.389	1
Amp_10p15.3	Del_12q12	0.389	1
CUL4B	IDH1	0.39	1
IDH1	Amp_1q22	0.39	1
Amp_11q24.1	Del_1p32.3	0.39	1
PIK3CA	Del_11p15.1	0.391	1
IDH2	Del_6p25.3	0.392	1
10p-Amp	Amp_1q32.1	0.393	1
19p-Amp	11p-Del	0.393	1
19p-Amp	Amp_10p15.3	0.393	1
8q-Amp	9p-Del	0.393	1
10p-Del	Del_18q23	0.393	1
9p-Del	Amp_12q14.1	0.393	1
GAGE2A	Del_4q34.3	0.394	1
EGFR	4q-Del	0.395	1
EGFR	Amp_Xp11.22	0.395	1
EGFR	Del_Xq21.1	0.395	1
SMARCA4	Del_22q13.31	0.395	1
ARID1A	8q-Amp	0.396	1
ARID1A	Amp_12q14.1	0.396	1
FAM47C	8q-Amp	0.396	1
FAM47C	Del_3p21.31	0.396	1
NIPBL	Del_4q34.3	0.396	1
ZBTB20	Del_11p15.1	0.397	1
19p-Amp	Del_1p36.32	0.397	1
FUBP1	Del_4q34.3	0.398	1
7q-Amp	14q-Del	0.398	1
Amp_7q32.3	Del_6q22.31	0.398	1
Del_4q34.3	Del_6q22.31	0.398	1
Amp_12p13.32	Del_6q22.31	0.4	1
SLC6A3	Del_19q13.42	0.401	1
C4BPA	1p-Del	0.402	1
DLC1	1p-Del	0.402	1
NEU2	1p-Del	0.402	1
PLCG1	1p-Del	0.402	1
RB1	1p-Del	0.402	1
SLC6A3	Del_6q26	0.402	1
Amp_11q24.1	Del_8q24.3	0.402	1
CIC	PLXNA3	0.403	1
SETD2	TP53	0.403	1
Amp_Xp11.22	Del_14q24.3	0.403	1
Del_14q24.3	Del_Xq21.1	0.403	1
10p-Amp	10q-Del	0.404	1
PIK3CA	Amp_1q22	0.405	1
7q-Amp	6q-Del	0.405	1
ARID2	14q-Del	0.406	1
NUDT11	14q-Del	0.406	1
14q-Del	Del_7p22.3	0.406	1
ENGASE	Del_9p23	0.407	1
SMARCA4	Amp_1q32.1	0.407	1
TCF12	Amp_7q32.3	0.407	1
15q-Del	Amp_7q32.3	0.407	1
18q-Del	Amp_1q32.1	0.407	1
22q-Del	Amp_1q32.1	0.407	1
Amp_7p11.2	Del_6q22.31	0.407	1
IRS4	10p-Del	0.408	1
1p-Del	Del_14q24.3	0.408	1
IDH2	PIK3R1	0.409	1
PIK3R1	Amp_17q25.1	0.409	1
PIK3R1	Del_3q29	0.409	1
ZBTB20	Del_6q22.31	0.409	1
CREBZF	7p-Amp	0.41	1
PLXNA3	Del_11p15.1	0.41	1
SLC6A3	Del_11p15.1	0.41	1
SMARCA4	11p-Del	0.41	1
Del_3q29	Del_14q24.3	0.41	1
FAM47C	Del_6p25.3	0.412	1
PIK3R1	Amp_7q31.2	0.412	1
C9orf79	Del_2q37.3	0.413	1
CUL4B	Del_2q37.3	0.413	1
PDGFRA	Del_2q37.3	0.413	1
PRX	Del_2q37.3	0.413	1
STK19	Del_2q37.3	0.413	1
TCF12	9p-Del	0.413	1
TNRC18	Del_2q37.3	0.413	1
15q-Del	Del_11p15.5	0.413	1
TNRC18	Del_10q26.3	0.414	1
Del_18q23	Del_22q13.31	0.414	1
ARID2	Del_18q23	0.415	1
DNMT3A	Del_22q13.31	0.415	1
KRT3	Amp_7q32.3	0.415	1
MYST4	Del_22q13.31	0.415	1
NAP1L2	Amp_7q32.3	0.415	1
NRAS	Amp_7q32.3	0.415	1
NUDT11	Del_18q23	0.415	1
11q-Amp	Del_12q12	0.415	1
11p-Del	14q-Del	0.415	1
Del_7p22.3	Del_18q23	0.415	1
NIPBL	8q-Amp	0.416	1
NIPBL	Del_3p21.31	0.416	1
NIPBL	Del_5p15.33	0.416	1
19q-Del	Amp_11q24.1	0.416	1
ABCA7	ATRX	0.417	1
ATRX	C9orf79	0.417	1
ATRX	PRX	0.417	1
NF1	Del_Xq21.1	0.417	1
NIPBL	10p-Del	0.417	1
6q-Del	Amp_7p11.2	0.417	1
Amp_8q24.13	Del_12q12	0.417	1
ARID1A	7q-Amp	0.418	1
SLC6A3	Del_6q22.31	0.418	1
Del_6q26	Del_19q13.42	0.418	1
DLX6	Del_19q13.42	0.419	1
KRT3	Del_19q13.42	0.419	1
PIK3R1	Del_9p21.3	0.419	1
SMARCB1	Del_19q13.42	0.419	1
7p-Amp	Del_13q14.2	0.421	1
NOTCH1	Amp_1q22	0.422	1
SMARCA4	1p-Del	0.422	1
C4BPA	Del_13q14.2	0.424	1
DLC1	Del_13q14.2	0.424	1
EGFR	Amp_3q26.33	0.424	1
NEU2	Del_13q14.2	0.424	1
PPL	Del_13q14.2	0.424	1
ARID2	11p-Del	0.425	1
MYST4	11p-Del	0.425	1
TCF12	18p-Del	0.426	1
ZBTB20	Amp_17q25.1	0.426	1
ZNF292	Del_13q14.2	0.426	1
9q-Del	Amp_11q24.1	0.426	1
8q-Amp	Del_9p23	0.427	1
ARID1A	Amp_7p11.2	0.428	1
FAM47C	4p-Del	0.428	1
NF1	Amp_7q31.2	0.428	1
PIK3R1	Amp_4q12	0.428	1
Amp_1q32.1	Del_4q34.3	0.428	1
ATRX	Del_22q13.31	0.429	1
SMARCA4	Del_8q24.3	0.43	1
11q-Amp	22q-Del	0.43	1
NOTCH1	Del_11p15.1	0.431	1
7p-Amp	6q-Del	0.431	1
NIPBL	Del_6p25.3	0.432	1
ROBO3	7q-Amp	0.432	1
7p-Amp	Del_14q24.3	0.432	1
7q-Amp	Xq-Del	0.432	1
IDH1	18p-Del	0.433	1
PDGFRA	Amp_7q31.2	0.433	1
TP53	Del_14q24.3	0.433	1
CIB1	Del_10q26.3	0.435	1
DLX6	Del_10q26.3	0.435	1
ELF4	Del_10q26.3	0.435	1
NRAS	Del_10q26.3	0.435	1
SMARCB1	Del_10q26.3	0.435	1
Del_6q22.31	Del_11p15.5	0.435	1
CREBZF	10q-Del	0.436	1
R3HDM1	10q-Del	0.436	1
RBPJ	10q-Del	0.436	1
10q-Del	Amp_2p24.3	0.436	1
FUBP1	IDH2	0.437	1
IDH2	13q-Del	0.437	1
PIK3CA	Amp_7q31.2	0.437	1
ROBO3	Amp_7p11.2	0.437	1
8q-Amp	Amp_1q32.1	0.437	1
Amp_1q32.1	Del_3p21.31	0.437	1
Amp_17q25.1	Del_6q22.31	0.437	1
MYST4	Del_9p23	0.439	1
TCF12	Del_12q12	0.439	1
10p-Amp	15q-Del	0.439	1
10p-Amp	Amp_7q31.2	0.439	1
9q-Del	Del_12q12	0.439	1
Amp_13q34	Del_9p23	0.439	1
7p-Amp	Del_5p15.33	0.44	1
ABCA7	14q-Del	0.441	1
NF1	Del_1p36.32	0.441	1
STK19	14q-Del	0.441	1
ARID1A	Del_6q26	0.442	1
C4BPA	9p-Del	0.442	1
CIC	Amp_11q24.1	0.442	1
DLC1	Del_11p15.5	0.442	1
DNMT3A	Del_19q13.42	0.442	1
NEU2	Del_11p15.5	0.442	1
PLCG1	Del_11p15.5	0.442	1
PPL	9p-Del	0.442	1
PPL	Del_11p15.5	0.442	1
RB1	Del_11p15.5	0.442	1
TRERF1	Del_11p15.5	0.442	1
IDH1	Del_13q14.2	0.443	1
PTPN11	Amp_8q24.13	0.443	1
PTPN11	Del_4q34.3	0.443	1
R3HDM1	Del_4q34.3	0.443	1
RBPJ	Amp_8q24.13	0.443	1
RET	Amp_8q24.13	0.443	1
SLC12A7	Amp_8q24.13	0.443	1
18q-Del	Del_9p21.3	0.443	1
SLC6A3	Amp_7q32.3	0.444	1
Amp_19p13.3	Del_8q24.3	0.444	1
GAGE2A	Del_6q26	0.445	1
IDH2	Amp_17q25.1	0.445	1
IDH2	Del_3q29	0.445	1
ZBTB20	Amp_4q12	0.445	1
ZBTB20	Del_5q34	0.445	1
ATRX	TCF12	0.446	1
NF1	19p-Amp	0.446	1
19p-Amp	6q-Del	0.446	1
19p-Amp	Amp_12p13.32	0.446	1
ARID1A	Del_14q24.3	0.447	1
BRAF	Del_14q24.3	0.447	1
EMG1	Del_14q24.3	0.447	1
NF1	PIK3CA	0.447	1
NOTCH1	4p-Del	0.447	1
PIK3CA	6q-Del	0.447	1
ZNF512B	Del_14q24.3	0.447	1
Amp_4q12	Del_14q24.3	0.447	1
KRT3	Amp_7q31.2	0.448	1
NAP1L2	Amp_7q31.2	0.448	1
NRAS	Amp_7q31.2	0.448	1
18p-Del	Amp_12p13.32	0.448	1
Amp_7q31.2	Amp_10p15.3	0.448	1
Amp_11q24.1	Amp_12p13.32	0.448	1
NOTCH1	13q-Del	0.449	1
ABCA7	Del_22q13.31	0.45	1
ATRX	PTPN11	0.45	1
CUL4B	Del_22q13.31	0.45	1
IDH1	Del_3p21.31	0.45	1
PDGFRA	Del_22q13.31	0.45	1
SETD2	Del_22q13.31	0.45	1
STK19	Del_22q13.31	0.45	1
TCF12	7p-Amp	0.45	1
TNRC18	Del_18q23	0.45	1
TNRC18	Del_22q13.31	0.45	1
Amp_1q22	Del_22q13.31	0.45	1
NOTCH1	Del_9p23	0.451	1
ZNF292	Amp_11q24.1	0.451	1
12q-Del	18p-Del	0.451	1
12q-Del	Amp_11q24.1	0.451	1
18p-Del	Del_3q13.31	0.451	1
PLXNA3	Del_2q37.3	0.452	1
ZBTB20	Amp_7q31.2	0.452	1
14q-Del	Amp_7q32.3	0.452	1
SMARCA4	15q-Del	0.453	1
SMARCA4	9q-Del	0.453	1
TCF12	18q-Del	0.453	1
TCF12	22q-Del	0.453	1
7q-Amp	11p-Del	0.453	1
Amp_7q31.2	Del_6q26	0.454	1
PTEN	11p-Del	0.455	1
EGFR	Del_7p22.3	0.456	1
4p-Del	9p-Del	0.456	1
CREBZF	10p-Del	0.457	1
EGFR	SMARCA4	0.457	1
IDH1	Amp_13q34	0.457	1
R3HDM1	10p-Del	0.457	1
RBPJ	10p-Del	0.457	1
10p-Del	Amp_2p24.3	0.457	1
PIK3CA	Del_13q14.2	0.458	1
Amp_7q32.3	Del_3q13.31	0.458	1
PTEN	11q-Amp	0.459	1
11q-Amp	Amp_12q14.1	0.459	1
11q-Amp	Del_3p21.31	0.459	1
11q-Amp	Del_5p15.33	0.459	1
7p-Amp	Del_6q26	0.459	1
ABCA7	Amp_10p15.3	0.46	1
C9orf79	Amp_10p15.3	0.46	1
CUL4B	Amp_10p15.3	0.46	1
PRX	11p-Del	0.46	1
STK19	11p-Del	0.46	1
STK19	Amp_10p15.3	0.46	1
TNRC18	11p-Del	0.46	1
Amp_1q22	Amp_10p15.3	0.46	1
FUBP1	Xp-Del	0.461	1
GAGE2A	13q-Del	0.461	1
GAGE2A	Del_6q22.31	0.461	1
13q-Del	Xp-Del	0.461	1
11q-Amp	Amp_8q24.13	0.462	1
11q-Amp	Del_4q34.3	0.462	1
ARID1A	Del_3q29	0.463	1
FAM47C	IDH2	0.463	1
FAM47C	Amp_17q25.1	0.463	1
IDH2	Amp_4q12	0.463	1
IDH2	Del_5q34	0.463	1
MED9	Del_9p21.3	0.463	1
ENGASE	Del_1p36.32	0.464	1
HTRA2	Del_1p36.32	0.464	1
ZNF292	Del_12q12	0.464	1
ZNF512B	Del_1p36.32	0.464	1
4q-Del	Amp_Xp11.22	0.465	1
ARID1A	Amp_7q32.3	0.466	1
ARID1A	Del_6q22.31	0.466	1
FAM47C	13q-Del	0.466	1
FAM47C	Del_6q22.31	0.466	1
FUBP1	Del_5q34	0.466	1
Amp_4q12	Amp_7q32.3	0.466	1
Amp_4q12	Del_6q22.31	0.466	1
ENGASE	Del_1p32.3	0.468	1
HTRA2	Del_1p32.3	0.468	1
TCF12	Amp_19p13.3	0.468	1
ZNF512B	Del_1p32.3	0.468	1
NF1	Del_12q12	0.469	1
PIK3R1	Amp_1q32.1	0.469	1
15q-Del	Amp_7q31.2	0.469	1
4p-Del	Amp_1q32.1	0.469	1
7p-Amp	Del_6p25.3	0.47	1
14q-Del	Del_11p15.1	0.472	1
NIPBL	Del_6q26	0.473	1
PIK3CA	Amp_17q25.1	0.475	1
7q-Amp	Del_7p22.3	0.475	1
14q-Del	4p-Del	0.475	1
C4BPA	Del_19q13.42	0.476	1
G6PC	Del_19q13.42	0.476	1
NEU2	Del_19q13.42	0.476	1
22q-Del	Amp_7q31.2	0.476	1
DNMT3A	Del_1p36.32	0.477	1
4q-Del	Amp_7q32.3	0.477	1
Amp_Xp11.22	Del_19q13.42	0.477	1
Del_1p36.32	Del_7p22.3	0.477	1
Del_19q13.42	Del_Xq21.1	0.477	1
ARID2	Amp_12p13.32	0.478	1
ATRX	Amp_3q26.33	0.478	1
ATRX	Del_9p21.3	0.478	1
MYST4	6q-Del	0.478	1
MYST4	Amp_12p13.32	0.478	1
NF1	Amp_13q34	0.478	1
NUDT11	6q-Del	0.478	1
SMARCA4	12q-Del	0.478	1
ZNF292	22q-Del	0.478	1
12q-Del	18q-Del	0.478	1
18p-Del	Amp_Xp11.22	0.478	1
18p-Del	Del_Xq21.1	0.478	1
Amp_12p13.32	Del_7p22.3	0.478	1
PLXNA3	14q-Del	0.479	1
SLC6A3	14q-Del	0.479	1
ZNF512B	19q-Del	0.48	1
19q-Del	Xq-Del	0.48	1
IDH1	13q-Del	0.481	1
NOTCH1	6q-Del	0.481	1
ARID1A	Amp_4q12	0.482	1
ARID1A	Del_5q34	0.482	1
DNMT3A	Amp_7p11.2	0.482	1
NUDT11	Amp_7p11.2	0.482	1
TCF12	8q-Amp	0.482	1
TCF12	Amp_12q14.1	0.482	1
TCF12	Del_3p21.31	0.482	1
TCF12	Del_5p15.33	0.482	1
8q-Amp	15q-Del	0.482	1
8q-Amp	9q-Del	0.482	1
15q-Del	Amp_12q14.1	0.482	1
9q-Del	Del_5p15.33	0.482	1
DNMT3A	Del_1p32.3	0.483	1
NIPBL	Amp_17q25.1	0.483	1
NIPBL	Del_3q29	0.483	1
Del_1p32.3	Del_7p22.3	0.483	1
IDH1	R3HDM1	0.484	1
IDH1	RBPJ	0.484	1
IDH1	SLC12A7	0.484	1
Amp_7q32.3	Del_22q13.31	0.485	1
PIK3CA	Xp-Del	0.486	1
ZBTB20	Amp_1q32.1	0.486	1
Amp_17q25.1	Del_1p36.32	0.486	1
Amp_11q24.1	Del_6q26	0.487	1
CIB1	Del_9p23	0.488	1
DLX6	Del_9p23	0.488	1
ELF4	Del_9p23	0.488	1
PIK3CA	Amp_7q32.3	0.488	1
PLXNA3	Del_22q13.31	0.488	1
SLC6A3	Del_18q23	0.488	1
SLC6A3	Del_22q13.31	0.488	1
ZMIZ1	Del_22q13.31	0.488	1
PIK3R1	Del_22q13.31	0.489	1
TCF12	10q-Del	0.489	1
10q-Del	Del_3p21.31	0.489	1
1p-Del	Amp_11q24.1	0.489	1
4p-Del	Del_22q13.31	0.489	1
BRAF	Del_13q14.2	0.49	1
ENGASE	Del_13q14.2	0.49	1
HTRA2	Del_13q14.2	0.49	1
NF1	SMARCA4	0.49	1
ROBO3	Del_13q14.2	0.49	1
Xq-Del	Del_13q14.2	0.49	1
C14orf4	CIC	0.491	1
CIC	SMOC1	0.491	1
IDH2	Del_13q14.2	0.491	1
MYT1	10q-Del	0.491	1
NEU2	10q-Del	0.491	1
PPL	10q-Del	0.491	1
TRERF1	10q-Del	0.491	1
4p-Del	Del_8q24.3	0.491	1
Amp_7p11.2	Del_5p15.33	0.491	1
ABCA7	Del_9p23	0.493	1
C9orf79	Del_9p23	0.493	1
CUL4B	Del_9p23	0.493	1
PTPN11	Del_6q26	0.493	1
RBPJ	Del_6q26	0.493	1
RET	Del_6q26	0.493	1
SLC6A3	Amp_7q31.2	0.493	1
TNRC18	Del_9p23	0.493	1
Amp_17q25.1	Del_1p32.3	0.493	1
Del_11p15.1	Del_18q23	0.493	1
GAGE2A	Del_2q37.3	0.494	1
19p-Amp	4q-Del	0.494	1
4q-Del	Amp_3q26.33	0.494	1
9p-Del	Del_Xq21.1	0.494	1
7p-Amp	Del_18q23	0.495	1
NIPBL	Del_6q22.31	0.496	1
DNMT3A	Del_14q24.3	0.497	1
MYST4	Del_14q24.3	0.497	1
NUDT11	Del_14q24.3	0.497	1
PLXNA3	11p-Del	0.497	1
SLC6A3	11p-Del	0.497	1
ZMIZ1	11p-Del	0.497	1
ZMIZ1	Amp_10p15.3	0.497	1
Amp_13q34	Del_14q24.3	0.497	1
C4BPA	Del_4q34.3	0.498	1
DLC1	Amp_8q24.13	0.498	1
G6PC	Amp_8q24.13	0.498	1
NEU2	Amp_8q24.13	0.498	1
NEU2	Del_4q34.3	0.498	1
PLCG1	Amp_8q24.13	0.498	1
PLCG1	Del_4q34.3	0.498	1
PPL	Del_4q34.3	0.498	1
RB1	Amp_8q24.13	0.498	1
TRERF1	Del_4q34.3	0.498	1
ATRX	SMARCB1	0.499	1
ATRX	SRPX	0.499	1
15q-Del	Del_4q34.3	0.499	1
9q-Del	Amp_8q24.13	0.499	1
DNMT3A	19q-Del	0.5	1
CREBZF	Del_11p15.1	0.501	1
IDH2	NOTCH1	0.501	1
NIPBL	Amp_4q12	0.501	1
NIPBL	Del_5q34	0.501	1
PTEN	Del_4q34.3	0.501	1
PTPN11	Del_11p15.1	0.501	1
R3HDM1	Del_11p15.1	0.501	1
RBPJ	Del_11p15.1	0.501	1
RET	Del_11p15.1	0.501	1
SLC12A7	Del_11p15.1	0.501	1
Amp_8q24.13	Del_3p21.31	0.501	1
NOTCH1	Xp-Del	0.502	1
18p-Del	Del_11p15.1	0.502	1
FAM47C	PIK3CA	0.503	1
IDH2	Amp_1q32.1	0.503	1
PIK3CA	Del_5q34	0.503	1
7p-Amp	13q-Del	0.503	1
Amp_1q32.1	Amp_17q25.1	0.503	1
Amp_1q32.1	Del_3q29	0.503	1
18q-Del	Amp_Xp11.22	0.504	1
18q-Del	Del_Xq21.1	0.504	1
4p-Del	Amp_10p15.3	0.504	1
Amp_1q32.1	Del_6q26	0.504	1
R3HDM1	Del_9p21.3	0.505	1
RET	Del_9p21.3	0.505	1
BRAF	Del_11p15.5	0.506	1
EMG1	Del_11p15.5	0.506	1
ENGASE	9p-Del	0.506	1
ROBO3	Del_11p15.5	0.506	1
ZNF512B	9p-Del	0.506	1
ZNF512B	Del_11p15.5	0.506	1
19p-Amp	18p-Del	0.506	1
18p-Del	Amp_3q26.33	0.506	1
PTEN	12q-Del	0.507	1
ZBTB20	11q-Amp	0.507	1
ZNF292	Amp_12q14.1	0.507	1
ZNF292	Del_3p21.31	0.507	1
ZNF292	Del_5p15.33	0.507	1
Amp_12q14.1	Del_3q13.31	0.507	1
Del_3q13.31	Del_5p15.33	0.507	1
ANKRD36	FUBP1	0.508	1
CREBZF	13q-Del	0.508	1
FUBP1	PTPN11	0.508	1
FUBP1	Amp_2p24.3	0.508	1
PTPN11	Del_6q22.31	0.508	1
RET	Del_6q22.31	0.508	1
SLC12A7	13q-Del	0.508	1
7q-Amp	Del_6q26	0.508	1
13q-Del	1p-Del	0.51	1
ABCA7	Amp_12p13.32	0.511	1
C9orf79	6q-Del	0.511	1
C9orf79	Amp_12p13.32	0.511	1
CUL4B	Amp_12p13.32	0.511	1
ENGASE	1p-Del	0.511	1
FUBP1	Del_18q23	0.511	1
HTRA2	1p-Del	0.511	1
KRT3	7q-Amp	0.511	1
MYT1	10p-Del	0.511	1
NAP1L2	7q-Amp	0.511	1
NEU2	10p-Del	0.511	1
NRAS	7q-Amp	0.511	1
PDGFRA	6q-Del	0.511	1
PPL	10p-Del	0.511	1
ROBO3	1p-Del	0.511	1
SETD2	6q-Del	0.511	1
STK19	Amp_12p13.32	0.511	1
TNRC18	6q-Del	0.511	1
TRERF1	10p-Del	0.511	1
ZNF512B	1p-Del	0.511	1
6q-Del	Amp_19p13.3	0.511	1
Amp_12p13.32	Amp_19p13.3	0.511	1
Amp_7p11.2	Del_4q34.3	0.512	1
Amp_7q32.3	Del_Xq21.1	0.512	1
PIK3R1	TCF12	0.513	1
IDH1	Del_18q23	0.514	1
Amp_7q32.3	Del_6p25.3	0.514	1
Amp_8q24.13	Del_10q26.3	0.515	1
Del_4q34.3	Del_10q26.3	0.515	1
ARID1A	Del_2q37.3	0.516	1
MED9	TP53	0.516	1
NAP1L2	Amp_7p11.2	0.516	1
NRAS	Amp_7p11.2	0.516	1
TP53	ZNF709	0.516	1
7q-Amp	Del_6p25.3	0.516	1
18p-Del	9p-Del	0.516	1
Amp_1q32.1	Del_11p15.1	0.516	1
Amp_4q12	Del_2q37.3	0.516	1
MED9	Amp_7q32.3	0.517	1
NF1	Amp_7q32.3	0.517	1
ZNF709	Amp_7q32.3	0.517	1
Amp_11q24.1	Del_6q22.31	0.517	1
ATRX	PLXNA3	0.518	1
ATRX	ZMIZ1	0.518	1
Amp_19p13.3	Amp_Xp11.22	0.518	1
TCF12	10p-Del	0.519	1
10p-Amp	19p-Amp	0.519	1
10p-Amp	Amp_3q26.33	0.519	1
19p-Amp	Del_12q12	0.519	1
EMG1	TP53	0.52	1
GAGE2A	14q-Del	0.52	1
4q-Del	Amp_11q24.1	0.52	1
ARID1A	Amp_1q32.1	0.521	1
ZNF292	Del_6p25.3	0.522	1
13q-Del	Del_19q13.42	0.522	1
DNMT3A	4q-Del	0.524	1
IDH2	Del_8q24.3	0.524	1
RET	TP53	0.524	1
SLC12A7	TP53	0.524	1
4q-Del	Amp_13q34	0.524	1
Amp_7q32.3	Del_13q14.2	0.524	1
Amp_17q25.1	Del_8q24.3	0.524	1
Amp_17q25.1	Del_11p15.5	0.524	1
CIB1	Del_14q24.3	0.525	1
DLX6	Del_14q24.3	0.525	1
KRT3	Del_14q24.3	0.525	1
NAP1L2	Del_14q24.3	0.525	1
PLXNA3	TP53	0.527	1
TP53	ZMIZ1	0.527	1
10p-Del	Del_3p21.31	0.527	1
10p-Del	Del_5p15.33	0.527	1
13q-Del	Amp_1q32.1	0.527	1
14q-Del	Del_3q29	0.527	1
Amp_7p11.2	Del_6p25.3	0.527	1
PDGFRA	7q-Amp	0.528	1
14q-Del	Del_19q13.42	0.528	1
ARID2	TP53	0.529	1
DNMT3A	TP53	0.529	1
GAGE2A	Del_18q23	0.529	1
MYST4	TP53	0.529	1
NOTCH1	Amp_4q12	0.529	1
TCF12	ZBTB20	0.529	1
ZBTB20	11p-Del	0.529	1
ZBTB20	9q-Del	0.529	1
C14orf4	IDH1	0.53	1
IDH1	MED9	0.53	1
IDH1	TMEM216	0.53	1
MYST4	Del_9p21.3	0.53	1
ROBO3	7p-Amp	0.53	1
7p-Amp	Xq-Del	0.53	1
Amp_13q34	Del_9p21.3	0.53	1
Del_4q34.3	Del_6p25.3	0.531	1
ANKRD36	PIK3CA	0.532	1
PIK3CA	RBPJ	0.532	1
PIK3CA	Amp_2p24.3	0.532	1
PTEN	Amp_Xp11.22	0.532	1
PTEN	Del_Xq21.1	0.532	1
SMARCA4	Amp_3q26.33	0.532	1
19p-Amp	18q-Del	0.532	1
18q-Del	Amp_3q26.33	0.532	1
Amp_12q14.1	Amp_Xp11.22	0.532	1
Amp_Xp11.22	Del_3p21.31	0.532	1
NF1	Del_5p15.33	0.533	1
14q-Del	1p-Del	0.533	1
6q-Del	Del_5p15.33	0.533	1
7q-Amp	Del_11p15.1	0.534	1
Amp_7q31.2	Del_13q14.2	0.534	1
6q-Del	Del_19q13.42	0.535	1
ARID2	18p-Del	0.536	1
C14orf4	Del_10q26.3	0.536	1
NUDT11	18p-Del	0.536	1
NUDT11	Amp_11q24.1	0.536	1
SMOC1	Del_10q26.3	0.536	1
TMEM216	Del_10q26.3	0.536	1
ZNF709	Del_10q26.3	0.536	1
18p-Del	Del_7p22.3	0.536	1
Amp_8q24.13	Del_3q13.31	0.536	1
IDH1	18q-Del	0.537	1
PIK3R1	Del_3q13.31	0.537	1
ARID1A	TP53	0.538	1
ARID1A	Amp_7q31.2	0.538	1
ATRX	Amp_4q12	0.539	1
Del_9p23	Del_12q12	0.539	1
CREBZF	Del_2q37.3	0.54	1
PTPN11	Del_2q37.3	0.54	1
RBPJ	Del_2q37.3	0.54	1
SLC12A7	Del_2q37.3	0.54	1
GAGE2A	Del_10q26.3	0.541	1
Amp_17q25.1	Del_22q13.31	0.541	1
FAM47C	11q-Amp	0.542	1
11q-Amp	Amp_4q12	0.542	1
13q-Del	19q-Del	0.544	1
C4BPA	Del_6q26	0.546	1
DLC1	Del_6q26	0.546	1
DNMT3A	1p-Del	0.546	1
G6PC	Del_6q26	0.546	1
IDH2	TCF12	0.546	1
IDH2	15q-Del	0.546	1
IDH2	9q-Del	0.546	1
MYT1	Del_6q26	0.546	1
PPL	Del_6q26	0.546	1
TCF12	Amp_17q25.1	0.546	1
TCF12	Del_3q29	0.546	1
TRERF1	Del_6q26	0.546	1
15q-Del	Amp_17q25.1	0.546	1
15q-Del	Del_3q29	0.546	1
18p-Del	Del_9p21.3	0.546	1
1p-Del	Del_7p22.3	0.546	1
CIC	PTPN11	0.547	1
SLC6A3	6q-Del	0.547	1
SLC6A3	Amp_12p13.32	0.547	1
ZMIZ1	Amp_12p13.32	0.547	1
Amp_Xp11.22	Del_6p25.3	0.547	1
ANKRD36	NOTCH1	0.548	1
ARID2	Del_12q12	0.548	1
DNMT3A	Del_12q12	0.548	1
EGFR	PIK3R1	0.548	1
EGFR	4p-Del	0.548	1
MED9	Amp_7q31.2	0.548	1
MYST4	10p-Amp	0.548	1
MYST4	Del_12q12	0.548	1
NOTCH1	PTPN11	0.548	1
NOTCH1	RBPJ	0.548	1
ZNF709	Amp_7q31.2	0.548	1
10p-Amp	Amp_13q34	0.548	1
NF1	Del_13q14.2	0.549	1
PIK3R1	10q-Del	0.549	1
Del_10q26.3	Del_18q23	0.549	1
ABCA7	Del_14q24.3	0.55	1
C9orf79	Del_14q24.3	0.55	1
PDGFRA	Del_14q24.3	0.55	1
STK19	Del_14q24.3	0.55	1
TNRC18	Del_14q24.3	0.55	1
13q-Del	Amp_7q32.3	0.55	1
PLXNA3	Del_9p23	0.551	1
11q-Amp	Amp_7p11.2	0.551	1
C4BPA	Del_11p15.1	0.553	1
DLC1	Del_11p15.1	0.553	1
NEU2	Del_11p15.1	0.553	1
PIK3R1	7q-Amp	0.553	1
PLCG1	Del_11p15.1	0.553	1
PPL	Del_11p15.1	0.553	1
RB1	Del_11p15.1	0.553	1
TRERF1	Del_11p15.1	0.553	1
ZBTB20	12q-Del	0.553	1
ZBTB20	Del_3q13.31	0.553	1
EMG1	10q-Del	0.554	1
ENGASE	10q-Del	0.554	1
HTRA2	10q-Del	0.554	1
ROBO3	10q-Del	0.554	1
ZNF512B	10q-Del	0.554	1
ARID1A	14q-Del	0.555	1
C9orf79	4q-Del	0.556	1
CUL4B	4q-Del	0.556	1
SETD2	4q-Del	0.556	1
STK19	4q-Del	0.556	1
10p-Amp	18p-Del	0.558	1
10p-Amp	Amp_11q24.1	0.558	1
19p-Amp	8q-Amp	0.559	1
BRAF	Amp_8q24.13	0.56	1
BRAF	Del_4q34.3	0.56	1
C4BPA	13q-Del	0.56	1
C4BPA	Del_6q22.31	0.56	1
DLC1	13q-Del	0.56	1
DLC1	Del_6q22.31	0.56	1
EMG1	Amp_8q24.13	0.56	1
EMG1	Del_4q34.3	0.56	1
ENGASE	Del_4q34.3	0.56	1
FUBP1	PLCG1	0.56	1
FUBP1	11q-Amp	0.56	1
G6PC	13q-Del	0.56	1
G6PC	Del_6q22.31	0.56	1
MYT1	Del_6q22.31	0.56	1
NEU2	13q-Del	0.56	1
NIPBL	11q-Amp	0.56	1
NIPBL	Del_8q24.3	0.56	1
PLCG1	13q-Del	0.56	1
PPL	13q-Del	0.56	1
PPL	Del_6q22.31	0.56	1
ROBO3	Amp_8q24.13	0.56	1
ROBO3	Del_4q34.3	0.56	1
TRERF1	13q-Del	0.56	1
TRERF1	Del_6q22.31	0.56	1
ZNF512B	Amp_8q24.13	0.56	1
Xq-Del	Amp_8q24.13	0.56	1
Del_7p22.3	Del_13q14.2	0.56	1
ARID2	18q-Del	0.561	1
DNMT3A	22q-Del	0.561	1
GAGE2A	IDH1	0.561	1
IDH1	IRS4	0.561	1
MYST4	22q-Del	0.561	1
NUDT11	18q-Del	0.561	1
SMARCA4	Amp_13q34	0.561	1
18q-Del	Del_7p22.3	0.561	1
PIK3CA	Amp_11q24.1	0.562	1
PIK3R1	Amp_Xp11.22	0.562	1
PIK3R1	Del_Xq21.1	0.562	1
7q-Amp	18p-Del	0.562	1
ARID1A	9q-Del	0.563	1
FAM47C	TCF12	0.563	1
FAM47C	15q-Del	0.563	1
FAM47C	9q-Del	0.563	1
TCF12	Del_5q34	0.563	1
TP53	Del_9p21.3	0.563	1
14q-Del	Del_2q37.3	0.563	1
15q-Del	Amp_4q12	0.563	1
4p-Del	Amp_7p11.2	0.563	1
Amp_11q24.1	Del_19q13.42	0.563	1
DLX6	Del_13q14.2	0.565	1
ELF4	Del_13q14.2	0.565	1
KRT3	Del_13q14.2	0.565	1
NAP1L2	Del_13q14.2	0.565	1
PIK3CA	Del_22q13.31	0.565	1
PTPN11	14q-Del	0.565	1
RBPJ	14q-Del	0.565	1
SLC12A7	14q-Del	0.565	1
SMARCB1	Del_13q14.2	0.565	1
SRPX	Del_13q14.2	0.565	1
14q-Del	Amp_2p24.3	0.565	1
EGFR	GAGE2A	0.566	1
PIK3CA	Del_9p23	0.566	1
Amp_19p13.3	Del_6q26	0.566	1
ARID1A	Del_22q13.31	0.568	1
CUL4B	Amp_11q24.1	0.568	1
PDGFRA	18p-Del	0.568	1
PDGFRA	Amp_11q24.1	0.568	1
PRX	Amp_11q24.1	0.568	1
SETD2	Amp_11q24.1	0.568	1
STK19	Amp_11q24.1	0.568	1
TNRC18	18p-Del	0.568	1
7p-Amp	18p-Del	0.568	1
18p-Del	Amp_1q22	0.568	1
Amp_4q12	Del_18q23	0.568	1
IDH2	ZNF292	0.569	1
IDH2	12q-Del	0.569	1
IDH2	Del_3q13.31	0.569	1
ZNF292	Amp_17q25.1	0.569	1
12q-Del	Amp_17q25.1	0.569	1
Amp_17q25.1	Del_3q13.31	0.569	1
CUL4B	Del_1p32.3	0.57	1
Amp_1q22	Del_1p32.3	0.57	1
Amp_11q24.1	Del_10q26.3	0.57	1
TCF12	Del_6q26	0.571	1
9q-Del	Del_6q26	0.571	1
Amp_7q31.2	Del_Xq21.1	0.571	1
Amp_19p13.3	Del_13q14.2	0.571	1
EMG1	10p-Del	0.572	1
ENGASE	10p-Del	0.572	1
HTRA2	10p-Del	0.572	1
ROBO3	10p-Del	0.572	1
ZNF512B	10p-Del	0.572	1
CREBZF	Del_22q13.31	0.573	1
EGFR	ZBTB20	0.573	1
PTPN11	Del_18q23	0.573	1
R3HDM1	Del_22q13.31	0.573	1
RBPJ	Del_22q13.31	0.573	1
SLC12A7	Del_18q23	0.573	1
19p-Amp	Del_6p25.3	0.573	1
Amp_2p24.3	Del_22q13.31	0.573	1
ARID2	Amp_19p13.3	0.574	1
ATRX	G6PC	0.574	1
MYST4	Amp_19p13.3	0.574	1
18p-Del	Amp_7p11.2	0.574	1
Amp_19p13.3	Del_7p22.3	0.574	1
R3HDM1	Del_1p36.32	0.575	1
Amp_8q24.13	Del_18q23	0.575	1
18q-Del	9p-Del	0.576	1
Amp_12p13.32	Del_10q26.3	0.576	1
ZBTB20	Amp_Xp11.22	0.577	1
10p-Amp	Del_12q12	0.577	1
11q-Amp	Amp_1q32.1	0.578	1
ABCA7	10p-Amp	0.579	1
ABCA7	Del_12q12	0.579	1
C9orf79	10p-Amp	0.579	1
C9orf79	Del_12q12	0.579	1
PRX	Del_12q12	0.579	1
SETD2	10p-Amp	0.579	1
STK19	10p-Amp	0.579	1
STK19	Del_12q12	0.579	1
TNRC18	Del_12q12	0.579	1
10p-Amp	Amp_1q22	0.579	1
4p-Del	6q-Del	0.579	1
Amp_1q22	Del_12q12	0.579	1
PTPN11	Del_1p32.3	0.58	1
R3HDM1	Del_1p32.3	0.58	1
RET	Del_1p32.3	0.58	1
SLC12A7	Del_1p32.3	0.58	1
4q-Del	Amp_19p13.3	0.58	1
CIB1	9p-Del	0.581	1
DLX6	9p-Del	0.581	1
DLX6	Del_11p15.5	0.581	1
ELF4	9p-Del	0.581	1
ELF4	Del_11p15.5	0.581	1
KRT3	9p-Del	0.581	1
NAP1L2	Del_11p15.5	0.581	1
NIPBL	TCF12	0.581	1
SMARCB1	Del_11p15.5	0.581	1
CREBZF	11p-Del	0.582	1
CREBZF	Amp_10p15.3	0.582	1
NOTCH1	14q-Del	0.582	1
PIK3CA	PLCG1	0.582	1
PTPN11	11p-Del	0.582	1
PTPN11	Amp_10p15.3	0.582	1
R3HDM1	11p-Del	0.582	1
R3HDM1	Amp_10p15.3	0.582	1
RBPJ	11p-Del	0.582	1
RET	11p-Del	0.582	1
RET	Amp_10p15.3	0.582	1
SLC12A7	11p-Del	0.582	1
SLC12A7	Amp_10p15.3	0.582	1
TCF12	Del_11p15.1	0.582	1
10q-Del	11p-Del	0.582	1
15q-Del	Del_11p15.1	0.582	1
Amp_2p24.3	Amp_10p15.3	0.582	1
C14orf4	Del_9p23	0.584	1
MED9	Del_9p23	0.584	1
MYST4	9p-Del	0.584	1
MYST4	Del_11p15.5	0.584	1
TMEM216	Del_9p23	0.584	1
14q-Del	19q-Del	0.584	1
9p-Del	Amp_13q34	0.584	1
Del_7p22.3	Del_11p15.5	0.584	1
ARID1A	12q-Del	0.585	1
ARID1A	Del_3q13.31	0.585	1
FAM47C	12q-Del	0.585	1
FAM47C	Del_3q13.31	0.585	1
GAGE2A	NF1	0.585	1
GAGE2A	6q-Del	0.585	1
GAGE2A	Amp_12p13.32	0.585	1
PIK3CA	11p-Del	0.585	1
RET	Amp_7q32.3	0.585	1
SLC6A3	7q-Amp	0.585	1
ABCA7	19q-Del	0.586	1
CUL4B	19q-Del	0.586	1
PIK3CA	Del_12q12	0.586	1
PIK3R1	10p-Del	0.586	1
7q-Amp	15q-Del	0.586	1
ARID2	8q-Amp	0.587	1
ARID2	Del_3p21.31	0.587	1
ARID2	Del_5p15.33	0.587	1
DNMT3A	Amp_12q14.1	0.587	1
DNMT3A	Del_3p21.31	0.587	1
DNMT3A	Del_5p15.33	0.587	1
MYST4	Amp_12q14.1	0.587	1
MYST4	Del_3p21.31	0.587	1
NUDT11	Amp_12q14.1	0.587	1
NUDT11	Del_5p15.33	0.587	1
PIK3CA	Del_6q26	0.587	1
PTEN	Amp_13q34	0.587	1
PTEN	Del_7p22.3	0.587	1
Amp_12q14.1	Del_7p22.3	0.587	1
Del_5p15.33	Del_7p22.3	0.587	1
PIK3R1	19p-Amp	0.588	1
19p-Amp	4p-Del	0.588	1
4p-Del	Amp_3q26.33	0.588	1
Del_9p21.3	Del_12q12	0.589	1
C4BPA	Del_2q37.3	0.59	1
MYT1	Del_2q37.3	0.59	1
NEU2	Del_2q37.3	0.59	1
PLXNA3	4q-Del	0.59	1
PPL	Del_2q37.3	0.59	1
SLC6A3	4q-Del	0.59	1
ZMIZ1	4q-Del	0.59	1
MYT1	Del_9p21.3	0.591	1
RB1	Del_9p21.3	0.591	1
ZBTB20	7q-Amp	0.591	1
12q-Del	Del_9p23	0.591	1
ABCA7	22q-Del	0.592	1
CUL4B	22q-Del	0.592	1
PDGFRA	18q-Del	0.592	1
PDGFRA	22q-Del	0.592	1
SETD2	22q-Del	0.592	1
SLC6A3	Amp_7p11.2	0.592	1
SMARCA4	Amp_1q22	0.592	1
STK19	22q-Del	0.592	1
TNRC18	18q-Del	0.592	1
TNRC18	22q-Del	0.592	1
13q-Del	Amp_8q24.13	0.592	1
18q-Del	Amp_1q22	0.592	1
22q-Del	Amp_1q22	0.592	1
Amp_8q24.13	Del_6q22.31	0.592	1
FUBP1	TCF12	0.593	1
IDH2	Amp_Xp11.22	0.593	1
IDH2	Del_Xq21.1	0.593	1
NOTCH1	18p-Del	0.593	1
NOTCH1	Amp_11q24.1	0.593	1
R3HDM1	19q-Del	0.593	1
RET	19q-Del	0.593	1
SLC12A7	19q-Del	0.593	1
TCF12	13q-Del	0.593	1
TCF12	Del_6q22.31	0.593	1
ZBTB20	Amp_8q24.13	0.593	1
ZBTB20	Del_4q34.3	0.593	1
Amp_7q31.2	Del_6p25.3	0.593	1
Amp_17q25.1	Amp_Xp11.22	0.593	1
PIK3CA	Del_8q24.3	0.594	1
SMARCA4	Amp_7q32.3	0.594	1
7p-Amp	Del_2q37.3	0.595	1
DLX6	Del_1p36.32	0.596	1
KRT3	Del_1p36.32	0.596	1
SMARCB1	Del_1p36.32	0.596	1
10p-Amp	7q-Amp	0.596	1
NOTCH1	PLCG1	0.597	1
PDGFRA	Del_9p21.3	0.598	1
SETD2	Del_9p21.3	0.598	1
TNRC18	Del_9p21.3	0.598	1
11q-Amp	Del_8q24.3	0.598	1
18p-Del	Amp_19p13.3	0.598	1
KRAS	Del_9p21.3	0.599	1
C14orf4	Del_19q13.42	0.6	1
DLX6	Del_1p32.3	0.6	1
KRT3	Del_1p32.3	0.6	1
MED9	Del_19q13.42	0.6	1
SMARCB1	Del_1p32.3	0.6	1
TMEM216	Del_19q13.42	0.6	1
ZNF709	Del_19q13.42	0.6	1
MYST4	Del_6p25.3	0.601	1
NF1	7q-Amp	0.601	1
PTEN	4q-Del	0.601	1
SLC6A3	18p-Del	0.601	1
SLC6A3	Amp_11q24.1	0.601	1
ZMIZ1	Amp_11q24.1	0.601	1
4q-Del	Amp_12q14.1	0.601	1
ARID1A	7p-Amp	0.602	1
KRT3	7p-Amp	0.602	1
NAP1L2	7p-Amp	0.602	1
NF1	Del_1p32.3	0.602	1
NRAS	7p-Amp	0.602	1
ZBTB20	19p-Amp	0.602	1
ZBTB20	Amp_3q26.33	0.602	1
NIPBL	12q-Del	0.603	1
NIPBL	Del_3q13.31	0.603	1
ZBTB20	6q-Del	0.603	1
ZBTB20	Amp_12p13.32	0.603	1
Amp_1q32.1	Del_13q14.2	0.603	1
BRAF	Del_6q26	0.604	1
C9orf79	Amp_19p13.3	0.604	1
EMG1	Del_6q26	0.604	1
ENGASE	Del_6q26	0.604	1
PDGFRA	Amp_19p13.3	0.604	1
ATRX	Del_4q34.3	0.605	1
MED9	7q-Amp	0.605	1
PIK3R1	Del_10q26.3	0.605	1
ZMIZ1	Del_14q24.3	0.605	1
ZNF709	7q-Amp	0.605	1
12q-Del	Del_9p21.3	0.606	1
10p-Amp	Amp_7p11.2	0.607	1
7q-Amp	Del_18q23	0.607	1
7q-Amp	Del_22q13.31	0.607	1
12q-Del	Del_6q26	0.607	1
CREBZF	EGFR	0.608	1
EGFR	PTPN11	0.608	1
EGFR	Amp_2p24.3	0.608	1
ARID1A	Amp_Xp11.22	0.609	1
ARID1A	Del_Xq21.1	0.609	1
CUL4B	Del_13q14.2	0.609	1
FAM47C	Amp_Xp11.22	0.609	1
FAM47C	Del_Xq21.1	0.609	1
MED9	Amp_7p11.2	0.609	1
NIPBL	11p-Del	0.609	1
PRX	Del_13q14.2	0.609	1
SMOC1	Amp_7p11.2	0.609	1
STK19	Del_13q14.2	0.609	1
ZNF709	Amp_7p11.2	0.609	1
Amp_1q22	Del_13q14.2	0.609	1
DLX6	19q-Del	0.61	1
KRT3	19q-Del	0.61	1
SMARCB1	19q-Del	0.61	1
BRAF	Del_11p15.1	0.611	1
EMG1	Del_11p15.1	0.611	1
PIK3CA	SMARCA4	0.611	1
PIK3CA	22q-Del	0.611	1
ROBO3	Del_11p15.1	0.611	1
ZNF512B	Del_11p15.1	0.611	1
6q-Del	Amp_7q31.2	0.611	1
ANKRD36	Del_10q26.3	0.612	1
PLXNA3	10p-Amp	0.612	1
PLXNA3	Del_12q12	0.612	1
R3HDM1	Del_10q26.3	0.612	1
RBPJ	Del_10q26.3	0.612	1
SLC6A3	Del_12q12	0.612	1
ZMIZ1	10p-Amp	0.612	1
ZMIZ1	Del_12q12	0.612	1
C4BPA	14q-Del	0.613	1
DLC1	14q-Del	0.613	1
G6PC	14q-Del	0.613	1
MYT1	14q-Del	0.613	1
NEU2	14q-Del	0.613	1
PPL	14q-Del	0.613	1
ARID2	4p-Del	0.614	1
DNMT3A	4p-Del	0.614	1
MYST4	4p-Del	0.614	1
NUDT11	4p-Del	0.614	1
PIK3R1	Del_7p22.3	0.614	1
4p-Del	Amp_13q34	0.614	1
SMARCA4	18q-Del	0.615	1
NUDT11	7p-Amp	0.616	1
10p-Amp	Amp_19p13.3	0.616	1
19p-Amp	Del_4q34.3	0.616	1
Amp_3q26.33	Amp_8q24.13	0.616	1
Amp_3q26.33	Del_4q34.3	0.616	1
Amp_19p13.3	Del_12q12	0.616	1
ABCA7	8q-Amp	0.617	1
ABCA7	Del_3p21.31	0.617	1
BRAF	13q-Del	0.617	1
BRAF	Del_6q22.31	0.617	1
C9orf79	8q-Amp	0.617	1
C9orf79	Amp_12q14.1	0.617	1
C9orf79	Del_3p21.31	0.617	1
CUL4B	8q-Amp	0.617	1
CUL4B	Amp_12q14.1	0.617	1
CUL4B	Del_3p21.31	0.617	1
EMG1	Del_6q22.31	0.617	1
ENGASE	13q-Del	0.617	1
FUBP1	HTRA2	0.617	1
FUBP1	Xq-Del	0.617	1
HTRA2	13q-Del	0.617	1
IDH2	19p-Amp	0.617	1
IDH2	Amp_3q26.33	0.617	1
NOTCH1	11q-Amp	0.617	1
NOTCH1	Del_12q12	0.617	1
PDGFRA	8q-Amp	0.617	1
PRX	Amp_12q14.1	0.617	1
PTEN	Amp_1q22	0.617	1
ROBO3	13q-Del	0.617	1
SETD2	8q-Amp	0.617	1
SETD2	Del_3p21.31	0.617	1
SETD2	Del_5p15.33	0.617	1
STK19	Del_5p15.33	0.617	1
TNRC18	8q-Amp	0.617	1
TNRC18	Amp_12q14.1	0.617	1
TNRC18	Del_3p21.31	0.617	1
19p-Amp	Amp_17q25.1	0.617	1
13q-Del	Xq-Del	0.617	1
Amp_1q22	Del_3p21.31	0.617	1
Amp_1q22	Del_5p15.33	0.617	1
PTEN	Amp_11q24.1	0.618	1
TCF12	Del_8q24.3	0.618	1
TMEM216	Del_14q24.3	0.618	1
ZNF709	Del_14q24.3	0.618	1
11q-Amp	9q-Del	0.618	1
15q-Del	Del_8q24.3	0.618	1
18p-Del	Del_3p21.31	0.618	1
18p-Del	Del_5p15.33	0.618	1
Amp_11q24.1	Amp_12q14.1	0.618	1
Amp_11q24.1	Del_3p21.31	0.618	1
Amp_11q24.1	Del_5p15.33	0.618	1
ZNF292	Amp_1q32.1	0.62	1
Amp_1q32.1	Del_3q13.31	0.62	1
Amp_8q24.13	Del_9p21.3	0.62	1
Amp_12q14.1	Del_6q22.31	0.62	1
C4BPA	Del_18q23	0.621	1
C4BPA	Del_22q13.31	0.621	1
DLC1	Del_18q23	0.621	1
DLC1	Del_22q13.31	0.621	1
G6PC	Del_18q23	0.621	1
G6PC	Del_22q13.31	0.621	1
MYT1	Del_18q23	0.621	1
NEU2	Del_18q23	0.621	1
NEU2	Del_22q13.31	0.621	1
NOTCH1	11p-Del	0.621	1
PLCG1	Del_18q23	0.621	1
PPL	Del_18q23	0.621	1
PPL	Del_22q13.31	0.621	1
TRERF1	Del_22q13.31	0.621	1
ZBTB20	Del_14q24.3	0.621	1
Amp_7p11.2	Del_18q23	0.621	1
4q-Del	Del_6p25.3	0.622	1
CIB1	10q-Del	0.623	1
CIC	KRAS	0.623	1
DLX6	10q-Del	0.623	1
ELF4	10q-Del	0.623	1
NAP1L2	10q-Del	0.623	1
NRAS	10q-Del	0.623	1
PIK3CA	13q-Del	0.623	1
PIK3CA	Del_6q22.31	0.623	1
SMARCB1	10q-Del	0.623	1
4p-Del	Del_9p21.3	0.623	1
IDH2	Amp_8q24.13	0.624	1
PLXNA3	22q-Del	0.624	1
SLC6A3	18q-Del	0.624	1
SLC6A3	22q-Del	0.624	1
TP53	Amp_12q14.1	0.624	1
ZMIZ1	22q-Del	0.624	1
ENGASE	Del_19q13.42	0.625	1
HTRA2	Del_19q13.42	0.625	1
NIPBL	Amp_Xp11.22	0.625	1
NIPBL	Del_Xq21.1	0.625	1
ANKRD36	NF1	0.626	1
CREBZF	NF1	0.626	1
CREBZF	Amp_12p13.32	0.626	1
GAGE2A	4q-Del	0.626	1
IRS4	4q-Del	0.626	1
NF1	RBPJ	0.626	1
NF1	Amp_2p24.3	0.626	1
PIK3CA	9q-Del	0.626	1
PTPN11	6q-Del	0.626	1
PTPN11	Amp_12p13.32	0.626	1
R3HDM1	Amp_12p13.32	0.626	1
RBPJ	6q-Del	0.626	1
RBPJ	Amp_12p13.32	0.626	1
RET	6q-Del	0.626	1
RET	Amp_12p13.32	0.626	1
SLC12A7	Amp_12p13.32	0.626	1
7p-Amp	18q-Del	0.626	1
4q-Del	Xp-Del	0.626	1
IDH2	NF1	0.627	1
NF1	Amp_17q25.1	0.627	1
ZNF292	13q-Del	0.627	1
12q-Del	13q-Del	0.627	1
ANKRD36	Amp_7q31.2	0.628	1
ARID2	Amp_7q32.3	0.628	1
DNMT3A	Amp_7q32.3	0.628	1
NUDT11	Amp_7q32.3	0.628	1
R3HDM1	Amp_7q31.2	0.628	1
RET	Amp_7q31.2	0.628	1
ABCA7	Del_6p25.3	0.629	1
C4BPA	11p-Del	0.629	1
C4BPA	Amp_10p15.3	0.629	1
C9orf79	Del_6p25.3	0.629	1
CIC	MYT1	0.629	1
CIC	NEU2	0.629	1
CIC	RB1	0.629	1
CIC	TRERF1	0.629	1
CUL4B	1p-Del	0.629	1
DLC1	11p-Del	0.629	1
DLC1	Amp_10p15.3	0.629	1
DLX6	Amp_8q24.13	0.629	1
DLX6	Del_4q34.3	0.629	1
ELF4	Amp_8q24.13	0.629	1
ELF4	Del_4q34.3	0.629	1
NAP1L2	Amp_8q24.13	0.629	1
NAP1L2	Del_4q34.3	0.629	1
NEU2	11p-Del	0.629	1
NEU2	Amp_10p15.3	0.629	1
NRAS	Amp_8q24.13	0.629	1
PLCG1	11p-Del	0.629	1
PLCG1	Amp_10p15.3	0.629	1
PPL	11p-Del	0.629	1
PPL	Amp_10p15.3	0.629	1
R3HDM1	1p-Del	0.629	1
RB1	11p-Del	0.629	1
RB1	Amp_10p15.3	0.629	1
RET	1p-Del	0.629	1
SETD2	Del_6p25.3	0.629	1
SLC12A7	1p-Del	0.629	1
SMARCA4	7q-Amp	0.629	1
SMARCB1	Amp_8q24.13	0.629	1
SRPX	Amp_8q24.13	0.629	1
SRPX	Del_4q34.3	0.629	1
STK19	Del_6p25.3	0.629	1
TNRC18	Del_6p25.3	0.629	1
TRERF1	11p-Del	0.629	1
TRERF1	Amp_10p15.3	0.629	1
ZBTB20	Amp_13q34	0.629	1
ZBTB20	Del_7p22.3	0.629	1
7q-Amp	18q-Del	0.629	1
IDH1	SLC6A3	0.63	1
IDH1	ZMIZ1	0.63	1
Del_12q12	Del_14q24.3	0.63	1
ZNF292	7q-Amp	0.631	1
ABCA7	9p-Del	0.632	1
C9orf79	9p-Del	0.632	1
C9orf79	Del_11p15.5	0.632	1
CUL4B	9p-Del	0.632	1
SETD2	Del_11p15.5	0.632	1
TNRC18	9p-Del	0.632	1
ARID1A	19p-Amp	0.633	1
ARID1A	Amp_3q26.33	0.633	1
FAM47C	19p-Amp	0.633	1
FAM47C	Amp_3q26.33	0.633	1
19p-Amp	Amp_4q12	0.633	1
19p-Amp	Del_5q34	0.633	1
18q-Del	Amp_19p13.3	0.634	1
Amp_11q24.1	Del_4q34.3	0.634	1
CIB1	IDH1	0.635	1
ELF4	IDH1	0.635	1
IDH1	KRT3	0.635	1
IDH1	NAP1L2	0.635	1
IDH1	SMARCB1	0.635	1
7q-Amp	Amp_10p15.3	0.635	1
GAGE2A	18p-Del	0.636	1
GAGE2A	Amp_11q24.1	0.636	1
IRS4	Amp_11q24.1	0.636	1
PLXNA3	Amp_19p13.3	0.636	1
PTEN	10p-Amp	0.636	1
SLC6A3	Amp_19p13.3	0.636	1
ZMIZ1	Amp_19p13.3	0.636	1
10p-Amp	Amp_12q14.1	0.636	1
8q-Amp	Del_12q12	0.636	1
EMG1	PIK3CA	0.637	1
HTRA2	PIK3CA	0.637	1
PIK3CA	ROBO3	0.637	1
PIK3CA	Xq-Del	0.637	1
TCF12	Del_2q37.3	0.637	1
11p-Del	Amp_1q32.1	0.637	1
15q-Del	Del_2q37.3	0.637	1
Amp_7q32.3	Del_6q26	0.637	1
DLX6	1p-Del	0.638	1
IDH2	Amp_7p11.2	0.638	1
KRT3	1p-Del	0.638	1
PIK3CA	7q-Amp	0.638	1
SMARCB1	1p-Del	0.638	1
ZNF292	11q-Amp	0.638	1
ZNF292	Del_8q24.3	0.638	1
11q-Amp	12q-Del	0.638	1
12q-Del	Del_8q24.3	0.638	1
Del_11p15.5	Del_14q24.3	0.638	1
Amp_12p13.32	Del_14q24.3	0.639	1
Del_1p36.32	Del_14q24.3	0.639	1
CIB1	10p-Del	0.64	1
DLX6	10p-Del	0.64	1
ELF4	10p-Del	0.64	1
NAP1L2	10p-Del	0.64	1
NRAS	10p-Del	0.64	1
SMARCA4	Amp_7p11.2	0.64	1
SMARCB1	10p-Del	0.64	1
ZNF292	Amp_7p11.2	0.64	1
18q-Del	Amp_7p11.2	0.64	1
FAM47C	IDH1	0.641	1
11q-Amp	14q-Del	0.641	1
Amp_1q32.1	Amp_Xp11.22	0.642	1
Amp_1q32.1	Del_Xq21.1	0.642	1
Del_6q22.31	Del_19q13.42	0.642	1
ARID2	Amp_17q25.1	0.643	1
ARID2	Del_3q29	0.643	1
C9orf79	4p-Del	0.643	1
CUL4B	4p-Del	0.643	1
DNMT3A	Amp_17q25.1	0.643	1
DNMT3A	Del_3q29	0.643	1
IDH2	MYST4	0.643	1
IDH2	NUDT11	0.643	1
IDH2	Amp_13q34	0.643	1
IDH2	Del_7p22.3	0.643	1
MYST4	Amp_17q25.1	0.643	1
MYST4	Del_3q29	0.643	1
NF1	13q-Del	0.643	1
NUDT11	Amp_17q25.1	0.643	1
PIK3R1	Amp_1q22	0.643	1
PRX	4p-Del	0.643	1
SETD2	4p-Del	0.643	1
STK19	4p-Del	0.643	1
4p-Del	Amp_1q22	0.643	1
Amp_13q34	Amp_17q25.1	0.643	1
BRAF	Del_2q37.3	0.644	1
EMG1	Del_2q37.3	0.644	1
ENGASE	Del_2q37.3	0.644	1
ROBO3	Del_2q37.3	0.644	1
KRAS	Amp_7q32.3	0.645	1
C9orf79	CIC	0.646	1
CIC	CUL4B	0.646	1
CIC	PDGFRA	0.646	1
CIC	TNRC18	0.646	1
7q-Amp	Del_4q34.3	0.646	1
13q-Del	Del_6p25.3	0.646	1
GAGE2A	10p-Amp	0.647	1
IRS4	10p-Amp	0.647	1
PLXNA3	8q-Amp	0.647	1
PLXNA3	Amp_12q14.1	0.647	1
PLXNA3	Del_3p21.31	0.647	1
PLXNA3	Del_5p15.33	0.647	1
SLC6A3	8q-Amp	0.647	1
SLC6A3	Amp_12q14.1	0.647	1
SLC6A3	Del_5p15.33	0.647	1
ZMIZ1	Amp_12q14.1	0.647	1
ZMIZ1	Del_3p21.31	0.647	1
10p-Amp	Xp-Del	0.647	1
Xp-Del	Del_12q12	0.647	1
ATRX	Amp_17q25.1	0.648	1
NIPBL	Amp_3q26.33	0.648	1
NOTCH1	9q-Del	0.648	1
PIK3R1	Del_6q26	0.648	1
ARID2	10q-Del	0.65	1
MYST4	10q-Del	0.65	1
ARID1A	6q-Del	0.651	1
ARID1A	Amp_12p13.32	0.651	1
GAGE2A	Amp_7p11.2	0.651	1
HTRA2	NOTCH1	0.651	1
IRS4	Amp_7p11.2	0.651	1
NF1	Del_5q34	0.651	1
NOTCH1	Xq-Del	0.651	1
PDGFRA	TP53	0.651	1
Xp-Del	Amp_7p11.2	0.651	1
C14orf4	Del_13q14.2	0.652	1
ZNF709	Del_13q14.2	0.652	1
Del_11p15.1	Del_Xq21.1	0.652	1
SMARCA4	Amp_12q14.1	0.653	1
11p-Del	9p-Del	0.653	1
18q-Del	Amp_12q14.1	0.653	1
Del_8q24.3	Del_22q13.31	0.653	1
ARID1A	Del_4q34.3	0.656	1
SLC6A3	Del_1p36.32	0.656	1
TCF12	ZNF292	0.656	1
TCF12	12q-Del	0.656	1
TCF12	Del_3q13.31	0.656	1
ZBTB20	Amp_1q22	0.656	1
ZNF292	15q-Del	0.656	1
12q-Del	9q-Del	0.656	1
15q-Del	Del_3q13.31	0.656	1
Amp_10p15.3	Amp_11q24.1	0.656	1
Del_3q13.31	Del_14q24.3	0.656	1
ARID1A	Amp_13q34	0.657	1
DNMT3A	Del_5q34	0.657	1
FAM47C	Amp_13q34	0.657	1
FAM47C	Del_7p22.3	0.657	1
MYST4	Del_5q34	0.657	1
NUDT11	Del_5q34	0.657	1
Amp_4q12	Del_7p22.3	0.657	1
ARID2	Amp_8q24.13	0.658	1
ARID2	Del_4q34.3	0.658	1
GAGE2A	SMARCA4	0.658	1
GAGE2A	18q-Del	0.658	1
MYST4	Del_4q34.3	0.658	1
SMARCA4	Xp-Del	0.658	1
Amp_13q34	Del_4q34.3	0.658	1
Amp_17q25.1	Del_14q24.3	0.658	1
Del_4q34.3	Del_7p22.3	0.658	1
PIK3CA	Del_3q13.31	0.659	1
PIK3R1	Amp_11q24.1	0.659	1
11q-Amp	Del_Xq21.1	0.659	1
4p-Del	Amp_11q24.1	0.659	1
Amp_Xp11.22	Del_8q24.3	0.659	1
ARID2	Del_10q26.3	0.66	1
KRAS	Del_10q26.3	0.66	1
PLXNA3	Del_6p25.3	0.66	1
PLXNA3	Del_13q14.2	0.66	1
SLC6A3	Del_6p25.3	0.66	1
PIK3R1	Del_11p15.1	0.661	1
SLC6A3	Del_1p32.3	0.661	1
4p-Del	Del_11p15.1	0.661	1
PDGFRA	7p-Amp	0.662	1
SMARCA4	Del_14q24.3	0.662	1
7p-Amp	Amp_1q22	0.662	1
GAGE2A	Del_14q24.3	0.663	1
PPL	Amp_7q32.3	0.663	1
TRERF1	Amp_7q32.3	0.663	1
ANKRD36	4q-Del	0.664	1
PTPN11	4q-Del	0.664	1
R3HDM1	4q-Del	0.664	1
4q-Del	Amp_2p24.3	0.664	1
BRAF	14q-Del	0.665	1
C14orf4	9p-Del	0.665	1
C14orf4	Del_11p15.5	0.665	1
EMG1	14q-Del	0.665	1
HTRA2	14q-Del	0.665	1
MED9	9p-Del	0.665	1
MED9	Del_11p15.5	0.665	1
ROBO3	14q-Del	0.665	1
SMOC1	9p-Del	0.665	1
SMOC1	Del_11p15.5	0.665	1
TMEM216	Del_11p15.5	0.665	1
ZNF512B	14q-Del	0.665	1
ZNF709	9p-Del	0.665	1
11q-Amp	Amp_10p15.3	0.665	1
Del_9p21.3	Del_Xq21.1	0.665	1
7q-Amp	Amp_4q12	0.667	1
ATRX	MED9	0.668	1
ATRX	ZNF709	0.668	1
CIB1	Del_6q26	0.668	1
DLX6	Del_6q26	0.668	1
ELF4	Del_6q26	0.668	1
NAP1L2	Del_6q26	0.668	1
NRAS	Del_6q26	0.668	1
PLXNA3	Del_9p21.3	0.668	1
SMARCB1	Del_6q26	0.668	1
ABCA7	IDH2	0.669	1
ABCA7	Amp_17q25.1	0.669	1
ATRX	Amp_1q22	0.669	1
C9orf79	Amp_17q25.1	0.669	1
C9orf79	Del_3q29	0.669	1
CUL4B	IDH2	0.669	1
CUL4B	Del_3q29	0.669	1
IDH2	PDGFRA	0.669	1
IDH2	PRX	0.669	1
IDH2	SETD2	0.669	1
IDH2	Amp_1q22	0.669	1
IRS4	Amp_19p13.3	0.669	1
PDGFRA	Amp_17q25.1	0.669	1
PRX	Amp_17q25.1	0.669	1
SETD2	Amp_17q25.1	0.669	1
SETD2	Del_3q29	0.669	1
STK19	Del_3q29	0.669	1
TNRC18	Amp_17q25.1	0.669	1
TNRC18	Del_3q29	0.669	1
Xp-Del	Amp_19p13.3	0.669	1
Amp_1q22	Amp_17q25.1	0.669	1
C4BPA	6q-Del	0.67	1
C4BPA	Amp_12p13.32	0.67	1
DLC1	6q-Del	0.67	1
G6PC	6q-Del	0.67	1
G6PC	Amp_12p13.32	0.67	1
KRAS	Amp_7q31.2	0.67	1
MYT1	6q-Del	0.67	1
NEU2	6q-Del	0.67	1
NF1	PLCG1	0.67	1
PLCG1	Amp_12p13.32	0.67	1
PPL	6q-Del	0.67	1
PPL	Amp_12p13.32	0.67	1
RB1	Amp_12p13.32	0.67	1
SMARCA4	14q-Del	0.67	1
TRERF1	6q-Del	0.67	1
TRERF1	Amp_12p13.32	0.67	1
11q-Amp	9p-Del	0.67	1
TCF12	14q-Del	0.671	1
BRAF	Del_18q23	0.672	1
EMG1	Del_18q23	0.672	1
EMG1	Del_22q13.31	0.672	1
ENGASE	Del_18q23	0.672	1
ENGASE	Del_22q13.31	0.672	1
HTRA2	Del_18q23	0.672	1
NIPBL	Del_7p22.3	0.672	1
PLXNA3	4p-Del	0.672	1
ROBO3	Del_22q13.31	0.672	1
SLC6A3	4p-Del	0.672	1
ZMIZ1	4p-Del	0.672	1
ZNF512B	Del_18q23	0.672	1
ZNF512B	Del_22q13.31	0.672	1
Xq-Del	Del_18q23	0.672	1
ANKRD36	18p-Del	0.673	1
ANKRD36	Amp_11q24.1	0.673	1
CREBZF	Amp_11q24.1	0.673	1
PIK3R1	Del_6q22.31	0.673	1
PTPN11	18p-Del	0.673	1
PTPN11	Amp_11q24.1	0.673	1
R3HDM1	Amp_11q24.1	0.673	1
RBPJ	Amp_11q24.1	0.673	1
RET	Amp_11q24.1	0.673	1
SLC12A7	18p-Del	0.673	1
18p-Del	Amp_2p24.3	0.673	1
DLX6	Del_11p15.1	0.674	1
ELF4	Del_11p15.1	0.674	1
NAP1L2	Del_11p15.1	0.674	1
SMARCA4	Amp_7q31.2	0.674	1
SMARCB1	Del_11p15.1	0.674	1
Del_2q37.3	Del_5p15.33	0.674	1
ARID2	10p-Del	0.675	1
MYST4	10p-Del	0.675	1
SLC6A3	19q-Del	0.675	1
ZNF292	12q-Del	0.675	1
Amp_10p15.3	Del_18q23	0.675	1
FAM47C	Amp_7p11.2	0.676	1
PIK3R1	Del_12q12	0.676	1
10p-Amp	4p-Del	0.676	1
4p-Del	Del_12q12	0.676	1
C4BPA	TP53	0.677	1
DLC1	TP53	0.677	1
G6PC	TP53	0.677	1
TCF12	Amp_Xp11.22	0.677	1
TCF12	Del_Xq21.1	0.677	1
TP53	Amp_7q31.2	0.677	1
15q-Del	Amp_Xp11.22	0.677	1
15q-Del	Del_Xq21.1	0.677	1
9q-Del	Amp_Xp11.22	0.677	1
NUDT11	Del_19q13.42	0.678	1
PTPN11	Del_9p23	0.678	1
R3HDM1	Del_9p23	0.678	1
RET	Del_9p23	0.678	1
19p-Amp	Del_6q26	0.679	1
ARID2	Amp_7q31.2	0.68	1
BRAF	11p-Del	0.68	1
BRAF	Amp_10p15.3	0.68	1
CIB1	FUBP1	0.68	1
CIB1	13q-Del	0.68	1
CIB1	Del_6q22.31	0.68	1
DLX6	13q-Del	0.68	1
DLX6	Del_6q22.31	0.68	1
ELF4	13q-Del	0.68	1
ELF4	Del_6q22.31	0.68	1
EMG1	11p-Del	0.68	1
EMG1	Amp_10p15.3	0.68	1
GAGE2A	PTEN	0.68	1
GAGE2A	8q-Amp	0.68	1
GAGE2A	Amp_12q14.1	0.68	1
GAGE2A	Del_3p21.31	0.68	1
GAGE2A	Del_5p15.33	0.68	1
HTRA2	Amp_10p15.3	0.68	1
IRS4	8q-Amp	0.68	1
IRS4	Amp_12q14.1	0.68	1
KRT3	13q-Del	0.68	1
KRT3	Del_6q22.31	0.68	1
NAP1L2	13q-Del	0.68	1
NAP1L2	Del_6q22.31	0.68	1
NRAS	Del_6q22.31	0.68	1
NUDT11	Amp_7q31.2	0.68	1
ROBO3	11p-Del	0.68	1
SMARCB1	13q-Del	0.68	1
SMARCB1	Del_6q22.31	0.68	1
SRPX	13q-Del	0.68	1
ZBTB20	Amp_11q24.1	0.68	1
ZNF512B	11p-Del	0.68	1
ZNF512B	Amp_10p15.3	0.68	1
8q-Amp	Xp-Del	0.68	1
Xp-Del	Del_5p15.33	0.68	1
PLXNA3	9p-Del	0.681	1
SLC6A3	Del_11p15.5	0.681	1
TCF12	Del_13q14.2	0.681	1
ZMIZ1	Del_11p15.5	0.681	1
11q-Amp	19p-Amp	0.681	1
11q-Amp	Amp_3q26.33	0.681	1
19p-Amp	Del_8q24.3	0.681	1
Amp_7p11.2	Del_6q26	0.681	1
TCF12	Del_18q23	0.682	1
TCF12	Del_22q13.31	0.682	1
TP53	Del_22q13.31	0.682	1
15q-Del	Del_22q13.31	0.682	1
ABCA7	Amp_4q12	0.683	1
ABCA7	Del_5q34	0.683	1
ANKRD36	Del_12q12	0.683	1
ARID1A	Amp_1q22	0.683	1
C9orf79	Amp_4q12	0.683	1
C9orf79	Del_5q34	0.683	1
CREBZF	10p-Amp	0.683	1
CREBZF	Del_12q12	0.683	1
CUL4B	Amp_4q12	0.683	1
CUL4B	Del_5q34	0.683	1
EMG1	Del_9p21.3	0.683	1
FAM47C	Amp_1q22	0.683	1
MED9	7p-Amp	0.683	1
PRX	Del_5q34	0.683	1
PTPN11	10p-Amp	0.683	1
PTPN11	Del_12q12	0.683	1
R3HDM1	10p-Amp	0.683	1
R3HDM1	Del_12q12	0.683	1
RBPJ	Del_12q12	0.683	1
RET	10p-Amp	0.683	1
RET	Del_12q12	0.683	1
ROBO3	Del_9p21.3	0.683	1
SLC12A7	10p-Amp	0.683	1
SLC12A7	Del_12q12	0.683	1
SMOC1	7p-Amp	0.683	1
STK19	Amp_4q12	0.683	1
STK19	Del_5q34	0.683	1
TNRC18	Amp_4q12	0.683	1
ZNF512B	Del_9p21.3	0.683	1
ZNF709	7p-Amp	0.683	1
10p-Amp	Amp_2p24.3	0.683	1
Amp_1q22	Amp_4q12	0.683	1
Amp_1q22	Del_5q34	0.683	1
IDH1	Amp_17q25.1	0.684	1
IDH1	Del_3q29	0.684	1
18q-Del	Del_22q13.31	0.684	1
22q-Del	Del_18q23	0.684	1
G6PC	Del_1p36.32	0.685	1
PPL	Del_1p36.32	0.685	1
RB1	Del_1p36.32	0.685	1
4q-Del	Amp_17q25.1	0.686	1
6q-Del	Amp_7q32.3	0.686	1
PPL	Del_10q26.3	0.687	1
ARID2	Amp_1q32.1	0.688	1
DNMT3A	Amp_1q32.1	0.688	1
FAM47C	Amp_7q32.3	0.688	1
MYST4	Amp_1q32.1	0.688	1
NOTCH1	PTEN	0.688	1
NOTCH1	Del_3p21.31	0.688	1
NUDT11	Amp_1q32.1	0.688	1
SETD2	Amp_7q32.3	0.688	1
TNRC18	Amp_7q32.3	0.688	1
Amp_1q32.1	Del_7p22.3	0.688	1
G6PC	Del_1p32.3	0.689	1
NOTCH1	7q-Amp	0.689	1
PPL	Del_1p32.3	0.689	1
PTEN	Amp_12q14.1	0.689	1
PTEN	Del_3p21.31	0.689	1
PTEN	Del_5p15.33	0.689	1
8q-Amp	Amp_12q14.1	0.689	1
Amp_12q14.1	Del_3p21.31	0.689	1
PIK3R1	SMARCA4	0.692	1
PIK3R1	22q-Del	0.692	1
22q-Del	4p-Del	0.692	1
ABCA7	10q-Del	0.693	1
ANKRD36	18q-Del	0.693	1
CREBZF	SMARCA4	0.693	1
CREBZF	22q-Del	0.693	1
PDGFRA	10q-Del	0.693	1
PTPN11	SMARCA4	0.693	1
PTPN11	18q-Del	0.693	1
R3HDM1	22q-Del	0.693	1
RBPJ	SMARCA4	0.693	1
RBPJ	22q-Del	0.693	1
SETD2	10q-Del	0.693	1
SLC12A7	18q-Del	0.693	1
SMARCA4	Amp_2p24.3	0.693	1
TCF12	11p-Del	0.693	1
TCF12	Amp_10p15.3	0.693	1
TNRC18	10q-Del	0.693	1
10q-Del	Amp_1q22	0.693	1
11p-Del	9q-Del	0.693	1
18q-Del	Amp_2p24.3	0.693	1
22q-Del	Amp_2p24.3	0.693	1
9q-Del	Amp_10p15.3	0.693	1
Del_4q34.3	Del_14q24.3	0.694	1
Del_5q34	Del_14q24.3	0.694	1
ZNF292	Del_Xq21.1	0.695	1
12q-Del	Del_Xq21.1	0.695	1
Amp_Xp11.22	Del_3q13.31	0.695	1
IDH2	PLXNA3	0.697	1
IDH2	SLC6A3	0.697	1
IDH2	ZMIZ1	0.697	1
NIPBL	Amp_1q22	0.697	1
NOTCH1	Del_4q34.3	0.697	1
PLXNA3	Amp_17q25.1	0.697	1
PLXNA3	Del_3q29	0.697	1
SLC6A3	Amp_17q25.1	0.697	1
SLC6A3	Del_3q29	0.697	1
ZMIZ1	Amp_17q25.1	0.697	1
ZMIZ1	Del_3q29	0.697	1
19q-Del	Del_14q24.3	0.697	1
CIB1	PIK3CA	0.698	1
KRT3	PIK3CA	0.698	1
NAP1L2	PIK3CA	0.698	1
NRAS	PIK3CA	0.698	1
TCF12	19p-Amp	0.698	1
TCF12	Amp_3q26.33	0.698	1
9q-Del	Amp_3q26.33	0.698	1
KRAS	Del_9p23	0.699	1
G6PC	19q-Del	0.7	1
NEU2	19q-Del	0.7	1
PIK3R1	9p-Del	0.7	1
PIK3R1	Del_11p15.5	0.7	1
4p-Del	Del_11p15.5	0.7	1
6q-Del	Amp_1q32.1	0.7	1
Amp_1q32.1	Amp_12p13.32	0.7	1
ABCA7	Amp_8q24.13	0.701	1
C4BPA	Amp_7q31.2	0.701	1
C9orf79	Del_4q34.3	0.701	1
EGFR	EMG1	0.701	1
EGFR	HTRA2	0.701	1
EGFR	ROBO3	0.701	1
FUBP1	14q-Del	0.701	1
PPL	Amp_7q31.2	0.701	1
PRX	Amp_8q24.13	0.701	1
PRX	Del_4q34.3	0.701	1
STK19	Amp_8q24.13	0.701	1
TNRC18	Del_4q34.3	0.701	1
12q-Del	14q-Del	0.701	1
Amp_1q22	Amp_8q24.13	0.701	1
C14orf4	10q-Del	0.702	1
GAGE2A	4p-Del	0.702	1
IRS4	4p-Del	0.702	1
PIK3R1	Xp-Del	0.702	1
SMOC1	10q-Del	0.702	1
TMEM216	10q-Del	0.702	1
ZNF709	10q-Del	0.702	1
4p-Del	Xp-Del	0.702	1
Amp_Xp11.22	Del_2q37.3	0.702	1
ANKRD36	Amp_19p13.3	0.703	1
ARID2	11q-Amp	0.703	1
ARID2	Del_8q24.3	0.703	1
CREBZF	Amp_19p13.3	0.703	1
EGFR	18p-Del	0.703	1
MYST4	Del_8q24.3	0.703	1
NUDT11	11q-Amp	0.703	1
NUDT11	Del_8q24.3	0.703	1
PTPN11	Amp_19p13.3	0.703	1
R3HDM1	Amp_19p13.3	0.703	1
RBPJ	Amp_19p13.3	0.703	1
RET	Amp_19p13.3	0.703	1
Amp_2p24.3	Amp_19p13.3	0.703	1
Amp_13q34	Del_8q24.3	0.703	1
Amp_17q25.1	Del_6q26	0.703	1
Del_3q29	Del_6q26	0.703	1
C4BPA	4q-Del	0.704	1
CIB1	Del_2q37.3	0.704	1
DLC1	4q-Del	0.704	1
DLX6	Del_2q37.3	0.704	1
ELF4	TP53	0.704	1
ELF4	Del_2q37.3	0.704	1
G6PC	4q-Del	0.704	1
KRT3	TP53	0.704	1
NAP1L2	TP53	0.704	1
NAP1L2	Del_2q37.3	0.704	1
NEU2	4q-Del	0.704	1
NRAS	Del_2q37.3	0.704	1
PLCG1	4q-Del	0.704	1
PPL	4q-Del	0.704	1
RB1	4q-Del	0.704	1
SMARCB1	Del_2q37.3	0.704	1
SRPX	Del_2q37.3	0.704	1
TRERF1	4q-Del	0.704	1
NIPBL	7q-Amp	0.705	1
Del_2q37.3	Del_14q24.3	0.705	1
ANKRD36	7q-Amp	0.706	1
C14orf4	Amp_8q24.13	0.706	1
C14orf4	Del_4q34.3	0.706	1
MED9	Amp_8q24.13	0.706	1
MED9	Del_4q34.3	0.706	1
R3HDM1	7q-Amp	0.706	1
RET	7q-Amp	0.706	1
SMOC1	Del_4q34.3	0.706	1
ZNF709	Amp_8q24.13	0.706	1
ZNF709	Del_4q34.3	0.706	1
11q-Amp	7p-Amp	0.706	1
Amp_19p13.3	Del_18q23	0.706	1
ATRX	HTRA2	0.707	1
ATRX	ROBO3	0.707	1
TCF12	Del_11p15.5	0.707	1
8q-Amp	Del_6p25.3	0.707	1
9q-Del	Del_11p15.5	0.707	1
Amp_12q14.1	Del_6p25.3	0.707	1
FAM47C	4q-Del	0.708	1
CIC	Del_18q23	0.709	1
PIK3R1	Amp_19p13.3	0.709	1
SLC6A3	7p-Amp	0.709	1
4p-Del	Amp_19p13.3	0.709	1
CIB1	NOTCH1	0.71	1
KRT3	NOTCH1	0.71	1
PLXNA3	Amp_4q12	0.71	1
PLXNA3	Del_5q34	0.71	1
SLC6A3	Del_5q34	0.71	1
ZMIZ1	Amp_4q12	0.71	1
ZMIZ1	Del_5q34	0.71	1
ZNF292	Amp_7q32.3	0.71	1
ANKRD36	Amp_7p11.2	0.711	1
NOTCH1	Del_6p25.3	0.711	1
NOTCH1	Del_Xq21.1	0.711	1
R3HDM1	Amp_7p11.2	0.711	1
ZNF292	Del_18q23	0.711	1
Amp_2p24.3	Amp_7p11.2	0.711	1
Del_3q13.31	Del_18q23	0.711	1
C9orf79	Amp_1q32.1	0.712	1
PDGFRA	Amp_1q32.1	0.712	1
SLC6A3	1p-Del	0.712	1
STK19	Amp_1q32.1	0.712	1
C4BPA	18p-Del	0.713	1
C4BPA	Amp_11q24.1	0.713	1
DLC1	18p-Del	0.713	1
DLC1	Amp_11q24.1	0.713	1
G6PC	18p-Del	0.713	1
G6PC	Amp_11q24.1	0.713	1
IRS4	Del_13q14.2	0.713	1
MYT1	18p-Del	0.713	1
MYT1	Amp_11q24.1	0.713	1
NEU2	18p-Del	0.713	1
NEU2	Amp_11q24.1	0.713	1
NIPBL	Amp_7p11.2	0.713	1
PLCG1	18p-Del	0.713	1
PPL	18p-Del	0.713	1
RB1	Amp_11q24.1	0.713	1
TRERF1	18p-Del	0.713	1
TRERF1	Amp_11q24.1	0.713	1
Amp_Xp11.22	Del_Xq21.1	0.713	1
ANKRD36	Amp_12q14.1	0.714	1
CREBZF	PTEN	0.714	1
CREBZF	Amp_12q14.1	0.714	1
CREBZF	Del_5p15.33	0.714	1
PTEN	RBPJ	0.714	1
PTEN	Amp_2p24.3	0.714	1
PTPN11	8q-Amp	0.714	1
PTPN11	Del_3p21.31	0.714	1
PTPN11	Del_5p15.33	0.714	1
R3HDM1	Amp_12q14.1	0.714	1
R3HDM1	Del_3p21.31	0.714	1
R3HDM1	Del_5p15.33	0.714	1
RBPJ	8q-Amp	0.714	1
RBPJ	Amp_12q14.1	0.714	1
RBPJ	Del_3p21.31	0.714	1
RBPJ	Del_5p15.33	0.714	1
RET	8q-Amp	0.714	1
RET	Amp_12q14.1	0.714	1
RET	Del_3p21.31	0.714	1
RET	Del_5p15.33	0.714	1
SLC12A7	8q-Amp	0.714	1
SLC12A7	Amp_12q14.1	0.714	1
SLC12A7	Del_5p15.33	0.714	1
8q-Amp	Del_9p21.3	0.714	1
14q-Del	Amp_12q14.1	0.714	1
14q-Del	Del_3p21.31	0.714	1
14q-Del	Del_5p15.33	0.714	1
Amp_2p24.3	Amp_12q14.1	0.714	1
Amp_2p24.3	Del_3p21.31	0.714	1
Amp_19p13.3	Del_1p32.3	0.714	1
KRAS	7q-Amp	0.715	1
NF1	Del_9p23	0.715	1
ZNF292	19p-Amp	0.715	1
19p-Amp	12q-Del	0.715	1
19p-Amp	Del_3q13.31	0.715	1
13q-Del	Del_6q26	0.715	1
Amp_3q26.33	Del_3q13.31	0.715	1
Amp_11q24.1	Del_9p21.3	0.715	1
Amp_17q25.1	Del_11p15.1	0.715	1
ABCA7	10p-Del	0.716	1
BRAF	CIC	0.716	1
BRAF	6q-Del	0.716	1
BRAF	Amp_12p13.32	0.716	1
C14orf4	10p-Del	0.716	1
CIC	HTRA2	0.716	1
CIC	ROBO3	0.716	1
EMG1	6q-Del	0.716	1
EMG1	Amp_12p13.32	0.716	1
ENGASE	6q-Del	0.716	1
ENGASE	Amp_12p13.32	0.716	1
HTRA2	NF1	0.716	1
HTRA2	Amp_12p13.32	0.716	1
NF1	ROBO3	0.716	1
NF1	4q-Del	0.716	1
NF1	Xq-Del	0.716	1
PDGFRA	10p-Del	0.716	1
PIK3R1	Del_9p23	0.716	1
ROBO3	Amp_12p13.32	0.716	1
SETD2	10p-Del	0.716	1
SMOC1	10p-Del	0.716	1
TMEM216	10p-Del	0.716	1
TNRC18	10p-Del	0.716	1
ZNF512B	6q-Del	0.716	1
ZNF709	10p-Del	0.716	1
10p-Del	Amp_1q22	0.716	1
4p-Del	Del_9p23	0.716	1
Xq-Del	Amp_12p13.32	0.716	1
Amp_17q25.1	Del_12q12	0.716	1
ARID2	Del_6q26	0.717	1
C9orf79	Del_10q26.3	0.717	1
DNMT3A	Del_6q26	0.717	1
ENGASE	IDH1	0.717	1
IDH1	ZNF512B	0.717	1
SETD2	Del_10q26.3	0.717	1
STK19	Del_10q26.3	0.717	1
Amp_13q34	Del_6q26	0.717	1
ARID2	TCF12	0.719	1
ARID2	15q-Del	0.719	1
DNMT3A	TCF12	0.719	1
DNMT3A	15q-Del	0.719	1
DNMT3A	9q-Del	0.719	1
KRAS	Amp_7p11.2	0.719	1
MYST4	15q-Del	0.719	1
MYST4	9q-Del	0.719	1
NUDT11	TCF12	0.719	1
NUDT11	15q-Del	0.719	1
NUDT11	9q-Del	0.719	1
TCF12	Amp_13q34	0.719	1
TCF12	Del_7p22.3	0.719	1
15q-Del	Del_7p22.3	0.719	1
9q-Del	Amp_13q34	0.719	1
11p-Del	Amp_19p13.3	0.72	1
13q-Del	Del_18q23	0.72	1
Amp_10p15.3	Amp_19p13.3	0.72	1
Del_6q22.31	Del_18q23	0.72	1
C4BPA	10p-Amp	0.722	1
C4BPA	Del_12q12	0.722	1
CIB1	14q-Del	0.722	1
DLC1	10p-Amp	0.722	1
DLC1	Del_12q12	0.722	1
DLX6	14q-Del	0.722	1
ELF4	14q-Del	0.722	1
G6PC	Del_12q12	0.722	1
KRT3	14q-Del	0.722	1
NAP1L2	14q-Del	0.722	1
NEU2	10p-Amp	0.722	1
NEU2	Del_12q12	0.722	1
NRAS	14q-Del	0.722	1
NUDT11	Del_1p32.3	0.722	1
PIK3R1	Del_2q37.3	0.722	1
PLCG1	10p-Amp	0.722	1
PPL	10p-Amp	0.722	1
PPL	Del_12q12	0.722	1
RB1	10p-Amp	0.722	1
RB1	Del_12q12	0.722	1
SMARCB1	14q-Del	0.722	1
SRPX	14q-Del	0.722	1
TRERF1	10p-Amp	0.722	1
TRERF1	Del_12q12	0.722	1
12q-Del	Amp_10p15.3	0.722	1
18p-Del	Amp_4q12	0.722	1
4p-Del	Del_2q37.3	0.722	1
Amp_2p24.3	Del_14q24.3	0.722	1
Amp_11q24.1	Del_5q34	0.722	1
ANKRD36	Del_6p25.3	0.724	1
CREBZF	Del_6p25.3	0.724	1
PTPN11	Del_6p25.3	0.724	1
RET	Del_6p25.3	0.724	1
SLC12A7	Del_6p25.3	0.724	1
DNMT3A	Del_11p15.1	0.725	1
KRAS	Del_14q24.3	0.725	1
MYST4	Del_11p15.1	0.725	1
PIK3CA	19p-Amp	0.725	1
PIK3CA	Amp_3q26.33	0.725	1
PIK3R1	PTEN	0.725	1
PIK3R1	Del_3p21.31	0.725	1
PTEN	4p-Del	0.725	1
Del_5p15.33	Del_14q24.3	0.725	1
Del_7p22.3	Del_11p15.1	0.725	1
ABCA7	11q-Amp	0.726	1
ABCA7	Del_8q24.3	0.726	1
CUL4B	11q-Amp	0.726	1
CUL4B	Del_8q24.3	0.726	1
FUBP1	Amp_17q25.1	0.726	1
GAGE2A	Amp_17q25.1	0.726	1
GAGE2A	Del_3q29	0.726	1
IDH2	IRS4	0.726	1
IDH2	Xp-Del	0.726	1
IRS4	Del_3q29	0.726	1
PDGFRA	11q-Amp	0.726	1
PRX	11q-Amp	0.726	1
SETD2	11q-Amp	0.726	1
SETD2	Del_8q24.3	0.726	1
STK19	11q-Amp	0.726	1
STK19	Del_8q24.3	0.726	1
TNRC18	11q-Amp	0.726	1
TNRC18	Del_8q24.3	0.726	1
11q-Amp	Amp_1q22	0.726	1
18p-Del	Del_6q26	0.726	1
Xp-Del	Amp_17q25.1	0.726	1
Amp_11q24.1	Del_11p15.5	0.726	1
Del_3q29	Del_6q22.31	0.726	1
13q-Del	Amp_7p11.2	0.727	1
CIB1	Del_18q23	0.728	1
DLX6	Del_18q23	0.728	1
DLX6	Del_22q13.31	0.728	1
ELF4	Del_18q23	0.728	1
ELF4	Del_22q13.31	0.728	1
KRT3	Del_22q13.31	0.728	1
NAP1L2	Del_22q13.31	0.728	1
NRAS	Del_18q23	0.728	1
SMARCB1	Del_18q23	0.728	1
SMARCB1	Del_22q13.31	0.728	1
SRPX	Del_18q23	0.728	1
SRPX	Del_22q13.31	0.728	1
8q-Amp	Del_18q23	0.728	1
8q-Amp	Del_22q13.31	0.728	1
Amp_12q14.1	Del_18q23	0.728	1
Del_3p21.31	Del_18q23	0.728	1
Del_5p15.33	Del_18q23	0.728	1
CIC	Del_4q34.3	0.729	1
EGFR	Del_18q23	0.729	1
10q-Del	Del_5p15.33	0.729	1
G6PC	1p-Del	0.73	1
NIPBL	4q-Del	0.73	1
NIPBL	Amp_7q32.3	0.73	1
PPL	1p-Del	0.73	1
C4BPA	18q-Del	0.731	1
C4BPA	22q-Del	0.731	1
DLC1	18q-Del	0.731	1
DLC1	22q-Del	0.731	1
G6PC	18q-Del	0.731	1
G6PC	22q-Del	0.731	1
GAGE2A	9p-Del	0.731	1
IRS4	9p-Del	0.731	1
MYT1	18q-Del	0.731	1
MYT1	22q-Del	0.731	1
NEU2	18q-Del	0.731	1
NEU2	22q-Del	0.731	1
PLCG1	SMARCA4	0.731	1
PLCG1	18q-Del	0.731	1
PPL	18q-Del	0.731	1
PPL	22q-Del	0.731	1
SMARCA4	Del_3q29	0.731	1
TRERF1	18q-Del	0.731	1
TRERF1	22q-Del	0.731	1
14q-Del	Amp_Xp11.22	0.731	1
19p-Amp	Amp_Xp11.22	0.732	1
19p-Amp	Del_Xq21.1	0.732	1
Amp_3q26.33	Amp_Xp11.22	0.732	1
Del_6q22.31	Del_11p15.1	0.732	1
ARID2	13q-Del	0.733	1
CIC	ZBTB20	0.733	1
CIC	13q-Del	0.733	1
DNMT3A	Del_6q22.31	0.733	1
13q-Del	Amp_13q34	0.733	1
13q-Del	Del_7p22.3	0.733	1
Amp_13q34	Del_6q22.31	0.733	1
Amp_17q25.1	Del_13q14.2	0.733	1
ANKRD36	PIK3R1	0.734	1
ANKRD36	4p-Del	0.734	1
CIB1	Amp_10p15.3	0.734	1
CREBZF	4p-Del	0.734	1
DLX6	11p-Del	0.734	1
DLX6	Amp_10p15.3	0.734	1
ELF4	11p-Del	0.734	1
ELF4	Amp_10p15.3	0.734	1
NAP1L2	11p-Del	0.734	1
NAP1L2	Amp_10p15.3	0.734	1
NRAS	11p-Del	0.734	1
PIK3R1	PTPN11	0.734	1
PIK3R1	RBPJ	0.734	1
PIK3R1	Amp_2p24.3	0.734	1
PTPN11	4p-Del	0.734	1
R3HDM1	4p-Del	0.734	1
SMARCB1	11p-Del	0.734	1
SRPX	Amp_10p15.3	0.734	1
18p-Del	6q-Del	0.734	1
4p-Del	Amp_2p24.3	0.734	1
6q-Del	Amp_11q24.1	0.734	1
9p-Del	Amp_8q24.13	0.734	1
Amp_3q26.33	Del_2q37.3	0.734	1
ARID2	12q-Del	0.735	1
ARID2	Del_3q13.31	0.735	1
DNMT3A	12q-Del	0.735	1
DNMT3A	Del_3q13.31	0.735	1
MYST4	12q-Del	0.735	1
MYST4	Del_3q13.31	0.735	1
NUDT11	12q-Del	0.735	1
NUDT11	Del_3q13.31	0.735	1
PRX	Amp_7q31.2	0.735	1
SETD2	Amp_7q31.2	0.735	1
TNRC18	Amp_7q31.2	0.735	1
ZNF292	Amp_13q34	0.735	1
ZNF292	Del_7p22.3	0.735	1
12q-Del	Del_7p22.3	0.735	1
Amp_13q34	Del_3q13.31	0.735	1
FAM47C	Del_1p32.3	0.736	1
19q-Del	Amp_19p13.3	0.736	1
NUDT11	19q-Del	0.737	1
PLXNA3	10q-Del	0.737	1
SLC6A3	Amp_1q32.1	0.737	1
ZMIZ1	Amp_1q32.1	0.737	1
13q-Del	Del_1p36.32	0.737	1
ARID1A	GAGE2A	0.738	1
ATRX	R3HDM1	0.738	1
ATRX	RET	0.738	1
ATRX	SLC12A7	0.738	1
FAM47C	GAGE2A	0.738	1
FAM47C	Xp-Del	0.738	1
GAGE2A	Amp_4q12	0.738	1
GAGE2A	Del_9p21.3	0.738	1
IRS4	Amp_4q12	0.738	1
IRS4	Del_9p21.3	0.738	1
14q-Del	Del_4q34.3	0.738	1
Xp-Del	Amp_4q12	0.738	1
Xp-Del	Del_5q34	0.738	1
Xp-Del	Del_9p21.3	0.738	1
TMEM216	Del_6q26	0.739	1
ZNF709	Del_6q26	0.739	1
11p-Del	Del_6q22.31	0.739	1
Amp_10p15.3	Del_6q22.31	0.739	1
Amp_11q24.1	Del_11p15.1	0.739	1
DLC1	Amp_19p13.3	0.74	1
G6PC	Amp_19p13.3	0.74	1
MYT1	Amp_19p13.3	0.74	1
PLCG1	Amp_19p13.3	0.74	1
PPL	Amp_19p13.3	0.74	1
RB1	Amp_19p13.3	0.74	1
TRERF1	Amp_19p13.3	0.74	1
Amp_7q31.2	Del_18q23	0.74	1
ABCA7	TCF12	0.741	1
ABCA7	9q-Del	0.741	1
C9orf79	TCF12	0.741	1
C9orf79	15q-Del	0.741	1
CUL4B	9q-Del	0.741	1
PDGFRA	TCF12	0.741	1
PDGFRA	15q-Del	0.741	1
PIK3R1	7p-Amp	0.741	1
PRX	TCF12	0.741	1
PRX	9q-Del	0.741	1
PTEN	Amp_10p15.3	0.741	1
SETD2	TCF12	0.741	1
SETD2	15q-Del	0.741	1
SETD2	9q-Del	0.741	1
STK19	TCF12	0.741	1
STK19	15q-Del	0.741	1
STK19	9q-Del	0.741	1
TCF12	Amp_1q22	0.741	1
TNRC18	15q-Del	0.741	1
TNRC18	9q-Del	0.741	1
7p-Amp	15q-Del	0.741	1
7p-Amp	4p-Del	0.741	1
15q-Del	Amp_1q22	0.741	1
Amp_10p15.3	Amp_12q14.1	0.741	1
Amp_Xp11.22	Del_22q13.31	0.741	1
Del_18q23	Del_Xq21.1	0.741	1
Del_22q13.31	Del_Xq21.1	0.741	1
EGFR	18q-Del	0.742	1
IDH1	MYST4	0.742	1
PIK3R1	Del_6p25.3	0.742	1
11q-Amp	Del_9p23	0.742	1
PLXNA3	Del_4q34.3	0.743	1
PTEN	ZBTB20	0.743	1
ZBTB20	Amp_12q14.1	0.743	1
ZMIZ1	Amp_8q24.13	0.743	1
12q-Del	Del_10q26.3	0.743	1
BRAF	Amp_7q32.3	0.744	1
C14orf4	Del_11p15.1	0.744	1
DLC1	Del_9p23	0.744	1
EMG1	Amp_7q32.3	0.744	1
ENGASE	Amp_7q32.3	0.744	1
G6PC	Del_9p23	0.744	1
MED9	Del_11p15.1	0.744	1
MYT1	Del_9p23	0.744	1
PPL	Del_9p23	0.744	1
RB1	Del_9p23	0.744	1
SMOC1	Del_11p15.1	0.744	1
TMEM216	Del_1p36.32	0.744	1
TMEM216	Del_11p15.1	0.744	1
TRERF1	Del_9p23	0.744	1
ZNF512B	Amp_7q32.3	0.744	1
ZNF709	Del_1p36.32	0.744	1
Amp_7q31.2	Del_5p15.33	0.744	1
Del_1p32.3	Del_14q24.3	0.744	1
ANKRD36	ZBTB20	0.745	1
ATRX	6q-Del	0.745	1
CREBZF	ZBTB20	0.745	1
PTPN11	ZBTB20	0.745	1
ZBTB20	Amp_2p24.3	0.745	1
ATRX	9p-Del	0.746	1
C14orf4	Del_1p32.3	0.746	1
IDH2	Amp_19p13.3	0.746	1
MED9	Del_1p32.3	0.746	1
TMEM216	Del_1p32.3	0.746	1
ZNF709	Del_1p32.3	0.746	1
BRAF	4q-Del	0.747	1
EMG1	4q-Del	0.747	1
ENGASE	4q-Del	0.747	1
GAGE2A	Del_1p36.32	0.747	1
ROBO3	4q-Del	0.747	1
ZNF512B	4q-Del	0.747	1
18q-Del	Del_13q14.2	0.747	1
4q-Del	Xq-Del	0.747	1
13q-Del	Del_6q22.31	0.748	1
C14orf4	FUBP1	0.749	1
C14orf4	13q-Del	0.749	1
C4BPA	Amp_12q14.1	0.749	1
C4BPA	Del_3p21.31	0.749	1
C4BPA	Del_5p15.33	0.749	1
DLC1	8q-Amp	0.749	1
DLC1	Del_3p21.31	0.749	1
DLC1	Del_5p15.33	0.749	1
FUBP1	MED9	0.749	1
FUBP1	SMOC1	0.749	1
FUBP1	TMEM216	0.749	1
G6PC	8q-Amp	0.749	1
G6PC	Del_3p21.31	0.749	1
G6PC	Del_5p15.33	0.749	1
MYT1	Amp_12q14.1	0.749	1
NEU2	8q-Amp	0.749	1
NEU2	Amp_12q14.1	0.749	1
NEU2	Del_3p21.31	0.749	1
NEU2	Del_5p15.33	0.749	1
PLCG1	8q-Amp	0.749	1
PLCG1	Del_3p21.31	0.749	1
PLCG1	Del_5p15.33	0.749	1
PPL	8q-Amp	0.749	1
PPL	Amp_12q14.1	0.749	1
PPL	Del_3p21.31	0.749	1
PPL	Del_5p15.33	0.749	1
RB1	8q-Amp	0.749	1
RB1	Amp_12q14.1	0.749	1
RB1	Del_3p21.31	0.749	1
RB1	Del_5p15.33	0.749	1
SMOC1	13q-Del	0.749	1
TRERF1	8q-Amp	0.749	1
TRERF1	Amp_12q14.1	0.749	1
TRERF1	Del_3p21.31	0.749	1
TRERF1	Del_5p15.33	0.749	1
ZNF709	13q-Del	0.749	1
ZNF709	Del_6q22.31	0.749	1
Del_6q26	Del_12q12	0.749	1
FAM47C	SMARCA4	0.75	1
GAGE2A	NIPBL	0.75	1
NIPBL	Xp-Del	0.75	1
SLC6A3	11q-Amp	0.75	1
SMARCA4	Del_5q34	0.75	1
TCF12	6q-Del	0.75	1
ZMIZ1	11q-Amp	0.75	1
6q-Del	9q-Del	0.75	1
Amp_4q12	Amp_7q31.2	0.75	1
GAGE2A	Del_1p32.3	0.751	1
11p-Del	Del_Xq21.1	0.751	1
ARID2	Amp_Xp11.22	0.752	1
ARID2	Del_Xq21.1	0.752	1
DNMT3A	Amp_Xp11.22	0.752	1
FUBP1	18p-Del	0.752	1
KRAS	Del_13q14.2	0.752	1
MYST4	Amp_Xp11.22	0.752	1
MYST4	Del_Xq21.1	0.752	1
NF1	10p-Amp	0.752	1
NUDT11	TP53	0.752	1
NUDT11	Del_Xq21.1	0.752	1
13q-Del	18p-Del	0.752	1
18p-Del	Del_6q22.31	0.752	1
6q-Del	Del_12q12	0.752	1
Amp_13q34	Amp_Xp11.22	0.752	1
Amp_Xp11.22	Del_7p22.3	0.752	1
CIB1	EGFR	0.753	1
EGFR	KRT3	0.753	1
EGFR	NAP1L2	0.753	1
EGFR	NRAS	0.753	1
TP53	Amp_7q32.3	0.753	1
Del_13q14.2	Del_18q23	0.753	1
ABCA7	Del_6q26	0.754	1
BRAF	18p-Del	0.754	1
BRAF	Amp_11q24.1	0.754	1
CUL4B	Del_6q26	0.754	1
EGFR	ZNF292	0.754	1
EMG1	18p-Del	0.754	1
EMG1	Amp_11q24.1	0.754	1
ENGASE	18p-Del	0.754	1
ENGASE	Amp_11q24.1	0.754	1
HTRA2	18p-Del	0.754	1
HTRA2	Amp_11q24.1	0.754	1
MED9	19q-Del	0.754	1
PRX	Del_6q26	0.754	1
ROBO3	18p-Del	0.754	1
TMEM216	19q-Del	0.754	1
ZNF512B	18p-Del	0.754	1
ZNF512B	Amp_11q24.1	0.754	1
ZNF709	19q-Del	0.754	1
Del_9p21.3	Del_18q23	0.754	1
ABCA7	12q-Del	0.756	1
ABCA7	Del_3q13.31	0.756	1
ANKRD36	IDH2	0.756	1
ANKRD36	Del_3q29	0.756	1
C9orf79	12q-Del	0.756	1
C9orf79	Del_3q13.31	0.756	1
CREBZF	IDH2	0.756	1
CREBZF	Amp_17q25.1	0.756	1
CREBZF	Del_3q29	0.756	1
CUL4B	12q-Del	0.756	1
CUL4B	Del_3q13.31	0.756	1
GAGE2A	7p-Amp	0.756	1
IDH2	PTPN11	0.756	1
IDH2	R3HDM1	0.756	1
IDH2	RET	0.756	1
IDH2	SLC12A7	0.756	1
IDH2	Amp_2p24.3	0.756	1
IRS4	7p-Amp	0.756	1
PRX	12q-Del	0.756	1
PRX	Del_3q13.31	0.756	1
PTPN11	Amp_17q25.1	0.756	1
R3HDM1	Amp_17q25.1	0.756	1
R3HDM1	Del_3q29	0.756	1
RBPJ	Amp_17q25.1	0.756	1
RBPJ	Del_3q29	0.756	1
RET	Amp_17q25.1	0.756	1
RET	Del_3q29	0.756	1
SETD2	12q-Del	0.756	1
SETD2	Del_3q13.31	0.756	1
SLC12A7	Amp_17q25.1	0.756	1
SLC12A7	Del_3q29	0.756	1
STK19	12q-Del	0.756	1
STK19	Del_3q13.31	0.756	1
TNRC18	12q-Del	0.756	1
TNRC18	Del_3q13.31	0.756	1
ZNF292	Amp_1q22	0.756	1
12q-Del	Amp_1q22	0.756	1
Amp_1q22	Del_3q13.31	0.756	1
PLXNA3	10p-Del	0.757	1
Del_4q34.3	Del_22q13.31	0.757	1
ARID2	PIK3CA	0.758	1
C4BPA	Del_6p25.3	0.758	1
DLC1	Del_6p25.3	0.758	1
MYST4	PIK3CA	0.758	1
MYT1	Del_6p25.3	0.758	1
NUDT11	PIK3CA	0.758	1
PIK3CA	Amp_13q34	0.758	1
PIK3CA	Del_7p22.3	0.758	1
RB1	Del_6p25.3	0.758	1
TRERF1	Del_6p25.3	0.758	1
IDH1	PIK3R1	0.759	1
IDH2	PIK3CA	0.759	1
Amp_7p11.2	Amp_11q24.1	0.759	1
Amp_7q32.3	Amp_Xp11.22	0.759	1
Amp_Xp11.22	Del_13q14.2	0.759	1
Del_13q14.2	Del_Xq21.1	0.759	1
IDH2	Amp_12q14.1	0.761	1
IDH2	Del_3p21.31	0.761	1
KRAS	TP53	0.761	1
PTEN	Del_3q29	0.761	1
Amp_17q25.1	Del_3p21.31	0.761	1
BRAF	10p-Amp	0.762	1
BRAF	Del_12q12	0.762	1
C9orf79	Del_11p15.1	0.762	1
EMG1	10p-Amp	0.762	1
ENGASE	10p-Amp	0.762	1
ENGASE	Del_12q12	0.762	1
GAGE2A	19q-Del	0.762	1
GAGE2A	Amp_1q32.1	0.762	1
HTRA2	10p-Amp	0.762	1
IRS4	Amp_1q32.1	0.762	1
KRAS	9p-Del	0.762	1
KRAS	Del_11p15.5	0.762	1
PRX	Del_11p15.1	0.762	1
ROBO3	Del_12q12	0.762	1
SETD2	Del_11p15.1	0.762	1
ZNF512B	10p-Amp	0.762	1
ZNF512B	Del_12q12	0.762	1
10p-Amp	Xq-Del	0.762	1
Xq-Del	Del_12q12	0.762	1
ZNF292	Amp_7q31.2	0.763	1
ATRX	Del_6p25.3	0.764	1
BRAF	Del_10q26.3	0.764	1
C14orf4	PIK3CA	0.764	1
EMG1	Del_10q26.3	0.764	1
HTRA2	Del_10q26.3	0.764	1
MED9	PIK3CA	0.764	1
NF1	Del_18q23	0.764	1
PIK3CA	SMOC1	0.764	1
PIK3CA	TMEM216	0.764	1
PLXNA3	TCF12	0.764	1
PLXNA3	15q-Del	0.764	1
PLXNA3	9q-Del	0.764	1
SLC6A3	15q-Del	0.764	1
SLC6A3	9q-Del	0.764	1
TCF12	ZMIZ1	0.764	1
ZMIZ1	9q-Del	0.764	1
6q-Del	Del_18q23	0.764	1
Xq-Del	Del_10q26.3	0.764	1
Amp_12p13.32	Del_18q23	0.764	1
ARID1A	Amp_19p13.3	0.765	1
CREBZF	Del_13q14.2	0.765	1
PTPN11	Del_13q14.2	0.765	1
R3HDM1	Del_13q14.2	0.765	1
15q-Del	Del_9p21.3	0.765	1
22q-Del	Amp_7q32.3	0.765	1
Amp_1q32.1	Del_14q24.3	0.765	1
Amp_2p24.3	Del_13q14.2	0.765	1
Amp_8q24.13	Del_6p25.3	0.765	1
Amp_19p13.3	Del_5q34	0.765	1
CIB1	NF1	0.766	1
CIB1	6q-Del	0.766	1
CIB1	Amp_12p13.32	0.766	1
DLX6	6q-Del	0.766	1
ELF4	6q-Del	0.766	1
ELF4	Amp_12p13.32	0.766	1
KRT3	6q-Del	0.766	1
KRT3	Amp_12p13.32	0.766	1
NAP1L2	NF1	0.766	1
NAP1L2	6q-Del	0.766	1
NAP1L2	Amp_12p13.32	0.766	1
NF1	NRAS	0.766	1
NRAS	6q-Del	0.766	1
PIK3CA	Del_18q23	0.766	1
SMARCB1	6q-Del	0.766	1
SRPX	6q-Del	0.766	1
SRPX	Amp_12p13.32	0.766	1
ANKRD36	ARID1A	0.767	1
ANKRD36	FAM47C	0.767	1
ANKRD36	Amp_4q12	0.767	1
ANKRD36	Del_5q34	0.767	1
ARID1A	CREBZF	0.767	1
ARID1A	PTPN11	0.767	1
ARID1A	Amp_2p24.3	0.767	1
CREBZF	FAM47C	0.767	1
CREBZF	Del_5q34	0.767	1
DNMT3A	Del_2q37.3	0.767	1
FAM47C	PTPN11	0.767	1
FAM47C	RBPJ	0.767	1
FAM47C	Amp_2p24.3	0.767	1
MYST4	Del_2q37.3	0.767	1
PTPN11	Del_5q34	0.767	1
R3HDM1	Amp_4q12	0.767	1
R3HDM1	Del_5q34	0.767	1
RET	Amp_4q12	0.767	1
RET	Del_5q34	0.767	1
SLC12A7	Amp_4q12	0.767	1
SLC12A7	Del_5q34	0.767	1
Amp_2p24.3	Amp_4q12	0.767	1
Amp_2p24.3	Del_5q34	0.767	1
ARID2	7q-Amp	0.768	1
C4BPA	7q-Amp	0.768	1
C4BPA	4p-Del	0.768	1
DLC1	4p-Del	0.768	1
DNMT3A	7q-Amp	0.768	1
G6PC	4p-Del	0.768	1
MYT1	4p-Del	0.768	1
NEU2	4p-Del	0.768	1
NIPBL	Del_11p15.1	0.768	1
NUDT11	7q-Amp	0.768	1
PIK3R1	PLCG1	0.768	1
PLCG1	4p-Del	0.768	1
PPL	7q-Amp	0.768	1
PPL	4p-Del	0.768	1
RB1	4p-Del	0.768	1
TRERF1	7q-Amp	0.768	1
TRERF1	4p-Del	0.768	1
10p-Del	Del_8q24.3	0.768	1
ABCA7	FUBP1	0.769	1
ABCA7	Del_6q22.31	0.769	1
ARID2	19p-Amp	0.769	1
ARID2	Amp_3q26.33	0.769	1
C14orf4	Del_2q37.3	0.769	1
C9orf79	FUBP1	0.769	1
CUL4B	13q-Del	0.769	1
CUL4B	Del_6q22.31	0.769	1
DNMT3A	19p-Amp	0.769	1
DNMT3A	Amp_3q26.33	0.769	1
FUBP1	PDGFRA	0.769	1
FUBP1	STK19	0.769	1
FUBP1	TNRC18	0.769	1
FUBP1	Amp_1q22	0.769	1
MED9	Del_2q37.3	0.769	1
MYST4	19p-Amp	0.769	1
MYST4	Amp_3q26.33	0.769	1
NUDT11	19p-Amp	0.769	1
NUDT11	Amp_3q26.33	0.769	1
PDGFRA	13q-Del	0.769	1
PDGFRA	Del_6q22.31	0.769	1
PIK3R1	Amp_7p11.2	0.769	1
PRX	13q-Del	0.769	1
PRX	Del_6q22.31	0.769	1
SMOC1	Del_2q37.3	0.769	1
STK19	13q-Del	0.769	1
TMEM216	Del_2q37.3	0.769	1
TNRC18	Del_6q22.31	0.769	1
ZNF709	Del_2q37.3	0.769	1
19p-Amp	Del_7p22.3	0.769	1
13q-Del	Amp_1q22	0.769	1
Amp_1q22	Del_6q22.31	0.769	1
Amp_3q26.33	Del_7p22.3	0.769	1
BRAF	18q-Del	0.77	1
BRAF	22q-Del	0.77	1
EMG1	SMARCA4	0.77	1
EMG1	18q-Del	0.77	1
EMG1	22q-Del	0.77	1
ENGASE	18q-Del	0.77	1
ENGASE	22q-Del	0.77	1
HTRA2	SMARCA4	0.77	1
HTRA2	18q-Del	0.77	1
ROBO3	18q-Del	0.77	1
ROBO3	22q-Del	0.77	1
SMARCA4	Xq-Del	0.77	1
SMARCA4	Amp_12p13.32	0.77	1
ZNF512B	18q-Del	0.77	1
ZNF512B	22q-Del	0.77	1
18q-Del	6q-Del	0.77	1
18q-Del	Xq-Del	0.77	1
18p-Del	Amp_7q31.2	0.771	1
18q-Del	Del_6q26	0.771	1
ABCA7	Amp_Xp11.22	0.772	1
ABCA7	Del_Xq21.1	0.772	1
C9orf79	Amp_Xp11.22	0.772	1
C9orf79	Del_Xq21.1	0.772	1
CUL4B	Del_Xq21.1	0.772	1
NEU2	Amp_7p11.2	0.772	1
PDGFRA	Amp_Xp11.22	0.772	1
PPL	Amp_7p11.2	0.772	1
PRX	Amp_Xp11.22	0.772	1
PRX	Del_Xq21.1	0.772	1
STK19	Amp_Xp11.22	0.772	1
STK19	Del_Xq21.1	0.772	1
TNRC18	Del_Xq21.1	0.772	1
TRERF1	Amp_7p11.2	0.772	1
Amp_1q22	Amp_Xp11.22	0.772	1
Amp_1q22	Del_Xq21.1	0.772	1
FUBP1	Del_12q12	0.773	1
GAGE2A	Del_19q13.42	0.773	1
PLXNA3	Del_10q26.3	0.773	1
10p-Amp	Del_6q22.31	0.773	1
11q-Amp	4q-Del	0.773	1
10q-Del	15q-Del	0.773	1
4q-Del	Del_8q24.3	0.773	1
Xp-Del	Del_19q13.42	0.773	1
Del_6q22.31	Del_12q12	0.773	1
ARID2	Amp_7p11.2	0.774	1
C14orf4	NOTCH1	0.774	1
CIC	IRS4	0.774	1
MED9	NOTCH1	0.774	1
MED9	1p-Del	0.774	1
NOTCH1	SMOC1	0.774	1
NOTCH1	TMEM216	0.774	1
NUDT11	1p-Del	0.774	1
PPL	Del_19q13.42	0.774	1
TMEM216	1p-Del	0.774	1
ZNF292	7p-Amp	0.774	1
ZNF709	1p-Del	0.774	1
Amp_7p11.2	Del_7p22.3	0.774	1
ARID2	NOTCH1	0.775	1
GAGE2A	11q-Amp	0.775	1
IRS4	11q-Amp	0.775	1
NF1	Del_3q13.31	0.775	1
ZNF292	Amp_12p13.32	0.775	1
11q-Amp	Xp-Del	0.775	1
12q-Del	6q-Del	0.775	1
6q-Del	Del_3q13.31	0.775	1
Amp_12p13.32	Del_3q13.31	0.775	1
BRAF	Amp_7q31.2	0.776	1
CUL4B	Del_19q13.42	0.776	1
EMG1	Amp_7q31.2	0.776	1
ENGASE	Amp_7q31.2	0.776	1
KRAS	7p-Amp	0.776	1
ZNF512B	Amp_7q31.2	0.776	1
Amp_17q25.1	Del_6p25.3	0.776	1
PLCG1	ZBTB20	0.777	1
Amp_1q32.1	Del_12q12	0.777	1
ANKRD36	NIPBL	0.778	1
ARID2	Del_9p21.3	0.778	1
BRAF	Amp_19p13.3	0.778	1
CIB1	Del_9p21.3	0.778	1
CREBZF	NIPBL	0.778	1
ENGASE	Amp_19p13.3	0.778	1
HTRA2	Amp_19p13.3	0.778	1
NAP1L2	Del_9p21.3	0.778	1
NIPBL	PTPN11	0.778	1
NIPBL	RBPJ	0.778	1
NIPBL	Amp_2p24.3	0.778	1
NRAS	Del_9p21.3	0.778	1
PLXNA3	12q-Del	0.778	1
PLXNA3	Del_3q13.31	0.778	1
ROBO3	Amp_19p13.3	0.778	1
SLC6A3	12q-Del	0.778	1
SMARCB1	Del_9p21.3	0.778	1
SRPX	Del_9p21.3	0.778	1
ZMIZ1	12q-Del	0.778	1
ZMIZ1	Del_3q13.31	0.778	1
ZNF512B	Amp_19p13.3	0.778	1
Xq-Del	Amp_19p13.3	0.778	1
ARID1A	PTEN	0.779	1
ARID1A	Del_5p15.33	0.779	1
FAM47C	Amp_12q14.1	0.779	1
FAM47C	Del_5p15.33	0.779	1
PTEN	Del_5q34	0.779	1
11p-Del	Amp_3q26.33	0.779	1
Amp_3q26.33	Amp_10p15.3	0.779	1
Amp_4q12	Del_3p21.31	0.779	1
Del_3p21.31	Del_5q34	0.779	1
EGFR	Del_3p21.31	0.78	1
EGFR	Del_5p15.33	0.78	1
GAGE2A	10q-Del	0.78	1
IDH1	MYT1	0.78	1
IDH1	PPL	0.78	1
IDH1	TRERF1	0.78	1
ZBTB20	14q-Del	0.78	1
10q-Del	Xp-Del	0.78	1
9p-Del	Amp_Xp11.22	0.78	1
Del_11p15.5	Del_Xq21.1	0.78	1
C4BPA	Del_14q24.3	0.781	1
CREBZF	9p-Del	0.781	1
NEU2	Del_14q24.3	0.781	1
PTPN11	9p-Del	0.781	1
R3HDM1	9p-Del	0.781	1
R3HDM1	Del_11p15.5	0.781	1
TRERF1	Del_14q24.3	0.781	1
15q-Del	Del_9p23	0.781	1
Amp_2p24.3	Del_11p15.5	0.781	1
CIB1	Del_19q13.42	0.782	1
NAP1L2	Del_19q13.42	0.782	1
SRPX	Del_19q13.42	0.782	1
TCF12	Amp_8q24.13	0.782	1
TCF12	Del_4q34.3	0.782	1
11p-Del	4p-Del	0.782	1
CIC	18p-Del	0.783	1
NIPBL	Amp_19p13.3	0.783	1
TMEM216	14q-Del	0.783	1
ZNF709	14q-Del	0.783	1
PDGFRA	Del_9p23	0.785	1
PIK3R1	Del_14q24.3	0.785	1
PRX	Del_9p23	0.785	1
STK19	Del_9p23	0.785	1
18p-Del	Del_8q24.3	0.785	1
ARID2	Del_7p22.3	0.786	1
ATRX	DNMT3A	0.786	1
ATRX	NUDT11	0.786	1
BRAF	8q-Amp	0.786	1
BRAF	Amp_12q14.1	0.786	1
BRAF	Del_3p21.31	0.786	1
BRAF	Del_5p15.33	0.786	1
DNMT3A	Amp_13q34	0.786	1
DNMT3A	Del_7p22.3	0.786	1
EMG1	PTEN	0.786	1
EMG1	8q-Amp	0.786	1
EMG1	Amp_12q14.1	0.786	1
EMG1	Del_5p15.33	0.786	1
ENGASE	Amp_12q14.1	0.786	1
ENGASE	Del_3p21.31	0.786	1
ENGASE	Del_5p15.33	0.786	1
HTRA2	PTEN	0.786	1
HTRA2	Amp_12q14.1	0.786	1
HTRA2	Del_5p15.33	0.786	1
IRS4	Amp_8q24.13	0.786	1
IRS4	Del_4q34.3	0.786	1
MYST4	Amp_13q34	0.786	1
MYST4	Del_7p22.3	0.786	1
NUDT11	Amp_13q34	0.786	1
NUDT11	Del_7p22.3	0.786	1
PTEN	ROBO3	0.786	1
ROBO3	8q-Amp	0.786	1
ROBO3	Amp_12q14.1	0.786	1
ROBO3	Del_3p21.31	0.786	1
ROBO3	Del_5p15.33	0.786	1
ZNF512B	8q-Amp	0.786	1
ZNF512B	Amp_12q14.1	0.786	1
ZNF512B	Del_3p21.31	0.786	1
ZNF512B	Del_5p15.33	0.786	1
8q-Amp	Xq-Del	0.786	1
Xp-Del	Amp_8q24.13	0.786	1
Xp-Del	Del_4q34.3	0.786	1
Xq-Del	Del_5p15.33	0.786	1
Amp_13q34	Del_7p22.3	0.786	1
C4BPA	IDH2	0.787	1
C4BPA	Amp_17q25.1	0.787	1
C4BPA	Del_3q29	0.787	1
DLC1	IDH2	0.787	1
DLC1	Amp_17q25.1	0.787	1
G6PC	IDH2	0.787	1
G6PC	Del_3q29	0.787	1
GAGE2A	TCF12	0.787	1
GAGE2A	15q-Del	0.787	1
IDH2	MYT1	0.787	1
IDH2	NEU2	0.787	1
IDH2	PLCG1	0.787	1
IDH2	PPL	0.787	1
IDH2	RB1	0.787	1
IDH2	TRERF1	0.787	1
IRS4	TCF12	0.787	1
IRS4	15q-Del	0.787	1
IRS4	9q-Del	0.787	1
MYT1	Del_3q29	0.787	1
NEU2	Amp_17q25.1	0.787	1
NIPBL	Amp_7q31.2	0.787	1
PLCG1	Amp_17q25.1	0.787	1
PPL	Amp_17q25.1	0.787	1
RB1	Amp_17q25.1	0.787	1
RB1	Del_3q29	0.787	1
SMARCA4	Del_9p21.3	0.787	1
TRERF1	Amp_17q25.1	0.787	1
TRERF1	Del_3q29	0.787	1
15q-Del	Xp-Del	0.787	1
Amp_7p11.2	Del_13q14.2	0.787	1
ABCA7	Amp_3q26.33	0.788	1
C14orf4	Del_18q23	0.788	1
C14orf4	Del_22q13.31	0.788	1
C9orf79	19p-Amp	0.788	1
C9orf79	Amp_3q26.33	0.788	1
CUL4B	Amp_3q26.33	0.788	1
MED9	Del_18q23	0.788	1
PDGFRA	19p-Amp	0.788	1
PDGFRA	Amp_3q26.33	0.788	1
PRX	Amp_3q26.33	0.788	1
SETD2	19p-Amp	0.788	1
SMOC1	Del_18q23	0.788	1
SMOC1	Del_22q13.31	0.788	1
TMEM216	Del_18q23	0.788	1
TMEM216	Del_22q13.31	0.788	1
TNRC18	19p-Amp	0.788	1
TNRC18	Amp_3q26.33	0.788	1
ZNF709	Del_18q23	0.788	1
ZNF709	Del_22q13.31	0.788	1
Amp_Xp11.22	Del_10q26.3	0.788	1
ANKRD36	Amp_1q32.1	0.789	1
ATRX	Amp_7q32.3	0.789	1
ATRX	Del_6q26	0.789	1
CREBZF	Amp_1q32.1	0.789	1
FAM47C	Del_11p15.5	0.789	1
R3HDM1	Amp_1q32.1	0.789	1
RBPJ	Amp_1q32.1	0.789	1
RET	Amp_1q32.1	0.789	1
SLC12A7	Amp_1q32.1	0.789	1
9p-Del	Del_18q23	0.789	1
Amp_1q32.1	Amp_2p24.3	0.789	1
KRAS	10q-Del	0.79	1
ABCA7	PIK3CA	0.791	1
DNMT3A	14q-Del	0.791	1
MYST4	14q-Del	0.791	1
PIK3CA	STK19	0.791	1
PIK3CA	Amp_7p11.2	0.791	1
PLXNA3	Del_6q26	0.791	1
ZMIZ1	Del_6q26	0.791	1
14q-Del	Amp_13q34	0.791	1
1p-Del	Amp_19p13.3	0.791	1
4p-Del	Amp_17q25.1	0.791	1
4p-Del	Del_3q29	0.791	1
DLX6	4q-Del	0.792	1
ELF4	4q-Del	0.792	1
KRT3	4q-Del	0.792	1
NAP1L2	4q-Del	0.792	1
PLXNA3	Amp_Xp11.22	0.792	1
PLXNA3	Del_Xq21.1	0.792	1
SLC6A3	Amp_Xp11.22	0.792	1
SLC6A3	Del_Xq21.1	0.792	1
SRPX	4q-Del	0.792	1
ZMIZ1	Amp_Xp11.22	0.792	1
ZMIZ1	Del_Xq21.1	0.792	1
C14orf4	11p-Del	0.793	1
C14orf4	Amp_10p15.3	0.793	1
C9orf79	Del_1p36.32	0.793	1
CUL4B	Del_1p36.32	0.793	1
FUBP1	18q-Del	0.793	1
GAGE2A	1p-Del	0.793	1
KRAS	Amp_8q24.13	0.793	1
KRAS	Del_4q34.3	0.793	1
MED9	11p-Del	0.793	1
MED9	Amp_10p15.3	0.793	1
SMOC1	11p-Del	0.793	1
SMOC1	Amp_10p15.3	0.793	1
TMEM216	11p-Del	0.793	1
TMEM216	Amp_10p15.3	0.793	1
ZNF709	Amp_10p15.3	0.793	1
10p-Amp	7p-Amp	0.793	1
13q-Del	18q-Del	0.793	1
18q-Del	Del_6q22.31	0.793	1
EMG1	Del_6p25.3	0.794	1
ENGASE	Del_6p25.3	0.794	1
NOTCH1	4q-Del	0.794	1
ROBO3	Del_1p36.32	0.794	1
ROBO3	Del_6p25.3	0.794	1
TCF12	4q-Del	0.794	1
ZNF512B	Del_6p25.3	0.794	1
7p-Amp	Del_4q34.3	0.794	1
15q-Del	4q-Del	0.794	1
IDH2	7p-Amp	0.795	1
Amp_7p11.2	Amp_10p15.3	0.795	1
Del_14q24.3	Del_18q23	0.795	1
ARID1A	PLCG1	0.796	1
C4BPA	Amp_4q12	0.796	1
C4BPA	Del_5q34	0.796	1
DLC1	Amp_4q12	0.796	1
DLC1	Del_5q34	0.796	1
FAM47C	PLCG1	0.796	1
G6PC	Amp_4q12	0.796	1
MYT1	Amp_4q12	0.796	1
NEU2	Amp_4q12	0.796	1
NEU2	Del_5q34	0.796	1
NIPBL	PTEN	0.796	1
NIPBL	Amp_12q14.1	0.796	1
PIK3CA	10q-Del	0.796	1
PLCG1	Amp_4q12	0.796	1
PLCG1	Del_5q34	0.796	1
PPL	Amp_4q12	0.796	1
PPL	Del_5q34	0.796	1
RB1	Amp_4q12	0.796	1
RB1	Del_5q34	0.796	1
TRERF1	Amp_4q12	0.796	1
TRERF1	Del_5q34	0.796	1
C9orf79	Del_1p32.3	0.797	1
ROBO3	Del_1p32.3	0.797	1
10p-Amp	11q-Amp	0.797	1
10p-Del	15q-Del	0.797	1
Del_8q24.3	Del_12q12	0.797	1
CIB1	18p-Del	0.798	1
CIB1	Amp_11q24.1	0.798	1
DLX6	18p-Del	0.798	1
DLX6	Amp_11q24.1	0.798	1
EGFR	Del_6p25.3	0.798	1
ELF4	18p-Del	0.798	1
ELF4	Amp_11q24.1	0.798	1
GAGE2A	10p-Del	0.798	1
KRT3	18p-Del	0.798	1
KRT3	Amp_11q24.1	0.798	1
NAP1L2	18p-Del	0.798	1
NAP1L2	Amp_11q24.1	0.798	1
NRAS	18p-Del	0.798	1
NRAS	Amp_11q24.1	0.798	1
SMARCB1	18p-Del	0.798	1
SMARCB1	Amp_11q24.1	0.798	1
SRPX	18p-Del	0.798	1
SRPX	Amp_11q24.1	0.798	1
ZMIZ1	Del_11p15.1	0.798	1
10p-Del	Xp-Del	0.798	1
ARID2	Del_22q13.31	0.799	1
DNMT3A	Del_18q23	0.799	1
NF1	Amp_Xp11.22	0.799	1
SETD2	Del_2q37.3	0.799	1
6q-Del	Amp_Xp11.22	0.799	1
Amp_12p13.32	Amp_Xp11.22	0.799	1
Amp_12p13.32	Del_Xq21.1	0.799	1
Del_8q24.3	Del_14q24.3	0.799	1
ANKRD36	11q-Amp	0.8	1
ANKRD36	Del_8q24.3	0.8	1
CREBZF	11q-Amp	0.8	1
CREBZF	Del_8q24.3	0.8	1
GAGE2A	ZNF292	0.8	1
IRS4	Del_3q13.31	0.8	1
KRAS	10p-Del	0.8	1
PTPN11	11q-Amp	0.8	1
R3HDM1	11q-Amp	0.8	1
RBPJ	11q-Amp	0.8	1
RBPJ	Del_8q24.3	0.8	1
RET	11q-Amp	0.8	1
RET	Del_8q24.3	0.8	1
SLC12A7	11q-Amp	0.8	1
SLC12A7	Del_8q24.3	0.8	1
ZNF292	Xp-Del	0.8	1
11q-Amp	Amp_2p24.3	0.8	1
7q-Amp	Del_2q37.3	0.8	1
12q-Del	Xp-Del	0.8	1
Amp_2p24.3	Del_8q24.3	0.8	1
FAM47C	1p-Del	0.801	1
ANKRD36	7p-Amp	0.802	1
ATRX	Amp_7q31.2	0.802	1
BRAF	4p-Del	0.802	1
EMG1	4p-Del	0.802	1
ENGASE	4p-Del	0.802	1
HTRA2	PIK3R1	0.802	1
PIK3R1	ROBO3	0.802	1
PIK3R1	Xq-Del	0.802	1
R3HDM1	7p-Amp	0.802	1
RET	7p-Amp	0.802	1
ROBO3	4p-Del	0.802	1
TP53	11q-Amp	0.802	1
ZNF512B	4p-Del	0.802	1
7p-Amp	Amp_2p24.3	0.802	1
4p-Del	Xq-Del	0.802	1
Amp_1q32.1	Del_6q22.31	0.802	1
7q-Amp	22q-Del	0.803	1
ABCA7	Amp_13q34	0.804	1
ABCA7	Del_7p22.3	0.804	1
ARID2	Amp_1q22	0.804	1
C9orf79	Amp_13q34	0.804	1
C9orf79	Del_7p22.3	0.804	1
CUL4B	Amp_13q34	0.804	1
CUL4B	Del_7p22.3	0.804	1
FUBP1	ZMIZ1	0.804	1
MYST4	Amp_1q22	0.804	1
NUDT11	Amp_1q22	0.804	1
PDGFRA	Amp_13q34	0.804	1
PDGFRA	Del_7p22.3	0.804	1
PLXNA3	13q-Del	0.804	1
PLXNA3	Del_6q22.31	0.804	1
PRX	Amp_13q34	0.804	1
PRX	Del_7p22.3	0.804	1
SETD2	Amp_13q34	0.804	1
SETD2	Del_7p22.3	0.804	1
STK19	Amp_13q34	0.804	1
TNRC18	Amp_13q34	0.804	1
TNRC18	Del_7p22.3	0.804	1
ZMIZ1	Del_6q22.31	0.804	1
10q-Del	Del_3q13.31	0.804	1
Amp_1q22	Amp_13q34	0.804	1
Amp_1q22	Del_7p22.3	0.804	1
CIB1	10p-Amp	0.805	1
CIB1	Del_12q12	0.805	1
DLX6	10p-Amp	0.805	1
DLX6	Del_12q12	0.805	1
ELF4	10p-Amp	0.805	1
ELF4	Del_12q12	0.805	1
ENGASE	19q-Del	0.805	1
HTRA2	19q-Del	0.805	1
IDH2	ZBTB20	0.805	1
IRS4	Amp_7q32.3	0.805	1
KRT3	Del_12q12	0.805	1
NAP1L2	10p-Amp	0.805	1
NAP1L2	Del_12q12	0.805	1
NRAS	Del_12q12	0.805	1
ROBO3	19q-Del	0.805	1
SLC12A7	Del_9p21.3	0.805	1
SMARCB1	Del_12q12	0.805	1
SRPX	10p-Amp	0.805	1
SRPX	Del_12q12	0.805	1
TCF12	Amp_11q24.1	0.805	1
TCF12	Del_1p36.32	0.805	1
ZBTB20	Del_3q29	0.805	1
8q-Amp	Amp_12p13.32	0.805	1
15q-Del	Amp_11q24.1	0.805	1
6q-Del	Del_3p21.31	0.805	1
9q-Del	Del_1p36.32	0.805	1
Amp_7q31.2	Amp_Xp11.22	0.805	1
Amp_12p13.32	Amp_12q14.1	0.805	1
ABCA7	NOTCH1	0.806	1
C9orf79	NOTCH1	0.806	1
CUL4B	NOTCH1	0.806	1
NIPBL	PIK3CA	0.806	1
NIPBL	PLCG1	0.806	1
NOTCH1	PDGFRA	0.806	1
NOTCH1	SETD2	0.806	1
NOTCH1	TNRC18	0.806	1
DNMT3A	11p-Del	0.807	1
FAM47C	PIK3R1	0.807	1
MYST4	Amp_10p15.3	0.807	1
NUDT11	Amp_10p15.3	0.807	1
PIK3R1	Del_5q34	0.807	1
PLXNA3	Amp_3q26.33	0.807	1
SLC6A3	19p-Amp	0.807	1
SLC6A3	Amp_3q26.33	0.807	1
ZMIZ1	19p-Amp	0.807	1
ZMIZ1	Amp_3q26.33	0.807	1
11p-Del	Del_7p22.3	0.807	1
4p-Del	Amp_4q12	0.807	1
C9orf79	19q-Del	0.808	1
18q-Del	Del_8q24.3	0.808	1
22q-Del	Del_8q24.3	0.808	1
Amp_7q31.2	Del_4q34.3	0.808	1
C14orf4	EGFR	0.809	1
EGFR	MED9	0.809	1
EGFR	SMOC1	0.809	1
EGFR	TMEM216	0.809	1
EGFR	ZNF709	0.809	1
PIK3CA	Del_4q34.3	0.809	1
TCF12	Del_1p32.3	0.809	1
18p-Del	Amp_11q24.1	0.809	1
BRAF	Del_9p23	0.81	1
EMG1	Del_9p23	0.81	1
ROBO3	Del_9p23	0.81	1
ZNF512B	Del_9p23	0.81	1
4q-Del	Del_12q12	0.81	1
ANKRD36	TCF12	0.811	1
ANKRD36	15q-Del	0.811	1
ANKRD36	9q-Del	0.811	1
CREBZF	TCF12	0.811	1
CREBZF	15q-Del	0.811	1
EMG1	ZBTB20	0.811	1
HTRA2	ZBTB20	0.811	1
PRX	7q-Amp	0.811	1
PTPN11	TCF12	0.811	1
PTPN11	15q-Del	0.811	1
PTPN11	9q-Del	0.811	1
R3HDM1	TCF12	0.811	1
R3HDM1	15q-Del	0.811	1
R3HDM1	9q-Del	0.811	1
RBPJ	TCF12	0.811	1
RBPJ	15q-Del	0.811	1
RET	TCF12	0.811	1
RET	15q-Del	0.811	1
RET	9q-Del	0.811	1
ROBO3	ZBTB20	0.811	1
SETD2	7q-Amp	0.811	1
SLC12A7	TCF12	0.811	1
SLC12A7	9q-Del	0.811	1
TCF12	Amp_2p24.3	0.811	1
TNRC18	7q-Amp	0.811	1
ZBTB20	Xq-Del	0.811	1
ZNF292	Amp_8q24.13	0.811	1
11q-Amp	Amp_7q32.3	0.811	1
7q-Amp	Amp_1q22	0.811	1
12q-Del	Amp_8q24.13	0.811	1
12q-Del	Del_4q34.3	0.811	1
13q-Del	Del_2q37.3	0.811	1
15q-Del	Amp_2p24.3	0.811	1
9q-Del	Amp_2p24.3	0.811	1
Amp_7q32.3	Del_8q24.3	0.811	1
Del_3q13.31	Del_4q34.3	0.811	1
CIB1	SMARCA4	0.812	1
CIB1	18q-Del	0.812	1
DLX6	18q-Del	0.812	1
DLX6	22q-Del	0.812	1
ELF4	18q-Del	0.812	1
ELF4	22q-Del	0.812	1
KRT3	SMARCA4	0.812	1
KRT3	18q-Del	0.812	1
KRT3	22q-Del	0.812	1
NAP1L2	SMARCA4	0.812	1
NAP1L2	18q-Del	0.812	1
NAP1L2	22q-Del	0.812	1
NRAS	SMARCA4	0.812	1
NRAS	18q-Del	0.812	1
SMARCA4	SRPX	0.812	1
SMARCB1	18q-Del	0.812	1
SMARCB1	22q-Del	0.812	1
SRPX	18q-Del	0.812	1
SRPX	22q-Del	0.812	1
FUBP1	Amp_19p13.3	0.813	1
GAGE2A	Del_Xq21.1	0.813	1
IRS4	Amp_Xp11.22	0.813	1
IRS4	Del_Xq21.1	0.813	1
KRAS	Del_19q13.42	0.813	1
7q-Amp	9q-Del	0.813	1
Xp-Del	Amp_Xp11.22	0.813	1
Amp_7q32.3	Del_4q34.3	0.813	1
Del_5p15.33	Del_6q26	0.813	1
NF1	7p-Amp	0.814	1
SMARCA4	7p-Amp	0.815	1
Amp_3q26.33	Del_11p15.5	0.815	1
Del_13q14.2	Del_14q24.3	0.815	1
C9orf79	Amp_7p11.2	0.816	1
MYT1	Amp_1q32.1	0.816	1
NEU2	Amp_1q32.1	0.816	1
PDGFRA	Amp_7p11.2	0.816	1
PPL	Amp_1q32.1	0.816	1
TCF12	10p-Amp	0.816	1
TNRC18	Amp_7p11.2	0.816	1
TRERF1	Amp_1q32.1	0.816	1
10p-Amp	9q-Del	0.816	1
7p-Amp	14q-Del	0.816	1
11p-Del	Del_14q24.3	0.816	1
12q-Del	4q-Del	0.816	1
15q-Del	Del_12q12	0.816	1
Amp_1q22	Amp_7p11.2	0.816	1
Amp_8q24.13	Del_9p23	0.816	1
Del_6q26	Del_13q14.2	0.816	1
ARID2	CIC	0.817	1
CIC	DNMT3A	0.817	1
G6PC	Del_13q14.2	0.817	1
MYT1	Del_13q14.2	0.817	1
PLCG1	Del_13q14.2	0.817	1
TRERF1	Del_13q14.2	0.817	1
CIB1	Amp_19p13.3	0.818	1
DLX6	Amp_19p13.3	0.818	1
ELF4	Amp_19p13.3	0.818	1
IDH2	Amp_7q32.3	0.818	1
KRAS	Del_6q26	0.818	1
KRT3	Amp_19p13.3	0.818	1
NRAS	Amp_19p13.3	0.818	1
SMARCB1	Amp_19p13.3	0.818	1
SRPX	Amp_19p13.3	0.818	1
14q-Del	4q-Del	0.818	1
Del_2q37.3	Del_12q12	0.818	1
BRAF	IDH2	0.819	1
BRAF	Amp_17q25.1	0.819	1
BRAF	Del_3q29	0.819	1
C14orf4	Amp_12p13.32	0.819	1
EMG1	IDH2	0.819	1
EMG1	Amp_17q25.1	0.819	1
ENGASE	IDH2	0.819	1
ENGASE	Amp_17q25.1	0.819	1
ENGASE	Del_3q29	0.819	1
HTRA2	Amp_17q25.1	0.819	1
IDH2	ROBO3	0.819	1
IDH2	ZNF512B	0.819	1
IDH2	Xq-Del	0.819	1
MED9	Amp_12p13.32	0.819	1
NF1	SMOC1	0.819	1
NF1	TMEM216	0.819	1
NOTCH1	Amp_7q32.3	0.819	1
ROBO3	Amp_17q25.1	0.819	1
ROBO3	Del_3q29	0.819	1
SMOC1	Amp_12p13.32	0.819	1
TMEM216	6q-Del	0.819	1
TMEM216	Amp_12p13.32	0.819	1
ZNF709	6q-Del	0.819	1
ZNF709	Amp_12p13.32	0.819	1
11q-Amp	Del_11p15.1	0.819	1
15q-Del	Amp_7p11.2	0.819	1
9p-Del	Del_11p15.5	0.819	1
Xq-Del	Amp_17q25.1	0.819	1
C9orf79	Amp_1q22	0.82	1
CUL4B	Amp_1q22	0.82	1
FAM47C	ZBTB20	0.82	1
PDGFRA	Amp_1q22	0.82	1
PRX	Amp_1q22	0.82	1
SETD2	Amp_1q22	0.82	1
STK19	Amp_1q22	0.82	1
TNRC18	Amp_1q22	0.82	1
11q-Amp	Amp_19p13.3	0.82	1
Amp_17q25.1	Del_3q29	0.82	1
C9orf79	14q-Del	0.821	1
CUL4B	14q-Del	0.821	1
FAM47C	7p-Amp	0.821	1
KRAS	Del_11p15.1	0.821	1
PDGFRA	14q-Del	0.821	1
PLXNA3	Amp_13q34	0.821	1
PLXNA3	Del_7p22.3	0.821	1
SLC6A3	Amp_13q34	0.821	1
SLC6A3	Del_7p22.3	0.821	1
TNRC18	14q-Del	0.821	1
ZMIZ1	Amp_13q34	0.821	1
ZMIZ1	Del_7p22.3	0.821	1
7p-Amp	Amp_4q12	0.821	1
14q-Del	Amp_1q22	0.821	1
Amp_8q24.13	Amp_11q24.1	0.821	1
11p-Del	Amp_17q25.1	0.822	1
14q-Del	Amp_4q12	0.822	1
14q-Del	Del_5q34	0.822	1
Amp_12p13.32	Del_6p25.3	0.822	1
ANKRD36	ZNF292	0.823	1
ANKRD36	10q-Del	0.823	1
ANKRD36	12q-Del	0.823	1
CREBZF	12q-Del	0.823	1
CREBZF	Del_3q13.31	0.823	1
NF1	Amp_3q26.33	0.823	1
PTPN11	ZNF292	0.823	1
PTPN11	12q-Del	0.823	1
PTPN11	Del_3q13.31	0.823	1
R3HDM1	12q-Del	0.823	1
RBPJ	ZNF292	0.823	1
RBPJ	12q-Del	0.823	1
RBPJ	Del_3q13.31	0.823	1
RET	12q-Del	0.823	1
RET	Del_3q13.31	0.823	1
SLC12A7	10q-Del	0.823	1
SLC12A7	12q-Del	0.823	1
SLC12A7	Del_3q13.31	0.823	1
TCF12	19q-Del	0.823	1
ZNF292	Amp_2p24.3	0.823	1
12q-Del	Amp_2p24.3	0.823	1
Amp_2p24.3	Del_3q13.31	0.823	1
PIK3CA	PLXNA3	0.824	1
CIB1	PTEN	0.825	1
CIB1	Amp_7q32.3	0.825	1
CIB1	Amp_12q14.1	0.825	1
CIB1	Del_3p21.31	0.825	1
CIB1	Del_5p15.33	0.825	1
DLX6	8q-Amp	0.825	1
DLX6	Amp_7q32.3	0.825	1
DLX6	Amp_12q14.1	0.825	1
DLX6	Del_3p21.31	0.825	1
DLX6	Del_5p15.33	0.825	1
ELF4	8q-Amp	0.825	1
ELF4	Amp_7q32.3	0.825	1
ELF4	Amp_12q14.1	0.825	1
ELF4	Del_3p21.31	0.825	1
ELF4	Del_5p15.33	0.825	1
FUBP1	KRAS	0.825	1
KRAS	13q-Del	0.825	1
KRAS	Del_6q22.31	0.825	1
KRT3	PTEN	0.825	1
KRT3	Del_3p21.31	0.825	1
KRT3	Del_5p15.33	0.825	1
NAP1L2	PTEN	0.825	1
NAP1L2	8q-Amp	0.825	1
NAP1L2	Amp_12q14.1	0.825	1
NAP1L2	Del_3p21.31	0.825	1
NAP1L2	Del_5p15.33	0.825	1
NRAS	PTEN	0.825	1
NRAS	8q-Amp	0.825	1
NRAS	Amp_12q14.1	0.825	1
NRAS	Del_5p15.33	0.825	1
PTEN	SRPX	0.825	1
SMARCB1	8q-Amp	0.825	1
SMARCB1	Amp_7q32.3	0.825	1
SMARCB1	Amp_12q14.1	0.825	1
SMARCB1	Del_3p21.31	0.825	1
SMARCB1	Del_5p15.33	0.825	1
SRPX	8q-Amp	0.825	1
SRPX	Amp_7q32.3	0.825	1
SRPX	Amp_12q14.1	0.825	1
SRPX	Del_3p21.31	0.825	1
SRPX	Del_5p15.33	0.825	1
10p-Del	Del_3q13.31	0.825	1
Amp_12q14.1	Del_11p15.5	0.825	1
Del_4q34.3	Del_19q13.42	0.825	1
C4BPA	11q-Amp	0.826	1
C4BPA	Del_8q24.3	0.826	1
DLC1	11q-Amp	0.826	1
DLC1	Del_8q24.3	0.826	1
G6PC	11q-Amp	0.826	1
G6PC	Del_8q24.3	0.826	1
GAGE2A	19p-Amp	0.826	1
GAGE2A	Amp_3q26.33	0.826	1
IRS4	19p-Amp	0.826	1
MYT1	11q-Amp	0.826	1
MYT1	Del_8q24.3	0.826	1
NEU2	11q-Amp	0.826	1
NEU2	Del_8q24.3	0.826	1
PLCG1	11q-Amp	0.826	1
PLCG1	Del_8q24.3	0.826	1
PPL	11q-Amp	0.826	1
RB1	11q-Amp	0.826	1
RB1	Del_8q24.3	0.826	1
TRERF1	11q-Amp	0.826	1
TRERF1	Del_8q24.3	0.826	1
ZNF292	18p-Del	0.826	1
19p-Amp	Xp-Del	0.826	1
13q-Del	6q-Del	0.826	1
Xp-Del	Amp_3q26.33	0.826	1
Xp-Del	Del_10q26.3	0.826	1
Amp_1q32.1	Del_6p25.3	0.826	1
Amp_11q24.1	Del_3q13.31	0.826	1
ARID1A	EMG1	0.827	1
ARID1A	HTRA2	0.827	1
ARID1A	ROBO3	0.827	1
ARID1A	Xq-Del	0.827	1
BRAF	Amp_4q12	0.827	1
BRAF	Del_5q34	0.827	1
CUL4B	Del_14q24.3	0.827	1
EMG1	FAM47C	0.827	1
EMG1	Amp_4q12	0.827	1
EMG1	Del_5q34	0.827	1
ENGASE	Amp_4q12	0.827	1
FAM47C	HTRA2	0.827	1
FAM47C	ROBO3	0.827	1
FAM47C	Xq-Del	0.827	1
HTRA2	TP53	0.827	1
HTRA2	Amp_4q12	0.827	1
HTRA2	Del_5q34	0.827	1
ROBO3	Amp_4q12	0.827	1
ROBO3	Del_5q34	0.827	1
SETD2	Del_14q24.3	0.827	1
SMARCA4	TCF12	0.827	1
TP53	Xq-Del	0.827	1
ZNF512B	Amp_4q12	0.827	1
ZNF512B	Del_5q34	0.827	1
13q-Del	Del_8q24.3	0.827	1
15q-Del	22q-Del	0.827	1
18q-Del	Amp_7q31.2	0.827	1
Xq-Del	Amp_4q12	0.827	1
Xq-Del	Del_5q34	0.827	1
Amp_1q22	Del_14q24.3	0.827	1
Amp_7p11.2	Del_3q29	0.827	1
Amp_7q32.3	Del_3p21.31	0.827	1
Amp_7q32.3	Del_5p15.33	0.827	1
ABCA7	Del_18q23	0.828	1
ANKRD36	Del_4q34.3	0.828	1
C9orf79	Del_22q13.31	0.828	1
CREBZF	Amp_8q24.13	0.828	1
CUL4B	Del_18q23	0.828	1
PDGFRA	Del_18q23	0.828	1
PRX	Del_22q13.31	0.828	1
RET	Del_4q34.3	0.828	1
SLC12A7	Del_4q34.3	0.828	1
STK19	Del_18q23	0.828	1
10q-Del	Del_3q29	0.828	1
Amp_1q22	Del_18q23	0.828	1
Amp_2p24.3	Amp_8q24.13	0.828	1
Amp_2p24.3	Del_4q34.3	0.828	1
BRAF	7q-Amp	0.829	1
EMG1	7q-Amp	0.829	1
ENGASE	7q-Amp	0.829	1
HTRA2	7q-Amp	0.829	1
ZNF512B	7q-Amp	0.829	1
ANKRD36	IDH1	0.83	1
SLC6A3	Del_2q37.3	0.83	1
ZMIZ1	Del_2q37.3	0.83	1
4q-Del	Del_18q23	0.83	1
4q-Del	Del_22q13.31	0.83	1
ARID1A	Del_18q23	0.831	1
C4BPA	Del_11p15.5	0.831	1
CUL4B	Del_9p21.3	0.831	1
DLC1	9p-Del	0.831	1
DNMT3A	EGFR	0.831	1
EGFR	NUDT11	0.831	1
G6PC	9p-Del	0.831	1
G6PC	Del_11p15.5	0.831	1
MYT1	9p-Del	0.831	1
MYT1	Del_11p15.5	0.831	1
PRX	Del_9p21.3	0.831	1
PTEN	Del_8q24.3	0.831	1
RB1	9p-Del	0.831	1
RET	Del_1p36.32	0.831	1
SLC12A7	Del_1p36.32	0.831	1
STK19	Del_9p21.3	0.831	1
TP53	Del_6p25.3	0.831	1
TRERF1	9p-Del	0.831	1
11q-Amp	8q-Amp	0.831	1
8q-Amp	Del_8q24.3	0.831	1
15q-Del	Del_14q24.3	0.831	1
9q-Del	Del_14q24.3	0.831	1
Amp_12q14.1	Del_8q24.3	0.831	1
Del_9p23	Del_18q23	0.831	1
BRAF	Amp_7p11.2	0.832	1
CIB1	Del_6p25.3	0.832	1
DLX6	Del_6p25.3	0.832	1
ELF4	Del_6p25.3	0.832	1
EMG1	Amp_7p11.2	0.832	1
ENGASE	Amp_7p11.2	0.832	1
HTRA2	Amp_7p11.2	0.832	1
MYST4	Del_13q14.2	0.832	1
NAP1L2	Del_6p25.3	0.832	1
NRAS	Del_6p25.3	0.832	1
SMARCB1	Del_6p25.3	0.832	1
SRPX	Del_6p25.3	0.832	1
ZNF512B	Amp_7p11.2	0.832	1
Xq-Del	Amp_7p11.2	0.832	1
ARID1A	IDH1	0.833	1
GAGE2A	Del_11p15.1	0.833	1
ARID1A	IDH2	0.834	1
FAM47C	Del_3q29	0.834	1
PIK3CA	10p-Del	0.834	1
Amp_4q12	Amp_17q25.1	0.834	1
ABCA7	11p-Del	0.835	1
ANKRD36	Amp_Xp11.22	0.835	1
ANKRD36	Del_Xq21.1	0.835	1
C9orf79	11p-Del	0.835	1
CIC	RET	0.835	1
CREBZF	Amp_Xp11.22	0.835	1
CREBZF	Del_Xq21.1	0.835	1
NIPBL	ZBTB20	0.835	1
PDGFRA	Amp_10p15.3	0.835	1
PTPN11	Amp_Xp11.22	0.835	1
PTPN11	Del_Xq21.1	0.835	1
R3HDM1	Amp_Xp11.22	0.835	1
R3HDM1	Del_Xq21.1	0.835	1
RBPJ	Amp_Xp11.22	0.835	1
RBPJ	Del_Xq21.1	0.835	1
RET	Amp_Xp11.22	0.835	1
RET	Del_Xq21.1	0.835	1
SETD2	11p-Del	0.835	1
SETD2	Amp_10p15.3	0.835	1
SLC12A7	Amp_Xp11.22	0.835	1
SLC12A7	Del_Xq21.1	0.835	1
SMARCA4	Del_2q37.3	0.835	1
TNRC18	Amp_10p15.3	0.835	1
15q-Del	Del_6q26	0.835	1
Amp_2p24.3	Amp_Xp11.22	0.835	1
Amp_2p24.3	Del_Xq21.1	0.835	1
C4BPA	TCF12	0.836	1
C4BPA	15q-Del	0.836	1
C4BPA	9q-Del	0.836	1
DLC1	15q-Del	0.836	1
DLC1	9q-Del	0.836	1
EMG1	NIPBL	0.836	1
G6PC	15q-Del	0.836	1
G6PC	9q-Del	0.836	1
HTRA2	NIPBL	0.836	1
KRAS	PIK3CA	0.836	1
MYT1	15q-Del	0.836	1
MYT1	9q-Del	0.836	1
NEU2	TCF12	0.836	1
NEU2	15q-Del	0.836	1
NIPBL	ROBO3	0.836	1
NIPBL	Xq-Del	0.836	1
PLCG1	TCF12	0.836	1
PLCG1	15q-Del	0.836	1
PLCG1	9q-Del	0.836	1
PLXNA3	Amp_1q22	0.836	1
PPL	TCF12	0.836	1
PPL	15q-Del	0.836	1
PPL	9q-Del	0.836	1
RB1	TCF12	0.836	1
RB1	15q-Del	0.836	1
RB1	9q-Del	0.836	1
SLC6A3	Amp_1q22	0.836	1
TRERF1	15q-Del	0.836	1
ZMIZ1	Amp_1q22	0.836	1
ZNF292	10p-Amp	0.836	1
10p-Amp	12q-Del	0.836	1
18p-Del	Amp_7q32.3	0.836	1
4q-Del	Del_Xq21.1	0.836	1
Amp_17q25.1	Del_4q34.3	0.836	1
ATRX	CIB1	0.837	1
ATRX	DLX6	0.837	1
ATRX	ELF4	0.837	1
ATRX	KRT3	0.837	1
ATRX	NAP1L2	0.837	1
NOTCH1	PLXNA3	0.837	1
NOTCH1	ZMIZ1	0.837	1
13q-Del	Del_1p32.3	0.837	1
ANKRD36	10p-Del	0.838	1
C9orf79	1p-Del	0.838	1
IRS4	Amp_7q31.2	0.838	1
NF1	PIK3R1	0.838	1
PIK3R1	6q-Del	0.838	1
SLC12A7	10p-Del	0.838	1
15q-Del	Amp_19p13.3	0.838	1
4p-Del	Amp_12p13.32	0.838	1
9q-Del	Amp_19p13.3	0.838	1
CIB1	PIK3R1	0.839	1
DLX6	4p-Del	0.839	1
ELF4	4p-Del	0.839	1
ENGASE	Del_14q24.3	0.839	1
FUBP1	GAGE2A	0.839	1
HTRA2	Del_14q24.3	0.839	1
IRS4	13q-Del	0.839	1
KRAS	Del_2q37.3	0.839	1
KRT3	PIK3R1	0.839	1
KRT3	4p-Del	0.839	1
NAP1L2	PIK3R1	0.839	1
NAP1L2	4p-Del	0.839	1
NAP1L2	Del_10q26.3	0.839	1
NRAS	PIK3R1	0.839	1
NRAS	4p-Del	0.839	1
PIK3R1	SRPX	0.839	1
ROBO3	Del_14q24.3	0.839	1
SMARCB1	4p-Del	0.839	1
SRPX	4p-Del	0.839	1
ARID2	Xp-Del	0.84	1
C14orf4	4q-Del	0.84	1
GAGE2A	MYST4	0.84	1
GAGE2A	NUDT11	0.84	1
GAGE2A	Amp_13q34	0.84	1
IRS4	Del_7p22.3	0.84	1
MED9	4q-Del	0.84	1
MYST4	Xp-Del	0.84	1
NUDT11	Xp-Del	0.84	1
SMOC1	4q-Del	0.84	1
ZNF709	4q-Del	0.84	1
Xp-Del	Amp_13q34	0.84	1
Amp_Xp11.22	Del_4q34.3	0.84	1
Del_4q34.3	Del_12q12	0.84	1
ARID1A	Amp_10p15.3	0.841	1
ATRX	C4BPA	0.841	1
ATRX	MYT1	0.841	1
ATRX	NEU2	0.841	1
FAM47C	11p-Del	0.841	1
1p-Del	Del_4q34.3	0.841	1
IDH1	Del_4q34.3	0.842	1
11q-Amp	Del_6p25.3	0.842	1
KRAS	NOTCH1	0.843	1
PIK3CA	Amp_19p13.3	0.843	1
BRAF	Amp_1q32.1	0.844	1
EMG1	Amp_1q32.1	0.844	1
ENGASE	Amp_1q32.1	0.844	1
HTRA2	Amp_1q32.1	0.844	1
ROBO3	Amp_1q32.1	0.844	1
ZNF512B	Amp_1q32.1	0.844	1
Del_6q26	Del_18q23	0.844	1
C14orf4	18p-Del	0.845	1
C14orf4	Amp_11q24.1	0.845	1
MED9	18p-Del	0.845	1
MED9	Amp_11q24.1	0.845	1
NIPBL	7p-Amp	0.845	1
SMARCA4	ZNF292	0.845	1
SMARCA4	Del_3q13.31	0.845	1
SMOC1	18p-Del	0.845	1
SMOC1	Amp_11q24.1	0.845	1
TMEM216	18p-Del	0.845	1
TMEM216	Amp_11q24.1	0.845	1
ZNF292	18q-Del	0.845	1
ZNF709	18p-Del	0.845	1
ZNF709	Amp_11q24.1	0.845	1
12q-Del	22q-Del	0.845	1
18p-Del	Del_22q13.31	0.845	1
18q-Del	Del_3q13.31	0.845	1
Amp_11q24.1	Amp_Xp11.22	0.845	1
Amp_11q24.1	Del_18q23	0.845	1
ANKRD36	19p-Amp	0.846	1
ATRX	SMARCA4	0.846	1
C4BPA	12q-Del	0.846	1
C4BPA	Del_3q13.31	0.846	1
CIB1	ZBTB20	0.846	1
CREBZF	19p-Amp	0.846	1
CREBZF	Amp_3q26.33	0.846	1
DLC1	12q-Del	0.846	1
DLC1	Del_3q13.31	0.846	1
G6PC	12q-Del	0.846	1
G6PC	Del_3q13.31	0.846	1
KRT3	ZBTB20	0.846	1
MYT1	Del_3q13.31	0.846	1
NAP1L2	ZBTB20	0.846	1
NEU2	12q-Del	0.846	1
NRAS	ZBTB20	0.846	1
PLCG1	ZNF292	0.846	1
PLCG1	12q-Del	0.846	1
PLCG1	Del_3q13.31	0.846	1
PPL	12q-Del	0.846	1
PPL	Del_3q13.31	0.846	1
PTPN11	19p-Amp	0.846	1
R3HDM1	19p-Amp	0.846	1
R3HDM1	Amp_3q26.33	0.846	1
RB1	12q-Del	0.846	1
RB1	Del_3q13.31	0.846	1
RBPJ	19p-Amp	0.846	1
RBPJ	Amp_3q26.33	0.846	1
RET	19p-Amp	0.846	1
RET	Amp_3q26.33	0.846	1
SLC12A7	Amp_3q26.33	0.846	1
SRPX	ZBTB20	0.846	1
TRERF1	12q-Del	0.846	1
TRERF1	Del_3q13.31	0.846	1
19p-Amp	Amp_2p24.3	0.846	1
Amp_2p24.3	Amp_3q26.33	0.846	1
Amp_7p11.2	Del_14q24.3	0.846	1
Del_11p15.1	Del_14q24.3	0.846	1
ARID1A	FAM47C	0.847	1
ARID2	6q-Del	0.847	1
DNMT3A	6q-Del	0.847	1
DNMT3A	Amp_12p13.32	0.847	1
FAM47C	7q-Amp	0.847	1
FAM47C	Amp_4q12	0.847	1
FAM47C	Del_5q34	0.847	1
MYST4	NF1	0.847	1
NF1	NUDT11	0.847	1
NF1	Del_7p22.3	0.847	1
NUDT11	Amp_12p13.32	0.847	1
6q-Del	Amp_13q34	0.847	1
Del_6q22.31	Del_13q14.2	0.847	1
ABCA7	TP53	0.848	1
C4BPA	7p-Amp	0.848	1
C9orf79	TP53	0.848	1
DLX6	Amp_7q31.2	0.848	1
DNMT3A	Del_11p15.5	0.848	1
ELF4	Amp_7q31.2	0.848	1
G6PC	7p-Amp	0.848	1
NEU2	7p-Amp	0.848	1
PLCG1	7p-Amp	0.848	1
PPL	7p-Amp	0.848	1
PRX	TP53	0.848	1
PTEN	TCF12	0.848	1
PTEN	9q-Del	0.848	1
SMARCB1	Amp_7q31.2	0.848	1
SRPX	Amp_7q31.2	0.848	1
STK19	TP53	0.848	1
TNRC18	TP53	0.848	1
TP53	Amp_1q22	0.848	1
TRERF1	7p-Amp	0.848	1
15q-Del	Del_3p21.31	0.848	1
15q-Del	Del_5p15.33	0.848	1
18p-Del	Del_13q14.2	0.848	1
9q-Del	Amp_12q14.1	0.848	1
Amp_7q32.3	Del_7p22.3	0.848	1
ATRX	GAGE2A	0.849	1
ZMIZ1	14q-Del	0.849	1
7p-Amp	Amp_10p15.3	0.849	1
C14orf4	10p-Amp	0.85	1
C14orf4	Del_12q12	0.85	1
FUBP1	9q-Del	0.85	1
KRAS	14q-Del	0.85	1
MED9	10p-Amp	0.85	1
MED9	Del_12q12	0.85	1
NIPBL	Del_18q23	0.85	1
PIK3CA	11q-Amp	0.85	1
SMOC1	10p-Amp	0.85	1
SMOC1	Del_12q12	0.85	1
TMEM216	10p-Amp	0.85	1
ZNF709	10p-Amp	0.85	1
ZNF709	Del_12q12	0.85	1
10p-Amp	22q-Del	0.85	1
11p-Del	Del_9p23	0.85	1
13q-Del	15q-Del	0.85	1
14q-Del	Del_12q12	0.85	1
15q-Del	Del_6q22.31	0.85	1
22q-Del	Del_12q12	0.85	1
9q-Del	Del_6q22.31	0.85	1
EGFR	Amp_17q25.1	0.851	1
10p-Del	Del_3q29	0.851	1
Amp_11q24.1	Amp_19p13.3	0.851	1
Del_8q24.3	Del_13q14.2	0.851	1
7q-Amp	Del_5p15.33	0.852	1
Amp_Xp11.22	Del_9p23	0.852	1
Del_9p23	Del_Xq21.1	0.852	1
ABCA7	GAGE2A	0.853	1
ABCA7	Xp-Del	0.853	1
BRAF	11q-Amp	0.853	1
BRAF	Del_8q24.3	0.853	1
C9orf79	Xp-Del	0.853	1
CIB1	Amp_17q25.1	0.853	1
CUL4B	GAGE2A	0.853	1
CUL4B	Xp-Del	0.853	1
DLX6	IDH2	0.853	1
DLX6	Amp_17q25.1	0.853	1
DLX6	Del_3q29	0.853	1
ELF4	IDH2	0.853	1
ELF4	Amp_17q25.1	0.853	1
ELF4	Del_3q29	0.853	1
EMG1	11q-Amp	0.853	1
EMG1	Del_8q24.3	0.853	1
ENGASE	11q-Amp	0.853	1
ENGASE	Del_8q24.3	0.853	1
GAGE2A	PDGFRA	0.853	1
GAGE2A	PRX	0.853	1
GAGE2A	SETD2	0.853	1
GAGE2A	STK19	0.853	1
GAGE2A	TNRC18	0.853	1
GAGE2A	Amp_1q22	0.853	1
HTRA2	11q-Amp	0.853	1
IDH2	KRT3	0.853	1
IDH2	NRAS	0.853	1
IDH2	SMARCB1	0.853	1
IDH2	SRPX	0.853	1
KRT3	Del_3q29	0.853	1
NAP1L2	Amp_17q25.1	0.853	1
NAP1L2	Del_3q29	0.853	1
NRAS	Amp_17q25.1	0.853	1
PDGFRA	Xp-Del	0.853	1
PIK3R1	11q-Amp	0.853	1
PIK3R1	Del_8q24.3	0.853	1
ROBO3	11q-Amp	0.853	1
ROBO3	Del_8q24.3	0.853	1
SETD2	Xp-Del	0.853	1
SMARCB1	Amp_17q25.1	0.853	1
SMARCB1	Del_3q29	0.853	1
SRPX	Amp_17q25.1	0.853	1
SRPX	Del_3q29	0.853	1
STK19	Xp-Del	0.853	1
TNRC18	Xp-Del	0.853	1
ZNF512B	11q-Amp	0.853	1
ZNF512B	Del_8q24.3	0.853	1
11q-Amp	4p-Del	0.853	1
11q-Amp	Xq-Del	0.853	1
8q-Amp	4q-Del	0.853	1
Xp-Del	Amp_1q22	0.853	1
ATRX	Del_6q22.31	0.854	1
KRAS	Del_22q13.31	0.854	1
11q-Amp	Amp_7q31.2	0.854	1
Amp_7q31.2	Del_8q24.3	0.854	1
Amp_Xp11.22	Del_12q12	0.854	1
C14orf4	SMARCA4	0.855	1
C14orf4	18q-Del	0.855	1
C14orf4	22q-Del	0.855	1
GAGE2A	PIK3CA	0.855	1
IDH1	ZNF292	0.855	1
IRS4	PIK3CA	0.855	1
MED9	SMARCA4	0.855	1
MED9	18q-Del	0.855	1
SMARCA4	TMEM216	0.855	1
SMARCA4	ZNF709	0.855	1
SMOC1	18q-Del	0.855	1
SMOC1	22q-Del	0.855	1
TMEM216	18q-Del	0.855	1
TMEM216	22q-Del	0.855	1
ZNF292	Amp_19p13.3	0.855	1
ZNF709	18q-Del	0.855	1
ZNF709	22q-Del	0.855	1
12q-Del	Amp_19p13.3	0.855	1
Amp_19p13.3	Del_3q13.31	0.855	1
C9orf79	EGFR	0.856	1
EGFR	PDGFRA	0.856	1
EGFR	TNRC18	0.856	1
EGFR	Amp_1q22	0.856	1
TCF12	Del_19q13.42	0.856	1
ZMIZ1	Amp_7p11.2	0.856	1
18p-Del	Amp_10p15.3	0.856	1
9q-Del	Del_19q13.42	0.856	1
C4BPA	Amp_Xp11.22	0.857	1
C4BPA	Del_Xq21.1	0.857	1
DLC1	Amp_Xp11.22	0.857	1
DLC1	Del_Xq21.1	0.857	1
G6PC	Amp_Xp11.22	0.857	1
G6PC	Del_Xq21.1	0.857	1
KRAS	11p-Del	0.857	1
KRAS	Amp_10p15.3	0.857	1
MYT1	Amp_Xp11.22	0.857	1
MYT1	Del_Xq21.1	0.857	1
NEU2	Amp_Xp11.22	0.857	1
NEU2	Del_Xq21.1	0.857	1
PLCG1	Amp_Xp11.22	0.857	1
PLCG1	Del_Xq21.1	0.857	1
RB1	Amp_Xp11.22	0.857	1
RB1	Del_Xq21.1	0.857	1
TCF12	1p-Del	0.857	1
TRERF1	Amp_Xp11.22	0.857	1
TRERF1	Del_Xq21.1	0.857	1
1p-Del	9q-Del	0.857	1
Del_2q37.3	Del_8q24.3	0.857	1
ANKRD36	ARID2	0.858	1
ANKRD36	MYST4	0.858	1
ANKRD36	NUDT11	0.858	1
ANKRD36	Amp_13q34	0.858	1
ARID2	CREBZF	0.858	1
ARID2	PTPN11	0.858	1
ARID2	Amp_2p24.3	0.858	1
CREBZF	DNMT3A	0.858	1
CREBZF	NUDT11	0.858	1
CREBZF	Amp_13q34	0.858	1
CREBZF	Del_7p22.3	0.858	1
DNMT3A	PTPN11	0.858	1
DNMT3A	RBPJ	0.858	1
DNMT3A	Amp_2p24.3	0.858	1
MYST4	PTPN11	0.858	1
MYST4	RBPJ	0.858	1
MYST4	Amp_2p24.3	0.858	1
NUDT11	PTPN11	0.858	1
NUDT11	RBPJ	0.858	1
NUDT11	Amp_2p24.3	0.858	1
PTPN11	Amp_13q34	0.858	1
PTPN11	Del_7p22.3	0.858	1
R3HDM1	Amp_13q34	0.858	1
R3HDM1	Del_7p22.3	0.858	1
RBPJ	Amp_13q34	0.858	1
RBPJ	Del_7p22.3	0.858	1
RET	Amp_13q34	0.858	1
RET	Del_7p22.3	0.858	1
SLC12A7	Amp_13q34	0.858	1
SLC12A7	Del_7p22.3	0.858	1
TCF12	Del_6p25.3	0.858	1
TP53	13q-Del	0.858	1
22q-Del	Amp_8q24.13	0.858	1
22q-Del	Del_4q34.3	0.858	1
Amp_2p24.3	Amp_13q34	0.858	1
Amp_4q12	Amp_8q24.13	0.858	1
ANKRD36	Amp_7q32.3	0.859	1
ARID1A	CIB1	0.859	1
ARID1A	KRT3	0.859	1
ARID1A	NRAS	0.859	1
ARID1A	SRPX	0.859	1
ATRX	PDGFRA	0.859	1
ATRX	STK19	0.859	1
CIB1	Del_5q34	0.859	1
DLX6	Amp_4q12	0.859	1
DLX6	Del_5q34	0.859	1
ELF4	Amp_4q12	0.859	1
ELF4	Del_5q34	0.859	1
FAM47C	KRT3	0.859	1
FAM47C	NAP1L2	0.859	1
FAM47C	NRAS	0.859	1
FAM47C	SRPX	0.859	1
FAM47C	Del_19q13.42	0.859	1
KRT3	Amp_4q12	0.859	1
NAP1L2	Amp_4q12	0.859	1
NRAS	Amp_4q12	0.859	1
NRAS	Del_5q34	0.859	1
PIK3CA	PTEN	0.859	1
PIK3CA	Amp_12q14.1	0.859	1
R3HDM1	Amp_7q32.3	0.859	1
RBPJ	Amp_7q32.3	0.859	1
SMARCB1	Amp_4q12	0.859	1
SMARCB1	Del_5q34	0.859	1
SRPX	Amp_4q12	0.859	1
SRPX	Del_5q34	0.859	1
8q-Amp	Del_10q26.3	0.859	1
Del_3q13.31	Del_6q26	0.859	1
FAM47C	NIPBL	0.86	1
PLXNA3	Del_1p36.32	0.86	1
10p-Amp	Del_22q13.31	0.86	1
C14orf4	Amp_19p13.3	0.861	1
IRS4	Del_2q37.3	0.861	1
MED9	Amp_19p13.3	0.861	1
SMOC1	Amp_19p13.3	0.861	1
TMEM216	Amp_19p13.3	0.861	1
ZNF709	Amp_19p13.3	0.861	1
14q-Del	Amp_1q32.1	0.861	1
BRAF	TCF12	0.862	1
BRAF	15q-Del	0.862	1
BRAF	9q-Del	0.862	1
CREBZF	Del_6q26	0.862	1
EMG1	TCF12	0.862	1
EMG1	9q-Del	0.862	1
ENGASE	9q-Del	0.862	1
FAM47C	Del_1p36.32	0.862	1
FUBP1	Del_14q24.3	0.862	1
HTRA2	TCF12	0.862	1
HTRA2	15q-Del	0.862	1
PLXNA3	Amp_10p15.3	0.862	1
PLXNA3	Del_19q13.42	0.862	1
ROBO3	TCF12	0.862	1
ROBO3	15q-Del	0.862	1
ROBO3	9q-Del	0.862	1
SLC6A3	Amp_10p15.3	0.862	1
TCF12	ZNF512B	0.862	1
TCF12	Xq-Del	0.862	1
ZNF512B	15q-Del	0.862	1
ZNF512B	9q-Del	0.862	1
13q-Del	Del_14q24.3	0.862	1
15q-Del	Xq-Del	0.862	1
18q-Del	22q-Del	0.862	1
Amp_2p24.3	Del_6q26	0.862	1
PLXNA3	Del_1p32.3	0.863	1
SMARCA4	Amp_Xp11.22	0.863	1
SMARCA4	Del_Xq21.1	0.863	1
22q-Del	Amp_Xp11.22	0.863	1
22q-Del	Del_Xq21.1	0.863	1
C4BPA	10q-Del	0.864	1
G6PC	10q-Del	0.864	1
PIK3CA	7p-Amp	0.864	1
PTEN	18p-Del	0.864	1
ZBTB20	Del_8q24.3	0.864	1
8q-Amp	Amp_11q24.1	0.864	1
18p-Del	Amp_12q14.1	0.864	1
IDH2	Amp_7q31.2	0.865	1
PDGFRA	Del_13q14.2	0.865	1
PLXNA3	Del_14q24.3	0.865	1
PTEN	ZNF292	0.865	1
PTEN	Del_3q13.31	0.865	1
SETD2	Del_13q14.2	0.865	1
ZNF292	8q-Amp	0.865	1
19p-Amp	Amp_11q24.1	0.865	1
8q-Amp	12q-Del	0.865	1
8q-Amp	Del_3q13.31	0.865	1
12q-Del	Amp_12q14.1	0.865	1
C14orf4	PTEN	0.866	1
C14orf4	8q-Amp	0.866	1
C14orf4	Amp_12q14.1	0.866	1
C14orf4	Del_3p21.31	0.866	1
C14orf4	Del_5p15.33	0.866	1
CIB1	NIPBL	0.866	1
KRT3	NIPBL	0.866	1
MED9	PTEN	0.866	1
MED9	8q-Amp	0.866	1
MED9	Amp_12q14.1	0.866	1
MED9	Del_3p21.31	0.866	1
MED9	Del_5p15.33	0.866	1
NAP1L2	NIPBL	0.866	1
NIPBL	SRPX	0.866	1
PTEN	SMOC1	0.866	1
PTEN	TMEM216	0.866	1
PTEN	ZNF709	0.866	1
SMOC1	8q-Amp	0.866	1
SMOC1	Amp_12q14.1	0.866	1
SMOC1	Del_3p21.31	0.866	1
TMEM216	8q-Amp	0.866	1
TMEM216	Amp_12q14.1	0.866	1
TMEM216	Del_3p21.31	0.866	1
TMEM216	Del_5p15.33	0.866	1
ZNF709	8q-Amp	0.866	1
ZNF709	Amp_12q14.1	0.866	1
ZNF709	Del_3p21.31	0.866	1
ZNF709	Del_5p15.33	0.866	1
Del_3q13.31	Del_11p15.1	0.866	1
ARID1A	EGFR	0.867	1
C4BPA	19p-Amp	0.867	1
C4BPA	Amp_3q26.33	0.867	1
DLC1	Amp_3q26.33	0.867	1
EGFR	FAM47C	0.867	1
EGFR	Amp_4q12	0.867	1
EMG1	Del_13q14.2	0.867	1
G6PC	19p-Amp	0.867	1
G6PC	Amp_3q26.33	0.867	1
GAGE2A	PLXNA3	0.867	1
GAGE2A	SLC6A3	0.867	1
GAGE2A	ZMIZ1	0.867	1
MYT1	19p-Amp	0.867	1
MYT1	Amp_3q26.33	0.867	1
NEU2	19p-Amp	0.867	1
NEU2	Amp_3q26.33	0.867	1
PLCG1	19p-Amp	0.867	1
PLXNA3	Xp-Del	0.867	1
PPL	19p-Amp	0.867	1
PPL	Amp_3q26.33	0.867	1
RB1	19p-Amp	0.867	1
RB1	Amp_3q26.33	0.867	1
SLC6A3	Xp-Del	0.867	1
TRERF1	19p-Amp	0.867	1
TRERF1	Amp_3q26.33	0.867	1
Amp_2p24.3	Del_11p15.1	0.867	1
ARID2	7p-Amp	0.868	1
C4BPA	Amp_8q24.13	0.868	1
DLC1	Del_4q34.3	0.868	1
DNMT3A	7p-Amp	0.868	1
EGFR	KRAS	0.868	1
G6PC	Del_4q34.3	0.868	1
G6PC	Del_9p21.3	0.868	1
MYT1	Amp_8q24.13	0.868	1
MYT1	Del_4q34.3	0.868	1
NEU2	Del_9p21.3	0.868	1
PPL	Amp_8q24.13	0.868	1
RB1	Del_4q34.3	0.868	1
TCF12	4p-Del	0.868	1
TRERF1	Amp_8q24.13	0.868	1
11q-Amp	Del_11p15.5	0.868	1
7p-Amp	Del_7p22.3	0.868	1
4p-Del	9q-Del	0.868	1
ABCA7	NF1	0.869	1
ABCA7	6q-Del	0.869	1
C9orf79	NF1	0.869	1
CUL4B	6q-Del	0.869	1
NF1	PDGFRA	0.869	1
NF1	STK19	0.869	1
NF1	Amp_1q22	0.869	1
PDGFRA	Amp_12p13.32	0.869	1
PRX	6q-Del	0.869	1
PRX	Amp_12p13.32	0.869	1
SETD2	Amp_12p13.32	0.869	1
TNRC18	Amp_12p13.32	0.869	1
6q-Del	Amp_1q22	0.869	1
6q-Del	Amp_17q25.1	0.869	1
6q-Del	Del_3q29	0.869	1
Amp_12p13.32	Amp_17q25.1	0.869	1
BRAF	12q-Del	0.87	1
C14orf4	Del_9p21.3	0.87	1
EMG1	ZNF292	0.87	1
EMG1	12q-Del	0.87	1
EMG1	Del_3q13.31	0.87	1
ENGASE	12q-Del	0.87	1
ENGASE	Del_3q13.31	0.87	1
HTRA2	ZNF292	0.87	1
HTRA2	12q-Del	0.87	1
ROBO3	ZNF292	0.87	1
ROBO3	12q-Del	0.87	1
ROBO3	Del_3q13.31	0.87	1
SLC12A7	Del_19q13.42	0.87	1
SMOC1	Del_9p21.3	0.87	1
TMEM216	Del_9p21.3	0.87	1
ZNF292	Xq-Del	0.87	1
ZNF512B	12q-Del	0.87	1
ZNF512B	Del_3q13.31	0.87	1
ZNF709	Del_9p21.3	0.87	1
12q-Del	Xq-Del	0.87	1
ABCA7	ANKRD36	0.871	1
ABCA7	CREBZF	0.871	1
ABCA7	RBPJ	0.871	1
ABCA7	Amp_2p24.3	0.871	1
ANKRD36	C9orf79	0.871	1
ANKRD36	CUL4B	0.871	1
ANKRD36	PDGFRA	0.871	1
ANKRD36	PRX	0.871	1
ANKRD36	SETD2	0.871	1
ANKRD36	STK19	0.871	1
ANKRD36	TNRC18	0.871	1
C9orf79	CREBZF	0.871	1
C9orf79	PTPN11	0.871	1
C9orf79	RBPJ	0.871	1
C9orf79	Amp_2p24.3	0.871	1
CREBZF	CUL4B	0.871	1
CREBZF	PDGFRA	0.871	1
CREBZF	SETD2	0.871	1
CREBZF	STK19	0.871	1
CREBZF	TNRC18	0.871	1
CREBZF	Amp_1q22	0.871	1
CUL4B	PTPN11	0.871	1
CUL4B	RBPJ	0.871	1
PDGFRA	PTPN11	0.871	1
PDGFRA	Amp_2p24.3	0.871	1
PIK3CA	15q-Del	0.871	1
PRX	PTPN11	0.871	1
PRX	RBPJ	0.871	1
PRX	Amp_2p24.3	0.871	1
PTPN11	SETD2	0.871	1
PTPN11	STK19	0.871	1
PTPN11	TNRC18	0.871	1
PTPN11	Amp_1q22	0.871	1
R3HDM1	Amp_1q22	0.871	1
RBPJ	SETD2	0.871	1
RBPJ	STK19	0.871	1
RBPJ	TNRC18	0.871	1
RBPJ	Amp_1q22	0.871	1
SETD2	Amp_2p24.3	0.871	1
SLC12A7	Amp_1q22	0.871	1
SMOC1	Del_6p25.3	0.871	1
TCF12	TP53	0.871	1
TMEM216	Del_6p25.3	0.871	1
TNRC18	Amp_2p24.3	0.871	1
ZNF709	Del_6p25.3	0.871	1
14q-Del	Del_1p36.32	0.871	1
ANKRD36	13q-Del	0.872	1
CREBZF	Del_6q22.31	0.872	1
FUBP1	R3HDM1	0.872	1
FUBP1	RBPJ	0.872	1
FUBP1	ZNF292	0.872	1
GAGE2A	Del_9p23	0.872	1
IRS4	Del_9p23	0.872	1
PLXNA3	19q-Del	0.872	1
PTEN	Del_14q24.3	0.872	1
PTPN11	13q-Del	0.872	1
R3HDM1	13q-Del	0.872	1
RBPJ	13q-Del	0.872	1
RBPJ	Del_6q22.31	0.872	1
RET	13q-Del	0.872	1
12q-Del	Del_6q22.31	0.872	1
13q-Del	Amp_2p24.3	0.872	1
13q-Del	Del_3q13.31	0.872	1
Amp_2p24.3	Del_6q22.31	0.872	1
Amp_12q14.1	Del_14q24.3	0.872	1
Amp_19p13.3	Del_Xq21.1	0.872	1
Del_3q13.31	Del_6q22.31	0.872	1
FAM47C	Amp_1q32.1	0.873	1
KRT3	Del_9p23	0.873	1
NAP1L2	Del_9p23	0.873	1
NRAS	Del_9p23	0.873	1
SMARCB1	Del_9p23	0.873	1
SRPX	Del_9p23	0.873	1
Amp_1q32.1	Del_5q34	0.873	1
CIB1	Amp_1q32.1	0.874	1
DLX6	Amp_1q32.1	0.874	1
ELF4	Amp_1q32.1	0.874	1
KRT3	Amp_1q32.1	0.874	1
NAP1L2	Amp_1q32.1	0.874	1
NRAS	Amp_1q32.1	0.874	1
SMARCA4	Amp_19p13.3	0.874	1
SMARCA4	Del_18q23	0.874	1
SMARCB1	Amp_1q32.1	0.874	1
10p-Amp	8q-Amp	0.874	1
22q-Del	Amp_19p13.3	0.874	1
KRAS	NF1	0.875	1
KRAS	6q-Del	0.875	1
KRAS	Amp_12p13.32	0.875	1
RET	Del_10q26.3	0.875	1
SLC12A7	Del_10q26.3	0.875	1
Amp_2p24.3	Del_10q26.3	0.875	1
ARID2	4q-Del	0.876	1
C4BPA	10p-Del	0.876	1
G6PC	10p-Del	0.876	1
MYST4	4q-Del	0.876	1
NUDT11	4q-Del	0.876	1
7q-Amp	Amp_Xp11.22	0.876	1
15q-Del	Del_13q14.2	0.876	1
4q-Del	Del_7p22.3	0.876	1
Amp_7q31.2	Del_3p21.31	0.876	1
BRAF	9p-Del	0.877	1
C14orf4	PIK3R1	0.877	1
C14orf4	4p-Del	0.877	1
C4BPA	Amp_13q34	0.877	1
C4BPA	Del_7p22.3	0.877	1
DLC1	Amp_13q34	0.877	1
DLC1	Del_7p22.3	0.877	1
DNMT3A	PLCG1	0.877	1
EMG1	9p-Del	0.877	1
G6PC	Amp_13q34	0.877	1
G6PC	Del_7p22.3	0.877	1
HTRA2	Del_11p15.5	0.877	1
IRS4	14q-Del	0.877	1
MED9	PIK3R1	0.877	1
MED9	4p-Del	0.877	1
MYST4	PLCG1	0.877	1
MYT1	Amp_13q34	0.877	1
NEU2	Amp_13q34	0.877	1
NUDT11	PLCG1	0.877	1
PIK3R1	TMEM216	0.877	1
PIK3R1	ZNF709	0.877	1
PLCG1	Amp_13q34	0.877	1
PLCG1	Del_7p22.3	0.877	1
PPL	Amp_13q34	0.877	1
PPL	Del_7p22.3	0.877	1
RB1	Amp_13q34	0.877	1
RB1	Del_7p22.3	0.877	1
ROBO3	9p-Del	0.877	1
TP53	Del_4q34.3	0.877	1
TRERF1	Amp_13q34	0.877	1
TRERF1	Del_7p22.3	0.877	1
ZNF709	4p-Del	0.877	1
9q-Del	Del_2q37.3	0.877	1
Xq-Del	Del_11p15.5	0.877	1
NF1	NOTCH1	0.878	1
ZBTB20	15q-Del	0.878	1
ABCA7	Del_11p15.5	0.879	1
BRAF	Amp_Xp11.22	0.879	1
BRAF	Del_Xq21.1	0.879	1
CUL4B	Del_11p15.5	0.879	1
EMG1	Amp_Xp11.22	0.879	1
EMG1	Del_Xq21.1	0.879	1
ENGASE	Del_Xq21.1	0.879	1
FAM47C	19q-Del	0.879	1
HTRA2	Amp_Xp11.22	0.879	1
PDGFRA	9p-Del	0.879	1
PDGFRA	Del_11p15.5	0.879	1
PRX	9p-Del	0.879	1
PRX	Del_11p15.5	0.879	1
ROBO3	Amp_Xp11.22	0.879	1
ROBO3	Del_Xq21.1	0.879	1
STK19	9p-Del	0.879	1
ZNF512B	Amp_Xp11.22	0.879	1
ZNF512B	Del_Xq21.1	0.879	1
4q-Del	Del_14q24.3	0.879	1
Xq-Del	Amp_Xp11.22	0.879	1
Amp_7q32.3	Del_18q23	0.879	1
DNMT3A	Amp_7q31.2	0.88	1
EGFR	SLC6A3	0.88	1
EGFR	ZMIZ1	0.88	1
4p-Del	Amp_7q32.3	0.88	1
Amp_7q31.2	Del_7p22.3	0.88	1
CIB1	11q-Amp	0.881	1
CIB1	Del_8q24.3	0.881	1
DLX6	11q-Amp	0.881	1
DLX6	Del_8q24.3	0.881	1
ELF4	11q-Amp	0.881	1
ELF4	Del_8q24.3	0.881	1
GAGE2A	IRS4	0.881	1
GAGE2A	Xp-Del	0.881	1
KRT3	11q-Amp	0.881	1
KRT3	Del_8q24.3	0.881	1
NAP1L2	11q-Amp	0.881	1
NAP1L2	Del_8q24.3	0.881	1
NRAS	11q-Amp	0.881	1
NRAS	Del_8q24.3	0.881	1
SMARCA4	19p-Amp	0.881	1
SMARCB1	11q-Amp	0.881	1
SMARCB1	Del_8q24.3	0.881	1
SRPX	11q-Amp	0.881	1
SRPX	Del_8q24.3	0.881	1
8q-Amp	Del_Xq21.1	0.881	1
22q-Del	Amp_3q26.33	0.881	1
Del_5p15.33	Del_Xq21.1	0.881	1
GAGE2A	Del_22q13.31	0.882	1
IDH1	ZBTB20	0.882	1
IDH1	15q-Del	0.882	1
IRS4	Del_18q23	0.882	1
IRS4	Del_22q13.31	0.882	1
MED9	ZBTB20	0.882	1
SMOC1	ZBTB20	0.882	1
TMEM216	ZBTB20	0.882	1
Amp_8q24.13	Del_22q13.31	0.882	1
Amp_Xp11.22	Del_6q26	0.882	1
ANKRD36	PLXNA3	0.883	1
ANKRD36	SLC6A3	0.883	1
ANKRD36	ZMIZ1	0.883	1
CREBZF	PLXNA3	0.883	1
CREBZF	SLC6A3	0.883	1
CREBZF	ZMIZ1	0.883	1
EGFR	NIPBL	0.883	1
NUDT11	Del_1p36.32	0.883	1
PIK3R1	12q-Del	0.883	1
PLXNA3	PTPN11	0.883	1
PLXNA3	RBPJ	0.883	1
PLXNA3	Amp_2p24.3	0.883	1
PTPN11	SLC6A3	0.883	1
PTPN11	ZMIZ1	0.883	1
RBPJ	SLC6A3	0.883	1
RBPJ	ZMIZ1	0.883	1
SLC6A3	Amp_2p24.3	0.883	1
ZMIZ1	Amp_2p24.3	0.883	1
ZNF292	4p-Del	0.883	1
12q-Del	4p-Del	0.883	1
18q-Del	Amp_7q32.3	0.883	1
ARID1A	NF1	0.884	1
ARID2	Amp_11q24.1	0.884	1
C14orf4	TP53	0.884	1
DNMT3A	18p-Del	0.884	1
FAM47C	NF1	0.884	1
MYST4	18p-Del	0.884	1
MYST4	Amp_11q24.1	0.884	1
NIPBL	Amp_1q32.1	0.884	1
NOTCH1	15q-Del	0.884	1
NOTCH1	Amp_7q31.2	0.884	1
RBPJ	Amp_7q31.2	0.884	1
SMOC1	TP53	0.884	1
TMEM216	TP53	0.884	1
18p-Del	Amp_13q34	0.884	1
Amp_11q24.1	Del_7p22.3	0.884	1
FUBP1	4q-Del	0.885	1
PIK3CA	PTPN11	0.885	1
PIK3CA	R3HDM1	0.885	1
PIK3CA	RET	0.885	1
PIK3CA	SLC12A7	0.885	1
PTEN	SMARCA4	0.885	1
PTEN	18q-Del	0.885	1
SMARCA4	8q-Amp	0.885	1
SMARCA4	Del_3p21.31	0.885	1
8q-Amp	22q-Del	0.885	1
18q-Del	Del_3p21.31	0.885	1
22q-Del	Amp_12q14.1	0.885	1
ARID1A	Del_8q24.3	0.886	1
ATRX	Del_8q24.3	0.886	1
CIB1	7q-Amp	0.886	1
CIC	MED9	0.886	1
CIC	TMEM216	0.886	1
CIC	ZNF709	0.886	1
DLX6	7q-Amp	0.886	1
ELF4	7q-Amp	0.886	1
EMG1	Del_19q13.42	0.886	1
ROBO3	Del_19q13.42	0.886	1
SMARCB1	7q-Amp	0.886	1
SRPX	7q-Amp	0.886	1
10p-Amp	Del_6p25.3	0.886	1
11q-Amp	Del_5q34	0.886	1
Xq-Del	Del_19q13.42	0.886	1
Del_6p25.3	Del_12q12	0.886	1
Del_8q24.3	Del_18q23	0.886	1
C14orf4	IDH2	0.887	1
C14orf4	Amp_17q25.1	0.887	1
C14orf4	Del_3q29	0.887	1
CUL4B	Amp_7q32.3	0.887	1
GAGE2A	Amp_10p15.3	0.887	1
IDH2	MED9	0.887	1
IDH2	SMOC1	0.887	1
IDH2	ZNF709	0.887	1
IRS4	11p-Del	0.887	1
IRS4	Amp_10p15.3	0.887	1
MED9	Amp_17q25.1	0.887	1
MED9	Del_3q29	0.887	1
PRX	Amp_7q32.3	0.887	1
SMOC1	Amp_17q25.1	0.887	1
SMOC1	Del_3q29	0.887	1
TMEM216	Del_3q29	0.887	1
ZNF709	Amp_17q25.1	0.887	1
ZNF709	Del_3q29	0.887	1
10q-Del	Amp_13q34	0.887	1
Amp_19p13.3	Del_22q13.31	0.887	1
ABCA7	PLCG1	0.888	1
BRAF	19p-Amp	0.888	1
BRAF	Amp_3q26.33	0.888	1
C9orf79	PLCG1	0.888	1
CIB1	TCF12	0.888	1
CIB1	9q-Del	0.888	1
CUL4B	PLCG1	0.888	1
DLC1	Amp_1q22	0.888	1
DLX6	TCF12	0.888	1
DLX6	15q-Del	0.888	1
DLX6	9q-Del	0.888	1
ELF4	TCF12	0.888	1
ELF4	15q-Del	0.888	1
ELF4	9q-Del	0.888	1
EMG1	19p-Amp	0.888	1
EMG1	Amp_3q26.33	0.888	1
ENGASE	19p-Amp	0.888	1
ENGASE	Amp_3q26.33	0.888	1
G6PC	Amp_1q22	0.888	1
HTRA2	19p-Amp	0.888	1
HTRA2	Amp_3q26.33	0.888	1
KRT3	TCF12	0.888	1
KRT3	15q-Del	0.888	1
KRT3	9q-Del	0.888	1
MYT1	Amp_1q22	0.888	1
NAP1L2	TCF12	0.888	1
NAP1L2	9q-Del	0.888	1
NEU2	Amp_1q22	0.888	1
NRAS	TCF12	0.888	1
NRAS	15q-Del	0.888	1
NRAS	9q-Del	0.888	1
PIK3R1	18p-Del	0.888	1
PLCG1	PRX	0.888	1
PLCG1	SETD2	0.888	1
PLCG1	STK19	0.888	1
PLCG1	TNRC18	0.888	1
PLCG1	Amp_1q22	0.888	1
PPL	Amp_1q22	0.888	1
RB1	Amp_1q22	0.888	1
ROBO3	19p-Amp	0.888	1
SMARCB1	15q-Del	0.888	1
SMARCB1	9q-Del	0.888	1
SRPX	TCF12	0.888	1
SRPX	15q-Del	0.888	1
SRPX	9q-Del	0.888	1
TRERF1	Amp_1q22	0.888	1
ZNF512B	19p-Amp	0.888	1
ZNF512B	Amp_3q26.33	0.888	1
19p-Amp	Xq-Del	0.888	1
9p-Del	Del_12q12	0.888	1
9q-Del	Amp_17q25.1	0.888	1
Xq-Del	Amp_3q26.33	0.888	1
Del_1p32.3	Del_4q34.3	0.888	1
C4BPA	CIC	0.889	1
CIB1	Amp_7p11.2	0.889	1
CIC	DLC1	0.889	1
CIC	PPL	0.889	1
DLX6	Amp_7p11.2	0.889	1
ELF4	Amp_7p11.2	0.889	1
KRT3	Amp_7p11.2	0.889	1
SMARCB1	Amp_7p11.2	0.889	1
Del_10q26.3	Del_12q12	0.889	1
BRAF	7p-Amp	0.89	1
EMG1	7p-Amp	0.89	1
ENGASE	7p-Amp	0.89	1
FAM47C	Amp_7q31.2	0.89	1
HTRA2	7p-Amp	0.89	1
IRS4	7q-Amp	0.89	1
KRAS	4q-Del	0.89	1
PIK3CA	PIK3R1	0.89	1
PIK3CA	12q-Del	0.89	1
R3HDM1	Del_2q37.3	0.89	1
ZNF512B	7p-Amp	0.89	1
ARID2	10p-Amp	0.891	1
DNMT3A	10p-Amp	0.891	1
ELF4	Del_1p36.32	0.891	1
KRAS	Del_1p36.32	0.891	1
NAP1L2	Del_1p36.32	0.891	1
NF1	SLC6A3	0.891	1
NF1	9p-Del	0.891	1
NUDT11	10p-Amp	0.891	1
NUDT11	Del_12q12	0.891	1
PLXNA3	6q-Del	0.891	1
PLXNA3	Amp_12p13.32	0.891	1
SRPX	Del_1p36.32	0.891	1
ZBTB20	4q-Del	0.891	1
ZMIZ1	6q-Del	0.891	1
15q-Del	9p-Del	0.891	1
Del_4q34.3	Del_5p15.33	0.891	1
DNMT3A	Amp_8q24.13	0.892	1
KRAS	Del_1p32.3	0.892	1
MYST4	Amp_8q24.13	0.892	1
NUDT11	Amp_8q24.13	0.892	1
NUDT11	Del_4q34.3	0.892	1
ARID1A	C14orf4	0.893	1
ARID1A	MED9	0.893	1
ARID1A	SMOC1	0.893	1
ARID1A	TMEM216	0.893	1
ARID1A	ZNF709	0.893	1
ATRX	Del_9p23	0.893	1
C14orf4	FAM47C	0.893	1
C14orf4	Amp_4q12	0.893	1
C14orf4	Del_5q34	0.893	1
CIB1	Del_1p32.3	0.893	1
ELF4	Del_1p32.3	0.893	1
FAM47C	MED9	0.893	1
FAM47C	SMOC1	0.893	1
FAM47C	TMEM216	0.893	1
MED9	Amp_4q12	0.893	1
MED9	Del_5q34	0.893	1
NAP1L2	Del_1p32.3	0.893	1
PLXNA3	1p-Del	0.893	1
SMOC1	Amp_4q12	0.893	1
SMOC1	Del_5q34	0.893	1
SRPX	Del_1p32.3	0.893	1
TMEM216	Amp_4q12	0.893	1
TMEM216	Del_5q34	0.893	1
ZNF709	Amp_4q12	0.893	1
ZNF709	Del_5q34	0.893	1
13q-Del	Del_Xq21.1	0.893	1
Amp_Xp11.22	Del_6q22.31	0.893	1
ELF4	Del_14q24.3	0.894	1
NOTCH1	R3HDM1	0.894	1
NOTCH1	RET	0.894	1
NOTCH1	Amp_2p24.3	0.894	1
NRAS	Del_14q24.3	0.894	1
SMARCB1	Del_14q24.3	0.894	1
7q-Amp	4p-Del	0.894	1
19q-Del	Del_7p22.3	0.894	1
ABCA7	4q-Del	0.895	1
ANKRD36	GAGE2A	0.895	1
ANKRD36	Xp-Del	0.895	1
CIB1	ZNF292	0.895	1
CIB1	12q-Del	0.895	1
CIB1	Del_3q13.31	0.895	1
CREBZF	GAGE2A	0.895	1
CREBZF	IRS4	0.895	1
CREBZF	Xp-Del	0.895	1
DLX6	12q-Del	0.895	1
DLX6	Del_3q13.31	0.895	1
ELF4	12q-Del	0.895	1
ELF4	Del_3q13.31	0.895	1
GAGE2A	PTPN11	0.895	1
GAGE2A	R3HDM1	0.895	1
GAGE2A	RBPJ	0.895	1
GAGE2A	RET	0.895	1
GAGE2A	SLC12A7	0.895	1
GAGE2A	Amp_2p24.3	0.895	1
IRS4	PTPN11	0.895	1
IRS4	RBPJ	0.895	1
IRS4	Amp_2p24.3	0.895	1
KRT3	ZNF292	0.895	1
KRT3	12q-Del	0.895	1
KRT3	Del_3q13.31	0.895	1
NAP1L2	ZNF292	0.895	1
NAP1L2	12q-Del	0.895	1
NAP1L2	Del_3q13.31	0.895	1
NEU2	Del_6q26	0.895	1
NRAS	ZNF292	0.895	1
NRAS	12q-Del	0.895	1
NRAS	Del_3q13.31	0.895	1
PRX	4q-Del	0.895	1
PTPN11	Xp-Del	0.895	1
RB1	Del_6q26	0.895	1
RBPJ	Xp-Del	0.895	1
RET	Xp-Del	0.895	1
SLC12A7	Xp-Del	0.895	1
SMARCB1	12q-Del	0.895	1
SMARCB1	Del_3q13.31	0.895	1
SRPX	ZNF292	0.895	1
SRPX	12q-Del	0.895	1
SRPX	Del_3q13.31	0.895	1
TNRC18	4q-Del	0.895	1
4q-Del	Amp_1q22	0.895	1
Xp-Del	Amp_2p24.3	0.895	1
Amp_19p13.3	Del_5p15.33	0.895	1
C9orf79	7p-Amp	0.896	1
KRAS	19q-Del	0.896	1
PRX	7p-Amp	0.896	1
SETD2	7p-Amp	0.896	1
SLC6A3	Del_13q14.2	0.896	1
STK19	7p-Amp	0.896	1
TNRC18	7p-Amp	0.896	1
ZMIZ1	Del_13q14.2	0.896	1
19p-Amp	Del_5p15.33	0.896	1
8q-Amp	Amp_3q26.33	0.896	1
12q-Del	Del_2q37.3	0.896	1
Amp_3q26.33	Del_5p15.33	0.896	1
ARID2	EMG1	0.897	1
ARID2	HTRA2	0.897	1
ARID2	ROBO3	0.897	1
ARID2	SMARCA4	0.897	1
ARID2	22q-Del	0.897	1
ARID2	Xq-Del	0.897	1
BRAF	Amp_13q34	0.897	1
BRAF	Del_7p22.3	0.897	1
DNMT3A	EMG1	0.897	1
DNMT3A	HTRA2	0.897	1
DNMT3A	ROBO3	0.897	1
DNMT3A	SMARCA4	0.897	1
DNMT3A	18q-Del	0.897	1
EMG1	NUDT11	0.897	1
EMG1	Amp_13q34	0.897	1
EMG1	Del_7p22.3	0.897	1
ENGASE	Amp_13q34	0.897	1
ENGASE	Del_7p22.3	0.897	1
HTRA2	MYST4	0.897	1
HTRA2	NUDT11	0.897	1
HTRA2	Amp_13q34	0.897	1
KRAS	10p-Amp	0.897	1
KRAS	Del_12q12	0.897	1
MYST4	ROBO3	0.897	1
MYST4	SMARCA4	0.897	1
MYST4	18q-Del	0.897	1
MYST4	Xq-Del	0.897	1
NUDT11	ROBO3	0.897	1
NUDT11	Xq-Del	0.897	1
ROBO3	Amp_13q34	0.897	1
ZNF512B	Amp_13q34	0.897	1
ZNF512B	Del_7p22.3	0.897	1
18q-Del	Amp_13q34	0.897	1
22q-Del	Del_7p22.3	0.897	1
4p-Del	Amp_Xp11.22	0.897	1
4p-Del	Del_Xq21.1	0.897	1
Xq-Del	Amp_13q34	0.897	1
Amp_8q24.13	Del_13q14.2	0.897	1
ARID1A	TCF12	0.898	1
C14orf4	NIPBL	0.898	1
CIB1	19q-Del	0.898	1
ELF4	19q-Del	0.898	1
MED9	NIPBL	0.898	1
NAP1L2	19q-Del	0.898	1
NF1	NIPBL	0.898	1
NIPBL	SMOC1	0.898	1
NIPBL	TMEM216	0.898	1
NIPBL	ZNF709	0.898	1
NRAS	19q-Del	0.898	1
SRPX	19q-Del	0.898	1
TCF12	Amp_4q12	0.898	1
15q-Del	Del_5q34	0.898	1
G6PC	Del_11p15.1	0.899	1
IRS4	Del_14q24.3	0.899	1
MYT1	Del_11p15.1	0.899	1
PLCG1	SLC6A3	0.899	1
7p-Amp	Amp_11q24.1	0.899	1
Del_3q13.31	Del_13q14.2	0.899	1
C14orf4	Amp_7q32.3	0.9	1
SMOC1	Amp_7q32.3	0.9	1
TMEM216	Amp_7q32.3	0.9	1
13q-Del	Amp_17q25.1	0.9	1
Amp_12q14.1	Del_22q13.31	0.9	1
ABCA7	18p-Del	0.901	1
ABCA7	Amp_11q24.1	0.901	1
C9orf79	Amp_11q24.1	0.901	1
CUL4B	18p-Del	0.901	1
IDH1	4p-Del	0.901	1
KRAS	SMARCA4	0.901	1
KRAS	22q-Del	0.901	1
STK19	18p-Del	0.901	1
TNRC18	Amp_11q24.1	0.901	1
ZNF292	Del_3q29	0.901	1
10p-Del	Amp_13q34	0.901	1
12q-Del	Del_3q29	0.901	1
Amp_1q22	Amp_11q24.1	0.901	1
ATRX	Del_3q29	0.902	1
CIB1	Del_Xq21.1	0.902	1
CIC	ZMIZ1	0.902	1
DLX6	Amp_Xp11.22	0.902	1
DLX6	Del_Xq21.1	0.902	1
EGFR	IRS4	0.902	1
EGFR	Xp-Del	0.902	1
ELF4	Amp_Xp11.22	0.902	1
ELF4	Del_Xq21.1	0.902	1
KRT3	Amp_Xp11.22	0.902	1
KRT3	Del_Xq21.1	0.902	1
NAP1L2	Amp_Xp11.22	0.902	1
NAP1L2	Del_Xq21.1	0.902	1
NEU2	TP53	0.902	1
NRAS	Amp_Xp11.22	0.902	1
NRAS	Del_Xq21.1	0.902	1
PPL	TP53	0.902	1
SMARCB1	Amp_Xp11.22	0.902	1
SMARCB1	Del_Xq21.1	0.902	1
SRPX	Amp_Xp11.22	0.902	1
SRPX	Del_Xq21.1	0.902	1
TP53	Del_7p22.3	0.902	1
9q-Del	Del_22q13.31	0.902	1
Del_2q37.3	Del_13q14.2	0.902	1
ABCA7	Del_10q26.3	0.903	1
ANKRD36	14q-Del	0.903	1
BRAF	10q-Del	0.903	1
C4BPA	FUBP1	0.903	1
CIC	11q-Amp	0.903	1
CUL4B	Del_10q26.3	0.903	1
DLC1	FUBP1	0.903	1
FUBP1	MYT1	0.903	1
FUBP1	NEU2	0.903	1
FUBP1	RB1	0.903	1
FUBP1	TRERF1	0.903	1
IDH2	4q-Del	0.903	1
MYT1	13q-Del	0.903	1
NEU2	Del_6q22.31	0.903	1
NF1	18p-Del	0.903	1
PRX	Del_10q26.3	0.903	1
R3HDM1	14q-Del	0.903	1
RB1	Del_6q22.31	0.903	1
SMARCA4	9p-Del	0.903	1
10q-Del	Xq-Del	0.903	1
Amp_1q22	Del_10q26.3	0.903	1
Amp_3q26.33	Del_6q26	0.903	1
DNMT3A	Amp_19p13.3	0.904	1
IDH1	11q-Amp	0.904	1
IDH1	Amp_11q24.1	0.904	1
MED9	Amp_1q32.1	0.904	1
NUDT11	Amp_19p13.3	0.904	1
SMOC1	Amp_1q32.1	0.904	1
TMEM216	Amp_1q32.1	0.904	1
ZNF709	Amp_1q32.1	0.904	1
Del_2q37.3	Del_22q13.31	0.904	1
KRAS	Amp_19p13.3	0.905	1
ZBTB20	Del_Xq21.1	0.905	1
8q-Amp	Del_3p21.31	0.905	1
8q-Amp	Del_5p15.33	0.905	1
9p-Del	Amp_17q25.1	0.905	1
Amp_12q14.1	Del_5p15.33	0.905	1
Del_3p21.31	Del_5p15.33	0.905	1
ABCA7	EMG1	0.906	1
ABCA7	HTRA2	0.906	1
ABCA7	ROBO3	0.906	1
ABCA7	Xq-Del	0.906	1
BRAF	Amp_1q22	0.906	1
C9orf79	EMG1	0.906	1
C9orf79	HTRA2	0.906	1
C9orf79	ROBO3	0.906	1
C9orf79	Xq-Del	0.906	1
CUL4B	EMG1	0.906	1
CUL4B	HTRA2	0.906	1
CUL4B	ROBO3	0.906	1
CUL4B	Xq-Del	0.906	1
EMG1	PDGFRA	0.906	1
EMG1	PRX	0.906	1
EMG1	SETD2	0.906	1
EMG1	STK19	0.906	1
EMG1	TNRC18	0.906	1
EMG1	Amp_1q22	0.906	1
ENGASE	Amp_1q22	0.906	1
G6PC	Amp_7q32.3	0.906	1
HTRA2	PDGFRA	0.906	1
HTRA2	PRX	0.906	1
HTRA2	SETD2	0.906	1
HTRA2	TNRC18	0.906	1
HTRA2	Amp_1q22	0.906	1
HTRA2	Amp_8q24.13	0.906	1
HTRA2	Del_4q34.3	0.906	1
KRAS	1p-Del	0.906	1
MYT1	Amp_7q32.3	0.906	1
PDGFRA	ROBO3	0.906	1
PDGFRA	Xq-Del	0.906	1
PLCG1	Amp_7q32.3	0.906	1
PRX	ROBO3	0.906	1
PRX	Xq-Del	0.906	1
RB1	Amp_7q32.3	0.906	1
ROBO3	SETD2	0.906	1
ROBO3	TNRC18	0.906	1
ROBO3	Amp_1q22	0.906	1
SETD2	Xq-Del	0.906	1
STK19	Xq-Del	0.906	1
TNRC18	Xq-Del	0.906	1
ZNF512B	Amp_1q22	0.906	1
ZNF512B	Del_4q34.3	0.906	1
11q-Amp	Del_19q13.42	0.906	1
19q-Del	Del_4q34.3	0.906	1
Xq-Del	Amp_1q22	0.906	1
Xq-Del	Del_4q34.3	0.906	1
ANKRD36	Del_18q23	0.907	1
ANKRD36	Del_22q13.31	0.907	1
CREBZF	Del_18q23	0.907	1
NIPBL	9q-Del	0.907	1
PTPN11	Del_22q13.31	0.907	1
R3HDM1	Del_18q23	0.907	1
RBPJ	Del_18q23	0.907	1
RET	Del_18q23	0.907	1
SLC12A7	Del_22q13.31	0.907	1
Amp_2p24.3	Del_18q23	0.907	1
Amp_3q26.33	Del_11p15.1	0.907	1
ANKRD36	CREBZF	0.908	1
ANKRD36	PTPN11	0.908	1
ANKRD36	R3HDM1	0.908	1
ANKRD36	RBPJ	0.908	1
ANKRD36	RET	0.908	1
ANKRD36	SLC12A7	0.908	1
ANKRD36	Amp_2p24.3	0.908	1
CREBZF	PTPN11	0.908	1
CREBZF	R3HDM1	0.908	1
CREBZF	RBPJ	0.908	1
CREBZF	RET	0.908	1
CREBZF	SLC12A7	0.908	1
CREBZF	Amp_2p24.3	0.908	1
CUL4B	10p-Amp	0.908	1
CUL4B	Del_12q12	0.908	1
FAM47C	Del_11p15.1	0.908	1
PDGFRA	10p-Amp	0.908	1
PRX	10p-Amp	0.908	1
PTPN11	R3HDM1	0.908	1
PTPN11	RBPJ	0.908	1
PTPN11	RET	0.908	1
PTPN11	SLC12A7	0.908	1
PTPN11	Amp_2p24.3	0.908	1
R3HDM1	RBPJ	0.908	1
R3HDM1	Amp_2p24.3	0.908	1
RBPJ	SLC12A7	0.908	1
RBPJ	Amp_2p24.3	0.908	1
RET	Amp_2p24.3	0.908	1
SETD2	Del_12q12	0.908	1
SLC12A7	Amp_2p24.3	0.908	1
TNRC18	10p-Amp	0.908	1
9p-Del	Amp_10p15.3	0.908	1
ARID1A	ZNF292	0.909	1
C14orf4	11q-Amp	0.909	1
CIB1	19p-Amp	0.909	1
CIB1	Amp_3q26.33	0.909	1
DLX6	19p-Amp	0.909	1
DLX6	Amp_3q26.33	0.909	1
ELF4	19p-Amp	0.909	1
ELF4	Amp_3q26.33	0.909	1
KRAS	PTEN	0.909	1
KRAS	8q-Amp	0.909	1
KRAS	Amp_12q14.1	0.909	1
KRAS	Del_3p21.31	0.909	1
KRAS	Del_5p15.33	0.909	1
KRT3	19p-Amp	0.909	1
KRT3	Amp_3q26.33	0.909	1
MED9	11q-Amp	0.909	1
MED9	Del_8q24.3	0.909	1
MED9	Del_10q26.3	0.909	1
NAP1L2	19p-Amp	0.909	1
NAP1L2	Amp_3q26.33	0.909	1
NRAS	19p-Amp	0.909	1
NRAS	Amp_3q26.33	0.909	1
SMARCB1	19p-Amp	0.909	1
SMARCB1	Amp_3q26.33	0.909	1
SMOC1	11q-Amp	0.909	1
SMOC1	Del_8q24.3	0.909	1
SRPX	19p-Amp	0.909	1
SRPX	Amp_3q26.33	0.909	1
TMEM216	11q-Amp	0.909	1
TMEM216	Del_8q24.3	0.909	1
ZNF292	Amp_4q12	0.909	1
ZNF292	Del_5q34	0.909	1
ZNF709	11q-Amp	0.909	1
ZNF709	Del_8q24.3	0.909	1
Amp_4q12	Del_3q13.31	0.909	1
C4BPA	GAGE2A	0.91	1
C4BPA	Xp-Del	0.91	1
CREBZF	Del_9p23	0.91	1
DLC1	GAGE2A	0.91	1
DLC1	Xp-Del	0.91	1
G6PC	GAGE2A	0.91	1
G6PC	Xp-Del	0.91	1
GAGE2A	MYT1	0.91	1
GAGE2A	NEU2	0.91	1
GAGE2A	PLCG1	0.91	1
GAGE2A	PPL	0.91	1
GAGE2A	RB1	0.91	1
GAGE2A	TRERF1	0.91	1
IRS4	PLCG1	0.91	1
MYT1	Xp-Del	0.91	1
NEU2	Xp-Del	0.91	1
PLCG1	Xp-Del	0.91	1
PPL	19q-Del	0.91	1
PPL	Xp-Del	0.91	1
RB1	Xp-Del	0.91	1
SLC12A7	Del_9p23	0.91	1
7p-Amp	9q-Del	0.91	1
10q-Del	Del_8q24.3	0.91	1
13q-Del	Del_12q12	0.91	1
Amp_2p24.3	Del_9p23	0.91	1
ARID2	PTEN	0.911	1
ARID2	Amp_12q14.1	0.911	1
C9orf79	10q-Del	0.911	1
CIB1	1p-Del	0.911	1
CUL4B	10q-Del	0.911	1
DNMT3A	PTEN	0.911	1
EGFR	13q-Del	0.911	1
ELF4	1p-Del	0.911	1
IDH2	18p-Del	0.911	1
IDH2	Amp_11q24.1	0.911	1
MYST4	Del_5p15.33	0.911	1
NAP1L2	1p-Del	0.911	1
NUDT11	PTEN	0.911	1
NUDT11	8q-Amp	0.911	1
NUDT11	Del_3p21.31	0.911	1
PRX	10q-Del	0.911	1
RBPJ	Amp_10p15.3	0.911	1
SRPX	1p-Del	0.911	1
STK19	10q-Del	0.911	1
8q-Amp	Amp_13q34	0.911	1
11p-Del	Amp_2p24.3	0.911	1
Amp_13q34	Del_5p15.33	0.911	1
ABCA7	Amp_7q31.2	0.912	1
ARID2	Del_9p23	0.912	1
BRAF	10p-Del	0.912	1
C9orf79	Amp_7q31.2	0.912	1
CUL4B	Amp_7q31.2	0.912	1
IRS4	6q-Del	0.912	1
KRAS	Del_6p25.3	0.912	1
NF1	Xp-Del	0.912	1
ZNF292	14q-Del	0.912	1
10p-Del	Xq-Del	0.912	1
12q-Del	9p-Del	0.912	1
Xp-Del	Amp_12p13.32	0.912	1
Amp_1q22	Amp_7q31.2	0.912	1
ABCA7	SMARCA4	0.913	1
ABCA7	18q-Del	0.913	1
C9orf79	SMARCA4	0.913	1
C9orf79	22q-Del	0.913	1
CIB1	Del_13q14.2	0.913	1
CUL4B	SMARCA4	0.913	1
CUL4B	18q-Del	0.913	1
NRAS	Del_13q14.2	0.913	1
PDGFRA	SMARCA4	0.913	1
PRX	SMARCA4	0.913	1
PRX	22q-Del	0.913	1
SETD2	SMARCA4	0.913	1
SMARCA4	STK19	0.913	1
SMARCA4	TNRC18	0.913	1
STK19	18q-Del	0.913	1
Amp_Xp11.22	Del_3q29	0.913	1
Del_9p23	Del_11p15.5	0.913	1
ARID1A	FUBP1	0.914	1
C14orf4	Amp_7q31.2	0.914	1
C4BPA	PIK3CA	0.914	1
DLC1	PIK3CA	0.914	1
FAM47C	FUBP1	0.914	1
G6PC	PIK3CA	0.914	1
PIK3CA	PPL	0.914	1
PIK3CA	RB1	0.914	1
SMOC1	Amp_7q31.2	0.914	1
TMEM216	Amp_7q31.2	0.914	1
Del_3p21.31	Del_6p25.3	0.914	1
Del_5p15.33	Del_6p25.3	0.914	1
Del_5q34	Del_6q22.31	0.914	1
ABCA7	Del_4q34.3	0.915	1
ARID1A	4q-Del	0.915	1
C14orf4	15q-Del	0.915	1
C14orf4	9q-Del	0.915	1
EMG1	PLXNA3	0.915	1
EMG1	SLC6A3	0.915	1
HTRA2	PLXNA3	0.915	1
HTRA2	SLC6A3	0.915	1
HTRA2	ZMIZ1	0.915	1
MED9	TCF12	0.915	1
MED9	15q-Del	0.915	1
MED9	9q-Del	0.915	1
PDGFRA	Del_4q34.3	0.915	1
PLXNA3	ROBO3	0.915	1
PLXNA3	Xq-Del	0.915	1
ROBO3	SLC6A3	0.915	1
SETD2	Del_4q34.3	0.915	1
SLC6A3	Xq-Del	0.915	1
SMOC1	TCF12	0.915	1
SMOC1	15q-Del	0.915	1
SMOC1	9q-Del	0.915	1
STK19	Del_4q34.3	0.915	1
TCF12	TMEM216	0.915	1
TCF12	ZNF709	0.915	1
TMEM216	15q-Del	0.915	1
TMEM216	9q-Del	0.915	1
TNRC18	Amp_8q24.13	0.915	1
ZMIZ1	Xq-Del	0.915	1
ZNF709	15q-Del	0.915	1
ZNF709	9q-Del	0.915	1
Amp_1q22	Del_4q34.3	0.915	1
Amp_8q24.13	Del_8q24.3	0.915	1
Del_4q34.3	Del_8q24.3	0.915	1
KRAS	PIK3R1	0.916	1
KRAS	4p-Del	0.916	1
TCF12	Amp_1q32.1	0.916	1
15q-Del	Amp_1q32.1	0.916	1
ARID2	CIB1	0.917	1
ARID2	KRT3	0.917	1
ARID2	NRAS	0.917	1
ARID2	SRPX	0.917	1
ARID2	Del_6p25.3	0.917	1
ATRX	SLC6A3	0.917	1
C4BPA	Del_10q26.3	0.917	1
CIB1	MYST4	0.917	1
CIB1	Amp_13q34	0.917	1
CIB1	Del_7p22.3	0.917	1
DLC1	Del_2q37.3	0.917	1
DLC1	Del_10q26.3	0.917	1
DLX6	Amp_13q34	0.917	1
DLX6	Del_7p22.3	0.917	1
DNMT3A	KRT3	0.917	1
DNMT3A	NRAS	0.917	1
DNMT3A	SRPX	0.917	1
DNMT3A	Del_6p25.3	0.917	1
ELF4	Amp_13q34	0.917	1
ELF4	Del_7p22.3	0.917	1
G6PC	Del_2q37.3	0.917	1
G6PC	Del_10q26.3	0.917	1
KRT3	MYST4	0.917	1
KRT3	NUDT11	0.917	1
KRT3	Amp_13q34	0.917	1
MYST4	NAP1L2	0.917	1
MYST4	NRAS	0.917	1
MYST4	SRPX	0.917	1
NAP1L2	NUDT11	0.917	1
NAP1L2	Amp_13q34	0.917	1
NAP1L2	Del_7p22.3	0.917	1
NOTCH1	ZBTB20	0.917	1
NRAS	Amp_13q34	0.917	1
NRAS	Del_7p22.3	0.917	1
NUDT11	SRPX	0.917	1
NUDT11	Del_6p25.3	0.917	1
PIK3R1	14q-Del	0.917	1
PLCG1	Del_2q37.3	0.917	1
PTEN	Del_13q14.2	0.917	1
RB1	Del_2q37.3	0.917	1
SMARCB1	Amp_13q34	0.917	1
SMARCB1	Del_7p22.3	0.917	1
SRPX	Amp_13q34	0.917	1
SRPX	Del_7p22.3	0.917	1
TRERF1	Del_2q37.3	0.917	1
11q-Amp	7q-Amp	0.917	1
7q-Amp	Del_8q24.3	0.917	1
4p-Del	Amp_7q31.2	0.917	1
4q-Del	Amp_8q24.13	0.917	1
Amp_19p13.3	Del_1p36.32	0.917	1
Del_6p25.3	Del_7p22.3	0.917	1
NIPBL	ZNF292	0.918	1
NOTCH1	Amp_Xp11.22	0.918	1
PLXNA3	18p-Del	0.918	1
PLXNA3	Amp_11q24.1	0.918	1
Amp_10p15.3	Del_6p25.3	0.918	1
ABCA7	Amp_19p13.3	0.919	1
ATRX	Del_13q14.2	0.919	1
C9orf79	Del_19q13.42	0.919	1
CUL4B	Amp_19p13.3	0.919	1
PIK3CA	18p-Del	0.919	1
SETD2	Amp_19p13.3	0.919	1
STK19	Amp_19p13.3	0.919	1
TNRC18	Amp_19p13.3	0.919	1
10p-Amp	Del_3q29	0.919	1
Amp_1q22	Amp_19p13.3	0.919	1
Del_3q29	Del_12q12	0.919	1
ANKRD36	C4BPA	0.92	1
ANKRD36	DLC1	0.92	1
ANKRD36	G6PC	0.92	1
ANKRD36	NEU2	0.92	1
ANKRD36	PLCG1	0.92	1
ANKRD36	PPL	0.92	1
ANKRD36	RB1	0.92	1
ANKRD36	TRERF1	0.92	1
C14orf4	ZNF292	0.92	1
C14orf4	12q-Del	0.92	1
C14orf4	Del_3q13.31	0.92	1
C4BPA	CREBZF	0.92	1
C4BPA	NOTCH1	0.92	1
C4BPA	PTPN11	0.92	1
C4BPA	RBPJ	0.92	1
C4BPA	Amp_2p24.3	0.92	1
CIB1	Del_11p15.5	0.92	1
CREBZF	DLC1	0.92	1
CREBZF	G6PC	0.92	1
CREBZF	MYT1	0.92	1
CREBZF	NEU2	0.92	1
CREBZF	PLCG1	0.92	1
CREBZF	PPL	0.92	1
CREBZF	RB1	0.92	1
CREBZF	TRERF1	0.92	1
DLC1	PTPN11	0.92	1
DLC1	RBPJ	0.92	1
DLC1	Amp_2p24.3	0.92	1
G6PC	PTPN11	0.92	1
G6PC	RBPJ	0.92	1
G6PC	Amp_2p24.3	0.92	1
KRAS	ZBTB20	0.92	1
KRT3	Del_11p15.5	0.92	1
MED9	ZNF292	0.92	1
MED9	12q-Del	0.92	1
MED9	Del_3q13.31	0.92	1
MYT1	NOTCH1	0.92	1
MYT1	PTPN11	0.92	1
MYT1	RBPJ	0.92	1
MYT1	Amp_2p24.3	0.92	1
NAP1L2	9p-Del	0.92	1
NEU2	PTPN11	0.92	1
NEU2	RBPJ	0.92	1
NEU2	Amp_2p24.3	0.92	1
NOTCH1	RB1	0.92	1
NOTCH1	TRERF1	0.92	1
NRAS	9p-Del	0.92	1
NRAS	Del_11p15.5	0.92	1
PLCG1	R3HDM1	0.92	1
PLCG1	RBPJ	0.92	1
PLCG1	SLC12A7	0.92	1
PLCG1	Amp_2p24.3	0.92	1
PLXNA3	7p-Amp	0.92	1
PPL	RBPJ	0.92	1
PPL	Amp_2p24.3	0.92	1
PTPN11	RB1	0.92	1
PTPN11	TRERF1	0.92	1
RB1	RBPJ	0.92	1
RB1	Amp_2p24.3	0.92	1
RBPJ	TRERF1	0.92	1
SMARCB1	9p-Del	0.92	1
SMOC1	ZNF292	0.92	1
SMOC1	12q-Del	0.92	1
SMOC1	Del_3q13.31	0.92	1
SMOC1	Del_19q13.42	0.92	1
SRPX	9p-Del	0.92	1
SRPX	Del_11p15.5	0.92	1
TMEM216	ZNF292	0.92	1
TMEM216	Del_3q13.31	0.92	1
TRERF1	Amp_2p24.3	0.92	1
ZMIZ1	7p-Amp	0.92	1
ZNF292	ZNF709	0.92	1
ZNF709	12q-Del	0.92	1
ZNF709	Del_3q13.31	0.92	1
4p-Del	Amp_8q24.13	0.92	1
Amp_4q12	Amp_Xp11.22	0.92	1
Amp_7p11.2	Del_8q24.3	0.92	1
BRAF	Del_9p21.3	0.921	1
HTRA2	Del_9p21.3	0.921	1
Xq-Del	Del_9p21.3	0.921	1
ARID1A	18p-Del	0.922	1
C9orf79	10p-Del	0.922	1
CUL4B	10p-Del	0.922	1
PRX	10p-Del	0.922	1
SLC6A3	TP53	0.922	1
STK19	10p-Del	0.922	1
IDH2	KRAS	0.923	1
KRAS	Amp_17q25.1	0.923	1
KRAS	Del_3q29	0.923	1
NF1	18q-Del	0.923	1
PIK3R1	Del_18q23	0.923	1
RBPJ	7q-Amp	0.923	1
7q-Amp	Amp_2p24.3	0.923	1
8q-Amp	4p-Del	0.923	1
4p-Del	Del_5p15.33	0.923	1
4p-Del	Del_18q23	0.923	1
Amp_7q32.3	Amp_17q25.1	0.923	1
Amp_10p15.3	Del_3q13.31	0.923	1
ABCA7	CIB1	0.924	1
ABCA7	KRT3	0.924	1
ABCA7	NAP1L2	0.924	1
ABCA7	SRPX	0.924	1
ANKRD36	EGFR	0.924	1
ATRX	EMG1	0.924	1
BRAF	GAGE2A	0.924	1
BRAF	Xp-Del	0.924	1
C9orf79	CIB1	0.924	1
C9orf79	KRT3	0.924	1
C9orf79	NAP1L2	0.924	1
C9orf79	SRPX	0.924	1
CIB1	CUL4B	0.924	1
CIB1	PDGFRA	0.924	1
CIB1	PRX	0.924	1
CIB1	SETD2	0.924	1
CIB1	STK19	0.924	1
CIB1	TNRC18	0.924	1
CIB1	Amp_1q22	0.924	1
CUL4B	KRT3	0.924	1
CUL4B	NAP1L2	0.924	1
CUL4B	NRAS	0.924	1
CUL4B	SRPX	0.924	1
DLX6	Amp_1q22	0.924	1
EGFR	R3HDM1	0.924	1
EGFR	RBPJ	0.924	1
ELF4	Amp_1q22	0.924	1
EMG1	GAGE2A	0.924	1
EMG1	IRS4	0.924	1
EMG1	Xp-Del	0.924	1
ENGASE	GAGE2A	0.924	1
ENGASE	Xp-Del	0.924	1
G6PC	Amp_7q31.2	0.924	1
GAGE2A	HTRA2	0.924	1
GAGE2A	ROBO3	0.924	1
GAGE2A	ZNF512B	0.924	1
GAGE2A	Xq-Del	0.924	1
GAGE2A	Del_13q14.2	0.924	1
HTRA2	IRS4	0.924	1
IRS4	Xq-Del	0.924	1
KRT3	PDGFRA	0.924	1
KRT3	PRX	0.924	1
KRT3	SETD2	0.924	1
KRT3	STK19	0.924	1
KRT3	TNRC18	0.924	1
KRT3	Amp_1q22	0.924	1
MYST4	PIK3R1	0.924	1
MYT1	Amp_7q31.2	0.924	1
NAP1L2	PDGFRA	0.924	1
NAP1L2	PRX	0.924	1
NAP1L2	SETD2	0.924	1
NAP1L2	STK19	0.924	1
NAP1L2	TNRC18	0.924	1
NAP1L2	Amp_1q22	0.924	1
NF1	Del_8q24.3	0.924	1
NRAS	PDGFRA	0.924	1
NRAS	SETD2	0.924	1
NRAS	STK19	0.924	1
NRAS	TNRC18	0.924	1
NRAS	Amp_1q22	0.924	1
PDGFRA	SRPX	0.924	1
PIK3R1	Amp_13q34	0.924	1
PLCG1	Amp_7q31.2	0.924	1
PRX	SRPX	0.924	1
RB1	Amp_7q31.2	0.924	1
ROBO3	Xp-Del	0.924	1
SETD2	SRPX	0.924	1
SLC6A3	10p-Amp	0.924	1
SMARCB1	Amp_1q22	0.924	1
SRPX	STK19	0.924	1
SRPX	TNRC18	0.924	1
TCF12	11q-Amp	0.924	1
TRERF1	Amp_7q31.2	0.924	1
ZBTB20	Amp_19p13.3	0.924	1
ZNF512B	Xp-Del	0.924	1
11q-Amp	15q-Del	0.924	1
7p-Amp	Amp_17q25.1	0.924	1
7p-Amp	Del_3q29	0.924	1
4p-Del	Del_7p22.3	0.924	1
Amp_10p15.3	Del_10q26.3	0.924	1
ABCA7	Amp_12q14.1	0.925	1
ABCA7	Del_5p15.33	0.925	1
C9orf79	PTEN	0.925	1
C9orf79	Del_5p15.33	0.925	1
EGFR	15q-Del	0.925	1
EGFR	9q-Del	0.925	1
PDGFRA	PTEN	0.925	1
PDGFRA	Del_5p15.33	0.925	1
PRX	8q-Amp	0.925	1
PRX	Del_3p21.31	0.925	1
PRX	Del_5p15.33	0.925	1
PTEN	SETD2	0.925	1
RBPJ	Amp_7p11.2	0.925	1
RET	Amp_7p11.2	0.925	1
SETD2	Amp_12q14.1	0.925	1
SLC12A7	Amp_7p11.2	0.925	1
STK19	8q-Amp	0.925	1
STK19	Amp_12q14.1	0.925	1
STK19	Del_3p21.31	0.925	1
TNRC18	Del_5p15.33	0.925	1
19p-Amp	Del_3q29	0.925	1
8q-Amp	Amp_1q22	0.925	1
Amp_1q22	Amp_12q14.1	0.925	1
Amp_3q26.33	Amp_17q25.1	0.925	1
C14orf4	Amp_Xp11.22	0.926	1
C14orf4	Del_Xq21.1	0.926	1
IDH2	18q-Del	0.926	1
MED9	Amp_Xp11.22	0.926	1
MED9	Del_Xq21.1	0.926	1
ROBO3	Del_6q26	0.926	1
SMARCA4	Amp_17q25.1	0.926	1
SMOC1	Del_Xq21.1	0.926	1
TMEM216	Amp_Xp11.22	0.926	1
TMEM216	Del_Xq21.1	0.926	1
ZNF512B	Del_6q26	0.926	1
ZNF709	Amp_Xp11.22	0.926	1
ZNF709	Del_Xq21.1	0.926	1
12q-Del	Amp_1q32.1	0.926	1
18q-Del	Del_14q24.3	0.926	1
ARID1A	KRAS	0.927	1
CIC	9q-Del	0.927	1
FAM47C	KRAS	0.927	1
FUBP1	NIPBL	0.927	1
KRAS	Amp_4q12	0.927	1
KRAS	Del_5q34	0.927	1
TRERF1	14q-Del	0.927	1
7q-Amp	Amp_13q34	0.927	1
Amp_10p15.3	Del_9p23	0.927	1
Del_5q34	Del_9p23	0.927	1
ARID1A	10p-Amp	0.928	1
ATRX	Amp_11q24.1	0.928	1
FAM47C	Del_12q12	0.928	1
14q-Del	Del_18q23	0.928	1
19q-Del	9q-Del	0.928	1
CIB1	7p-Amp	0.929	1
DLX6	7p-Amp	0.929	1
ELF4	7p-Amp	0.929	1
HTRA2	Del_11p15.1	0.929	1
IDH2	7q-Amp	0.929	1
PLXNA3	SMARCA4	0.929	1
PLXNA3	18q-Del	0.929	1
SMARCA4	ZMIZ1	0.929	1
SMARCB1	7p-Amp	0.929	1
SMOC1	Del_9p23	0.929	1
SRPX	7p-Amp	0.929	1
ZNF709	Del_9p23	0.929	1
7q-Amp	Amp_17q25.1	0.929	1
7q-Amp	Del_3q29	0.929	1
Xq-Del	Del_11p15.1	0.929	1
ANKRD36	Del_14q24.3	0.93	1
ARID2	FUBP1	0.93	1
ARID2	ZBTB20	0.93	1
ARID2	Del_6q22.31	0.93	1
CUL4B	Del_6p25.3	0.93	1
FUBP1	MYST4	0.93	1
FUBP1	NUDT11	0.93	1
FUBP1	Del_7p22.3	0.93	1
MYST4	13q-Del	0.93	1
MYT1	Del_22q13.31	0.93	1
NUDT11	ZBTB20	0.93	1
PIK3CA	Amp_4q12	0.93	1
PRX	Del_6p25.3	0.93	1
R3HDM1	Del_14q24.3	0.93	1
RB1	Del_18q23	0.93	1
SLC12A7	Del_14q24.3	0.93	1
TRERF1	Del_18q23	0.93	1
13q-Del	Amp_12p13.32	0.93	1
Amp_1q22	Del_6p25.3	0.93	1
Del_1p36.32	Del_4q34.3	0.93	1
ANKRD36	6q-Del	0.931	1
BRAF	FUBP1	0.931	1
C14orf4	19p-Amp	0.931	1
CIB1	PLXNA3	0.931	1
CIB1	SLC6A3	0.931	1
CIB1	ZMIZ1	0.931	1
CREBZF	6q-Del	0.931	1
EMG1	FUBP1	0.931	1
EMG1	13q-Del	0.931	1
ENGASE	FUBP1	0.931	1
ENGASE	Del_6q22.31	0.931	1
FUBP1	ROBO3	0.931	1
KRAS	NIPBL	0.931	1
KRT3	PLXNA3	0.931	1
KRT3	SLC6A3	0.931	1
KRT3	ZMIZ1	0.931	1
MED9	19p-Amp	0.931	1
MED9	Amp_3q26.33	0.931	1
NAP1L2	PLXNA3	0.931	1
NAP1L2	SLC6A3	0.931	1
NAP1L2	ZMIZ1	0.931	1
NF1	RET	0.931	1
NF1	SLC12A7	0.931	1
NRAS	PLXNA3	0.931	1
NRAS	SLC6A3	0.931	1
NRAS	ZMIZ1	0.931	1
PLXNA3	SRPX	0.931	1
ROBO3	Del_6q22.31	0.931	1
SLC6A3	SRPX	0.931	1
SMOC1	19p-Amp	0.931	1
SMOC1	Amp_3q26.33	0.931	1
SRPX	ZMIZ1	0.931	1
TMEM216	19p-Amp	0.931	1
TMEM216	Amp_3q26.33	0.931	1
ZNF512B	Del_6q22.31	0.931	1
ZNF709	19p-Amp	0.931	1
ZNF709	Amp_3q26.33	0.931	1
6q-Del	Amp_2p24.3	0.931	1
Amp_3q26.33	Del_5q34	0.931	1
C4BPA	PLCG1	0.932	1
DLC1	PLCG1	0.932	1
G6PC	PLCG1	0.932	1
IDH1	8q-Amp	0.932	1
IRS4	Del_11p15.5	0.932	1
MYT1	PLCG1	0.932	1
NEU2	PLCG1	0.932	1
NIPBL	18p-Del	0.932	1
PLCG1	PPL	0.932	1
PLCG1	RB1	0.932	1
PLCG1	TRERF1	0.932	1
PTEN	Del_6q26	0.932	1
Xp-Del	Del_11p15.5	0.932	1
Amp_8q24.13	Del_4q34.3	0.932	1
ANKRD36	BRAF	0.933	1
ANKRD36	EMG1	0.933	1
ANKRD36	ENGASE	0.933	1
ANKRD36	HTRA2	0.933	1
ANKRD36	ROBO3	0.933	1
ANKRD36	Xq-Del	0.933	1
BRAF	CREBZF	0.933	1
BRAF	PTPN11	0.933	1
BRAF	RBPJ	0.933	1
BRAF	Amp_2p24.3	0.933	1
CREBZF	EMG1	0.933	1
CREBZF	ENGASE	0.933	1
CREBZF	HTRA2	0.933	1
CREBZF	ROBO3	0.933	1
CREBZF	ZNF512B	0.933	1
CREBZF	Xq-Del	0.933	1
EMG1	PTPN11	0.933	1
EMG1	R3HDM1	0.933	1
EMG1	RBPJ	0.933	1
EMG1	RET	0.933	1
EMG1	SLC12A7	0.933	1
EMG1	Amp_2p24.3	0.933	1
ENGASE	PTPN11	0.933	1
ENGASE	RBPJ	0.933	1
ENGASE	Amp_2p24.3	0.933	1
HTRA2	PTPN11	0.933	1
HTRA2	R3HDM1	0.933	1
HTRA2	RET	0.933	1
HTRA2	SLC12A7	0.933	1
HTRA2	Amp_2p24.3	0.933	1
PTPN11	ROBO3	0.933	1
PTPN11	ZNF512B	0.933	1
PTPN11	Xq-Del	0.933	1
R3HDM1	ROBO3	0.933	1
R3HDM1	Xq-Del	0.933	1
RBPJ	ROBO3	0.933	1
RBPJ	ZNF512B	0.933	1
RBPJ	Xq-Del	0.933	1
RET	ROBO3	0.933	1
RET	Xq-Del	0.933	1
ROBO3	SLC12A7	0.933	1
SLC12A7	Xq-Del	0.933	1
TCF12	15q-Del	0.933	1
TCF12	9q-Del	0.933	1
11q-Amp	Del_3q13.31	0.933	1
14q-Del	Del_1p32.3	0.933	1
14q-Del	Del_13q14.2	0.933	1
15q-Del	9q-Del	0.933	1
Xq-Del	Amp_2p24.3	0.933	1
Amp_7p11.2	Amp_17q25.1	0.933	1
Amp_12q14.1	Del_9p21.3	0.933	1
Amp_19p13.3	Del_3q29	0.933	1
G6PC	11p-Del	0.934	1
G6PC	Amp_10p15.3	0.934	1
IRS4	18p-Del	0.934	1
MYT1	11p-Del	0.934	1
TP53	Amp_4q12	0.934	1
Xp-Del	Amp_11q24.1	0.934	1
ARID1A	SMARCA4	0.935	1
ARID1A	18q-Del	0.935	1
CIC	ENGASE	0.935	1
CIC	ZNF512B	0.935	1
EGFR	6q-Del	0.935	1
KRAS	Amp_1q32.1	0.935	1
TP53	9p-Del	0.935	1
15q-Del	6q-Del	0.935	1
22q-Del	Del_5q34	0.935	1
ABCA7	PIK3R1	0.936	1
ABCA7	4p-Del	0.936	1
ARID2	IDH2	0.936	1
CUL4B	PIK3R1	0.936	1
DNMT3A	IDH2	0.936	1
PDGFRA	PIK3R1	0.936	1
PDGFRA	4p-Del	0.936	1
PIK3R1	SETD2	0.936	1
PIK3R1	STK19	0.936	1
PIK3R1	TNRC18	0.936	1
TNRC18	4p-Del	0.936	1
Amp_1q22	Del_9p23	0.936	1
Amp_19p13.3	Del_19q13.42	0.936	1
Del_3q29	Del_7p22.3	0.936	1
ARID2	C14orf4	0.937	1
ARID2	MED9	0.937	1
ARID2	SMOC1	0.937	1
ARID2	TMEM216	0.937	1
ARID2	ZNF709	0.937	1
C14orf4	DNMT3A	0.937	1
C14orf4	MYST4	0.937	1
C14orf4	NUDT11	0.937	1
C14orf4	7q-Amp	0.937	1
C14orf4	Amp_13q34	0.937	1
C14orf4	Del_7p22.3	0.937	1
DNMT3A	MED9	0.937	1
DNMT3A	SMOC1	0.937	1
DNMT3A	TMEM216	0.937	1
DNMT3A	ZNF709	0.937	1
KRT3	10q-Del	0.937	1
MED9	MYST4	0.937	1
MED9	NUDT11	0.937	1
MED9	Amp_13q34	0.937	1
MED9	Del_7p22.3	0.937	1
MYST4	SMOC1	0.937	1
MYST4	TMEM216	0.937	1
MYST4	ZNF709	0.937	1
NUDT11	SMOC1	0.937	1
NUDT11	TMEM216	0.937	1
SMOC1	7q-Amp	0.937	1
SMOC1	Amp_13q34	0.937	1
SMOC1	Del_7p22.3	0.937	1
TMEM216	7q-Amp	0.937	1
TMEM216	Amp_13q34	0.937	1
TMEM216	Del_7p22.3	0.937	1
ZNF709	Amp_13q34	0.937	1
ZNF709	Del_7p22.3	0.937	1
Amp_7p11.2	Amp_8q24.13	0.937	1
Amp_12q14.1	Del_11p15.1	0.937	1
ARID1A	Del_19q13.42	0.938	1
C14orf4	Amp_7p11.2	0.938	1
NIPBL	19p-Amp	0.938	1
PIK3CA	18q-Del	0.938	1
PLXNA3	PTEN	0.938	1
PTEN	SLC6A3	0.938	1
PTEN	ZMIZ1	0.938	1
SLC6A3	Del_3p21.31	0.938	1
TMEM216	Amp_7p11.2	0.938	1
ZBTB20	Del_6p25.3	0.938	1
ZMIZ1	8q-Amp	0.938	1
ZMIZ1	Del_5p15.33	0.938	1
14q-Del	Amp_17q25.1	0.938	1
9q-Del	Amp_7p11.2	0.938	1
ARID1A	NOTCH1	0.939	1
BRAF	PIK3CA	0.939	1
CIB1	GAGE2A	0.939	1
CIB1	IRS4	0.939	1
CIB1	Xp-Del	0.939	1
CIB1	Amp_8q24.13	0.939	1
DLX6	GAGE2A	0.939	1
DLX6	Xp-Del	0.939	1
ELF4	GAGE2A	0.939	1
ELF4	Xp-Del	0.939	1
GAGE2A	KRT3	0.939	1
GAGE2A	NAP1L2	0.939	1
GAGE2A	NRAS	0.939	1
GAGE2A	SMARCB1	0.939	1
GAGE2A	SRPX	0.939	1
GAGE2A	Del_12q12	0.939	1
IDH1	NUDT11	0.939	1
IDH1	Del_7p22.3	0.939	1
IDH2	8q-Amp	0.939	1
IRS4	KRT3	0.939	1
IRS4	NAP1L2	0.939	1
IRS4	NRAS	0.939	1
IRS4	SRPX	0.939	1
IRS4	Del_12q12	0.939	1
KRAS	Del_8q24.3	0.939	1
KRT3	Xp-Del	0.939	1
KRT3	Amp_8q24.13	0.939	1
KRT3	Del_4q34.3	0.939	1
NAP1L2	Xp-Del	0.939	1
NRAS	Xp-Del	0.939	1
NRAS	Del_4q34.3	0.939	1
PIK3CA	ZNF512B	0.939	1
SMARCB1	Xp-Del	0.939	1
SMARCB1	Del_4q34.3	0.939	1
SRPX	Xp-Del	0.939	1
STK19	Del_6q26	0.939	1
13q-Del	14q-Del	0.939	1
Amp_1q22	Del_6q26	0.939	1
Amp_3q26.33	Del_13q14.2	0.939	1
Amp_12q14.1	Amp_17q25.1	0.939	1
Del_3q29	Del_5p15.33	0.939	1
DNMT3A	PIK3CA	0.94	1
7q-Amp	Del_3p21.31	0.94	1
Amp_17q25.1	Del_10q26.3	0.94	1
ABCA7	ZBTB20	0.941	1
ARID1A	ARID2	0.941	1
ARID1A	MYST4	0.941	1
ARID1A	NUDT11	0.941	1
ARID1A	Del_7p22.3	0.941	1
ARID2	FAM47C	0.941	1
ARID2	Amp_4q12	0.941	1
ARID2	Del_5q34	0.941	1
C14orf4	Del_14q24.3	0.941	1
C9orf79	ZBTB20	0.941	1
CIC	NUDT11	0.941	1
DNMT3A	Amp_4q12	0.941	1
MED9	Del_14q24.3	0.941	1
MYST4	Amp_4q12	0.941	1
NUDT11	Amp_4q12	0.941	1
SETD2	ZBTB20	0.941	1
STK19	ZBTB20	0.941	1
ZNF292	9q-Del	0.941	1
10q-Del	Amp_17q25.1	0.941	1
12q-Del	15q-Del	0.941	1
Amp_4q12	Amp_13q34	0.941	1
Amp_13q34	Del_5q34	0.941	1
Del_5q34	Del_7p22.3	0.941	1
ABCA7	Del_11p15.1	0.942	1
CUL4B	Del_11p15.1	0.942	1
HTRA2	Del_2q37.3	0.942	1
KRAS	TCF12	0.942	1
KRAS	15q-Del	0.942	1
KRAS	9q-Del	0.942	1
NEU2	Del_9p23	0.942	1
PDGFRA	Del_11p15.1	0.942	1
PTEN	Del_6q22.31	0.942	1
11q-Amp	Amp_Xp11.22	0.942	1
Xq-Del	Del_2q37.3	0.942	1
Amp_7q32.3	Del_2q37.3	0.942	1
Amp_10p15.3	Del_22q13.31	0.942	1
Del_3p21.31	Del_6q22.31	0.942	1
Del_5p15.33	Del_6q22.31	0.942	1
Del_8q24.3	Del_Xq21.1	0.942	1
ABCA7	C14orf4	0.943	1
ABCA7	MED9	0.943	1
ABCA7	SMOC1	0.943	1
ABCA7	TMEM216	0.943	1
ABCA7	ZNF709	0.943	1
ATRX	SMOC1	0.943	1
BRAF	PLCG1	0.943	1
C14orf4	C9orf79	0.943	1
C14orf4	PDGFRA	0.943	1
C14orf4	PRX	0.943	1
C14orf4	SETD2	0.943	1
C14orf4	STK19	0.943	1
C14orf4	TNRC18	0.943	1
C4BPA	EMG1	0.943	1
C4BPA	HTRA2	0.943	1
C4BPA	ROBO3	0.943	1
C4BPA	Xq-Del	0.943	1
C9orf79	MED9	0.943	1
C9orf79	SMOC1	0.943	1
C9orf79	TMEM216	0.943	1
C9orf79	ZNF709	0.943	1
CUL4B	MED9	0.943	1
CUL4B	SMOC1	0.943	1
CUL4B	TMEM216	0.943	1
CUL4B	ZNF709	0.943	1
DLC1	EMG1	0.943	1
DLC1	HTRA2	0.943	1
DLC1	ROBO3	0.943	1
DLC1	Xq-Del	0.943	1
DLX6	TP53	0.943	1
EGFR	MYT1	0.943	1
EGFR	NEU2	0.943	1
EGFR	PLCG1	0.943	1
EGFR	PPL	0.943	1
EMG1	G6PC	0.943	1
EMG1	MYT1	0.943	1
EMG1	NEU2	0.943	1
EMG1	PLCG1	0.943	1
EMG1	PPL	0.943	1
EMG1	RB1	0.943	1
EMG1	TRERF1	0.943	1
ENGASE	PLCG1	0.943	1
G6PC	HTRA2	0.943	1
G6PC	ROBO3	0.943	1
G6PC	Xq-Del	0.943	1
GAGE2A	22q-Del	0.943	1
HTRA2	MYT1	0.943	1
HTRA2	NEU2	0.943	1
HTRA2	PLCG1	0.943	1
HTRA2	PPL	0.943	1
HTRA2	RB1	0.943	1
HTRA2	TRERF1	0.943	1
IDH2	Del_18q23	0.943	1
IRS4	SMARCA4	0.943	1
IRS4	18q-Del	0.943	1
IRS4	22q-Del	0.943	1
KRT3	10p-Del	0.943	1
MED9	PDGFRA	0.943	1
MED9	PRX	0.943	1
MED9	SETD2	0.943	1
MED9	STK19	0.943	1
MED9	TNRC18	0.943	1
MED9	Amp_1q22	0.943	1
MYT1	ROBO3	0.943	1
MYT1	Xq-Del	0.943	1
NEU2	ROBO3	0.943	1
NEU2	Xq-Del	0.943	1
NIPBL	SMARCA4	0.943	1
NIPBL	18q-Del	0.943	1
PDGFRA	SMOC1	0.943	1
PDGFRA	TMEM216	0.943	1
PDGFRA	ZNF709	0.943	1
PIK3R1	Del_13q14.2	0.943	1
PLCG1	ROBO3	0.943	1
PLCG1	ZNF512B	0.943	1
PLCG1	Xq-Del	0.943	1
PPL	ROBO3	0.943	1
PPL	Xq-Del	0.943	1
PRX	SMOC1	0.943	1
PRX	TMEM216	0.943	1
PRX	ZNF709	0.943	1
RB1	ROBO3	0.943	1
RB1	Xq-Del	0.943	1
ROBO3	TRERF1	0.943	1
SETD2	SMOC1	0.943	1
SETD2	TMEM216	0.943	1
SETD2	ZNF709	0.943	1
SMARCB1	TP53	0.943	1
SMOC1	STK19	0.943	1
SMOC1	TNRC18	0.943	1
SMOC1	Amp_1q22	0.943	1
STK19	ZNF709	0.943	1
TMEM216	TNRC18	0.943	1
TMEM216	Amp_1q22	0.943	1
TNRC18	ZNF709	0.943	1
TRERF1	Xq-Del	0.943	1
ZMIZ1	Del_6p25.3	0.943	1
ZNF709	Amp_1q22	0.943	1
10p-Amp	Del_9p23	0.943	1
14q-Del	18p-Del	0.943	1
18q-Del	Xp-Del	0.943	1
22q-Del	Xp-Del	0.943	1
22q-Del	Del_2q37.3	0.943	1
Del_6q26	Del_8q24.3	0.943	1
ARID2	Del_2q37.3	0.944	1
BRAF	NOTCH1	0.944	1
EMG1	NOTCH1	0.944	1
ENGASE	NOTCH1	0.944	1
NOTCH1	ZNF512B	0.944	1
6q-Del	Del_13q14.2	0.944	1
Amp_7p11.2	Del_3p21.31	0.944	1
Amp_8q24.13	Del_3q29	0.944	1
Amp_12p13.32	Del_13q14.2	0.944	1
ABCA7	13q-Del	0.945	1
ANKRD36	TP53	0.945	1
CUL4B	FUBP1	0.945	1
FUBP1	PRX	0.945	1
FUBP1	SETD2	0.945	1
HTRA2	Amp_7q32.3	0.945	1
PIK3R1	ZBTB20	0.945	1
R3HDM1	TP53	0.945	1
SETD2	13q-Del	0.945	1
STK19	Del_6q22.31	0.945	1
ZBTB20	4p-Del	0.945	1
ZNF292	Del_4q34.3	0.945	1
Amp_3q26.33	Del_22q13.31	0.945	1
ABCA7	Del_3q29	0.946	1
ANKRD36	CIB1	0.946	1
ANKRD36	DLX6	0.946	1
ANKRD36	ELF4	0.946	1
ANKRD36	KRT3	0.946	1
ANKRD36	NAP1L2	0.946	1
ANKRD36	NRAS	0.946	1
ANKRD36	SMARCB1	0.946	1
ANKRD36	SRPX	0.946	1
C9orf79	IDH2	0.946	1
CIB1	CREBZF	0.946	1
CIB1	PTPN11	0.946	1
CIB1	R3HDM1	0.946	1
CIB1	RET	0.946	1
CIB1	Amp_2p24.3	0.946	1
CREBZF	DLX6	0.946	1
CREBZF	ELF4	0.946	1
CREBZF	KRT3	0.946	1
CREBZF	NAP1L2	0.946	1
CREBZF	NRAS	0.946	1
CREBZF	SMARCB1	0.946	1
CREBZF	SRPX	0.946	1
CUL4B	Amp_17q25.1	0.946	1
DLX6	PTPN11	0.946	1
DLX6	RBPJ	0.946	1
DLX6	Amp_2p24.3	0.946	1
ELF4	PTPN11	0.946	1
ELF4	RBPJ	0.946	1
ELF4	Amp_2p24.3	0.946	1
IDH2	STK19	0.946	1
IDH2	TNRC18	0.946	1
KRAS	ZNF292	0.946	1
KRAS	12q-Del	0.946	1
KRAS	Del_3q13.31	0.946	1
KRT3	PTPN11	0.946	1
KRT3	R3HDM1	0.946	1
KRT3	RBPJ	0.946	1
KRT3	RET	0.946	1
KRT3	SLC12A7	0.946	1
KRT3	Amp_2p24.3	0.946	1
NAP1L2	PTPN11	0.946	1
NAP1L2	R3HDM1	0.946	1
NAP1L2	RET	0.946	1
NAP1L2	SLC12A7	0.946	1
NAP1L2	Amp_2p24.3	0.946	1
NRAS	PTPN11	0.946	1
NRAS	R3HDM1	0.946	1
NRAS	RBPJ	0.946	1
NRAS	RET	0.946	1
NRAS	Amp_2p24.3	0.946	1
PDGFRA	Del_3q29	0.946	1
PRX	Del_3q29	0.946	1
PTPN11	SMARCB1	0.946	1
PTPN11	SRPX	0.946	1
R3HDM1	SRPX	0.946	1
RBPJ	SMARCB1	0.946	1
RBPJ	SRPX	0.946	1
RET	SRPX	0.946	1
RET	4q-Del	0.946	1
SLC12A7	SRPX	0.946	1
SLC12A7	4q-Del	0.946	1
SMARCB1	Amp_2p24.3	0.946	1
SRPX	Amp_2p24.3	0.946	1
STK19	Amp_17q25.1	0.946	1
11p-Del	4q-Del	0.946	1
9q-Del	Amp_7q32.3	0.946	1
Amp_1q22	Del_3q29	0.946	1
ABCA7	7q-Amp	0.947	1
ARID1A	Del_3p21.31	0.947	1
ARID2	NIPBL	0.947	1
C9orf79	7q-Amp	0.947	1
CUL4B	7q-Amp	0.947	1
DNMT3A	NIPBL	0.947	1
FAM47C	PTEN	0.947	1
GAGE2A	Amp_19p13.3	0.947	1
MYST4	NIPBL	0.947	1
NIPBL	Amp_13q34	0.947	1
PIK3R1	PLXNA3	0.947	1
PIK3R1	SLC6A3	0.947	1
RBPJ	Del_13q14.2	0.947	1
RET	Del_13q14.2	0.947	1
7p-Amp	Del_3p21.31	0.947	1
8q-Amp	Del_5q34	0.947	1
9p-Del	Amp_3q26.33	0.947	1
Amp_4q12	Amp_7p11.2	0.947	1
C14orf4	PLXNA3	0.948	1
C14orf4	SLC6A3	0.948	1
C14orf4	ZMIZ1	0.948	1
MED9	PLXNA3	0.948	1
MED9	SLC6A3	0.948	1
MED9	ZMIZ1	0.948	1
NOTCH1	SMARCA4	0.948	1
PLXNA3	SMOC1	0.948	1
PLXNA3	TMEM216	0.948	1
PLXNA3	ZNF709	0.948	1
SLC6A3	SMOC1	0.948	1
SLC6A3	TMEM216	0.948	1
SLC6A3	ZNF709	0.948	1
SMARCA4	4q-Del	0.948	1
SMARCA4	Del_4q34.3	0.948	1
SMOC1	ZMIZ1	0.948	1
TMEM216	ZMIZ1	0.948	1
ZMIZ1	ZNF709	0.948	1
ZNF292	Del_3q13.31	0.948	1
18q-Del	4q-Del	0.948	1
18q-Del	Del_4q34.3	0.948	1
22q-Del	4q-Del	0.948	1
9q-Del	Del_Xq21.1	0.948	1
Amp_1q22	Del_9p21.3	0.948	1
Amp_7q31.2	Amp_17q25.1	0.948	1
Amp_7q31.2	Del_3q29	0.948	1
Amp_10p15.3	Amp_17q25.1	0.948	1
Amp_10p15.3	Del_3q29	0.948	1
C4BPA	NF1	0.949	1
CREBZF	18p-Del	0.949	1
DLC1	NF1	0.949	1
DLC1	Amp_12p13.32	0.949	1
ENGASE	14q-Del	0.949	1
G6PC	NF1	0.949	1
MYT1	Amp_12p13.32	0.949	1
NEU2	NF1	0.949	1
NEU2	Amp_12p13.32	0.949	1
NF1	PPL	0.949	1
NF1	TRERF1	0.949	1
NIPBL	NOTCH1	0.949	1
R3HDM1	18p-Del	0.949	1
RB1	6q-Del	0.949	1
RBPJ	18p-Del	0.949	1
RET	18p-Del	0.949	1
SLC12A7	Amp_11q24.1	0.949	1
11q-Amp	18p-Del	0.949	1
14q-Del	Xq-Del	0.949	1
9p-Del	Amp_11q24.1	0.949	1
Amp_2p24.3	Amp_11q24.1	0.949	1
ABCA7	Amp_7p11.2	0.95	1
CUL4B	Amp_7p11.2	0.95	1
G6PC	7q-Amp	0.95	1
KRAS	Amp_Xp11.22	0.95	1
KRAS	Del_Xq21.1	0.95	1
MYT1	7q-Amp	0.95	1
NEU2	7q-Amp	0.95	1
PLCG1	7q-Amp	0.95	1
PRX	Amp_7p11.2	0.95	1
RB1	7q-Amp	0.95	1
SETD2	Amp_7p11.2	0.95	1
STK19	Amp_7p11.2	0.95	1
7q-Amp	Amp_11q24.1	0.95	1
Amp_3q26.33	Del_8q24.3	0.95	1
Amp_Xp11.22	Del_9p21.3	0.95	1
Del_6q22.31	Del_8q24.3	0.95	1
ABCA7	ARID1A	0.951	1
ABCA7	FAM47C	0.951	1
ARID1A	C9orf79	0.951	1
ARID1A	CUL4B	0.951	1
ARID1A	PDGFRA	0.951	1
ARID1A	SETD2	0.951	1
ARID1A	STK19	0.951	1
ARID1A	TNRC18	0.951	1
BRAF	Del_22q13.31	0.951	1
C9orf79	FAM47C	0.951	1
CREBZF	Del_9p21.3	0.951	1
CUL4B	FAM47C	0.951	1
FAM47C	PDGFRA	0.951	1
FAM47C	PRX	0.951	1
FAM47C	SETD2	0.951	1
FAM47C	STK19	0.951	1
FAM47C	TNRC18	0.951	1
HTRA2	Del_22q13.31	0.951	1
IDH2	4p-Del	0.951	1
IRS4	PTEN	0.951	1
IRS4	Del_3p21.31	0.951	1
IRS4	Del_5p15.33	0.951	1
PDGFRA	Del_5q34	0.951	1
PRX	Amp_4q12	0.951	1
PTEN	Xp-Del	0.951	1
PTPN11	Del_9p21.3	0.951	1
RBPJ	Del_9p21.3	0.951	1
ROBO3	Del_18q23	0.951	1
SETD2	Amp_4q12	0.951	1
SETD2	Del_5q34	0.951	1
TNRC18	Del_5q34	0.951	1
10p-Del	Amp_17q25.1	0.951	1
Xp-Del	Amp_12q14.1	0.951	1
Xp-Del	Del_3p21.31	0.951	1
Xq-Del	Del_22q13.31	0.951	1
Amp_2p24.3	Del_9p21.3	0.951	1
ANKRD36	10p-Amp	0.952	1
ARID1A	Del_6p25.3	0.952	1
BRAF	EMG1	0.952	1
BRAF	HTRA2	0.952	1
BRAF	ROBO3	0.952	1
BRAF	Xq-Del	0.952	1
EMG1	ENGASE	0.952	1
EMG1	HTRA2	0.952	1
EMG1	ROBO3	0.952	1
EMG1	ZNF512B	0.952	1
EMG1	Xq-Del	0.952	1
ENGASE	HTRA2	0.952	1
ENGASE	ROBO3	0.952	1
ENGASE	Xq-Del	0.952	1
G6PC	Amp_7p11.2	0.952	1
HTRA2	ROBO3	0.952	1
HTRA2	ZNF512B	0.952	1
MED9	Del_13q14.2	0.952	1
MYT1	Amp_7p11.2	0.952	1
PLXNA3	ZBTB20	0.952	1
RBPJ	10p-Amp	0.952	1
ROBO3	ZNF512B	0.952	1
ROBO3	Xq-Del	0.952	1
SLC6A3	ZBTB20	0.952	1
SMOC1	Del_13q14.2	0.952	1
TMEM216	Del_13q14.2	0.952	1
ZNF512B	Xq-Del	0.952	1
6q-Del	Del_2q37.3	0.952	1
Amp_1q32.1	Amp_13q34	0.952	1
Amp_2p24.3	Del_12q12	0.952	1
Amp_4q12	Del_6p25.3	0.952	1
Del_5q34	Del_22q13.31	0.952	1
ANKRD36	9p-Del	0.953	1
ANKRD36	Del_11p15.5	0.953	1
KRT3	Del_6q26	0.953	1
RBPJ	9p-Del	0.953	1
SLC12A7	9p-Del	0.953	1
SRPX	Del_6q26	0.953	1
9p-Del	Amp_2p24.3	0.953	1
C14orf4	GAGE2A	0.954	1
C14orf4	IRS4	0.954	1
C14orf4	Xp-Del	0.954	1
C4BPA	CIB1	0.954	1
C4BPA	KRT3	0.954	1
C4BPA	NAP1L2	0.954	1
C4BPA	NRAS	0.954	1
CIB1	DLC1	0.954	1
CIB1	G6PC	0.954	1
CIB1	MYT1	0.954	1
CIB1	NEU2	0.954	1
CIB1	PLCG1	0.954	1
CIB1	PPL	0.954	1
CIB1	RB1	0.954	1
CIB1	TRERF1	0.954	1
CIB1	Del_11p15.1	0.954	1
CUL4B	PIK3CA	0.954	1
DLC1	KRT3	0.954	1
DLC1	NAP1L2	0.954	1
DLC1	NRAS	0.954	1
DLC1	SRPX	0.954	1
DLX6	PLCG1	0.954	1
ELF4	PLCG1	0.954	1
ENGASE	Amp_10p15.3	0.954	1
G6PC	NAP1L2	0.954	1
G6PC	NRAS	0.954	1
G6PC	SRPX	0.954	1
GAGE2A	MED9	0.954	1
GAGE2A	SMOC1	0.954	1
GAGE2A	TMEM216	0.954	1
GAGE2A	ZNF709	0.954	1
GAGE2A	Del_6p25.3	0.954	1
HTRA2	11p-Del	0.954	1
IRS4	MED9	0.954	1
IRS4	SMOC1	0.954	1
IRS4	TMEM216	0.954	1
IRS4	ZNF709	0.954	1
IRS4	Del_6p25.3	0.954	1
KRAS	19p-Amp	0.954	1
KRAS	Amp_3q26.33	0.954	1
KRT3	MYT1	0.954	1
KRT3	NEU2	0.954	1
KRT3	PLCG1	0.954	1
KRT3	PPL	0.954	1
KRT3	RB1	0.954	1
KRT3	TRERF1	0.954	1
KRT3	Del_11p15.1	0.954	1
MED9	Xp-Del	0.954	1
MYT1	NAP1L2	0.954	1
MYT1	NRAS	0.954	1
MYT1	SRPX	0.954	1
NAP1L2	NEU2	0.954	1
NAP1L2	PLCG1	0.954	1
NAP1L2	PPL	0.954	1
NAP1L2	RB1	0.954	1
NAP1L2	TRERF1	0.954	1
NEU2	NRAS	0.954	1
NEU2	SRPX	0.954	1
NRAS	PLCG1	0.954	1
NRAS	PPL	0.954	1
NRAS	RB1	0.954	1
NRAS	TRERF1	0.954	1
NRAS	Del_11p15.1	0.954	1
PIK3CA	PRX	0.954	1
PIK3CA	SETD2	0.954	1
PIK3CA	TNRC18	0.954	1
PIK3CA	Del_3p21.31	0.954	1
PLCG1	SMARCB1	0.954	1
PLCG1	SRPX	0.954	1
PPL	SRPX	0.954	1
RB1	SRPX	0.954	1
ROBO3	Amp_10p15.3	0.954	1
SMARCA4	Amp_11q24.1	0.954	1
SMARCA4	Del_9p23	0.954	1
SMOC1	Xp-Del	0.954	1
SRPX	TRERF1	0.954	1
SRPX	Del_11p15.1	0.954	1
TMEM216	Xp-Del	0.954	1
ZNF709	Xp-Del	0.954	1
11q-Amp	Del_1p36.32	0.954	1
11p-Del	Xq-Del	0.954	1
18p-Del	22q-Del	0.954	1
18q-Del	Amp_11q24.1	0.954	1
Del_5q34	Del_10q26.3	0.954	1
Del_7p22.3	Del_19q13.42	0.954	1
ARID2	Del_13q14.2	0.955	1
NOTCH1	Amp_19p13.3	0.955	1
PPL	Del_14q24.3	0.955	1
ZNF292	Amp_Xp11.22	0.955	1
12q-Del	Amp_Xp11.22	0.955	1
Del_3q13.31	Del_Xq21.1	0.955	1
Del_12q12	Del_22q13.31	0.955	1
ANKRD36	SMARCA4	0.956	1
ANKRD36	22q-Del	0.956	1
ATRX	Del_3q13.31	0.956	1
CREBZF	18q-Del	0.956	1
CUL4B	NIPBL	0.956	1
EMG1	Del_1p36.32	0.956	1
FUBP1	KRT3	0.956	1
FUBP1	NRAS	0.956	1
FUBP1	SMARCB1	0.956	1
HTRA2	Amp_7q31.2	0.956	1
NIPBL	PDGFRA	0.956	1
NIPBL	PRX	0.956	1
NIPBL	SETD2	0.956	1
NIPBL	STK19	0.956	1
NIPBL	TNRC18	0.956	1
NRAS	13q-Del	0.956	1
NUDT11	Del_22q13.31	0.956	1
PTPN11	22q-Del	0.956	1
R3HDM1	SMARCA4	0.956	1
R3HDM1	18q-Del	0.956	1
RBPJ	18q-Del	0.956	1
RET	SMARCA4	0.956	1
RET	18q-Del	0.956	1
SLC12A7	SMARCA4	0.956	1
SLC12A7	22q-Del	0.956	1
SRPX	Del_6q22.31	0.956	1
TMEM216	9p-Del	0.956	1
TP53	Amp_17q25.1	0.956	1
ZNF709	Del_11p15.5	0.956	1
11q-Amp	Del_1p32.3	0.956	1
19p-Amp	15q-Del	0.956	1
19p-Amp	9q-Del	0.956	1
15q-Del	Amp_3q26.33	0.956	1
4q-Del	Del_11p15.1	0.956	1
Amp_13q34	Del_18q23	0.956	1
Amp_13q34	Del_22q13.31	0.956	1
Del_7p22.3	Del_22q13.31	0.956	1
ABCA7	Del_2q37.3	0.957	1
DNMT3A	11q-Amp	0.957	1
DNMT3A	Del_8q24.3	0.957	1
EMG1	Del_1p32.3	0.957	1
MYST4	11q-Amp	0.957	1
11q-Amp	Amp_13q34	0.957	1
11q-Amp	Del_7p22.3	0.957	1
14q-Del	18q-Del	0.957	1
15q-Del	Del_10q26.3	0.957	1
18p-Del	9q-Del	0.957	1
9q-Del	Del_10q26.3	0.957	1
9q-Del	Del_11p15.1	0.957	1
Amp_1q22	Del_2q37.3	0.957	1
Amp_8q24.13	Del_Xq21.1	0.957	1
Del_5q34	Del_9p21.3	0.957	1
Del_7p22.3	Del_8q24.3	0.957	1
ARID1A	PIK3R1	0.958	1
ARID1A	4p-Del	0.958	1
ARID2	KRAS	0.958	1
DNMT3A	KRAS	0.958	1
IRS4	PIK3R1	0.958	1
KRAS	NUDT11	0.958	1
KRAS	Amp_13q34	0.958	1
KRAS	Del_7p22.3	0.958	1
PIK3R1	13q-Del	0.958	1
SMARCA4	11q-Amp	0.958	1
ZNF292	Del_14q24.3	0.958	1
10p-Amp	9p-Del	0.958	1
4p-Del	Del_5q34	0.958	1
ARID2	Amp_10p15.3	0.959	1
DNMT3A	Amp_10p15.3	0.959	1
FUBP1	PLXNA3	0.959	1
NOTCH1	PRX	0.959	1
NOTCH1	STK19	0.959	1
NUDT11	11p-Del	0.959	1
SLC12A7	Amp_19p13.3	0.959	1
SLC6A3	13q-Del	0.959	1
ZMIZ1	13q-Del	0.959	1
11p-Del	Amp_13q34	0.959	1
18p-Del	Del_14q24.3	0.959	1
4q-Del	Del_9p21.3	0.959	1
Amp_10p15.3	Amp_13q34	0.959	1
Del_2q37.3	Del_6q26	0.959	1
ABCA7	Amp_1q32.1	0.96	1
ANKRD36	C14orf4	0.96	1
ANKRD36	MED9	0.96	1
ANKRD36	SMOC1	0.96	1
ANKRD36	TMEM216	0.96	1
ANKRD36	ZNF709	0.96	1
ARID1A	PLXNA3	0.96	1
ARID1A	SLC6A3	0.96	1
BRAF	EGFR	0.96	1
C14orf4	CREBZF	0.96	1
C14orf4	PTPN11	0.96	1
C14orf4	R3HDM1	0.96	1
C14orf4	RBPJ	0.96	1
C14orf4	RET	0.96	1
C14orf4	SLC12A7	0.96	1
C14orf4	Amp_2p24.3	0.96	1
CREBZF	MED9	0.96	1
CREBZF	SMOC1	0.96	1
CREBZF	TMEM216	0.96	1
CREBZF	ZNF709	0.96	1
CUL4B	Amp_1q32.1	0.96	1
EGFR	ENGASE	0.96	1
EGFR	ZNF512B	0.96	1
EGFR	Xq-Del	0.96	1
EMG1	19q-Del	0.96	1
FAM47C	PLXNA3	0.96	1
FAM47C	ZMIZ1	0.96	1
MED9	PTPN11	0.96	1
MED9	R3HDM1	0.96	1
MED9	RBPJ	0.96	1
MED9	RET	0.96	1
MED9	SLC12A7	0.96	1
MED9	Amp_2p24.3	0.96	1
MYT1	4q-Del	0.96	1
PRX	Amp_1q32.1	0.96	1
PTPN11	SMOC1	0.96	1
PTPN11	TMEM216	0.96	1
PTPN11	ZNF709	0.96	1
R3HDM1	SMOC1	0.96	1
R3HDM1	TMEM216	0.96	1
R3HDM1	ZNF709	0.96	1
RBPJ	SMOC1	0.96	1
RBPJ	ZNF709	0.96	1
RBPJ	7p-Amp	0.96	1
RET	SMOC1	0.96	1
RET	TMEM216	0.96	1
RET	ZNF709	0.96	1
SETD2	Amp_1q32.1	0.96	1
SLC12A7	SMOC1	0.96	1
SLC12A7	TMEM216	0.96	1
SLC12A7	ZNF709	0.96	1
SLC12A7	7p-Amp	0.96	1
SLC6A3	Amp_4q12	0.96	1
SMOC1	Amp_2p24.3	0.96	1
TMEM216	Amp_2p24.3	0.96	1
TNRC18	Amp_1q32.1	0.96	1
ZMIZ1	Del_1p36.32	0.96	1
ZNF709	Amp_2p24.3	0.96	1
13q-Del	9q-Del	0.96	1
4q-Del	Del_5p15.33	0.96	1
Amp_1q32.1	Del_5p15.33	0.96	1
ABCA7	KRAS	0.961	1
ARID2	9p-Del	0.961	1
BRAF	CIB1	0.961	1
BRAF	KRT3	0.961	1
BRAF	NAP1L2	0.961	1
BRAF	NRAS	0.961	1
BRAF	SRPX	0.961	1
C14orf4	7p-Amp	0.961	1
CIB1	EMG1	0.961	1
CIB1	ENGASE	0.961	1
CIB1	ROBO3	0.961	1
CIB1	ZNF512B	0.961	1
CIB1	Xq-Del	0.961	1
CIC	R3HDM1	0.961	1
CIC	RBPJ	0.961	1
CIC	SLC12A7	0.961	1
CUL4B	KRAS	0.961	1
DLX6	EMG1	0.961	1
DLX6	HTRA2	0.961	1
DLX6	PIK3CA	0.961	1
DLX6	ROBO3	0.961	1
DLX6	Xq-Del	0.961	1
ELF4	EMG1	0.961	1
ELF4	HTRA2	0.961	1
ELF4	PIK3CA	0.961	1
ELF4	ROBO3	0.961	1
ELF4	Xq-Del	0.961	1
EMG1	KRT3	0.961	1
EMG1	NAP1L2	0.961	1
EMG1	NRAS	0.961	1
EMG1	SMARCB1	0.961	1
EMG1	SRPX	0.961	1
ENGASE	KRT3	0.961	1
ENGASE	NAP1L2	0.961	1
ENGASE	NRAS	0.961	1
ENGASE	SRPX	0.961	1
GAGE2A	ZBTB20	0.961	1
HTRA2	KRT3	0.961	1
HTRA2	NAP1L2	0.961	1
HTRA2	NRAS	0.961	1
HTRA2	SMARCB1	0.961	1
HTRA2	SRPX	0.961	1
KRAS	PDGFRA	0.961	1
KRAS	PRX	0.961	1
KRAS	SETD2	0.961	1
KRAS	STK19	0.961	1
KRAS	TNRC18	0.961	1
KRAS	Amp_1q22	0.961	1
KRT3	ROBO3	0.961	1
KRT3	ZNF512B	0.961	1
KRT3	Xq-Del	0.961	1
NAP1L2	ROBO3	0.961	1
NAP1L2	ZNF512B	0.961	1
NAP1L2	Xq-Del	0.961	1
NF1	ZBTB20	0.961	1
NRAS	ROBO3	0.961	1
NRAS	ZNF512B	0.961	1
NRAS	Xq-Del	0.961	1
NUDT11	9p-Del	0.961	1
NUDT11	Del_11p15.5	0.961	1
PIK3CA	SMARCB1	0.961	1
PIK3CA	SRPX	0.961	1
ROBO3	SMARCB1	0.961	1
ROBO3	SRPX	0.961	1
SMARCB1	Xq-Del	0.961	1
SRPX	ZNF512B	0.961	1
SRPX	Xq-Del	0.961	1
TMEM216	7p-Amp	0.961	1
TP53	Del_9p23	0.961	1
ZBTB20	Xp-Del	0.961	1
ZMIZ1	Del_1p32.3	0.961	1
ZNF292	Amp_3q26.33	0.961	1
11q-Amp	19q-Del	0.961	1
12q-Del	Amp_3q26.33	0.961	1
4q-Del	Del_3q13.31	0.961	1
Del_2q37.3	Del_9p21.3	0.961	1
Del_10q26.3	Del_11p15.5	0.961	1
ANKRD36	PTEN	0.962	1
ANKRD36	Del_5p15.33	0.962	1
ARID1A	ZBTB20	0.962	1
ARID2	9q-Del	0.962	1
CREBZF	8q-Amp	0.962	1
CREBZF	Del_3p21.31	0.962	1
KRT3	Del_9p21.3	0.962	1
MYST4	TCF12	0.962	1
PLCG1	Amp_11q24.1	0.962	1
PPL	Amp_11q24.1	0.962	1
PTEN	R3HDM1	0.962	1
PTEN	SLC12A7	0.962	1
PTPN11	Amp_12q14.1	0.962	1
R3HDM1	8q-Amp	0.962	1
RB1	18p-Del	0.962	1
SLC12A7	Del_3p21.31	0.962	1
ZMIZ1	Del_19q13.42	0.962	1
8q-Amp	Amp_2p24.3	0.962	1
15q-Del	Amp_13q34	0.962	1
9q-Del	Amp_7q31.2	0.962	1
9q-Del	Del_7p22.3	0.962	1
Amp_2p24.3	Del_5p15.33	0.962	1
KRT3	Del_2q37.3	0.963	1
NIPBL	PIK3R1	0.963	1
11q-Amp	Del_2q37.3	0.963	1
9q-Del	Del_13q14.2	0.963	1
Amp_12q14.1	Del_4q34.3	0.963	1
ATRX	Del_3p21.31	0.964	1
EMG1	NF1	0.964	1
ENGASE	NF1	0.964	1
IDH1	Del_Xq21.1	0.964	1
MED9	Del_1p36.32	0.964	1
NF1	ZNF512B	0.964	1
NIPBL	PLXNA3	0.964	1
NIPBL	SLC6A3	0.964	1
PLXNA3	7q-Amp	0.964	1
PRX	14q-Del	0.964	1
ROBO3	6q-Del	0.964	1
SETD2	14q-Del	0.964	1
ZMIZ1	7q-Amp	0.964	1
ZNF512B	Amp_12p13.32	0.964	1
6q-Del	Amp_3q26.33	0.964	1
9p-Del	Del_4q34.3	0.964	1
Amp_3q26.33	Amp_12p13.32	0.964	1
Del_9p21.3	Del_11p15.5	0.964	1
C14orf4	C4BPA	0.965	1
C14orf4	DLC1	0.965	1
C14orf4	G6PC	0.965	1
C14orf4	MYT1	0.965	1
C14orf4	NEU2	0.965	1
C14orf4	PLCG1	0.965	1
C14orf4	PPL	0.965	1
C14orf4	RB1	0.965	1
C14orf4	TRERF1	0.965	1
C4BPA	MED9	0.965	1
C4BPA	SMOC1	0.965	1
C4BPA	TMEM216	0.965	1
C4BPA	ZNF709	0.965	1
C9orf79	11q-Amp	0.965	1
C9orf79	Del_8q24.3	0.965	1
DLC1	MED9	0.965	1
DLC1	SMOC1	0.965	1
DLC1	TMEM216	0.965	1
DLC1	ZNF709	0.965	1
DLX6	NOTCH1	0.965	1
ELF4	NOTCH1	0.965	1
ELF4	Del_19q13.42	0.965	1
FUBP1	ZBTB20	0.965	1
G6PC	MED9	0.965	1
G6PC	SMOC1	0.965	1
G6PC	TMEM216	0.965	1
G6PC	ZNF709	0.965	1
G6PC	10p-Amp	0.965	1
GAGE2A	IDH2	0.965	1
IRS4	Amp_17q25.1	0.965	1
KRAS	SLC6A3	0.965	1
MED9	MYT1	0.965	1
MED9	NEU2	0.965	1
MED9	PLCG1	0.965	1
MED9	PPL	0.965	1
MED9	RB1	0.965	1
MED9	TRERF1	0.965	1
MYT1	SMOC1	0.965	1
MYT1	TMEM216	0.965	1
MYT1	ZNF709	0.965	1
MYT1	Del_12q12	0.965	1
NAP1L2	NOTCH1	0.965	1
NEU2	SMOC1	0.965	1
NEU2	TMEM216	0.965	1
NEU2	ZNF709	0.965	1
NOTCH1	NRAS	0.965	1
NOTCH1	SRPX	0.965	1
NRAS	Del_19q13.42	0.965	1
PDGFRA	Del_8q24.3	0.965	1
PLCG1	SMOC1	0.965	1
PLCG1	TMEM216	0.965	1
PLCG1	ZNF709	0.965	1
PLCG1	Del_12q12	0.965	1
PPL	SMOC1	0.965	1
PPL	TMEM216	0.965	1
PPL	ZNF709	0.965	1
PRX	Del_8q24.3	0.965	1
R3HDM1	Del_6p25.3	0.965	1
RB1	SMOC1	0.965	1
RB1	TMEM216	0.965	1
RB1	ZNF709	0.965	1
RBPJ	Del_6p25.3	0.965	1
SMARCA4	Amp_10p15.3	0.965	1
SMOC1	TRERF1	0.965	1
TMEM216	TRERF1	0.965	1
TRERF1	ZNF709	0.965	1
11p-Del	22q-Del	0.965	1
18q-Del	9q-Del	0.965	1
22q-Del	9q-Del	0.965	1
22q-Del	Amp_10p15.3	0.965	1
Xp-Del	Del_3q29	0.965	1
Amp_1q22	Del_8q24.3	0.965	1
Amp_2p24.3	Del_6p25.3	0.965	1
ATRX	DLC1	0.966	1
ATRX	PPL	0.966	1
C9orf79	Del_18q23	0.966	1
MED9	10q-Del	0.966	1
PIK3CA	ZMIZ1	0.966	1
PLXNA3	Amp_7p11.2	0.966	1
SETD2	Del_18q23	0.966	1
Amp_3q26.33	Del_Xq21.1	0.966	1
Del_3p21.31	Del_8q24.3	0.966	1
ARID1A	Amp_17q25.1	0.967	1
ARID2	EGFR	0.967	1
ARID2	ZNF292	0.967	1
C4BPA	SMARCA4	0.967	1
DLC1	SMARCA4	0.967	1
DNMT3A	ZNF292	0.967	1
EGFR	MYST4	0.967	1
EMG1	1p-Del	0.967	1
G6PC	SMARCA4	0.967	1
HTRA2	Del_9p23	0.967	1
IRS4	Del_6q26	0.967	1
RB1	SMARCA4	0.967	1
RB1	18q-Del	0.967	1
RET	10q-Del	0.967	1
SMARCA4	TRERF1	0.967	1
SMOC1	Amp_8q24.13	0.967	1
TMEM216	Amp_8q24.13	0.967	1
TMEM216	Del_4q34.3	0.967	1
4q-Del	Del_9p23	0.967	1
9p-Del	Del_13q14.2	0.967	1
Xq-Del	Del_9p23	0.967	1
Amp_7q31.2	Amp_13q34	0.967	1
Amp_17q25.1	Del_5q34	0.967	1
Del_2q37.3	Del_9p23	0.967	1
Del_3q13.31	Del_7p22.3	0.967	1
Del_3q29	Del_5q34	0.967	1
Del_8q24.3	Del_9p23	0.967	1
ABCA7	Del_13q14.2	0.968	1
ARID1A	Xp-Del	0.968	1
CREBZF	PIK3R1	0.968	1
EGFR	Del_6q22.31	0.968	1
FAM47C	IRS4	0.968	1
GAGE2A	Del_5q34	0.968	1
IRS4	Del_5q34	0.968	1
PIK3CA	TCF12	0.968	1
PIK3CA	4p-Del	0.968	1
PIK3R1	R3HDM1	0.968	1
PIK3R1	RET	0.968	1
PIK3R1	SLC12A7	0.968	1
PLXNA3	Amp_1q32.1	0.968	1
RET	4p-Del	0.968	1
SLC12A7	4p-Del	0.968	1
10p-Amp	Del_3q13.31	0.968	1
Amp_3q26.33	Del_9p23	0.968	1
Del_3q13.31	Del_12q12	0.968	1
ABCA7	15q-Del	0.969	1
ANKRD36	Amp_8q24.13	0.969	1
C9orf79	9q-Del	0.969	1
CIB1	CIC	0.969	1
CIB1	DLX6	0.969	1
CIB1	ELF4	0.969	1
CIB1	KRT3	0.969	1
CIB1	NAP1L2	0.969	1
CIB1	NRAS	0.969	1
CIB1	SMARCB1	0.969	1
CIB1	SRPX	0.969	1
CIB1	Del_22q13.31	0.969	1
CIC	DLX6	0.969	1
CIC	NAP1L2	0.969	1
CIC	SMARCB1	0.969	1
CIC	SRPX	0.969	1
CREBZF	Del_4q34.3	0.969	1
CUL4B	TCF12	0.969	1
CUL4B	11p-Del	0.969	1
CUL4B	15q-Del	0.969	1
DLX6	KRT3	0.969	1
DLX6	NAP1L2	0.969	1
DLX6	NRAS	0.969	1
DLX6	SRPX	0.969	1
ELF4	KRT3	0.969	1
ELF4	NAP1L2	0.969	1
ELF4	NRAS	0.969	1
ELF4	SRPX	0.969	1
GAGE2A	KRAS	0.969	1
IRS4	KRAS	0.969	1
IRS4	Del_11p15.1	0.969	1
KRAS	Xp-Del	0.969	1
KRT3	NAP1L2	0.969	1
KRT3	NRAS	0.969	1
KRT3	SMARCB1	0.969	1
KRT3	SRPX	0.969	1
KRT3	Del_18q23	0.969	1
NAP1L2	NRAS	0.969	1
NAP1L2	SMARCB1	0.969	1
NAP1L2	SRPX	0.969	1
NAP1L2	Del_18q23	0.969	1
NRAS	SMARCB1	0.969	1
NRAS	SRPX	0.969	1
NRAS	Del_22q13.31	0.969	1
PDGFRA	11p-Del	0.969	1
PDGFRA	9q-Del	0.969	1
PRX	15q-Del	0.969	1
PRX	Amp_10p15.3	0.969	1
PTPN11	Amp_7q32.3	0.969	1
R3HDM1	Amp_8q24.13	0.969	1
SLC12A7	Amp_7q32.3	0.969	1
SMARCB1	SRPX	0.969	1
TCF12	TNRC18	0.969	1
10p-Amp	Del_5p15.33	0.969	1
7p-Amp	Del_8q24.3	0.969	1
7p-Amp	Del_22q13.31	0.969	1
11p-Del	Amp_1q22	0.969	1
18p-Del	Del_6p25.3	0.969	1
9q-Del	Amp_1q22	0.969	1
Xp-Del	Del_11p15.1	0.969	1
Amp_10p15.3	Del_2q37.3	0.969	1
Amp_11q24.1	Del_6p25.3	0.969	1
Amp_12q14.1	Del_12q12	0.969	1
Amp_17q25.1	Del_9p23	0.969	1
Del_3q13.31	Del_10q26.3	0.969	1
C4BPA	Amp_19p13.3	0.97	1
EGFR	Del_13q14.2	0.97	1
MED9	10p-Del	0.97	1
NEU2	Amp_19p13.3	0.97	1
PIK3CA	4q-Del	0.97	1
RBPJ	ZBTB20	0.97	1
SLC12A7	ZBTB20	0.97	1
TP53	Xp-Del	0.97	1
ABCA7	Amp_7q32.3	0.971	1
BRAF	C14orf4	0.971	1
BRAF	MED9	0.971	1
BRAF	SMOC1	0.971	1
BRAF	TMEM216	0.971	1
BRAF	ZNF709	0.971	1
C14orf4	EMG1	0.971	1
C14orf4	ENGASE	0.971	1
C14orf4	HTRA2	0.971	1
C14orf4	ROBO3	0.971	1
C14orf4	ZNF512B	0.971	1
C14orf4	Xq-Del	0.971	1
C9orf79	Amp_7q32.3	0.971	1
CIB1	11p-Del	0.971	1
CIC	FAM47C	0.971	1
CIC	18q-Del	0.971	1
EMG1	MED9	0.971	1
EMG1	SMOC1	0.971	1
EMG1	TMEM216	0.971	1
EMG1	ZNF709	0.971	1
ENGASE	MED9	0.971	1
ENGASE	SMOC1	0.971	1
ENGASE	TMEM216	0.971	1
ENGASE	ZNF709	0.971	1
FUBP1	IRS4	0.971	1
HTRA2	MED9	0.971	1
HTRA2	SMOC1	0.971	1
HTRA2	ZNF709	0.971	1
IRS4	NIPBL	0.971	1
IRS4	Del_6q22.31	0.971	1
KRT3	11p-Del	0.971	1
KRT3	Amp_10p15.3	0.971	1
MED9	ROBO3	0.971	1
MED9	ZNF512B	0.971	1
MED9	Xq-Del	0.971	1
NEU2	9p-Del	0.971	1
NRAS	Amp_10p15.3	0.971	1
NUDT11	Amp_Xp11.22	0.971	1
PLCG1	9p-Del	0.971	1
PLXNA3	11q-Amp	0.971	1
PLXNA3	Del_8q24.3	0.971	1
ROBO3	SMOC1	0.971	1
ROBO3	TMEM216	0.971	1
ROBO3	ZNF709	0.971	1
SLC6A3	Del_8q24.3	0.971	1
SMARCB1	Amp_10p15.3	0.971	1
SMOC1	ZNF512B	0.971	1
SMOC1	Xq-Del	0.971	1
SRPX	11p-Del	0.971	1
TMEM216	ZNF512B	0.971	1
TMEM216	Xq-Del	0.971	1
ZMIZ1	Del_8q24.3	0.971	1
ZNF512B	ZNF709	0.971	1
ZNF709	Xq-Del	0.971	1
10p-Amp	13q-Del	0.971	1
8q-Amp	Del_13q14.2	0.971	1
14q-Del	Del_8q24.3	0.971	1
22q-Del	Del_3q13.31	0.971	1
Amp_12q14.1	Del_13q14.2	0.971	1
Amp_13q34	Del_Xq21.1	0.971	1
ARID2	NF1	0.972	1
C4BPA	PTEN	0.972	1
C4BPA	8q-Amp	0.972	1
DLC1	Amp_12q14.1	0.972	1
G6PC	PTEN	0.972	1
G6PC	Amp_12q14.1	0.972	1
HTRA2	4q-Del	0.972	1
MYT1	PTEN	0.972	1
MYT1	8q-Amp	0.972	1
MYT1	Del_3p21.31	0.972	1
MYT1	Del_5p15.33	0.972	1
NEU2	PTEN	0.972	1
PLCG1	PTEN	0.972	1
PLCG1	Amp_12q14.1	0.972	1
PPL	PTEN	0.972	1
PTEN	TRERF1	0.972	1
PTEN	15q-Del	0.972	1
PTEN	Del_18q23	0.972	1
RBPJ	Del_19q13.42	0.972	1
RET	10p-Del	0.972	1
ZMIZ1	1p-Del	0.972	1
11q-Amp	1p-Del	0.972	1
11p-Del	Del_9p21.3	0.972	1
22q-Del	Del_5p15.33	0.972	1
6q-Del	Del_7p22.3	0.972	1
9p-Del	Del_11p15.1	0.972	1
9q-Del	Del_3p21.31	0.972	1
Xp-Del	Del_9p23	0.972	1
Amp_10p15.3	Del_9p21.3	0.972	1
Amp_12p13.32	Amp_13q34	0.972	1
Del_5p15.33	Del_22q13.31	0.972	1
ABCA7	ZNF292	0.973	1
ANKRD36	KRAS	0.973	1
ANKRD36	Amp_17q25.1	0.973	1
C9orf79	ZNF292	0.973	1
CREBZF	KRAS	0.973	1
ENGASE	TP53	0.973	1
KRAS	PTPN11	0.973	1
KRAS	R3HDM1	0.973	1
KRAS	RBPJ	0.973	1
KRAS	RET	0.973	1
KRAS	SLC12A7	0.973	1
KRAS	Amp_2p24.3	0.973	1
PDGFRA	ZNF292	0.973	1
PDGFRA	12q-Del	0.973	1
PDGFRA	Del_3q13.31	0.973	1
PRX	ZNF292	0.973	1
PTPN11	Del_3q29	0.973	1
ROBO3	TP53	0.973	1
SETD2	ZNF292	0.973	1
STK19	ZNF292	0.973	1
TP53	ZNF512B	0.973	1
11q-Amp	Del_18q23	0.973	1
12q-Del	Del_13q14.2	0.973	1
9p-Del	Amp_1q22	0.973	1
9q-Del	Del_1p32.3	0.973	1
Amp_1q22	Del_11p15.5	0.973	1
Amp_2p24.3	Amp_17q25.1	0.973	1
Amp_2p24.3	Del_3q29	0.973	1
Amp_7q32.3	Del_3q29	0.973	1
DLC1	Del_9p21.3	0.974	1
G6PC	Del_6p25.3	0.974	1
IDH1	4q-Del	0.974	1
NEU2	Del_6p25.3	0.974	1
PLCG1	Del_6p25.3	0.974	1
PLCG1	Del_9p21.3	0.974	1
PPL	Del_6p25.3	0.974	1
PTPN11	Del_10q26.3	0.974	1
ROBO3	Amp_11q24.1	0.974	1
SLC6A3	TCF12	0.974	1
ZMIZ1	15q-Del	0.974	1
10p-Amp	Del_Xq21.1	0.974	1
11p-Del	Amp_12q14.1	0.974	1
18p-Del	4p-Del	0.974	1
18p-Del	Xq-Del	0.974	1
Xp-Del	Amp_1q32.1	0.974	1
Xq-Del	Amp_11q24.1	0.974	1
Amp_8q24.13	Del_11p15.1	0.974	1
Amp_11q24.1	Del_9p23	0.974	1
Del_12q12	Del_Xq21.1	0.974	1
ABCA7	EGFR	0.975	1
CIC	PIK3R1	0.975	1
DLX6	EGFR	0.975	1
EGFR	ELF4	0.975	1
EGFR	PRX	0.975	1
EGFR	SMARCB1	0.975	1
EGFR	STK19	0.975	1
MED9	Del_6q26	0.975	1
MYT1	7p-Amp	0.975	1
PIK3CA	ZNF292	0.975	1
PLXNA3	Del_18q23	0.975	1
RB1	7p-Amp	0.975	1
19p-Amp	Amp_13q34	0.975	1
7p-Amp	22q-Del	0.975	1
15q-Del	Del_6p25.3	0.975	1
9q-Del	Del_6p25.3	0.975	1
Xq-Del	Del_14q24.3	0.975	1
Amp_3q26.33	Amp_13q34	0.975	1
Del_4q34.3	Del_9p23	0.975	1
ARID1A	RBPJ	0.976	1
ARID1A	RET	0.976	1
ARID1A	SLC12A7	0.976	1
C4BPA	PIK3R1	0.976	1
CREBZF	Amp_4q12	0.976	1
CUL4B	Amp_Xp11.22	0.976	1
DLC1	PIK3R1	0.976	1
EMG1	Del_12q12	0.976	1
FAM47C	R3HDM1	0.976	1
FAM47C	RET	0.976	1
FAM47C	SLC12A7	0.976	1
G6PC	PIK3R1	0.976	1
HTRA2	Del_12q12	0.976	1
MYT1	PIK3R1	0.976	1
NEU2	PIK3R1	0.976	1
PDGFRA	Del_Xq21.1	0.976	1
PIK3R1	PPL	0.976	1
PIK3R1	RB1	0.976	1
PIK3R1	TRERF1	0.976	1
PTEN	Amp_19p13.3	0.976	1
PTPN11	Amp_4q12	0.976	1
RBPJ	Amp_4q12	0.976	1
RBPJ	Del_5q34	0.976	1
ROBO3	10p-Amp	0.976	1
SETD2	Amp_Xp11.22	0.976	1
SETD2	Del_Xq21.1	0.976	1
SMARCA4	Del_6p25.3	0.976	1
TNRC18	Amp_Xp11.22	0.976	1
ZNF709	Del_11p15.1	0.976	1
13q-Del	9p-Del	0.976	1
18q-Del	Del_6p25.3	0.976	1
Amp_19p13.3	Del_3p21.31	0.976	1
Del_6p25.3	Del_18q23	0.976	1
BRAF	SMARCA4	0.977	1
C14orf4	CIB1	0.977	1
C14orf4	DLX6	0.977	1
C14orf4	ELF4	0.977	1
C14orf4	KRT3	0.977	1
C14orf4	NAP1L2	0.977	1
C14orf4	NRAS	0.977	1
C14orf4	SMARCB1	0.977	1
C14orf4	SRPX	0.977	1
C4BPA	KRAS	0.977	1
CIB1	MED9	0.977	1
CIB1	SMOC1	0.977	1
CIB1	ZNF709	0.977	1
CIC	SLC6A3	0.977	1
DLC1	KRAS	0.977	1
DLX6	MED9	0.977	1
DLX6	SMOC1	0.977	1
DLX6	TMEM216	0.977	1
DLX6	ZNF709	0.977	1
DNMT3A	Del_4q34.3	0.977	1
ELF4	MED9	0.977	1
ELF4	SMOC1	0.977	1
ELF4	TMEM216	0.977	1
ELF4	ZNF709	0.977	1
FUBP1	NF1	0.977	1
G6PC	KRAS	0.977	1
GAGE2A	Del_8q24.3	0.977	1
HTRA2	22q-Del	0.977	1
IRS4	Del_8q24.3	0.977	1
KRAS	MYT1	0.977	1
KRAS	NEU2	0.977	1
KRAS	PLCG1	0.977	1
KRAS	PPL	0.977	1
KRAS	RB1	0.977	1
KRAS	TRERF1	0.977	1
KRT3	MED9	0.977	1
KRT3	SMOC1	0.977	1
KRT3	TMEM216	0.977	1
KRT3	ZNF709	0.977	1
MED9	NAP1L2	0.977	1
MED9	NRAS	0.977	1
MED9	SMARCB1	0.977	1
MED9	SRPX	0.977	1
MED9	13q-Del	0.977	1
MED9	Del_6q22.31	0.977	1
NAP1L2	SMOC1	0.977	1
NAP1L2	TMEM216	0.977	1
NAP1L2	ZNF709	0.977	1
NRAS	SMOC1	0.977	1
NRAS	TMEM216	0.977	1
NRAS	ZNF709	0.977	1
PIK3R1	19q-Del	0.977	1
PTPN11	Amp_7q31.2	0.977	1
ROBO3	SMARCA4	0.977	1
SLC12A7	Amp_7q31.2	0.977	1
SMARCB1	SMOC1	0.977	1
SMARCB1	TMEM216	0.977	1
SMARCB1	ZNF709	0.977	1
SMOC1	SRPX	0.977	1
SRPX	TMEM216	0.977	1
SRPX	ZNF709	0.977	1
TMEM216	13q-Del	0.977	1
TMEM216	Del_6q22.31	0.977	1
10p-Amp	Amp_12p13.32	0.977	1
10p-Amp	Del_9p21.3	0.977	1
12q-Del	Del_5p15.33	0.977	1
14q-Del	15q-Del	0.977	1
14q-Del	9q-Del	0.977	1
22q-Del	Xq-Del	0.977	1
9p-Del	Del_5q34	0.977	1
Xp-Del	Del_2q37.3	0.977	1
Amp_2p24.3	Amp_7q31.2	0.977	1
Amp_3q26.33	Amp_11q24.1	0.977	1
Amp_8q24.13	Amp_13q34	0.977	1
Amp_8q24.13	Del_7p22.3	0.977	1
Amp_12p13.32	Del_12q12	0.977	1
Del_2q37.3	Del_3q13.31	0.977	1
Del_6p25.3	Del_13q14.2	0.977	1
ABCA7	7p-Amp	0.978	1
ANKRD36	Del_6q26	0.978	1
ARID2	ATRX	0.978	1
ATRX	Amp_13q34	0.978	1
C4BPA	ZBTB20	0.978	1
CIC	TCF12	0.978	1
CUL4B	7p-Amp	0.978	1
DLC1	ZBTB20	0.978	1
DLX6	NF1	0.978	1
DLX6	Amp_12p13.32	0.978	1
EGFR	PIK3CA	0.978	1
ELF4	NF1	0.978	1
G6PC	ZBTB20	0.978	1
GAGE2A	7q-Amp	0.978	1
IDH1	TCF12	0.978	1
KRT3	NF1	0.978	1
KRT3	Del_10q26.3	0.978	1
MYT1	ZBTB20	0.978	1
NEU2	ZBTB20	0.978	1
NF1	SRPX	0.978	1
NIPBL	R3HDM1	0.978	1
NIPBL	RET	0.978	1
NIPBL	SLC12A7	0.978	1
NRAS	Amp_12p13.32	0.978	1
PIK3R1	9q-Del	0.978	1
PLXNA3	ZNF292	0.978	1
R3HDM1	Del_6q26	0.978	1
RB1	ZBTB20	0.978	1
SLC6A3	Del_3q13.31	0.978	1
SMARCB1	Amp_12p13.32	0.978	1
SRPX	Del_10q26.3	0.978	1
TRERF1	ZBTB20	0.978	1
ZBTB20	18p-Del	0.978	1
ZMIZ1	ZNF292	0.978	1
15q-Del	4p-Del	0.978	1
ANKRD36	Del_11p15.1	0.979	1
ARID2	MYST4	0.979	1
ARID2	NUDT11	0.979	1
ARID2	Amp_13q34	0.979	1
ATRX	10p-Amp	0.979	1
ATRX	Del_12q12	0.979	1
CUL4B	NF1	0.979	1
DNMT3A	MYST4	0.979	1
DNMT3A	NUDT11	0.979	1
EMG1	Amp_19p13.3	0.979	1
IDH2	11q-Amp	0.979	1
IRS4	NOTCH1	0.979	1
NF1	PRX	0.979	1
NF1	TNRC18	0.979	1
NUDT11	Del_9p23	0.979	1
STK19	6q-Del	0.979	1
11q-Amp	Del_3q29	0.979	1
12q-Del	Del_6p25.3	0.979	1
15q-Del	Del_18q23	0.979	1
4q-Del	9p-Del	0.979	1
4q-Del	Del_11p15.5	0.979	1
9q-Del	Del_18q23	0.979	1
Amp_1q22	Amp_12p13.32	0.979	1
Amp_3q26.33	Del_12q12	0.979	1
Amp_3q26.33	Del_14q24.3	0.979	1
Del_3p21.31	Del_10q26.3	0.979	1
Del_3q13.31	Del_9p21.3	0.979	1
Del_5p15.33	Del_10q26.3	0.979	1
Del_10q26.3	Del_Xq21.1	0.979	1
ABCA7	19p-Amp	0.98	1
CIB1	Amp_7q31.2	0.98	1
CIC	G6PC	0.98	1
CUL4B	19p-Amp	0.98	1
DLC1	10q-Del	0.98	1
DLC1	Del_3q29	0.98	1
G6PC	Amp_17q25.1	0.98	1
GAGE2A	9q-Del	0.98	1
MYT1	Amp_17q25.1	0.98	1
NEU2	Del_3q29	0.98	1
NUDT11	Del_9p21.3	0.98	1
PIK3CA	ZNF709	0.98	1
PIK3R1	18q-Del	0.98	1
PLCG1	Del_3q29	0.98	1
PRX	19p-Amp	0.98	1
PTPN11	Amp_1q32.1	0.98	1
SETD2	Amp_3q26.33	0.98	1
SMARCA4	4p-Del	0.98	1
STK19	Amp_3q26.33	0.98	1
TCF12	Xp-Del	0.98	1
19p-Amp	Amp_1q22	0.98	1
18q-Del	4p-Del	0.98	1
22q-Del	Amp_12p13.32	0.98	1
Xp-Del	Del_14q24.3	0.98	1
Amp_1q22	Amp_3q26.33	0.98	1
Amp_17q25.1	Del_9p21.3	0.98	1
Del_2q37.3	Del_3q29	0.98	1
Del_3p21.31	Del_6q26	0.98	1
Del_3q29	Del_9p21.3	0.98	1
Del_3q29	Del_10q26.3	0.98	1
Del_10q26.3	Del_11p15.1	0.98	1
BRAF	KRAS	0.981	1
EMG1	KRAS	0.981	1
EMG1	Del_3p21.31	0.981	1
ENGASE	KRAS	0.981	1
ENGASE	PTEN	0.981	1
ENGASE	8q-Amp	0.981	1
FUBP1	RET	0.981	1
FUBP1	SLC12A7	0.981	1
HTRA2	KRAS	0.981	1
HTRA2	8q-Amp	0.981	1
HTRA2	Del_3p21.31	0.981	1
KRAS	ROBO3	0.981	1
KRAS	ZNF512B	0.981	1
KRAS	Xq-Del	0.981	1
NF1	Amp_1q32.1	0.981	1
NOTCH1	PIK3CA	0.981	1
NOTCH1	ZNF709	0.981	1
PTEN	ZNF512B	0.981	1
PTEN	Xq-Del	0.981	1
R3HDM1	Del_6q22.31	0.981	1
SLC12A7	Del_6q22.31	0.981	1
10p-Amp	Del_2q37.3	0.981	1
19p-Amp	22q-Del	0.981	1
8q-Amp	Amp_Xp11.22	0.981	1
11p-Del	Del_13q14.2	0.981	1
14q-Del	Xp-Del	0.981	1
Xq-Del	Amp_12q14.1	0.981	1
Xq-Del	Del_3p21.31	0.981	1
Amp_10p15.3	Del_13q14.2	0.981	1
Amp_11q24.1	Amp_17q25.1	0.981	1
Amp_12q14.1	Del_Xq21.1	0.981	1
Del_3p21.31	Del_Xq21.1	0.981	1
ARID1A	C4BPA	0.982	1
ARID1A	DLC1	0.982	1
ARID1A	G6PC	0.982	1
ARID1A	MYT1	0.982	1
ARID1A	NEU2	0.982	1
ARID1A	PPL	0.982	1
ARID1A	RB1	0.982	1
ARID1A	TRERF1	0.982	1
BRAF	Del_6p25.3	0.982	1
C4BPA	FAM47C	0.982	1
DLC1	FAM47C	0.982	1
DLC1	10p-Del	0.982	1
DNMT3A	Amp_11q24.1	0.982	1
EGFR	PLXNA3	0.982	1
FAM47C	G6PC	0.982	1
FAM47C	MYT1	0.982	1
FAM47C	NEU2	0.982	1
FAM47C	PPL	0.982	1
FAM47C	RB1	0.982	1
FAM47C	TRERF1	0.982	1
FAM47C	Del_8q24.3	0.982	1
G6PC	Del_5q34	0.982	1
GAGE2A	12q-Del	0.982	1
GAGE2A	Del_3q13.31	0.982	1
HTRA2	Del_6p25.3	0.982	1
IRS4	ZNF292	0.982	1
IRS4	12q-Del	0.982	1
MYT1	Del_5q34	0.982	1
NF1	Amp_7p11.2	0.982	1
PIK3R1	ZNF292	0.982	1
PTEN	Del_6p25.3	0.982	1
PTPN11	Del_8q24.3	0.982	1
R3HDM1	Del_8q24.3	0.982	1
ZNF512B	Del_13q14.2	0.982	1
10q-Del	9q-Del	0.982	1
13q-Del	Amp_3q26.33	0.982	1
4p-Del	Del_3q13.31	0.982	1
Xp-Del	Del_3q13.31	0.982	1
Xq-Del	Del_6p25.3	0.982	1
Amp_3q26.33	Del_6q22.31	0.982	1
Amp_7q31.2	Amp_11q24.1	0.982	1
Del_4q34.3	Del_18q23	0.982	1
Del_5q34	Del_8q24.3	0.982	1
Del_6p25.3	Del_11p15.5	0.982	1
ABCA7	ARID2	0.983	1
ABCA7	DNMT3A	0.983	1
ABCA7	MYST4	0.983	1
ABCA7	NUDT11	0.983	1
ARID1A	19q-Del	0.983	1
ARID2	C9orf79	0.983	1
ARID2	CUL4B	0.983	1
ARID2	PRX	0.983	1
ARID2	SETD2	0.983	1
ARID2	STK19	0.983	1
C14orf4	MED9	0.983	1
C14orf4	SMOC1	0.983	1
C14orf4	TMEM216	0.983	1
C14orf4	ZNF709	0.983	1
C14orf4	14q-Del	0.983	1
C9orf79	DNMT3A	0.983	1
C9orf79	NUDT11	0.983	1
CUL4B	DNMT3A	0.983	1
CUL4B	MYST4	0.983	1
CUL4B	NUDT11	0.983	1
DNMT3A	PDGFRA	0.983	1
DNMT3A	SETD2	0.983	1
DNMT3A	STK19	0.983	1
DNMT3A	Amp_1q22	0.983	1
IDH1	Del_5p15.33	0.983	1
MED9	SMOC1	0.983	1
MED9	TMEM216	0.983	1
MED9	ZNF709	0.983	1
MED9	14q-Del	0.983	1
MYST4	PDGFRA	0.983	1
MYST4	PRX	0.983	1
MYST4	SETD2	0.983	1
MYST4	STK19	0.983	1
MYST4	TNRC18	0.983	1
NRAS	4q-Del	0.983	1
NUDT11	PDGFRA	0.983	1
NUDT11	STK19	0.983	1
NUDT11	TNRC18	0.983	1
PLXNA3	19p-Amp	0.983	1
PLXNA3	Amp_7q32.3	0.983	1
SMARCA4	ZBTB20	0.983	1
SMARCB1	4q-Del	0.983	1
SMOC1	TMEM216	0.983	1
SMOC1	ZNF709	0.983	1
SMOC1	14q-Del	0.983	1
STK19	Del_7p22.3	0.983	1
TMEM216	ZNF709	0.983	1
ZBTB20	18q-Del	0.983	1
ZMIZ1	Amp_7q32.3	0.983	1
10p-Amp	Amp_17q25.1	0.983	1
10p-Amp	Del_10q26.3	0.983	1
10p-Amp	Del_13q14.2	0.983	1
10p-Del	13q-Del	0.983	1
9q-Del	Del_3q29	0.983	1
Xp-Del	Del_18q23	0.983	1
Xp-Del	Del_22q13.31	0.983	1
Amp_3q26.33	Amp_19p13.3	0.983	1
Del_8q24.3	Del_10q26.3	0.983	1
Del_12q12	Del_13q14.2	0.983	1
ANKRD36	Del_9p23	0.984	1
ARID1A	Amp_11q24.1	0.984	1
BRAF	PIK3R1	0.984	1
C4BPA	NIPBL	0.984	1
CIB1	KRAS	0.984	1
DLC1	NIPBL	0.984	1
DLX6	KRAS	0.984	1
ELF4	KRAS	0.984	1
EMG1	PIK3R1	0.984	1
ENGASE	PIK3R1	0.984	1
ENGASE	Del_11p15.5	0.984	1
G6PC	NIPBL	0.984	1
GAGE2A	11p-Del	0.984	1
HTRA2	4p-Del	0.984	1
HTRA2	9p-Del	0.984	1
KRAS	KRT3	0.984	1
KRAS	NAP1L2	0.984	1
KRAS	NRAS	0.984	1
KRAS	SMARCB1	0.984	1
KRAS	SRPX	0.984	1
MED9	Del_22q13.31	0.984	1
MYST4	Amp_7p11.2	0.984	1
MYT1	NIPBL	0.984	1
NEU2	NIPBL	0.984	1
NF1	PLXNA3	0.984	1
NF1	ZMIZ1	0.984	1
NIPBL	PPL	0.984	1
NIPBL	RB1	0.984	1
NIPBL	TRERF1	0.984	1
PIK3R1	ZNF512B	0.984	1
PTEN	13q-Del	0.984	1
RBPJ	Del_9p23	0.984	1
SMARCA4	Amp_8q24.13	0.984	1
TP53	Del_13q14.2	0.984	1
ZBTB20	ZNF292	0.984	1
ZBTB20	Del_18q23	0.984	1
8q-Amp	13q-Del	0.984	1
10p-Del	Del_13q14.2	0.984	1
11p-Del	13q-Del	0.984	1
11p-Del	Xp-Del	0.984	1
12q-Del	Del_22q13.31	0.984	1
13q-Del	Amp_10p15.3	0.984	1
13q-Del	Amp_12q14.1	0.984	1
18p-Del	4q-Del	0.984	1
9p-Del	Xq-Del	0.984	1
Xp-Del	Amp_10p15.3	0.984	1
Amp_7p11.2	Amp_13q34	0.984	1
Amp_13q34	Del_12q12	0.984	1
Del_2q37.3	Del_5q34	0.984	1
Del_3p21.31	Del_14q24.3	0.984	1
Del_3q13.31	Del_9p23	0.984	1
Del_3q13.31	Del_22q13.31	0.984	1
Del_7p22.3	Del_12q12	0.984	1
ANKRD36	ATRX	0.985	1
ANKRD36	Del_2q37.3	0.985	1
ARID1A	15q-Del	0.985	1
BRAF	ZBTB20	0.985	1
C4BPA	Amp_7q32.3	0.985	1
CREBZF	9q-Del	0.985	1
ENGASE	ZBTB20	0.985	1
GAGE2A	Amp_Xp11.22	0.985	1
KRT3	10p-Amp	0.985	1
NEU2	Amp_7q32.3	0.985	1
NRAS	10p-Amp	0.985	1
NUDT11	22q-Del	0.985	1
PDGFRA	4q-Del	0.985	1
RBPJ	9q-Del	0.985	1
RET	Del_2q37.3	0.985	1
SLC12A7	15q-Del	0.985	1
SMARCA4	Del_7p22.3	0.985	1
SMARCB1	10p-Amp	0.985	1
TP53	Amp_3q26.33	0.985	1
ZBTB20	ZNF512B	0.985	1
ZNF292	Del_1p36.32	0.985	1
ZNF292	Del_1p32.3	0.985	1
ZNF709	11p-Del	0.985	1
19p-Amp	Del_3p21.31	0.985	1
11p-Del	Amp_8q24.13	0.985	1
11p-Del	Del_3q13.31	0.985	1
22q-Del	Amp_13q34	0.985	1
4p-Del	Del_3p21.31	0.985	1
4q-Del	Amp_10p15.3	0.985	1
6q-Del	Del_8q24.3	0.985	1
9q-Del	Del_5q34	0.985	1
Amp_2p24.3	Del_2q37.3	0.985	1
Amp_7q31.2	Del_9p23	0.985	1
Amp_8q24.13	Amp_17q25.1	0.985	1
Amp_12p13.32	Del_8q24.3	0.985	1
ABCA7	PDGFRA	0.986	1
ABCA7	STK19	0.986	1
ABCA7	TNRC18	0.986	1
ARID2	PLXNA3	0.986	1
ARID2	SLC6A3	0.986	1
ARID2	ZMIZ1	0.986	1
C4BPA	Amp_1q32.1	0.986	1
C9orf79	PDGFRA	0.986	1
C9orf79	PRX	0.986	1
C9orf79	SETD2	0.986	1
C9orf79	STK19	0.986	1
C9orf79	TNRC18	0.986	1
C9orf79	18p-Del	0.986	1
CIB1	22q-Del	0.986	1
CUL4B	PDGFRA	0.986	1
CUL4B	SETD2	0.986	1
CUL4B	STK19	0.986	1
CUL4B	TNRC18	0.986	1
DLC1	Amp_1q32.1	0.986	1
DLX6	SMARCA4	0.986	1
DNMT3A	PLXNA3	0.986	1
DNMT3A	SLC6A3	0.986	1
ELF4	SMARCA4	0.986	1
FAM47C	NOTCH1	0.986	1
G6PC	Amp_1q32.1	0.986	1
NOTCH1	SLC12A7	0.986	1
NRAS	22q-Del	0.986	1
NUDT11	PLXNA3	0.986	1
NUDT11	ZMIZ1	0.986	1
NUDT11	Del_11p15.1	0.986	1
PDGFRA	PRX	0.986	1
PDGFRA	SETD2	0.986	1
PDGFRA	STK19	0.986	1
PDGFRA	TNRC18	0.986	1
PLCG1	Amp_1q32.1	0.986	1
PRX	STK19	0.986	1
PRX	TNRC18	0.986	1
PTEN	6q-Del	0.986	1
RB1	Amp_1q32.1	0.986	1
SETD2	STK19	0.986	1
SETD2	TNRC18	0.986	1
SETD2	18p-Del	0.986	1
STK19	TNRC18	0.986	1
10p-Amp	4q-Del	0.986	1
10p-Amp	Amp_4q12	0.986	1
10p-Del	9q-Del	0.986	1
11p-Del	Del_10q26.3	0.986	1
Amp_4q12	Del_12q12	0.986	1
Del_6p25.3	Del_11p15.1	0.986	1
Del_7p22.3	Del_14q24.3	0.986	1
Del_8q24.3	Del_9p21.3	0.986	1
Del_9p23	Del_11p15.1	0.986	1
ANKRD36	Del_3q13.31	0.987	1
DNMT3A	FUBP1	0.987	1
EMG1	Del_3q29	0.987	1
HTRA2	IDH2	0.987	1
HTRA2	Del_3q29	0.987	1
IRS4	Amp_3q26.33	0.987	1
NAP1L2	Amp_19p13.3	0.987	1
NIPBL	15q-Del	0.987	1
NUDT11	13q-Del	0.987	1
PLCG1	Del_6q26	0.987	1
PPL	Del_8q24.3	0.987	1
PTPN11	7q-Amp	0.987	1
R3HDM1	ZNF292	0.987	1
R3HDM1	Del_3q13.31	0.987	1
RB1	Del_10q26.3	0.987	1
RET	ZNF292	0.987	1
SLC12A7	ZNF292	0.987	1
SLC12A7	7q-Amp	0.987	1
TP53	TRERF1	0.987	1
ZNF512B	Amp_17q25.1	0.987	1
ZNF512B	Del_3q29	0.987	1
9p-Del	Amp_7q31.2	0.987	1
Xq-Del	Del_3q29	0.987	1
Amp_1q32.1	Del_8q24.3	0.987	1
Amp_3q26.33	Del_6p25.3	0.987	1
Amp_7q31.2	Del_2q37.3	0.987	1
Amp_13q34	Amp_19p13.3	0.987	1
ARID1A	BRAF	0.988	1
BRAF	FAM47C	0.988	1
C14orf4	KRAS	0.988	1
C14orf4	NF1	0.988	1
CIB1	8q-Amp	0.988	1
CIB1	Del_1p36.32	0.988	1
CIC	IDH2	0.988	1
CREBZF	14q-Del	0.988	1
DLX6	PTEN	0.988	1
DNMT3A	8q-Amp	0.988	1
EGFR	Del_6q26	0.988	1
ELF4	PTEN	0.988	1
ENGASE	FAM47C	0.988	1
ENGASE	Del_5q34	0.988	1
FAM47C	ZNF292	0.988	1
FUBP1	G6PC	0.988	1
FUBP1	PPL	0.988	1
KRAS	MED9	0.988	1
KRAS	SMOC1	0.988	1
KRAS	TMEM216	0.988	1
KRAS	ZNF709	0.988	1
KRT3	8q-Amp	0.988	1
KRT3	Amp_12q14.1	0.988	1
MED9	NF1	0.988	1
MED9	6q-Del	0.988	1
MYST4	PTEN	0.988	1
MYST4	8q-Amp	0.988	1
NF1	ZNF709	0.988	1
NRAS	Del_1p36.32	0.988	1
NRAS	Del_3p21.31	0.988	1
PDGFRA	Del_12q12	0.988	1
PIK3R1	Amp_3q26.33	0.988	1
PLCG1	Del_6q22.31	0.988	1
PLXNA3	Amp_7q31.2	0.988	1
PTEN	SMARCB1	0.988	1
PTPN11	Amp_7p11.2	0.988	1
RET	Del_22q13.31	0.988	1
SRPX	Amp_7p11.2	0.988	1
ZMIZ1	Amp_7q31.2	0.988	1
8q-Amp	Del_7p22.3	0.988	1
12q-Del	Amp_4q12	0.988	1
13q-Del	Del_9p23	0.988	1
22q-Del	Amp_4q12	0.988	1
9p-Del	Del_2q37.3	0.988	1
Amp_8q24.13	Del_2q37.3	0.988	1
Amp_19p13.3	Del_9p23	0.988	1
Del_2q37.3	Del_4q34.3	0.988	1
Del_3p21.31	Del_7p22.3	0.988	1
Del_3q13.31	Del_5q34	0.988	1
Del_6p25.3	Del_14q24.3	0.988	1
Del_8q24.3	Del_11p15.1	0.988	1
ABCA7	PLXNA3	0.989	1
ABCA7	SLC6A3	0.989	1
ABCA7	ZMIZ1	0.989	1
ANKRD36	11p-Del	0.989	1
ANKRD36	Amp_10p15.3	0.989	1
ARID2	GAGE2A	0.989	1
ARID2	IRS4	0.989	1
BRAF	NIPBL	0.989	1
C9orf79	SLC6A3	0.989	1
C9orf79	ZMIZ1	0.989	1
C9orf79	18q-Del	0.989	1
CREBZF	Del_14q24.3	0.989	1
CUL4B	SLC6A3	0.989	1
CUL4B	ZMIZ1	0.989	1
DLC1	TCF12	0.989	1
DNMT3A	GAGE2A	0.989	1
ENGASE	NIPBL	0.989	1
ENGASE	Amp_8q24.13	0.989	1
G6PC	TCF12	0.989	1
GAGE2A	Del_7p22.3	0.989	1
GAGE2A	Del_11p15.5	0.989	1
IDH1	SMARCA4	0.989	1
IRS4	MYST4	0.989	1
IRS4	NF1	0.989	1
IRS4	NUDT11	0.989	1
IRS4	Amp_12p13.32	0.989	1
IRS4	Amp_13q34	0.989	1
KRT3	Del_6p25.3	0.989	1
MYT1	TCF12	0.989	1
NEU2	9q-Del	0.989	1
NEU2	Amp_7q31.2	0.989	1
NIPBL	ZNF512B	0.989	1
NRAS	Del_1p32.3	0.989	1
PDGFRA	PLXNA3	0.989	1
PDGFRA	ZMIZ1	0.989	1
PLXNA3	PRX	0.989	1
PLXNA3	STK19	0.989	1
PLXNA3	TNRC18	0.989	1
PRX	SLC6A3	0.989	1
RET	Del_14q24.3	0.989	1
SETD2	SLC6A3	0.989	1
SETD2	ZMIZ1	0.989	1
SETD2	18q-Del	0.989	1
SLC6A3	STK19	0.989	1
SLC6A3	TNRC18	0.989	1
SRPX	Del_14q24.3	0.989	1
STK19	ZMIZ1	0.989	1
TCF12	TRERF1	0.989	1
TNRC18	ZMIZ1	0.989	1
TP53	6q-Del	0.989	1
TRERF1	9q-Del	0.989	1
19p-Amp	9p-Del	0.989	1
7p-Amp	Del_9p23	0.989	1
8q-Amp	Amp_17q25.1	0.989	1
8q-Amp	Del_3q29	0.989	1
4q-Del	Del_19q13.42	0.989	1
9p-Del	Xp-Del	0.989	1
Xp-Del	Del_7p22.3	0.989	1
Amp_7q32.3	Amp_11q24.1	0.989	1
Amp_10p15.3	Amp_Xp11.22	0.989	1
Amp_10p15.3	Del_Xq21.1	0.989	1
Amp_12q14.1	Del_3q29	0.989	1
Amp_17q25.1	Del_Xq21.1	0.989	1
Del_2q37.3	Del_6q22.31	0.989	1
Del_3q29	Del_Xq21.1	0.989	1
ANKRD36	Amp_3q26.33	0.99	1
C4BPA	ZNF292	0.99	1
DLC1	ZNF292	0.99	1
DLX6	PIK3R1	0.99	1
ELF4	PIK3R1	0.99	1
G6PC	ZNF292	0.99	1
MYST4	Amp_7q32.3	0.99	1
MYST4	Del_19q13.42	0.99	1
MYT1	ZNF292	0.99	1
MYT1	12q-Del	0.99	1
NEU2	PIK3CA	0.99	1
NEU2	Del_3q13.31	0.99	1
NF1	Del_10q26.3	0.99	1
PIK3CA	TRERF1	0.99	1
PIK3R1	SMARCB1	0.99	1
PIK3R1	Del_1p36.32	0.99	1
PPL	ZNF292	0.99	1
PRX	Amp_19p13.3	0.99	1
RB1	ZNF292	0.99	1
SLC12A7	19p-Amp	0.99	1
TRERF1	ZNF292	0.99	1
ZMIZ1	18p-Del	0.99	1
10p-Amp	11p-Del	0.99	1
8q-Amp	Del_4q34.3	0.99	1
10p-Del	Amp_4q12	0.99	1
14q-Del	Amp_3q26.33	0.99	1
Xq-Del	Amp_1q32.1	0.99	1
Amp_4q12	Del_22q13.31	0.99	1
Amp_4q12	Del_Xq21.1	0.99	1
Amp_7q32.3	Amp_13q34	0.99	1
Amp_13q34	Del_6p25.3	0.99	1
Amp_Xp11.22	Del_5q34	0.99	1
Del_5q34	Del_Xq21.1	0.99	1
ABCA7	IRS4	0.991	1
ABCA7	PTEN	0.991	1
ARID2	PIK3R1	0.991	1
ATRX	TNRC18	0.991	1
C9orf79	GAGE2A	0.991	1
C9orf79	IRS4	0.991	1
CUL4B	IRS4	0.991	1
CUL4B	PTEN	0.991	1
CUL4B	Del_5p15.33	0.991	1
DLC1	NOTCH1	0.991	1
DLX6	ZBTB20	0.991	1
DNMT3A	PIK3R1	0.991	1
ELF4	ZBTB20	0.991	1
G6PC	NOTCH1	0.991	1
GAGE2A	Amp_7q32.3	0.991	1
HTRA2	Del_8q24.3	0.991	1
IRS4	PDGFRA	0.991	1
IRS4	SETD2	0.991	1
IRS4	STK19	0.991	1
IRS4	TNRC18	0.991	1
IRS4	Amp_1q22	0.991	1
NEU2	NOTCH1	0.991	1
NF1	ZNF292	0.991	1
NOTCH1	PPL	0.991	1
NRAS	1p-Del	0.991	1
NUDT11	PIK3R1	0.991	1
NUDT11	Del_13q14.2	0.991	1
PDGFRA	Amp_12q14.1	0.991	1
PDGFRA	Del_3p21.31	0.991	1
PIK3CA	Del_19q13.42	0.991	1
PIK3R1	Del_1p32.3	0.991	1
PLXNA3	SLC6A3	0.991	1
PRX	Xp-Del	0.991	1
PRX	Del_14q24.3	0.991	1
PTEN	STK19	0.991	1
PTEN	TNRC18	0.991	1
PTEN	Amp_4q12	0.991	1
SLC6A3	ZMIZ1	0.991	1
SMARCA4	TP53	0.991	1
SMARCB1	ZBTB20	0.991	1
TMEM216	4q-Del	0.991	1
ZNF292	1p-Del	0.991	1
19p-Amp	Del_22q13.31	0.991	1
8q-Amp	Amp_4q12	0.991	1
10q-Del	Del_6p25.3	0.991	1
10q-Del	Del_6q22.31	0.991	1
12q-Del	Amp_12p13.32	0.991	1
9p-Del	Del_8q24.3	0.991	1
Xq-Del	Del_8q24.3	0.991	1
Amp_1q22	Del_11p15.1	0.991	1
Amp_3q26.33	Del_3q29	0.991	1
Amp_4q12	Del_5p15.33	0.991	1
Amp_10p15.3	Del_5q34	0.991	1
Amp_12q14.1	Del_5q34	0.991	1
Amp_13q34	Del_2q37.3	0.991	1
Del_2q37.3	Del_7p22.3	0.991	1
Del_3q29	Del_9p23	0.991	1
Del_8q24.3	Del_11p15.5	0.991	1
ANKRD36	DNMT3A	0.992	1
ANKRD36	Del_7p22.3	0.992	1
ANKRD36	Del_9p21.3	0.992	1
ARID2	SLC12A7	0.992	1
ATRX	ENGASE	0.992	1
ATRX	ZNF512B	0.992	1
CIB1	IDH2	0.992	1
CIB1	Del_3q29	0.992	1
CIC	EMG1	0.992	1
CREBZF	MYST4	0.992	1
DNMT3A	NOTCH1	0.992	1
DNMT3A	RET	0.992	1
DNMT3A	SLC12A7	0.992	1
DNMT3A	ZBTB20	0.992	1
EGFR	RET	0.992	1
EGFR	SLC12A7	0.992	1
EGFR	Del_14q24.3	0.992	1
EMG1	15q-Del	0.992	1
ENGASE	TCF12	0.992	1
ENGASE	15q-Del	0.992	1
HTRA2	9q-Del	0.992	1
IDH2	NAP1L2	0.992	1
KRT3	Amp_17q25.1	0.992	1
MYST4	R3HDM1	0.992	1
MYST4	RET	0.992	1
MYST4	SLC12A7	0.992	1
MYST4	ZBTB20	0.992	1
MYST4	Del_1p32.3	0.992	1
NOTCH1	Del_7p22.3	0.992	1
NRAS	Del_3q29	0.992	1
NUDT11	R3HDM1	0.992	1
NUDT11	RET	0.992	1
NUDT11	SLC12A7	0.992	1
PDGFRA	Del_6p25.3	0.992	1
PLCG1	Del_9p23	0.992	1
PPL	Amp_Xp11.22	0.992	1
PPL	Del_Xq21.1	0.992	1
SLC6A3	SMARCA4	0.992	1
SMARCA4	10p-Amp	0.992	1
TMEM216	Del_12q12	0.992	1
ZMIZ1	18q-Del	0.992	1
10p-Amp	Del_11p15.1	0.992	1
9p-Del	Amp_19p13.3	0.992	1
9p-Del	Del_3q29	0.992	1
9q-Del	Xq-Del	0.992	1
Amp_2p24.3	Del_7p22.3	0.992	1
Amp_3q26.33	Amp_4q12	0.992	1
Del_2q37.3	Del_6p25.3	0.992	1
Del_3p21.31	Del_13q14.2	0.992	1
Del_5p15.33	Del_13q14.2	0.992	1
Del_5q34	Del_6p25.3	0.992	1
Del_14q24.3	Del_19q13.42	0.992	1
ABCA7	PTPN11	0.993	1
ABCA7	RET	0.993	1
ABCA7	SLC12A7	0.993	1
ANKRD36	Amp_1q22	0.993	1
ANKRD36	Amp_12p13.32	0.993	1
ARID1A	DLX6	0.993	1
ARID1A	ELF4	0.993	1
ARID1A	NAP1L2	0.993	1
ARID1A	SMARCB1	0.993	1
ARID1A	Del_13q14.2	0.993	1
ATRX	Del_5q34	0.993	1
BRAF	ZNF292	0.993	1
BRAF	Del_3q13.31	0.993	1
C9orf79	PIK3CA	0.993	1
C9orf79	PIK3R1	0.993	1
C9orf79	R3HDM1	0.993	1
C9orf79	RET	0.993	1
C9orf79	SLC12A7	0.993	1
CIB1	FAM47C	0.993	1
CREBZF	PRX	0.993	1
CUL4B	R3HDM1	0.993	1
CUL4B	RET	0.993	1
CUL4B	SLC12A7	0.993	1
CUL4B	Amp_2p24.3	0.993	1
DLC1	19p-Amp	0.993	1
DLX6	FAM47C	0.993	1
DLX6	NIPBL	0.993	1
ELF4	NIPBL	0.993	1
ENGASE	ZNF292	0.993	1
ENGASE	Del_11p15.1	0.993	1
FAM47C	SMARCB1	0.993	1
HTRA2	Del_3q13.31	0.993	1
IRS4	PLXNA3	0.993	1
KRT3	Del_5q34	0.993	1
MED9	22q-Del	0.993	1
NAP1L2	Del_5q34	0.993	1
NF1	PTPN11	0.993	1
NF1	R3HDM1	0.993	1
NIPBL	NRAS	0.993	1
NIPBL	SMARCB1	0.993	1
NUDT11	Del_3q29	0.993	1
PDGFRA	PIK3CA	0.993	1
PDGFRA	R3HDM1	0.993	1
PDGFRA	RBPJ	0.993	1
PDGFRA	RET	0.993	1
PDGFRA	SLC12A7	0.993	1
PIK3R1	PRX	0.993	1
PLCG1	Amp_3q26.33	0.993	1
PLCG1	Del_22q13.31	0.993	1
PRX	RET	0.993	1
PRX	SLC12A7	0.993	1
PTEN	14q-Del	0.993	1
R3HDM1	SETD2	0.993	1
R3HDM1	STK19	0.993	1
R3HDM1	TNRC18	0.993	1
R3HDM1	6q-Del	0.993	1
RB1	Del_22q13.31	0.993	1
RET	SETD2	0.993	1
RET	STK19	0.993	1
RET	TNRC18	0.993	1
RET	Amp_1q22	0.993	1
SETD2	SLC12A7	0.993	1
SLC12A7	STK19	0.993	1
SLC12A7	TNRC18	0.993	1
SLC12A7	6q-Del	0.993	1
SMARCA4	SMOC1	0.993	1
ZMIZ1	Xp-Del	0.993	1
ZNF292	ZNF512B	0.993	1
ZNF292	Del_19q13.42	0.993	1
19p-Amp	Del_9p23	0.993	1
14q-Del	9p-Del	0.993	1
14q-Del	Del_9p23	0.993	1
18p-Del	Xp-Del	0.993	1
18p-Del	Del_4q34.3	0.993	1
22q-Del	Del_11p15.1	0.993	1
4q-Del	Amp_12p13.32	0.993	1
Xq-Del	Del_3q13.31	0.993	1
Amp_1q22	Amp_2p24.3	0.993	1
Amp_1q32.1	Amp_19p13.3	0.993	1
Amp_2p24.3	Amp_12p13.32	0.993	1
Amp_3q26.33	Del_9p21.3	0.993	1
Amp_12p13.32	Del_9p21.3	0.993	1
Amp_13q34	Del_3q29	0.993	1
Del_3q13.31	Del_8q24.3	0.993	1
ARID1A	Del_1p32.3	0.994	1
ARID2	C4BPA	0.994	1
ARID2	DLC1	0.994	1
ARID2	G6PC	0.994	1
ARID2	MYT1	0.994	1
ARID2	NEU2	0.994	1
ARID2	PLCG1	0.994	1
ARID2	PPL	0.994	1
ARID2	RB1	0.994	1
ARID2	TRERF1	0.994	1
ATRX	IRS4	0.994	1
C4BPA	DNMT3A	0.994	1
C4BPA	MYST4	0.994	1
C4BPA	NUDT11	0.994	1
C4BPA	Amp_7p11.2	0.994	1
CREBZF	19q-Del	0.994	1
CREBZF	Del_1p36.32	0.994	1
CREBZF	Del_1p32.3	0.994	1
CUL4B	ZBTB20	0.994	1
DLC1	DNMT3A	0.994	1
DLC1	MYST4	0.994	1
DLC1	NUDT11	0.994	1
DNMT3A	FAM47C	0.994	1
DNMT3A	G6PC	0.994	1
DNMT3A	MYT1	0.994	1
DNMT3A	NEU2	0.994	1
DNMT3A	PPL	0.994	1
DNMT3A	RB1	0.994	1
DNMT3A	TRERF1	0.994	1
FAM47C	MYST4	0.994	1
FAM47C	NUDT11	0.994	1
FUBP1	SLC6A3	0.994	1
FUBP1	ZNF512B	0.994	1
G6PC	NUDT11	0.994	1
GAGE2A	Amp_7q31.2	0.994	1
GAGE2A	Amp_8q24.13	0.994	1
HTRA2	Del_Xq21.1	0.994	1
IRS4	Xp-Del	0.994	1
KRAS	Del_18q23	0.994	1
MED9	Del_6p25.3	0.994	1
MYST4	MYT1	0.994	1
MYST4	NEU2	0.994	1
MYST4	PPL	0.994	1
MYST4	RB1	0.994	1
MYST4	TRERF1	0.994	1
MYST4	Amp_7q31.2	0.994	1
MYST4	Del_18q23	0.994	1
MYT1	NUDT11	0.994	1
MYT1	Amp_10p15.3	0.994	1
MYT1	Del_7p22.3	0.994	1
NEU2	Del_7p22.3	0.994	1
NF1	Del_6q22.31	0.994	1
NOTCH1	PIK3R1	0.994	1
NUDT11	PPL	0.994	1
NUDT11	RB1	0.994	1
NUDT11	TRERF1	0.994	1
PDGFRA	ZBTB20	0.994	1
PIK3CA	ZBTB20	0.994	1
PLCG1	Amp_7p11.2	0.994	1
PRX	ZBTB20	0.994	1
RB1	Amp_7p11.2	0.994	1
RBPJ	19q-Del	0.994	1
RBPJ	Del_1p36.32	0.994	1
RBPJ	Del_1p32.3	0.994	1
SMOC1	Del_5p15.33	0.994	1
SRPX	Amp_1q32.1	0.994	1
TNRC18	ZBTB20	0.994	1
ZMIZ1	19q-Del	0.994	1
ZNF292	4q-Del	0.994	1
ZNF512B	13q-Del	0.994	1
11q-Amp	18q-Del	0.994	1
8q-Amp	11p-Del	0.994	1
8q-Amp	Amp_10p15.3	0.994	1
8q-Amp	Del_11p15.5	0.994	1
10p-Del	Del_6p25.3	0.994	1
10p-Del	Del_6q22.31	0.994	1
11p-Del	Del_3p21.31	0.994	1
13q-Del	Del_3q29	0.994	1
15q-Del	18p-Del	0.994	1
9p-Del	Del_5p15.33	0.994	1
9q-Del	Del_3q13.31	0.994	1
Amp_1q32.1	Amp_3q26.33	0.994	1
Amp_4q12	Del_9p23	0.994	1
Amp_10p15.3	Del_5p15.33	0.994	1
Amp_10p15.3	Del_7p22.3	0.994	1
Amp_11q24.1	Del_2q37.3	0.994	1
Del_3p21.31	Del_12q12	0.994	1
Del_5p15.33	Del_12q12	0.994	1
ABCA7	C4BPA	0.995	1
ABCA7	DLC1	0.995	1
ABCA7	G6PC	0.995	1
ABCA7	MYT1	0.995	1
ABCA7	NEU2	0.995	1
ABCA7	PPL	0.995	1
ABCA7	TRERF1	0.995	1
ARID1A	13q-Del	0.995	1
C14orf4	ZBTB20	0.995	1
C4BPA	C9orf79	0.995	1
C4BPA	CUL4B	0.995	1
C4BPA	PDGFRA	0.995	1
C4BPA	SETD2	0.995	1
C4BPA	STK19	0.995	1
C4BPA	TNRC18	0.995	1
C4BPA	Amp_1q22	0.995	1
C9orf79	DLC1	0.995	1
C9orf79	G6PC	0.995	1
C9orf79	MYT1	0.995	1
C9orf79	NEU2	0.995	1
C9orf79	PPL	0.995	1
C9orf79	RB1	0.995	1
C9orf79	TRERF1	0.995	1
CIB1	15q-Del	0.995	1
CREBZF	4q-Del	0.995	1
CUL4B	DLC1	0.995	1
CUL4B	G6PC	0.995	1
CUL4B	MYT1	0.995	1
CUL4B	NEU2	0.995	1
CUL4B	RB1	0.995	1
DLC1	EGFR	0.995	1
DLC1	PDGFRA	0.995	1
DLC1	PRX	0.995	1
DLC1	SETD2	0.995	1
EGFR	G6PC	0.995	1
EGFR	RB1	0.995	1
EGFR	TRERF1	0.995	1
ENGASE	PIK3CA	0.995	1
G6PC	STK19	0.995	1
G6PC	TNRC18	0.995	1
MYST4	7p-Amp	0.995	1
MYST4	1p-Del	0.995	1
MYT1	PDGFRA	0.995	1
MYT1	SETD2	0.995	1
MYT1	STK19	0.995	1
MYT1	TNRC18	0.995	1
NAP1L2	15q-Del	0.995	1
NEU2	PDGFRA	0.995	1
NEU2	STK19	0.995	1
NEU2	TNRC18	0.995	1
NF1	Del_14q24.3	0.995	1
NIPBL	NUDT11	0.995	1
NOTCH1	ROBO3	0.995	1
NOTCH1	TCF12	0.995	1
PDGFRA	PLCG1	0.995	1
PDGFRA	PPL	0.995	1
PDGFRA	RB1	0.995	1
PDGFRA	TRERF1	0.995	1
PIK3R1	SMOC1	0.995	1
PIK3R1	ZMIZ1	0.995	1
PIK3R1	1p-Del	0.995	1
PLCG1	Del_14q24.3	0.995	1
PLXNA3	R3HDM1	0.995	1
PLXNA3	RET	0.995	1
PPL	PRX	0.995	1
PPL	SETD2	0.995	1
PPL	STK19	0.995	1
PPL	TNRC18	0.995	1
PRX	RB1	0.995	1
PRX	TRERF1	0.995	1
PTPN11	7p-Amp	0.995	1
R3HDM1	SLC6A3	0.995	1
RB1	STK19	0.995	1
RB1	TNRC18	0.995	1
RB1	Del_14q24.3	0.995	1
RET	SLC6A3	0.995	1
RET	ZMIZ1	0.995	1
ROBO3	Amp_3q26.33	0.995	1
SETD2	TRERF1	0.995	1
SLC12A7	SLC6A3	0.995	1
SLC12A7	ZMIZ1	0.995	1
SMARCB1	TCF12	0.995	1
SMOC1	4p-Del	0.995	1
SRPX	10q-Del	0.995	1
STK19	TRERF1	0.995	1
TMEM216	4p-Del	0.995	1
TNRC18	TRERF1	0.995	1
TP53	Del_3q13.31	0.995	1
ZBTB20	ZNF709	0.995	1
ZNF512B	Del_2q37.3	0.995	1
7p-Amp	9p-Del	0.995	1
7p-Amp	Amp_13q34	0.995	1
8q-Amp	Amp_7p11.2	0.995	1
11p-Del	Del_4q34.3	0.995	1
11p-Del	Del_22q13.31	0.995	1
12q-Del	Del_3q13.31	0.995	1
13q-Del	Del_5q34	0.995	1
15q-Del	18q-Del	0.995	1
Amp_1q22	Amp_7q32.3	0.995	1
Amp_7q32.3	Del_9p23	0.995	1
Del_4q34.3	Del_9p21.3	0.995	1
Del_5p15.33	Del_8q24.3	0.995	1
Del_6q26	Del_Xq21.1	0.995	1
Del_18q23	Del_19q13.42	0.995	1
ABCA7	NIPBL	0.996	1
ANKRD36	IRS4	0.996	1
ARID1A	PRX	0.996	1
ARID2	BRAF	0.996	1
ARID2	ENGASE	0.996	1
ARID2	ZNF512B	0.996	1
BRAF	DNMT3A	0.996	1
BRAF	MYST4	0.996	1
BRAF	NUDT11	0.996	1
C4BPA	PLXNA3	0.996	1
C4BPA	SLC6A3	0.996	1
C4BPA	ZMIZ1	0.996	1
C9orf79	NIPBL	0.996	1
CREBZF	1p-Del	0.996	1
DLC1	PLXNA3	0.996	1
DLC1	SLC6A3	0.996	1
DLC1	ZMIZ1	0.996	1
DLX6	ZNF292	0.996	1
DNMT3A	ENGASE	0.996	1
DNMT3A	ZNF512B	0.996	1
DNMT3A	Xq-Del	0.996	1
EGFR	NF1	0.996	1
EGFR	Amp_13q34	0.996	1
EGFR	Amp_19p13.3	0.996	1
ELF4	ZNF292	0.996	1
EMG1	MYST4	0.996	1
ENGASE	MYST4	0.996	1
ENGASE	NUDT11	0.996	1
FAM47C	ZNF709	0.996	1
FUBP1	PIK3CA	0.996	1
G6PC	PLXNA3	0.996	1
G6PC	ZMIZ1	0.996	1
IDH1	11p-Del	0.996	1
IDH2	NIPBL	0.996	1
IDH2	TMEM216	0.996	1
IRS4	RET	0.996	1
IRS4	SLC12A7	0.996	1
MYST4	ZNF512B	0.996	1
MYT1	NF1	0.996	1
MYT1	PLXNA3	0.996	1
MYT1	SLC6A3	0.996	1
MYT1	ZMIZ1	0.996	1
NEU2	PLXNA3	0.996	1
NEU2	SLC6A3	0.996	1
NEU2	ZMIZ1	0.996	1
NOTCH1	SLC6A3	0.996	1
NUDT11	ZNF512B	0.996	1
PDGFRA	Del_10q26.3	0.996	1
PIK3CA	SLC6A3	0.996	1
PLCG1	PLXNA3	0.996	1
PLCG1	ZMIZ1	0.996	1
PLCG1	6q-Del	0.996	1
PLXNA3	TRERF1	0.996	1
PPL	SLC6A3	0.996	1
PPL	ZMIZ1	0.996	1
PRX	Del_18q23	0.996	1
PTPN11	10q-Del	0.996	1
R3HDM1	Xp-Del	0.996	1
RB1	SLC6A3	0.996	1
RB1	ZMIZ1	0.996	1
RBPJ	1p-Del	0.996	1
RET	22q-Del	0.996	1
ROBO3	Del_7p22.3	0.996	1
SLC6A3	TRERF1	0.996	1
SMARCB1	ZNF292	0.996	1
SRPX	10p-Del	0.996	1
TMEM216	Amp_17q25.1	0.996	1
TP53	Amp_11q24.1	0.996	1
TP53	Amp_13q34	0.996	1
TRERF1	ZMIZ1	0.996	1
ZBTB20	ZMIZ1	0.996	1
8q-Amp	Del_11p15.1	0.996	1
10q-Del	Del_13q14.2	0.996	1
11p-Del	Del_6p25.3	0.996	1
11p-Del	Del_8q24.3	0.996	1
13q-Del	Del_3p21.31	0.996	1
13q-Del	Del_5p15.33	0.996	1
9p-Del	Del_3q13.31	0.996	1
Xp-Del	Del_6p25.3	0.996	1
Xq-Del	Del_7p22.3	0.996	1
Amp_2p24.3	Amp_7q32.3	0.996	1
Amp_11q24.1	Del_Xq21.1	0.996	1
Amp_12q14.1	Amp_19p13.3	0.996	1
Amp_19p13.3	Del_9p21.3	0.996	1
Del_3q13.31	Del_11p15.5	0.996	1
Del_6q22.31	Del_Xq21.1	0.996	1
Del_7p22.3	Del_9p21.3	0.996	1
Del_9p21.3	Del_11p15.1	0.996	1
ABCA7	BRAF	0.997	1
ABCA7	ENGASE	0.997	1
ABCA7	ZNF512B	0.997	1
ANKRD36	8q-Amp	0.997	1
ANKRD36	Del_3p21.31	0.997	1
ARID1A	NIPBL	0.997	1
ARID1A	PIK3CA	0.997	1
ARID1A	1p-Del	0.997	1
ATRX	TRERF1	0.997	1
BRAF	C9orf79	0.997	1
BRAF	CUL4B	0.997	1
BRAF	PDGFRA	0.997	1
BRAF	PLXNA3	0.997	1
BRAF	PRX	0.997	1
BRAF	SETD2	0.997	1
BRAF	SLC6A3	0.997	1
BRAF	TNRC18	0.997	1
BRAF	ZMIZ1	0.997	1
C14orf4	Amp_1q32.1	0.997	1
C14orf4	Del_8q24.3	0.997	1
C4BPA	IRS4	0.997	1
C9orf79	ENGASE	0.997	1
C9orf79	ZNF512B	0.997	1
CIB1	Amp_Xp11.22	0.997	1
CIC	ZNF292	0.997	1
CREBZF	Del_19q13.42	0.997	1
CUL4B	EGFR	0.997	1
CUL4B	ENGASE	0.997	1
CUL4B	ZNF512B	0.997	1
DLC1	IRS4	0.997	1
DLX6	FUBP1	0.997	1
DNMT3A	NF1	0.997	1
EGFR	SETD2	0.997	1
ELF4	FUBP1	0.997	1
EMG1	ZMIZ1	0.997	1
ENGASE	PDGFRA	0.997	1
ENGASE	PLXNA3	0.997	1
ENGASE	PRX	0.997	1
ENGASE	SLC6A3	0.997	1
ENGASE	STK19	0.997	1
ENGASE	ZMIZ1	0.997	1
ENGASE	11p-Del	0.997	1
FAM47C	SLC6A3	0.997	1
FUBP1	NAP1L2	0.997	1
FUBP1	SRPX	0.997	1
G6PC	IRS4	0.997	1
GAGE2A	PIK3R1	0.997	1
IDH2	Del_4q34.3	0.997	1
IDH2	Del_19q13.42	0.997	1
IRS4	MYT1	0.997	1
IRS4	NEU2	0.997	1
IRS4	PPL	0.997	1
IRS4	RB1	0.997	1
IRS4	TP53	0.997	1
IRS4	TRERF1	0.997	1
IRS4	ZBTB20	0.997	1
KRAS	18p-Del	0.997	1
KRAS	Amp_11q24.1	0.997	1
MYST4	7q-Amp	0.997	1
NF1	6q-Del	0.997	1
NIPBL	ZMIZ1	0.997	1
NOTCH1	ZNF292	0.997	1
PDGFRA	ZNF512B	0.997	1
PIK3R1	15q-Del	0.997	1
PLXNA3	ZNF512B	0.997	1
PRX	ZNF512B	0.997	1
PTEN	PTPN11	0.997	1
PTEN	RET	0.997	1
PTEN	Amp_7q32.3	0.997	1
PTPN11	10p-Del	0.997	1
R3HDM1	RET	0.997	1
R3HDM1	SLC12A7	0.997	1
RB1	Del_13q14.2	0.997	1
RBPJ	RET	0.997	1
RET	SLC12A7	0.997	1
ROBO3	STK19	0.997	1
ROBO3	ZMIZ1	0.997	1
SETD2	ZNF512B	0.997	1
SMOC1	Del_14q24.3	0.997	1
STK19	ZNF512B	0.997	1
TNRC18	ZNF512B	0.997	1
TRERF1	Xp-Del	0.997	1
ZMIZ1	ZNF512B	0.997	1
ZMIZ1	Del_18q23	0.997	1
ZNF292	19q-Del	0.997	1
7p-Amp	Amp_8q24.13	0.997	1
10q-Del	13q-Del	0.997	1
10q-Del	Amp_4q12	0.997	1
12q-Del	Del_3p21.31	0.997	1
13q-Del	Del_9p21.3	0.997	1
13q-Del	Del_11p15.5	0.997	1
14q-Del	Amp_7p11.2	0.997	1
4q-Del	Amp_4q12	0.997	1
4q-Del	Del_3q29	0.997	1
9p-Del	Amp_7q32.3	0.997	1
9q-Del	Del_4q34.3	0.997	1
Xq-Del	Amp_10p15.3	0.997	1
Amp_7p11.2	Del_22q13.31	0.997	1
Amp_11q24.1	Del_3q29	0.997	1
Amp_12p13.32	Del_3p21.31	0.997	1
Amp_12p13.32	Del_9p23	0.997	1
Amp_19p13.3	Del_6p25.3	0.997	1
Del_2q37.3	Del_Xq21.1	0.997	1
Del_3q29	Del_4q34.3	0.997	1
Del_4q34.3	Del_11p15.1	0.997	1
Del_9p23	Del_13q14.2	0.997	1
ABCA7	DLX6	0.998	1
ABCA7	ELF4	0.998	1
ABCA7	NRAS	0.998	1
ABCA7	SMARCB1	0.998	1
ANKRD36	MYT1	0.998	1
ANKRD36	ZNF512B	0.998	1
ANKRD36	Del_6q22.31	0.998	1
ARID1A	CIC	0.998	1
ARID1A	IRS4	0.998	1
ARID1A	11q-Amp	0.998	1
ARID2	DLX6	0.998	1
ARID2	ELF4	0.998	1
ARID2	NAP1L2	0.998	1
ARID2	SMARCB1	0.998	1
BRAF	IRS4	0.998	1
BRAF	NF1	0.998	1
BRAF	R3HDM1	0.998	1
BRAF	RET	0.998	1
BRAF	SLC12A7	0.998	1
C14orf4	TCF12	0.998	1
C4BPA	DLC1	0.998	1
C4BPA	G6PC	0.998	1
C4BPA	MYT1	0.998	1
C4BPA	NEU2	0.998	1
C4BPA	PPL	0.998	1
C4BPA	RB1	0.998	1
C4BPA	RET	0.998	1
C4BPA	SLC12A7	0.998	1
C4BPA	TRERF1	0.998	1
C9orf79	DLX6	0.998	1
C9orf79	ELF4	0.998	1
C9orf79	NRAS	0.998	1
C9orf79	SMARCB1	0.998	1
CIB1	DNMT3A	0.998	1
CIB1	NUDT11	0.998	1
CIC	ELF4	0.998	1
CIC	MYST4	0.998	1
CREBZF	FUBP1	0.998	1
CUL4B	DLX6	0.998	1
CUL4B	ELF4	0.998	1
CUL4B	SMARCB1	0.998	1
CUL4B	ZNF292	0.998	1
DLC1	G6PC	0.998	1
DLC1	MYT1	0.998	1
DLC1	NEU2	0.998	1
DLC1	PPL	0.998	1
DLC1	PTEN	0.998	1
DLC1	R3HDM1	0.998	1
DLC1	RB1	0.998	1
DLC1	RET	0.998	1
DLC1	SLC12A7	0.998	1
DLC1	TRERF1	0.998	1
DLX6	DNMT3A	0.998	1
DLX6	MYST4	0.998	1
DLX6	NUDT11	0.998	1
DLX6	PDGFRA	0.998	1
DLX6	PLXNA3	0.998	1
DLX6	SLC6A3	0.998	1
DLX6	STK19	0.998	1
DLX6	TNRC18	0.998	1
DLX6	ZMIZ1	0.998	1
DNMT3A	ELF4	0.998	1
DNMT3A	NAP1L2	0.998	1
DNMT3A	SMARCB1	0.998	1
DNMT3A	Del_Xq21.1	0.998	1
ELF4	MYST4	0.998	1
ELF4	NUDT11	0.998	1
ELF4	PDGFRA	0.998	1
ELF4	PLXNA3	0.998	1
ELF4	PRX	0.998	1
ELF4	SETD2	0.998	1
ELF4	SLC6A3	0.998	1
ELF4	STK19	0.998	1
ELF4	TNRC18	0.998	1
ELF4	ZMIZ1	0.998	1
ENGASE	IRS4	0.998	1
ENGASE	R3HDM1	0.998	1
ENGASE	RET	0.998	1
ENGASE	SLC12A7	0.998	1
G6PC	MYT1	0.998	1
G6PC	PPL	0.998	1
G6PC	R3HDM1	0.998	1
G6PC	RB1	0.998	1
G6PC	RET	0.998	1
G6PC	SLC12A7	0.998	1
G6PC	TRERF1	0.998	1
GAGE2A	NOTCH1	0.998	1
HTRA2	RBPJ	0.998	1
HTRA2	6q-Del	0.998	1
HTRA2	Xp-Del	0.998	1
IDH1	Del_11p15.1	0.998	1
IDH2	RBPJ	0.998	1
IRS4	ROBO3	0.998	1
IRS4	ZNF512B	0.998	1
KRAS	18q-Del	0.998	1
KRT3	Del_7p22.3	0.998	1
MYST4	SMARCB1	0.998	1
MYST4	ZNF292	0.998	1
MYT1	NEU2	0.998	1
MYT1	PPL	0.998	1
MYT1	R3HDM1	0.998	1
MYT1	RB1	0.998	1
MYT1	RET	0.998	1
MYT1	SLC12A7	0.998	1
MYT1	SMARCA4	0.998	1
MYT1	TRERF1	0.998	1
MYT1	10p-Amp	0.998	1
NEU2	PPL	0.998	1
NEU2	R3HDM1	0.998	1
NEU2	RB1	0.998	1
NEU2	RET	0.998	1
NEU2	SLC12A7	0.998	1
NEU2	SMARCA4	0.998	1
NEU2	TRERF1	0.998	1
NF1	SETD2	0.998	1
NF1	10q-Del	0.998	1
NF1	Del_6q26	0.998	1
NOTCH1	SMARCB1	0.998	1
NRAS	NUDT11	0.998	1
NRAS	PRX	0.998	1
NUDT11	SMARCB1	0.998	1
NUDT11	ZNF292	0.998	1
PDGFRA	SMARCB1	0.998	1
PIK3CA	Del_1p36.32	0.998	1
PIK3CA	Del_1p32.3	0.998	1
PLCG1	PTPN11	0.998	1
PLCG1	RET	0.998	1
PLCG1	22q-Del	0.998	1
PLXNA3	SMARCB1	0.998	1
PPL	PTPN11	0.998	1
PPL	R3HDM1	0.998	1
PPL	RB1	0.998	1
PPL	RET	0.998	1
PPL	SLC12A7	0.998	1
PPL	SMARCA4	0.998	1
PPL	TRERF1	0.998	1
PRX	SMARCB1	0.998	1
PTEN	Del_9p23	0.998	1
R3HDM1	RB1	0.998	1
R3HDM1	TRERF1	0.998	1
R3HDM1	ZBTB20	0.998	1
R3HDM1	ZNF512B	0.998	1
RB1	SLC12A7	0.998	1
RB1	TRERF1	0.998	1
RB1	10q-Del	0.998	1
RB1	22q-Del	0.998	1
RET	TRERF1	0.998	1
RET	ZBTB20	0.998	1
RET	ZNF512B	0.998	1
ROBO3	Amp_2p24.3	0.998	1
SETD2	SMARCB1	0.998	1
SLC12A7	TRERF1	0.998	1
SLC12A7	ZNF512B	0.998	1
SLC12A7	Del_6q26	0.998	1
SLC6A3	SMARCB1	0.998	1
SMARCB1	STK19	0.998	1
SMARCB1	TNRC18	0.998	1
SMARCB1	ZMIZ1	0.998	1
SMOC1	Amp_Xp11.22	0.998	1
TMEM216	12q-Del	0.998	1
TNRC18	ZNF292	0.998	1
TP53	Del_3p21.31	0.998	1
ZNF512B	Amp_2p24.3	0.998	1
10p-Amp	Del_7p22.3	0.998	1
11q-Amp	Amp_17q25.1	0.998	1
19p-Amp	Amp_3q26.33	0.998	1
7q-Amp	9p-Del	0.998	1
7q-Amp	Amp_8q24.13	0.998	1
8q-Amp	Del_2q37.3	0.998	1
10q-Del	6q-Del	0.998	1
12q-Del	Amp_13q34	0.998	1
13q-Del	4p-Del	0.998	1
13q-Del	Del_11p15.1	0.998	1
4q-Del	Del_13q14.2	0.998	1
6q-Del	Xq-Del	0.998	1
Amp_1q32.1	Amp_4q12	0.998	1
Amp_4q12	Del_8q24.3	0.998	1
Amp_7q31.2	Amp_8q24.13	0.998	1
Amp_8q24.13	Del_5q34	0.998	1
Amp_10p15.3	Amp_12p13.32	0.998	1
Amp_11q24.1	Amp_13q34	0.998	1
Del_2q37.3	Del_3p21.31	0.998	1
Del_2q37.3	Del_10q26.3	0.998	1
Del_3p21.31	Del_4q34.3	0.998	1
Del_3q13.31	Del_6p25.3	0.998	1
Del_3q29	Del_13q14.2	0.998	1
Del_4q34.3	Del_11p15.5	0.998	1
Del_6p25.3	Del_9p23	0.998	1
Del_6p25.3	Del_Xq21.1	0.998	1
Del_6q22.31	Del_7p22.3	0.998	1
Del_6q26	Del_7p22.3	0.998	1
Del_7p22.3	Del_Xq21.1	0.998	1
Del_11p15.1	Del_22q13.31	0.998	1
ABCA7	C9orf79	0.999	1
ABCA7	CUL4B	0.999	1
ABCA7	PRX	0.999	1
ABCA7	SETD2	0.999	1
ABCA7	Amp_1q22	0.999	1
ARID1A	R3HDM1	0.999	1
ARID1A	Del_1p36.32	0.999	1
ARID2	DNMT3A	0.999	1
ARID2	PDGFRA	0.999	1
ARID2	TNRC18	0.999	1
ATRX	8q-Amp	0.999	1
ATRX	Amp_2p24.3	0.999	1
ATRX	Amp_10p15.3	0.999	1
BRAF	C4BPA	0.999	1
BRAF	DLC1	0.999	1
BRAF	ENGASE	0.999	1
BRAF	G6PC	0.999	1
BRAF	MYT1	0.999	1
BRAF	NEU2	0.999	1
BRAF	PPL	0.999	1
BRAF	PTEN	0.999	1
BRAF	RB1	0.999	1
BRAF	TRERF1	0.999	1
BRAF	ZNF512B	0.999	1
C14orf4	CUL4B	0.999	1
C14orf4	Amp_1q22	0.999	1
C14orf4	Amp_3q26.33	0.999	1
C14orf4	Del_6q22.31	0.999	1
C14orf4	Del_6q26	0.999	1
C4BPA	DLX6	0.999	1
C4BPA	ELF4	0.999	1
C4BPA	ENGASE	0.999	1
C4BPA	SMARCB1	0.999	1
C4BPA	SRPX	0.999	1
C4BPA	ZNF512B	0.999	1
C9orf79	CUL4B	0.999	1
C9orf79	MYST4	0.999	1
CIB1	RBPJ	0.999	1
CIB1	SLC12A7	0.999	1
CIB1	4q-Del	0.999	1
CIC	NIPBL	0.999	1
CIC	PIK3CA	0.999	1
CIC	4q-Del	0.999	1
CREBZF	NOTCH1	0.999	1
CREBZF	PIK3CA	0.999	1
CREBZF	ZNF292	0.999	1
CUL4B	PRX	0.999	1
DLC1	DLX6	0.999	1
DLC1	ELF4	0.999	1
DLC1	ENGASE	0.999	1
DLC1	SMARCB1	0.999	1
DLC1	ZNF512B	0.999	1
DLC1	Amp_7q31.2	0.999	1
DLC1	Amp_7q32.3	0.999	1
DLX6	IRS4	0.999	1
DLX6	MYT1	0.999	1
DLX6	PPL	0.999	1
DLX6	R3HDM1	0.999	1
DLX6	RB1	0.999	1
DLX6	RET	0.999	1
DLX6	SLC12A7	0.999	1
DLX6	TRERF1	0.999	1
DNMT3A	PRX	0.999	1
DNMT3A	TNRC18	0.999	1
DNMT3A	ZMIZ1	0.999	1
EGFR	SRPX	0.999	1
EGFR	9p-Del	0.999	1
EGFR	Amp_12q14.1	0.999	1
EGFR	Del_22q13.31	0.999	1
ELF4	G6PC	0.999	1
ELF4	IRS4	0.999	1
ELF4	MYT1	0.999	1
ELF4	NEU2	0.999	1
ELF4	PPL	0.999	1
ELF4	R3HDM1	0.999	1
ELF4	RB1	0.999	1
ELF4	RET	0.999	1
ELF4	SLC12A7	0.999	1
ELF4	TRERF1	0.999	1
ENGASE	G6PC	0.999	1
ENGASE	MYT1	0.999	1
ENGASE	NEU2	0.999	1
ENGASE	PPL	0.999	1
ENGASE	RB1	0.999	1
ENGASE	SMARCA4	0.999	1
ENGASE	TRERF1	0.999	1
ENGASE	ZNF512B	0.999	1
FUBP1	ZNF709	0.999	1
G6PC	KRT3	0.999	1
G6PC	SMARCB1	0.999	1
G6PC	ZNF512B	0.999	1
HTRA2	Xq-Del	0.999	1
IDH1	Del_2q37.3	0.999	1
IDH1	Del_12q12	0.999	1
IDH2	1p-Del	0.999	1
IDH2	Del_1p36.32	0.999	1
IDH2	Del_1p32.3	0.999	1
IRS4	SMARCB1	0.999	1
KRAS	11q-Amp	0.999	1
MYST4	NOTCH1	0.999	1
MYST4	NUDT11	0.999	1
MYST4	PLXNA3	0.999	1
MYST4	SLC6A3	0.999	1
MYST4	ZMIZ1	0.999	1
MYST4	19q-Del	0.999	1
MYST4	Del_1p36.32	0.999	1
MYT1	PIK3CA	0.999	1
MYT1	ZNF512B	0.999	1
NAP1L2	RBPJ	0.999	1
NEU2	SMARCB1	0.999	1
NEU2	ZNF512B	0.999	1
NF1	SMARCB1	0.999	1
NF1	10p-Del	0.999	1
NF1	Del_9p21.3	0.999	1
NIPBL	4p-Del	0.999	1
NRAS	SLC12A7	0.999	1
NUDT11	PRX	0.999	1
NUDT11	SETD2	0.999	1
NUDT11	SLC6A3	0.999	1
NUDT11	SMARCA4	0.999	1
NUDT11	ZNF709	0.999	1
PIK3CA	19q-Del	0.999	1
PIK3CA	1p-Del	0.999	1
PLCG1	Del_10q26.3	0.999	1
PPL	SMARCB1	0.999	1
PPL	ZBTB20	0.999	1
PPL	ZNF512B	0.999	1
PPL	Del_3q29	0.999	1
PRX	PTEN	0.999	1
PRX	SETD2	0.999	1
PRX	18p-Del	0.999	1
PRX	18q-Del	0.999	1
PTEN	19p-Amp	0.999	1
PTEN	7p-Amp	0.999	1
PTEN	7q-Amp	0.999	1
PTEN	22q-Del	0.999	1
PTEN	Amp_3q26.33	0.999	1
PTEN	Amp_7q31.2	0.999	1
R3HDM1	SMARCB1	0.999	1
RB1	SMARCB1	0.999	1
RB1	ZNF512B	0.999	1
RB1	10p-Del	0.999	1
RB1	13q-Del	0.999	1
RET	SMARCB1	0.999	1
RET	14q-Del	0.999	1
SLC12A7	SMARCB1	0.999	1
SLC6A3	ZNF292	0.999	1
SMARCA4	ZNF512B	0.999	1
SMARCB1	TRERF1	0.999	1
SMOC1	Del_6q22.31	0.999	1
SMOC1	Del_6q26	0.999	1
STK19	TMEM216	0.999	1
STK19	19p-Amp	0.999	1
STK19	7q-Amp	0.999	1
STK19	Amp_7q32.3	0.999	1
TP53	Amp_Xp11.22	0.999	1
TP53	Del_6q22.31	0.999	1
TP53	Del_6q26	0.999	1
TRERF1	ZNF512B	0.999	1
10p-Amp	Del_3p21.31	0.999	1
10p-Amp	Del_8q24.3	0.999	1
7q-Amp	8q-Amp	0.999	1
7q-Amp	Del_9p23	0.999	1
10p-Del	6q-Del	0.999	1
11p-Del	Amp_10p15.3	0.999	1
13q-Del	4q-Del	0.999	1
13q-Del	Amp_4q12	0.999	1
13q-Del	Del_4q34.3	0.999	1
13q-Del	Del_10q26.3	0.999	1
15q-Del	Del_19q13.42	0.999	1
19q-Del	4q-Del	0.999	1
22q-Del	Amp_7p11.2	0.999	1
22q-Del	Del_11p15.5	0.999	1
4p-Del	Del_1p32.3	0.999	1
4p-Del	Del_13q14.2	0.999	1
4q-Del	9q-Del	0.999	1
4q-Del	Del_1p32.3	0.999	1
4q-Del	Del_3p21.31	0.999	1
6q-Del	Xp-Del	0.999	1
6q-Del	Del_10q26.3	0.999	1
6q-Del	Del_Xq21.1	0.999	1
9p-Del	Amp_4q12	0.999	1
9p-Del	Amp_12p13.32	0.999	1
9p-Del	Del_6p25.3	0.999	1
9q-Del	Xp-Del	0.999	1
9q-Del	Amp_1q32.1	0.999	1
9q-Del	Del_8q24.3	0.999	1
Xp-Del	Del_8q24.3	0.999	1
Xp-Del	Del_Xq21.1	0.999	1
Amp_3q26.33	Del_3p21.31	0.999	1
Amp_4q12	Amp_12p13.32	0.999	1
Amp_4q12	Del_11p15.5	0.999	1
Amp_4q12	Del_11p15.1	0.999	1
Amp_7q32.3	Amp_8q24.13	0.999	1
Amp_8q24.13	Amp_12p13.32	0.999	1
Amp_8q24.13	Del_11p15.5	0.999	1
Amp_10p15.3	Del_3p21.31	0.999	1
Amp_10p15.3	Del_8q24.3	0.999	1
Amp_10p15.3	Del_11p15.1	0.999	1
Amp_12p13.32	Del_2q37.3	0.999	1
Amp_12q14.1	Amp_13q34	0.999	1
Amp_13q34	Del_3p21.31	0.999	1
Amp_13q34	Del_11p15.5	0.999	1
Amp_17q25.1	Del_2q37.3	0.999	1
Amp_19p13.3	Del_10q26.3	0.999	1
Del_1p36.32	Del_18q23	0.999	1
Del_3p21.31	Del_3q29	0.999	1
Del_3p21.31	Del_9p21.3	0.999	1
Del_3p21.31	Del_11p15.1	0.999	1
Del_3q29	Del_6p25.3	0.999	1
Del_4q34.3	Del_Xq21.1	0.999	1
Del_5p15.33	Del_5q34	0.999	1
Del_5p15.33	Del_9p21.3	0.999	1
Del_6q22.31	Del_22q13.31	0.999	1
Del_14q24.3	Del_22q13.31	0.999	1
ABCA7	R3HDM1	1	1
ABCA7	RB1	1	1
ARID1A	DNMT3A	1	1
ARID1A	ENGASE	1	1
ARID1A	ZMIZ1	1	1
ARID1A	ZNF512B	1	1
ARID2	R3HDM1	1	1
ARID2	RBPJ	1	1
ARID2	RET	1	1
ATRX	IDH1	1	1
ATRX	TP53	1	1
ATRX	11p-Del	1	1
ATRX	12q-Del	1	1
ATRX	Amp_8q24.13	1	1
ATRX	Amp_12p13.32	1	1
ATRX	Amp_Xp11.22	1	1
ATRX	Del_2q37.3	1	1
ATRX	Del_5p15.33	1	1
ATRX	Del_11p15.5	1	1
ATRX	Del_11p15.1	1	1
BRAF	DLX6	1	1
BRAF	ELF4	1	1
BRAF	SMARCB1	1	1
BRAF	STK19	1	1
C14orf4	6q-Del	1	1
C14orf4	Del_6p25.3	1	1
C4BPA	EGFR	1	1
C4BPA	PRX	1	1
C4BPA	R3HDM1	1	1
C9orf79	KRAS	1	1
C9orf79	PLXNA3	1	1
CIB1	HTRA2	1	1
CIB1	TMEM216	1	1
CIB1	4p-Del	1	1
CIB1	Amp_4q12	1	1
CIB1	Del_4q34.3	1	1
CIC	CREBZF	1	1
CIC	FUBP1	1	1
CIC	IDH1	1	1
CIC	NOTCH1	1	1
CIC	15q-Del	1	1
CIC	19q-Del	1	1
CIC	1p-Del	1	1
CIC	4p-Del	1	1
CIC	Del_1p36.32	1	1
CIC	Del_1p32.3	1	1
CIC	Del_19q13.42	1	1
CREBZF	IDH1	1	1
CUL4B	PLXNA3	1	1
CUL4B	PPL	1	1
CUL4B	TRERF1	1	1
DLC1	STK19	1	1
DLC1	TNRC18	1	1
DLC1	7p-Amp	1	1
DLC1	7q-Amp	1	1
DLC1	Amp_7p11.2	1	1
DLX6	ELF4	1	1
DLX6	ENGASE	1	1
DLX6	G6PC	1	1
DLX6	NEU2	1	1
DLX6	PRX	1	1
DLX6	SETD2	1	1
DLX6	SMARCB1	1	1
DLX6	ZNF512B	1	1
DNMT3A	IRS4	1	1
DNMT3A	R3HDM1	1	1
DNMT3A	Xp-Del	1	1
EGFR	PTEN	1	1
EGFR	19p-Amp	1	1
EGFR	7p-Amp	1	1
EGFR	7q-Amp	1	1
EGFR	10p-Del	1	1
EGFR	10q-Del	1	1
EGFR	14q-Del	1	1
EGFR	22q-Del	1	1
EGFR	Amp_1q32.1	1	1
EGFR	Amp_7p11.2	1	1
EGFR	Amp_7q31.2	1	1
EGFR	Amp_7q32.3	1	1
EGFR	Del_9p23	1	1
EGFR	Del_9p21.3	1	1
EGFR	Del_10q26.3	1	1
ELF4	ENGASE	1	1
ELF4	FAM47C	1	1
ELF4	SMARCB1	1	1
ELF4	ZNF512B	1	1
EMG1	IDH1	1	1
ENGASE	SETD2	1	1
ENGASE	SMARCB1	1	1
ENGASE	TNRC18	1	1
ENGASE	Amp_Xp11.22	1	1
FAM47C	ZNF512B	1	1
FUBP1	IDH1	1	1
FUBP1	NOTCH1	1	1
FUBP1	PIK3R1	1	1
FUBP1	19q-Del	1	1
FUBP1	1p-Del	1	1
FUBP1	Del_1p36.32	1	1
FUBP1	Del_1p32.3	1	1
FUBP1	Del_19q13.42	1	1
G6PC	MYST4	1	1
G6PC	NEU2	1	1
G6PC	PDGFRA	1	1
G6PC	PRX	1	1
G6PC	SETD2	1	1
G6PC	SLC6A3	1	1
HTRA2	STK19	1	1
HTRA2	TMEM216	1	1
HTRA2	Del_6q22.31	1	1
HTRA2	Del_6q26	1	1
HTRA2	Del_7p22.3	1	1
IDH1	KRAS	1	1
IDH1	NOTCH1	1	1
IDH1	NRAS	1	1
IDH1	ROBO3	1	1
IDH1	SMOC1	1	1
IDH1	TP53	1	1
IDH1	ZNF709	1	1
IDH1	10p-Amp	1	1
IDH1	12q-Del	1	1
IDH1	19q-Del	1	1
IDH1	1p-Del	1	1
IDH1	Amp_2p24.3	1	1
IDH1	Amp_8q24.13	1	1
IDH1	Amp_10p15.3	1	1
IDH1	Amp_12p13.32	1	1
IDH1	Amp_Xp11.22	1	1
IDH1	Del_1p36.32	1	1
IDH1	Del_1p32.3	1	1
IDH1	Del_5q34	1	1
IDH1	Del_11p15.5	1	1
IDH1	Del_19q13.42	1	1
IDH2	19q-Del	1	1
IRS4	PRX	1	1
IRS4	R3HDM1	1	1
IRS4	SLC6A3	1	1
IRS4	ZMIZ1	1	1
KRAS	MYST4	1	1
KRAS	PLXNA3	1	1
KRAS	ZMIZ1	1	1
MYT1	PRX	1	1
MYT1	SMARCB1	1	1
MYT1	TP53	1	1
NEU2	NUDT11	1	1
NEU2	PRX	1	1
NEU2	SETD2	1	1
NEU2	ZNF292	1	1
NF1	PTEN	1	1
NF1	RB1	1	1
NF1	14q-Del	1	1
NF1	22q-Del	1	1
NF1	Del_6p25.3	1	1
NF1	Del_22q13.31	1	1
NIPBL	19q-Del	1	1
NIPBL	1p-Del	1	1
NIPBL	Del_1p36.32	1	1
NIPBL	Del_1p32.3	1	1
NIPBL	Del_19q13.42	1	1
NOTCH1	NUDT11	1	1
NOTCH1	19q-Del	1	1
NOTCH1	1p-Del	1	1
NOTCH1	Del_1p36.32	1	1
NOTCH1	Del_1p32.3	1	1
NOTCH1	Del_19q13.42	1	1
PDGFRA	SLC6A3	1	1
PDGFRA	Amp_4q12	1	1
PIK3R1	Del_19q13.42	1	1
PLCG1	10p-Del	1	1
PLCG1	10q-Del	1	1
PLCG1	14q-Del	1	1
PLXNA3	PPL	1	1
PLXNA3	RB1	1	1
PLXNA3	SETD2	1	1
PLXNA3	SLC12A7	1	1
PLXNA3	ZMIZ1	1	1
PRX	R3HDM1	1	1
PRX	ZMIZ1	1	1
PTEN	RB1	1	1
PTEN	10p-Del	1	1
PTEN	10q-Del	1	1
PTEN	9p-Del	1	1
PTEN	Amp_1q32.1	1	1
PTEN	Amp_7p11.2	1	1
PTEN	Del_9p21.3	1	1
PTEN	Del_10q26.3	1	1
PTEN	Del_22q13.31	1	1
PTPN11	Amp_3q26.33	1	1
R3HDM1	ZMIZ1	1	1
RB1	RET	1	1
RB1	SETD2	1	1
RB1	14q-Del	1	1
RBPJ	TMEM216	1	1
RBPJ	4p-Del	1	1
RBPJ	4q-Del	1	1
RBPJ	Del_4q34.3	1	1
SLC6A3	ZNF512B	1	1
SMARCA4	SMARCB1	1	1
SMARCB1	ZNF512B	1	1
SMOC1	6q-Del	1	1
SRPX	Amp_1q22	1	1
STK19	Amp_2p24.3	1	1
STK19	Amp_7q31.2	1	1
TP53	10p-Amp	1	1
TP53	8q-Amp	1	1
TP53	11p-Del	1	1
TP53	12q-Del	1	1
TP53	Amp_2p24.3	1	1
TP53	Amp_8q24.13	1	1
TP53	Amp_10p15.3	1	1
TP53	Amp_12p13.32	1	1
TP53	Del_2q37.3	1	1
TP53	Del_3q29	1	1
TP53	Del_5p15.33	1	1
TP53	Del_5q34	1	1
TP53	Del_8q24.3	1	1
TP53	Del_11p15.5	1	1
TP53	Del_11p15.1	1	1
TP53	Del_12q12	1	1
TP53	Del_Xq21.1	1	1
ZBTB20	19q-Del	1	1
ZBTB20	1p-Del	1	1
ZBTB20	Del_1p36.32	1	1
ZBTB20	Del_1p32.3	1	1
ZBTB20	Del_19q13.42	1	1
10p-Amp	Amp_8q24.13	1	1
10p-Amp	Amp_10p15.3	1	1
10p-Amp	Amp_Xp11.22	1	1
10p-Amp	Del_4q34.3	1	1
10p-Amp	Del_5q34	1	1
10p-Amp	Del_11p15.5	1	1
11q-Amp	Amp_11q24.1	1	1
19p-Amp	7p-Amp	1	1
19p-Amp	7q-Amp	1	1
19p-Amp	10p-Del	1	1
19p-Amp	10q-Del	1	1
19p-Amp	Amp_1q32.1	1	1
19p-Amp	Amp_7p11.2	1	1
19p-Amp	Amp_7q31.2	1	1
19p-Amp	Amp_7q32.3	1	1
19p-Amp	Amp_12q14.1	1	1
19p-Amp	Amp_19p13.3	1	1
19p-Amp	Del_9p21.3	1	1
19p-Amp	Del_10q26.3	1	1
7p-Amp	7q-Amp	1	1
7p-Amp	8q-Amp	1	1
7p-Amp	10p-Del	1	1
7p-Amp	10q-Del	1	1
7p-Amp	Amp_1q32.1	1	1
7p-Amp	Amp_3q26.33	1	1
7p-Amp	Amp_7p11.2	1	1
7p-Amp	Amp_7q31.2	1	1
7p-Amp	Amp_7q32.3	1	1
7p-Amp	Amp_12q14.1	1	1
7p-Amp	Amp_19p13.3	1	1
7p-Amp	Del_9p21.3	1	1
7p-Amp	Del_10q26.3	1	1
7q-Amp	10p-Del	1	1
7q-Amp	10q-Del	1	1
7q-Amp	Amp_1q32.1	1	1
7q-Amp	Amp_3q26.33	1	1
7q-Amp	Amp_7p11.2	1	1
7q-Amp	Amp_7q31.2	1	1
7q-Amp	Amp_7q32.3	1	1
7q-Amp	Amp_12q14.1	1	1
7q-Amp	Amp_19p13.3	1	1
7q-Amp	Del_9p21.3	1	1
7q-Amp	Del_10q26.3	1	1
8q-Amp	Amp_7q31.2	1	1
8q-Amp	Amp_7q32.3	1	1
8q-Amp	Amp_8q24.13	1	1
10p-Del	10q-Del	1	1
10p-Del	14q-Del	1	1
10p-Del	22q-Del	1	1
10p-Del	9p-Del	1	1
10p-Del	Amp_1q32.1	1	1
10p-Del	Amp_3q26.33	1	1
10p-Del	Amp_7p11.2	1	1
10p-Del	Amp_7q31.2	1	1
10p-Del	Amp_7q32.3	1	1
10p-Del	Amp_12q14.1	1	1
10p-Del	Amp_19p13.3	1	1
10p-Del	Del_6q26	1	1
10p-Del	Del_9p23	1	1
10p-Del	Del_9p21.3	1	1
10p-Del	Del_10q26.3	1	1
10p-Del	Del_14q24.3	1	1
10p-Del	Del_22q13.31	1	1
10q-Del	14q-Del	1	1
10q-Del	22q-Del	1	1
10q-Del	9p-Del	1	1
10q-Del	Amp_1q32.1	1	1
10q-Del	Amp_3q26.33	1	1
10q-Del	Amp_7p11.2	1	1
10q-Del	Amp_7q31.2	1	1
10q-Del	Amp_7q32.3	1	1
10q-Del	Amp_12q14.1	1	1
10q-Del	Amp_19p13.3	1	1
10q-Del	Del_6q26	1	1
10q-Del	Del_9p23	1	1
10q-Del	Del_9p21.3	1	1
10q-Del	Del_10q26.3	1	1
10q-Del	Del_14q24.3	1	1
10q-Del	Del_22q13.31	1	1
11p-Del	12q-Del	1	1
11p-Del	Amp_4q12	1	1
11p-Del	Amp_12p13.32	1	1
11p-Del	Amp_Xp11.22	1	1
11p-Del	Del_2q37.3	1	1
11p-Del	Del_3q29	1	1
11p-Del	Del_5p15.33	1	1
11p-Del	Del_5q34	1	1
11p-Del	Del_11p15.5	1	1
11p-Del	Del_11p15.1	1	1
11p-Del	Del_12q12	1	1
12q-Del	Del_5q34	1	1
12q-Del	Del_11p15.5	1	1
12q-Del	Del_11p15.1	1	1
12q-Del	Del_12q12	1	1
13q-Del	22q-Del	1	1
13q-Del	Del_13q14.2	1	1
13q-Del	Del_22q13.31	1	1
14q-Del	22q-Del	1	1
14q-Del	6q-Del	1	1
14q-Del	Del_6p25.3	1	1
14q-Del	Del_6q22.31	1	1
14q-Del	Del_6q26	1	1
14q-Del	Del_9p21.3	1	1
14q-Del	Del_10q26.3	1	1
14q-Del	Del_14q24.3	1	1
14q-Del	Del_22q13.31	1	1
15q-Del	19q-Del	1	1
15q-Del	1p-Del	1	1
15q-Del	Del_1p36.32	1	1
15q-Del	Del_1p32.3	1	1
18p-Del	18q-Del	1	1
18p-Del	19q-Del	1	1
18p-Del	1p-Del	1	1
18p-Del	Del_1p36.32	1	1
18p-Del	Del_1p32.3	1	1
18p-Del	Del_18q23	1	1
18p-Del	Del_19q13.42	1	1
18q-Del	19q-Del	1	1
18q-Del	1p-Del	1	1
18q-Del	Del_1p36.32	1	1
18q-Del	Del_1p32.3	1	1
18q-Del	Del_18q23	1	1
18q-Del	Del_19q13.42	1	1
19q-Del	1p-Del	1	1
19q-Del	4p-Del	1	1
19q-Del	Del_1p36.32	1	1
19q-Del	Del_1p32.3	1	1
19q-Del	Del_18q23	1	1
19q-Del	Del_19q13.42	1	1
1p-Del	4p-Del	1	1
1p-Del	4q-Del	1	1
1p-Del	Del_1p36.32	1	1
1p-Del	Del_1p32.3	1	1
1p-Del	Del_18q23	1	1
1p-Del	Del_19q13.42	1	1
22q-Del	6q-Del	1	1
22q-Del	9p-Del	1	1
22q-Del	Del_3p21.31	1	1
22q-Del	Del_3q29	1	1
22q-Del	Del_6p25.3	1	1
22q-Del	Del_6q22.31	1	1
22q-Del	Del_6q26	1	1
22q-Del	Del_9p23	1	1
22q-Del	Del_9p21.3	1	1
22q-Del	Del_10q26.3	1	1
22q-Del	Del_13q14.2	1	1
22q-Del	Del_14q24.3	1	1
22q-Del	Del_22q13.31	1	1
4p-Del	4q-Del	1	1
4p-Del	Del_1p36.32	1	1
4p-Del	Del_4q34.3	1	1
4p-Del	Del_19q13.42	1	1
4q-Del	Del_1p36.32	1	1
4q-Del	Del_4q34.3	1	1
4q-Del	Del_5q34	1	1
6q-Del	9p-Del	1	1
6q-Del	Del_6p25.3	1	1
6q-Del	Del_6q22.31	1	1
6q-Del	Del_6q26	1	1
6q-Del	Del_9p23	1	1
6q-Del	Del_9p21.3	1	1
6q-Del	Del_14q24.3	1	1
6q-Del	Del_22q13.31	1	1
9p-Del	9q-Del	1	1
9p-Del	Amp_1q32.1	1	1
9p-Del	Amp_7p11.2	1	1
9p-Del	Del_3p21.31	1	1
9p-Del	Del_6q22.31	1	1
9p-Del	Del_6q26	1	1
9p-Del	Del_7p22.3	1	1
9p-Del	Del_9p23	1	1
9p-Del	Del_9p21.3	1	1
9p-Del	Del_10q26.3	1	1
9p-Del	Del_14q24.3	1	1
9p-Del	Del_22q13.31	1	1
9q-Del	Amp_4q12	1	1
9q-Del	Del_9p23	1	1
9q-Del	Del_9p21.3	1	1
Xp-Del	Xq-Del	1	1
Xp-Del	Del_6q22.31	1	1
Xp-Del	Del_6q26	1	1
Xq-Del	Del_6q22.31	1	1
Xq-Del	Del_6q26	1	1
Xq-Del	Del_Xq21.1	1	1
Amp_1q22	Amp_1q32.1	1	1
Amp_1q32.1	Amp_7p11.2	1	1
Amp_1q32.1	Amp_7q31.2	1	1
Amp_1q32.1	Amp_7q32.3	1	1
Amp_1q32.1	Amp_12q14.1	1	1
Amp_1q32.1	Del_9p23	1	1
Amp_1q32.1	Del_9p21.3	1	1
Amp_1q32.1	Del_10q26.3	1	1
Amp_3q26.33	Amp_7p11.2	1	1
Amp_3q26.33	Amp_7q31.2	1	1
Amp_3q26.33	Amp_7q32.3	1	1
Amp_3q26.33	Amp_12q14.1	1	1
Amp_3q26.33	Del_10q26.3	1	1
Amp_4q12	Amp_10p15.3	1	1
Amp_4q12	Amp_12q14.1	1	1
Amp_4q12	Del_3q29	1	1
Amp_4q12	Del_4q34.3	1	1
Amp_4q12	Del_5q34	1	1
Amp_4q12	Del_9p21.3	1	1
Amp_4q12	Del_10q26.3	1	1
Amp_4q12	Del_13q14.2	1	1
Amp_7p11.2	Amp_7q31.2	1	1
Amp_7p11.2	Amp_7q32.3	1	1
Amp_7p11.2	Amp_12q14.1	1	1
Amp_7p11.2	Amp_19p13.3	1	1
Amp_7p11.2	Del_9p23	1	1
Amp_7p11.2	Del_9p21.3	1	1
Amp_7p11.2	Del_10q26.3	1	1
Amp_7q31.2	Amp_7q32.3	1	1
Amp_7q31.2	Amp_12q14.1	1	1
Amp_7q31.2	Amp_19p13.3	1	1
Amp_7q31.2	Del_9p21.3	1	1
Amp_7q31.2	Del_10q26.3	1	1
Amp_7q32.3	Amp_12q14.1	1	1
Amp_7q32.3	Amp_19p13.3	1	1
Amp_7q32.3	Del_9p21.3	1	1
Amp_7q32.3	Del_10q26.3	1	1
Amp_8q24.13	Amp_10p15.3	1	1
Amp_8q24.13	Amp_Xp11.22	1	1
Amp_8q24.13	Del_5p15.33	1	1
Amp_10p15.3	Del_4q34.3	1	1
Amp_10p15.3	Del_11p15.5	1	1
Amp_12p13.32	Del_3q29	1	1
Amp_12p13.32	Del_4q34.3	1	1
Amp_12p13.32	Del_5p15.33	1	1
Amp_12p13.32	Del_5q34	1	1
Amp_12p13.32	Del_11p15.5	1	1
Amp_12p13.32	Del_11p15.1	1	1
Amp_12p13.32	Del_22q13.31	1	1
Amp_12q14.1	Del_10q26.3	1	1
Amp_13q34	Del_10q26.3	1	1
Amp_13q34	Del_11p15.1	1	1
Amp_13q34	Del_13q14.2	1	1
Amp_17q25.1	Del_7p22.3	1	1
Amp_Xp11.22	Del_5p15.33	1	1
Amp_Xp11.22	Del_11p15.5	1	1
Amp_Xp11.22	Del_11p15.1	1	1
Del_1p36.32	Del_1p32.3	1	1
Del_1p36.32	Del_19q13.42	1	1
Del_1p32.3	Del_18q23	1	1
Del_1p32.3	Del_19q13.42	1	1
Del_2q37.3	Del_11p15.5	1	1
Del_2q37.3	Del_11p15.1	1	1
Del_3p21.31	Del_3q13.31	1	1
Del_3p21.31	Del_9p23	1	1
Del_3p21.31	Del_11p15.5	1	1
Del_3p21.31	Del_22q13.31	1	1
Del_3q13.31	Del_3q29	1	1
Del_3q29	Del_8q24.3	1	1
Del_3q29	Del_11p15.5	1	1
Del_3q29	Del_11p15.1	1	1
Del_3q29	Del_22q13.31	1	1
Del_4q34.3	Del_5q34	1	1
Del_4q34.3	Del_13q14.2	1	1
Del_5p15.33	Del_9p23	1	1
Del_5p15.33	Del_11p15.5	1	1
Del_5p15.33	Del_11p15.1	1	1
Del_5q34	Del_11p15.5	1	1
Del_5q34	Del_11p15.1	1	1
Del_5q34	Del_12q12	1	1
Del_5q34	Del_13q14.2	1	1
Del_6p25.3	Del_6q22.31	1	1
Del_6p25.3	Del_6q26	1	1
Del_6p25.3	Del_8q24.3	1	1
Del_6p25.3	Del_9p21.3	1	1
Del_6p25.3	Del_10q26.3	1	1
Del_6p25.3	Del_22q13.31	1	1
Del_6q22.31	Del_6q26	1	1
Del_6q22.31	Del_9p23	1	1
Del_6q22.31	Del_9p21.3	1	1
Del_6q22.31	Del_10q26.3	1	1
Del_6q22.31	Del_14q24.3	1	1
Del_6q26	Del_9p23	1	1
Del_6q26	Del_9p21.3	1	1
Del_6q26	Del_10q26.3	1	1
Del_6q26	Del_14q24.3	1	1
Del_6q26	Del_22q13.31	1	1
Del_7p22.3	Del_9p23	1	1
Del_9p23	Del_9p21.3	1	1
Del_9p23	Del_10q26.3	1	1
Del_9p23	Del_14q24.3	1	1
Del_9p23	Del_22q13.31	1	1
Del_9p21.3	Del_10q26.3	1	1
Del_9p21.3	Del_13q14.2	1	1
Del_9p21.3	Del_14q24.3	1	1
Del_9p21.3	Del_22q13.31	1	1
Del_10q26.3	Del_13q14.2	1	1
Del_10q26.3	Del_14q24.3	1	1
Del_10q26.3	Del_22q13.31	1	1
Del_11p15.5	Del_11p15.1	1	1
Del_11p15.5	Del_12q12	1	1
Del_11p15.5	Del_13q14.2	1	1
Del_11p15.5	Del_22q13.31	1	1
Del_11p15.1	Del_12q12	1	1
Del_11p15.1	Del_13q14.2	1	1
Del_13q14.2	Del_22q13.31	1	1
IDH1	PTEN	1.02e-10	1
EGFR	IDH1	1.03e-19	1
Del_1p32.3	Del_10q26.3	1.09e-07	1
1p-Del	Del_6q22.31	1.11e-08	1
1p-Del	Amp_8q24.13	1.13e-06	1
IDH1	14q-Del	1.16e-05	1
Amp_10p15.3	Del_1p36.32	1.1e-07	1
1p-Del	Del_9p21.3	1.21e-09	1
11p-Del	Del_1p32.3	1.24e-07	1
Amp_10p15.3	Del_1p32.3	1.24e-07	1
CIC	10p-Del	1.27e-06	1
1p-Del	Del_2q37.3	1.31e-06	1
10p-Amp	Del_1p36.32	1.34e-05	1
19q-Del	Del_10q26.3	1.34e-14	1
CIC	Amp_8q24.13	1.36e-05	1
1p-Del	Del_10q26.3	1.36e-13	1
TP53	1p-Del	1.42e-47	1
10p-Amp	Del_1p32.3	1.45e-05	1
Del_1p36.32	Del_9p21.3	1.45e-06	1
EGFR	TP53	1.4e-08	1
Amp_8q24.13	Del_1p36.32	1.52e-06	1
Amp_7p11.2	Del_19q13.42	1.54e-08	1
10p-Del	19q-Del	1.57e-10	1
IDH1	Amp_7q31.2	1.58e-05	1
19q-Del	Amp_8q24.13	1.59e-05	1
ATRX	FUBP1	1.62e-08	1
10q-Del	Del_19q13.42	1.67e-11	1
IDH1	22q-Del	1.75e-07	1
10p-Del	1p-Del	1.75e-08	1
Del_1p36.32	Del_10q26.3	1.76e-08	1
ATRX	CIC	1.78e-19	1
IDH1	NF1	1.85e-09	1
1p-Del	Del_11p15.1	1.88e-07	1
ATRX	18q-Del	2.05e-06	1
Amp_12p13.32	Del_1p32.3	2.07e-05	1
IDH1	IDH2	2.14e-14	1
IDH1	Amp_12q14.1	2.1e-06	1
IDH1	7p-Amp	2.23e-11	1
Amp_8q24.13	Del_1p32.3	2.24e-07	1
ATRX	19q-Del	2.35e-27	1
IDH1	10p-Del	2.48e-41	1
19q-Del	Del_22q13.31	2.51e-06	1
11p-Del	Del_1p36.32	2.61e-05	1
ATRX	1p-Del	2.63e-37	1
IDH1	Del_9p21.3	2.69e-10	1
19q-Del	6q-Del	2.73e-05	1
19q-Del	Amp_12p13.32	2.73e-05	1
1p-Del	Del_22q13.31	2.93e-07	1
TP53	Del_1p36.32	2.93e-50	1
Del_1p36.32	Del_2q37.3	3.01e-07	1
Del_1p36.32	Del_6q26	3.04e-06	1
IDH1	Del_10q26.3	3.04e-19	1
1p-Del	6q-Del	3.26e-06	1
19q-Del	Del_6q26	3.27e-05	1
ATRX	PIK3CA	3.35e-05	1
Del_1p32.3	Del_2q37.3	3.41e-07	1
FUBP1	Del_10q26.3	3.51e-05	1
10p-Amp	1p-Del	3.51e-05	1
TP53	Del_1p32.3	3.53e-48	1
19q-Del	Del_9p21.3	3.58e-09	1
19q-Del	Amp_10p15.3	3.75e-06	1
Del_1p32.3	Del_6q26	3.77e-07	1
CIC	Del_9p21.3	3.83e-06	1
11p-Del	19q-Del	3.89e-05	1
10q-Del	19q-Del	4.07e-11	1
ATRX	Del_1p32.3	4.12e-41	1
1p-Del	Del_9p23	4.17e-05	1
1p-Del	Amp_7p11.2	4.17e-06	1
Del_1p32.3	Del_11p15.1	4.1e-08	1
11p-Del	1p-Del	4.39e-07	1
1p-Del	Amp_10p15.3	4.39e-07	1
IDH1	19p-Amp	4.3e-07	1
ATRX	Del_1p36.32	4.3e-38	1
EGFR	Del_19q13.42	4.42e-07	1
Del_1p36.32	Del_11p15.1	4.46e-06	1
IDH1	7q-Amp	4.51e-09	1
ATRX	EGFR	4.56e-07	1
IDH1	Amp_7p11.2	4.61e-24	1
19q-Del	Del_11p15.1	4.63e-05	1
19q-Del	Amp_7p11.2	4.75e-06	1
Del_1p36.32	Del_11p15.5	4.76e-09	1
IDH1	10q-Del	4.81e-37	1
TP53	19q-Del	4.81e-37	1
CIC	Del_6q26	4.82e-06	1
1p-Del	Del_6q26	4.84e-09	1
CIC	Del_10q26.3	5.09e-09	1
1p-Del	22q-Del	5.19e-05	1
Del_1p32.3	Del_5p15.33	5.19e-05	1
10q-Del	1p-Del	5.22e-09	1
ATRX	10p-Del	5.29e-13	1
Del_10q26.3	Del_19q13.42	5.45e-09	1
1p-Del	Del_11p15.5	5.4e-12	1
FUBP1	TP53	5.55e-08	1
ATRX	Del_19q13.42	5.56e-13	1
Del_1p32.3	Del_11p15.5	5.64e-13	1
CIC	10q-Del	5.69e-07	1
1p-Del	Amp_12p13.32	5.6e-05	1
CIC	Amp_7q31.2	5.74e-06	1
Del_1p32.3	Del_9p21.3	5.93e-06	1
22q-Del	Del_19q13.42	5.9e-05	1
10p-Del	Del_19q13.42	6.15e-12	1
CIC	Del_11p15.5	6.42e-08	1
19q-Del	Del_6q22.31	6.54e-05	1
CIC	Del_22q13.31	6.59e-05	1
IDH1	Amp_1q32.1	6.73e-09	1
IDH1	Del_22q13.31	6.74e-06	1
IDH1	Amp_7q32.3	6.77e-06	1
TP53	10p-Del	6.97e-11	1
Del_1p36.32	Del_6q22.31	7.43e-07	1
Del_1p32.3	Del_9p23	8.02e-05	1
TP53	10q-Del	8.07e-10	1
CIC	Del_6q22.31	8.18e-06	1
Del_1p32.3	Del_6q22.31	8.45e-07	1
CIC	11p-Del	8.53e-05	1
CIC	Amp_10p15.3	8.53e-05	1
TP53	Del_19q13.42	8.66e-16	1
CIC	Amp_7q32.3	8.84e-07	1
ATRX	10q-Del	9.37e-11	1
Del_9p21.3	Del_19q13.42	9.44e-06	1
CIC	Del_11p15.1	9.73e-05	1
19q-Del	Del_11p15.5	9.8e-09	1
CIC	TP53	9.92e-28	1
