[1] "ofn"        "-oTLIHC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LIHC-TP/22542932/LIHC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LIHC-TP/22531241/transformed.cor.cli.txt"

nPatients in clinical file=440, in cluster file=370, common to both=370
[1]  61 370
[1] "AMP PEAK  1(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                          271                            99 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                          271                            99 
[1] "AMP PEAK  2(1Q42.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q42.2) MUTATED AMP PEAK  2(1Q42.2) WILD-TYPE 
                          268                           102 
  AMP PEAK  2(1Q42.2) MUTATED AMP PEAK  2(1Q42.2) WILD-TYPE 
                          268                           102 
[1] "AMP PEAK  3(2P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(2P24.1) MUTATED AMP PEAK  3(2P24.1) WILD-TYPE 
                           65                           305 
  AMP PEAK  3(2P24.1) MUTATED AMP PEAK  3(2P24.1) WILD-TYPE 
                           65                           305 
[1] "AMP PEAK  4(2Q33.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE 
                           64                           306 
  AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE 
                           64                           306 
[1] "AMP PEAK  5(3Q26.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE 
                            77                            293 
  AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE 
                            77                            293 
[1] "AMP PEAK  6(4P14) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(4P14) MUTATED AMP PEAK  6(4P14) WILD-TYPE 
                         54                         316 
  AMP PEAK  6(4P14) MUTATED AMP PEAK  6(4P14) WILD-TYPE 
                         54                         316 
[1] "AMP PEAK  7(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           163                            207 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           163                            207 
[1] "AMP PEAK  8(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE 
                          135                           235 
  AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE 
                          135                           235 
[1] "AMP PEAK  9(6P25.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE 
                          159                           211 
  AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE 
                          159                           211 
[1] "AMP PEAK 10(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE 
                          158                           212 
  AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE 
                          158                           212 
[1] "AMP PEAK 11(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(6Q12) MUTATED AMP PEAK 11(6Q12) WILD-TYPE 
                        109                         261 
  AMP PEAK 11(6Q12) MUTATED AMP PEAK 11(6Q12) WILD-TYPE 
                        109                         261 
[1] "AMP PEAK 12(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE 
                         83                         287 
  AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE 
                         83                         287 
[1] "AMP PEAK 13(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE 
                          120                           250 
  AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE 
                          120                           250 
[1] "AMP PEAK 14(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE 
                           231                            139 
  AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE 
                           231                            139 
[1] "AMP PEAK 15(9Q34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(9Q34.2) MUTATED AMP PEAK 15(9Q34.2) WILD-TYPE 
                           47                           323 
  AMP PEAK 15(9Q34.2) MUTATED AMP PEAK 15(9Q34.2) WILD-TYPE 
                           47                           323 
[1] "AMP PEAK 16(10P15.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE 
                            72                            298 
  AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE 
                            72                            298 
[1] "AMP PEAK 17(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE 
                            57                            313 
  AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE 
                            57                            313 
[1] "AMP PEAK 18(13Q32.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE 
                            67                            303 
  AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE 
                            67                            303 
[1] "AMP PEAK 19(13Q33.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE 
                            67                            303 
  AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE 
                            67                            303 
[1] "AMP PEAK 20(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE 
                            54                            316 
  AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE 
                            54                            316 
[1] "AMP PEAK 21(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(17P11.2) MUTATED AMP PEAK 21(17P11.2) WILD-TYPE 
                            46                            324 
  AMP PEAK 21(17P11.2) MUTATED AMP PEAK 21(17P11.2) WILD-TYPE 
                            46                            324 
[1] "AMP PEAK 22(17Q25.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE 
                           145                            225 
  AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE 
                           145                            225 
[1] "AMP PEAK 23(19P13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE 
                             69                             301 
  AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE 
                             69                             301 
[1] "AMP PEAK 24(19Q13.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE 
                             91                             279 
  AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE 
                             91                             279 
[1] "AMP PEAK 25(20Q13.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(20Q13.13) MUTATED AMP PEAK 25(20Q13.13) WILD-TYPE 
                            124                             246 
  AMP PEAK 25(20Q13.13) MUTATED AMP PEAK 25(20Q13.13) WILD-TYPE 
                            124                             246 
[1] "AMP PEAK 26(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(20Q13.33) MUTATED AMP PEAK 26(20Q13.33) WILD-TYPE 
                            128                             242 
  AMP PEAK 26(20Q13.33) MUTATED AMP PEAK 26(20Q13.33) WILD-TYPE 
                            128                             242 
[1] "AMP PEAK 27(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE 
                         87                         283 
  AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE 
                         87                         283 
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                           162                            208 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                           162                            208 
[1] "DEL PEAK  2(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                           142                            228 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                           142                            228 
[1] "DEL PEAK  3(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           52                           318 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           52                           318 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           62                           308 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           62                           308 
[1] "DEL PEAK  5(3P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE 
                         73                         297 
  DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE 
                         73                         297 
[1] "DEL PEAK  6(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                           85                           285 
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                           85                           285 
[1] "DEL PEAK  7(4Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE 
                          171                           199 
  DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE 
                          171                           199 
[1] "DEL PEAK  8(4Q24) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q24) MUTATED DEL PEAK  8(4Q24) WILD-TYPE 
                        173                         197 
  DEL PEAK  8(4Q24) MUTATED DEL PEAK  8(4Q24) WILD-TYPE 
                        173                         197 
[1] "DEL PEAK  9(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                          172                           198 
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                          172                           198 
[1] "DEL PEAK 10(6Q27) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE 
                        136                         234 
  DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE 
                        136                         234 
[1] "DEL PEAK 11(7Q36.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE 
                           34                           336 
  DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE 
                           34                           336 
[1] "DEL PEAK 12(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                          247                           123 
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                          247                           123 
[1] "DEL PEAK 13(8P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE 
                        242                         128 
  DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE 
                        242                         128 
[1] "DEL PEAK 14(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                          150                           220 
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                          150                           220 
[1] "DEL PEAK 15(9Q31.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9Q31.3) MUTATED DEL PEAK 15(9Q31.3) WILD-TYPE 
                          119                           251 
  DEL PEAK 15(9Q31.3) MUTATED DEL PEAK 15(9Q31.3) WILD-TYPE 
                          119                           251 
[1] "DEL PEAK 16(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                             97                             273 
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                             97                             273 
[1] "DEL PEAK 17(10Q26.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(10Q26.13) MUTATED DEL PEAK 17(10Q26.13) WILD-TYPE 
                            105                             265 
  DEL PEAK 17(10Q26.13) MUTATED DEL PEAK 17(10Q26.13) WILD-TYPE 
                            105                             265 
[1] "DEL PEAK 18(11Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(11Q14.1) MUTATED DEL PEAK 18(11Q14.1) WILD-TYPE 
                            77                            293 
  DEL PEAK 18(11Q14.1) MUTATED DEL PEAK 18(11Q14.1) WILD-TYPE 
                            77                            293 
[1] "DEL PEAK 19(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE 
                            93                            277 
  DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE 
                            93                            277 
[1] "DEL PEAK 20(12P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(12P12.1) MUTATED DEL PEAK 20(12P12.1) WILD-TYPE 
                            78                            292 
  DEL PEAK 20(12P12.1) MUTATED DEL PEAK 20(12P12.1) WILD-TYPE 
                            78                            292 
[1] "DEL PEAK 21(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(12Q24.33) MUTATED DEL PEAK 21(12Q24.33) WILD-TYPE 
                             59                             311 
  DEL PEAK 21(12Q24.33) MUTATED DEL PEAK 21(12Q24.33) WILD-TYPE 
                             59                             311 
[1] "DEL PEAK 22(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE 
                           179                            191 
  DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE 
                           179                            191 
[1] "DEL PEAK 23(14Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE 
                           131                            239 
  DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE 
                           131                            239 
[1] "DEL PEAK 24(14Q32.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(14Q32.33) MUTATED DEL PEAK 24(14Q32.33) WILD-TYPE 
                            133                             237 
  DEL PEAK 24(14Q32.33) MUTATED DEL PEAK 24(14Q32.33) WILD-TYPE 
                            133                             237 
[1] "DEL PEAK 25(15Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(15Q26.3) MUTATED DEL PEAK 25(15Q26.3) WILD-TYPE 
                            79                            291 
  DEL PEAK 25(15Q26.3) MUTATED DEL PEAK 25(15Q26.3) WILD-TYPE 
                            79                            291 
[1] "DEL PEAK 26(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                           162                            208 
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                           162                            208 
[1] "DEL PEAK 27(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE 
                           226                            144 
  DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE 
                           226                            144 
[1] "DEL PEAK 28(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE 
                           195                            175 
  DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE 
                           195                            175 
[1] "DEL PEAK 29(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE 
                            94                            276 
  DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE 
                            94                            276 
[1] "DEL PEAK 30(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                            87                            283 
  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                            87                            283 
[1] "DEL PEAK 31(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE 
                            29                            341 
  DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE 
                            29                            341 
[1] "DEL PEAK 32(22Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(22Q12.1) MUTATED DEL PEAK 32(22Q12.1) WILD-TYPE 
                            79                            291 
  DEL PEAK 32(22Q12.1) MUTATED DEL PEAK 32(22Q12.1) WILD-TYPE 
                            79                            291 
[1] "DEL PEAK 33(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE 
                             83                             287 
  DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE 
                             83                             287 
[1] "DEL PEAK 34(XQ26.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(XQ26.2) MUTATED DEL PEAK 34(XQ26.2) WILD-TYPE 
                           67                           303 
  DEL PEAK 34(XQ26.2) MUTATED DEL PEAK 34(XQ26.2) WILD-TYPE 
                           67                           303 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 370 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "RPPA_CNMF is excluded in the analysis because there is no more than two cases of (unique non-NA values)"
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "RPPA_CHIERARCHICAL is excluded in the analysis because there is no more than two cases of (unique non-NA values)"
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 370 columns, 0 survival variables, and 8 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED       42    116    113
  AMP PEAK  1(1Q21.3) WILD-TYPE     51     35     13
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          42                            51
  CLUS_2                         116                            35
  CLUS_3                         113                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED       54    119     98
  AMP PEAK  1(1Q21.3) WILD-TYPE     39     42     18
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          54                            39
  CLUS_2                         119                            42
  CLUS_3                          98                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED       49     51     66     46     54
  AMP PEAK  1(1Q21.3) WILD-TYPE     18     35      5     25     15
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          49                            18
  CLUS_2                          51                            35
  CLUS_3                          66                             5
  CLUS_4                          46                            25
  CLUS_5                          54                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED       36     38     74     72     46
  AMP PEAK  1(1Q21.3) WILD-TYPE     18     18     40     12     10
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          36                            18
  CLUS_2                          38                            18
  CLUS_3                          74                            40
  CLUS_4                          72                            12
  CLUS_5                          46                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.3) MUTATED       35     42     64     60     33     33
  AMP PEAK  1(1Q21.3) WILD-TYPE      5     21     28     24     13      7
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          35                             5
  CLUS_2                          42                            21
  CLUS_3                          64                            28
  CLUS_4                          60                            24
  CLUS_5                          33                            13
  CLUS_6                          33                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED       37     60     45     86     39
  AMP PEAK  1(1Q21.3) WILD-TYPE      7     35     11     36      9
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          37                             7
  CLUS_2                          60                            35
  CLUS_3                          45                            11
  CLUS_4                          86                            36
  CLUS_5                          39                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.3) MUTATED       87     57     69     39
  AMP PEAK  1(1Q21.3) WILD-TYPE     20     24     33     11
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          87                            20
  CLUS_2                          57                            24
  CLUS_3                          69                            33
  CLUS_4                          39                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED       55     57     72     29     39
  AMP PEAK  1(1Q21.3) WILD-TYPE     15     25     28      5     15
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          55                            15
  CLUS_2                          57                            25
  CLUS_3                          72                            28
  CLUS_4                          29                             5
  CLUS_5                          39                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q42.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q42.2) MUTATED       50    105    113
  AMP PEAK  2(1Q42.2) WILD-TYPE     43     46     13
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q42.2) MUTATED AMP PEAK  2(1Q42.2) WILD-TYPE
  CLUS_1                          50                            43
  CLUS_2                         105                            46
  CLUS_3                         113                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q42.2) MUTATED       55    119     94
  AMP PEAK  2(1Q42.2) WILD-TYPE     38     42     22
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q42.2) MUTATED AMP PEAK  2(1Q42.2) WILD-TYPE
  CLUS_1                          55                            38
  CLUS_2                         119                            42
  CLUS_3                          94                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q42.2) MUTATED       46     46     67     49     55
  AMP PEAK  2(1Q42.2) WILD-TYPE     21     40      4     22     14
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q42.2) MUTATED AMP PEAK  2(1Q42.2) WILD-TYPE
  CLUS_1                          46                            21
  CLUS_2                          46                            40
  CLUS_3                          67                             4
  CLUS_4                          49                            22
  CLUS_5                          55                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q42.2) MUTATED       33     39     71     73     47
  AMP PEAK  2(1Q42.2) WILD-TYPE     21     17     43     11      9
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q42.2) MUTATED AMP PEAK  2(1Q42.2) WILD-TYPE
  CLUS_1                          33                            21
  CLUS_2                          39                            17
  CLUS_3                          71                            43
  CLUS_4                          73                            11
  CLUS_5                          47                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q42.2) MUTATED       29     40     67     63     31     34
  AMP PEAK  2(1Q42.2) WILD-TYPE     11     23     25     21     15      6
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q42.2) MUTATED AMP PEAK  2(1Q42.2) WILD-TYPE
  CLUS_1                          29                            11
  CLUS_2                          40                            23
  CLUS_3                          67                            25
  CLUS_4                          63                            21
  CLUS_5                          31                            15
  CLUS_6                          34                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q42.2) MUTATED       32     58     45     87     42
  AMP PEAK  2(1Q42.2) WILD-TYPE     12     37     11     35      6
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q42.2) MUTATED AMP PEAK  2(1Q42.2) WILD-TYPE
  CLUS_1                          32                            12
  CLUS_2                          58                            37
  CLUS_3                          45                            11
  CLUS_4                          87                            35
  CLUS_5                          42                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q42.2) MUTATED       86     61     65     37
  AMP PEAK  2(1Q42.2) WILD-TYPE     21     20     37     13
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q42.2) MUTATED AMP PEAK  2(1Q42.2) WILD-TYPE
  CLUS_1                          86                            21
  CLUS_2                          61                            20
  CLUS_3                          65                            37
  CLUS_4                          37                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q42.2) MUTATED       56     54     73     25     41
  AMP PEAK  2(1Q42.2) WILD-TYPE     14     28     27      9     13
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q42.2) MUTATED AMP PEAK  2(1Q42.2) WILD-TYPE
  CLUS_1                          56                            14
  CLUS_2                          54                            28
  CLUS_3                          73                            27
  CLUS_4                          25                             9
  CLUS_5                          41                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(2P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.1) MUTATED        9     34     22
  AMP PEAK  3(2P24.1) WILD-TYPE     84    117    104
D3V1, multiclass
        clus
vv       AMP PEAK  3(2P24.1) MUTATED AMP PEAK  3(2P24.1) WILD-TYPE
  CLUS_1                           9                            84
  CLUS_2                          34                           117
  CLUS_3                          22                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.1) MUTATED       16     29     20
  AMP PEAK  3(2P24.1) WILD-TYPE     77    132     96
D3V2, multiclass
        clus
vv       AMP PEAK  3(2P24.1) MUTATED AMP PEAK  3(2P24.1) WILD-TYPE
  CLUS_1                          16                            77
  CLUS_2                          29                           132
  CLUS_3                          20                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(2P24.1) MUTATED       16     18     14      8      7
  AMP PEAK  3(2P24.1) WILD-TYPE     51     68     57     63     62
D3V3, multiclass
        clus
vv       AMP PEAK  3(2P24.1) MUTATED AMP PEAK  3(2P24.1) WILD-TYPE
  CLUS_1                          16                            51
  CLUS_2                          18                            68
  CLUS_3                          14                            57
  CLUS_4                           8                            63
  CLUS_5                           7                            62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(2P24.1) MUTATED       17      3     21     16      6
  AMP PEAK  3(2P24.1) WILD-TYPE     37     53     93     68     50
D3V4, multiclass
        clus
vv       AMP PEAK  3(2P24.1) MUTATED AMP PEAK  3(2P24.1) WILD-TYPE
  CLUS_1                          17                            37
  CLUS_2                           3                            53
  CLUS_3                          21                            93
  CLUS_4                          16                            68
  CLUS_5                           6                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(2P24.1) MUTATED       12     15      8     13      6     10
  AMP PEAK  3(2P24.1) WILD-TYPE     28     48     84     71     40     30
D3V5, multiclass
        clus
vv       AMP PEAK  3(2P24.1) MUTATED AMP PEAK  3(2P24.1) WILD-TYPE
  CLUS_1                          12                            28
  CLUS_2                          15                            48
  CLUS_3                           8                            84
  CLUS_4                          13                            71
  CLUS_5                           6                            40
  CLUS_6                          10                            30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(2P24.1) MUTATED       14     20      9     16      5
  AMP PEAK  3(2P24.1) WILD-TYPE     30     75     47    106     43
D3V6, multiclass
        clus
vv       AMP PEAK  3(2P24.1) MUTATED AMP PEAK  3(2P24.1) WILD-TYPE
  CLUS_1                          14                            30
  CLUS_2                          20                            75
  CLUS_3                           9                            47
  CLUS_4                          16                           106
  CLUS_5                           5                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.1) MUTATED       28     13     14      6
  AMP PEAK  3(2P24.1) WILD-TYPE     79     68     88     44
D3V7, multiclass
        clus
vv       AMP PEAK  3(2P24.1) MUTATED AMP PEAK  3(2P24.1) WILD-TYPE
  CLUS_1                          28                            79
  CLUS_2                          13                            68
  CLUS_3                          14                            88
  CLUS_4                           6                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(2P24.1) MUTATED       17     16     15      8      5
  AMP PEAK  3(2P24.1) WILD-TYPE     53     66     85     26     49
D3V8, multiclass
        clus
vv       AMP PEAK  3(2P24.1) MUTATED AMP PEAK  3(2P24.1) WILD-TYPE
  CLUS_1                          17                            53
  CLUS_2                          16                            66
  CLUS_3                          15                            85
  CLUS_4                           8                            26
  CLUS_5                           5                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(2Q33.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q33.1) MUTATED        8     30     26
  AMP PEAK  4(2Q33.1) WILD-TYPE     85    121    100
D4V1, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                           8                            85
  CLUS_2                          30                           121
  CLUS_3                          26                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q33.1) MUTATED       15     29     20
  AMP PEAK  4(2Q33.1) WILD-TYPE     78    132     96
D4V2, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                          15                            78
  CLUS_2                          29                           132
  CLUS_3                          20                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2Q33.1) MUTATED       16      9     18      9     10
  AMP PEAK  4(2Q33.1) WILD-TYPE     51     77     53     62     59
D4V3, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                          16                            51
  CLUS_2                           9                            77
  CLUS_3                          18                            53
  CLUS_4                           9                            62
  CLUS_5                          10                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2Q33.1) MUTATED       15      4     14     20      9
  AMP PEAK  4(2Q33.1) WILD-TYPE     39     52    100     64     47
D4V4, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                          15                            39
  CLUS_2                           4                            52
  CLUS_3                          14                           100
  CLUS_4                          20                            64
  CLUS_5                           9                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2Q33.1) MUTATED        9     17      6     10     10     11
  AMP PEAK  4(2Q33.1) WILD-TYPE     31     46     86     74     36     29
D4V5, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                           9                            31
  CLUS_2                          17                            46
  CLUS_3                           6                            86
  CLUS_4                          10                            74
  CLUS_5                          10                            36
  CLUS_6                          11                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2Q33.1) MUTATED       12     20      9     18      4
  AMP PEAK  4(2Q33.1) WILD-TYPE     32     75     47    104     44
D4V6, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                          12                            32
  CLUS_2                          20                            75
  CLUS_3                           9                            47
  CLUS_4                          18                           104
  CLUS_5                           4                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2Q33.1) MUTATED       30     10     11     10
  AMP PEAK  4(2Q33.1) WILD-TYPE     77     71     91     40
D4V7, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                          30                            77
  CLUS_2                          10                            71
  CLUS_3                          11                            91
  CLUS_4                          10                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2Q33.1) MUTATED       16     15     16      9      5
  AMP PEAK  4(2Q33.1) WILD-TYPE     54     67     84     25     49
D4V8, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                          16                            54
  CLUS_2                          15                            67
  CLUS_3                          16                            84
  CLUS_4                           9                            25
  CLUS_5                           5                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.31) MUTATED        7     51     19
  AMP PEAK  5(3Q26.31) WILD-TYPE     86    100    107
D5V1, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                            7                             86
  CLUS_2                           51                            100
  CLUS_3                           19                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.31) MUTATED       16     42     19
  AMP PEAK  5(3Q26.31) WILD-TYPE     77    119     97
D5V2, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           16                             77
  CLUS_2                           42                            119
  CLUS_3                           19                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.31) MUTATED       22     23     12     11      9
  AMP PEAK  5(3Q26.31) WILD-TYPE     45     63     59     60     60
D5V3, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           22                             45
  CLUS_2                           23                             63
  CLUS_3                           12                             59
  CLUS_4                           11                             60
  CLUS_5                            9                             60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.31) MUTATED       17      5     30     16      9
  AMP PEAK  5(3Q26.31) WILD-TYPE     37     51     84     68     47
D5V4, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           17                             37
  CLUS_2                            5                             51
  CLUS_3                           30                             84
  CLUS_4                           16                             68
  CLUS_5                            9                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.31) MUTATED       14     15     15     14     13      5
  AMP PEAK  5(3Q26.31) WILD-TYPE     26     48     77     70     33     35
D5V5, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           14                             26
  CLUS_2                           15                             48
  CLUS_3                           15                             77
  CLUS_4                           14                             70
  CLUS_5                           13                             33
  CLUS_6                            5                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.31) MUTATED       17     24      9     22      4
  AMP PEAK  5(3Q26.31) WILD-TYPE     27     71     47    100     44
D5V6, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           17                             27
  CLUS_2                           24                             71
  CLUS_3                            9                             47
  CLUS_4                           22                            100
  CLUS_5                            4                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.31) MUTATED       24     13     19     15
  AMP PEAK  5(3Q26.31) WILD-TYPE     83     68     83     35
D5V7, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           24                             83
  CLUS_2                           13                             68
  CLUS_3                           19                             83
  CLUS_4                           15                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.31) MUTATED       14     20     20     12      5
  AMP PEAK  5(3Q26.31) WILD-TYPE     56     62     80     22     49
D5V8, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           14                             56
  CLUS_2                           20                             62
  CLUS_3                           20                             80
  CLUS_4                           12                             22
  CLUS_5                            5                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(4P14) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4P14) MUTATED        7     27     20
  AMP PEAK  6(4P14) WILD-TYPE     86    124    106
D6V1, multiclass
        clus
vv       AMP PEAK  6(4P14) MUTATED AMP PEAK  6(4P14) WILD-TYPE
  CLUS_1                         7                          86
  CLUS_2                        27                         124
  CLUS_3                        20                         106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4P14) MUTATED       11     17     26
  AMP PEAK  6(4P14) WILD-TYPE     82    144     90
D6V2, multiclass
        clus
vv       AMP PEAK  6(4P14) MUTATED AMP PEAK  6(4P14) WILD-TYPE
  CLUS_1                        11                          82
  CLUS_2                        17                         144
  CLUS_3                        26                          90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4P14) MUTATED       12     11     21      8      1
  AMP PEAK  6(4P14) WILD-TYPE     55     75     50     63     68
D6V3, multiclass
        clus
vv       AMP PEAK  6(4P14) MUTATED AMP PEAK  6(4P14) WILD-TYPE
  CLUS_1                        12                          55
  CLUS_2                        11                          75
  CLUS_3                        21                          50
  CLUS_4                         8                          63
  CLUS_5                         1                          68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4P14) MUTATED       10      8     13     21      1
  AMP PEAK  6(4P14) WILD-TYPE     44     48    101     63     55
D6V4, multiclass
        clus
vv       AMP PEAK  6(4P14) MUTATED AMP PEAK  6(4P14) WILD-TYPE
  CLUS_1                        10                          44
  CLUS_2                         8                          48
  CLUS_3                        13                         101
  CLUS_4                        21                          63
  CLUS_5                         1                          55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4P14) MUTATED        7     14      9      6     10      8
  AMP PEAK  6(4P14) WILD-TYPE     33     49     83     78     36     32
D6V5, multiclass
        clus
vv       AMP PEAK  6(4P14) MUTATED AMP PEAK  6(4P14) WILD-TYPE
  CLUS_1                         7                          33
  CLUS_2                        14                          49
  CLUS_3                         9                          83
  CLUS_4                         6                          78
  CLUS_5                        10                          36
  CLUS_6                         8                          32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4P14) MUTATED        8     15     10     20      1
  AMP PEAK  6(4P14) WILD-TYPE     36     80     46    102     47
D6V6, multiclass
        clus
vv       AMP PEAK  6(4P14) MUTATED AMP PEAK  6(4P14) WILD-TYPE
  CLUS_1                         8                          36
  CLUS_2                        15                          80
  CLUS_3                        10                          46
  CLUS_4                        20                         102
  CLUS_5                         1                          47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4P14) MUTATED       18     16      7     13
  AMP PEAK  6(4P14) WILD-TYPE     89     65     95     37
D6V7, multiclass
        clus
vv       AMP PEAK  6(4P14) MUTATED AMP PEAK  6(4P14) WILD-TYPE
  CLUS_1                        18                          89
  CLUS_2                        16                          65
  CLUS_3                         7                          95
  CLUS_4                        13                          37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4P14) MUTATED       14     16     18      5      1
  AMP PEAK  6(4P14) WILD-TYPE     56     66     82     29     53
D6V8, multiclass
        clus
vv       AMP PEAK  6(4P14) MUTATED AMP PEAK  6(4P14) WILD-TYPE
  CLUS_1                        14                          56
  CLUS_2                        16                          66
  CLUS_3                        18                          82
  CLUS_4                         5                          29
  CLUS_5                         1                          53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       16     80     67
  AMP PEAK  7(5P15.33) WILD-TYPE     77     71     59
D7V1, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           16                             77
  CLUS_2                           80                             71
  CLUS_3                           67                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       32     82     49
  AMP PEAK  7(5P15.33) WILD-TYPE     61     79     67
D7V2, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           32                             61
  CLUS_2                           82                             79
  CLUS_3                           49                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       38     39     27     29     28
  AMP PEAK  7(5P15.33) WILD-TYPE     29     47     44     42     41
D7V3, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           38                             29
  CLUS_2                           39                             47
  CLUS_3                           27                             44
  CLUS_4                           29                             42
  CLUS_5                           28                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       27     22     55     34     23
  AMP PEAK  7(5P15.33) WILD-TYPE     27     34     59     50     33
D7V4, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           27                             27
  CLUS_2                           22                             34
  CLUS_3                           55                             59
  CLUS_4                           34                             50
  CLUS_5                           23                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       22     33     31     35     22     17
  AMP PEAK  7(5P15.33) WILD-TYPE     18     30     61     49     24     23
D7V5, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           22                             18
  CLUS_2                           33                             30
  CLUS_3                           31                             61
  CLUS_4                           35                             49
  CLUS_5                           22                             24
  CLUS_6                           17                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       26     47     28     43     16
  AMP PEAK  7(5P15.33) WILD-TYPE     18     48     28     79     32
D7V6, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           26                             18
  CLUS_2                           47                             48
  CLUS_3                           28                             28
  CLUS_4                           43                             79
  CLUS_5                           16                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P15.33) MUTATED       57     33     39     23
  AMP PEAK  7(5P15.33) WILD-TYPE     50     48     63     27
D7V7, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           57                             50
  CLUS_2                           33                             48
  CLUS_3                           39                             63
  CLUS_4                           23                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       37     40     36     18     21
  AMP PEAK  7(5P15.33) WILD-TYPE     33     42     64     16     33
D7V8, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           37                             33
  CLUS_2                           40                             42
  CLUS_3                           36                             64
  CLUS_4                           18                             16
  CLUS_5                           21                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(5Q35.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5Q35.3) MUTATED       20     49     66
  AMP PEAK  8(5Q35.3) WILD-TYPE     73    102     60
D8V1, multiclass
        clus
vv       AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE
  CLUS_1                          20                            73
  CLUS_2                          49                           102
  CLUS_3                          66                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5Q35.3) MUTATED       24     66     45
  AMP PEAK  8(5Q35.3) WILD-TYPE     69     95     71
D8V2, multiclass
        clus
vv       AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE
  CLUS_1                          24                            69
  CLUS_2                          66                            95
  CLUS_3                          45                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(5Q35.3) MUTATED       23     31     22     27     29
  AMP PEAK  8(5Q35.3) WILD-TYPE     44     55     49     44     40
D8V3, multiclass
        clus
vv       AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE
  CLUS_1                          23                            44
  CLUS_2                          31                            55
  CLUS_3                          22                            49
  CLUS_4                          27                            44
  CLUS_5                          29                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(5Q35.3) MUTATED       18     20     40     33     21
  AMP PEAK  8(5Q35.3) WILD-TYPE     36     36     74     51     35
D8V4, multiclass
        clus
vv       AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE
  CLUS_1                          18                            36
  CLUS_2                          20                            36
  CLUS_3                          40                            74
  CLUS_4                          33                            51
  CLUS_5                          21                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(5Q35.3) MUTATED       13     24     33     34     19      9
  AMP PEAK  8(5Q35.3) WILD-TYPE     27     39     59     50     27     31
D8V5, multiclass
        clus
vv       AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE
  CLUS_1                          13                            27
  CLUS_2                          24                            39
  CLUS_3                          33                            59
  CLUS_4                          34                            50
  CLUS_5                          19                            27
  CLUS_6                           9                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(5Q35.3) MUTATED       16     34     21     44     17
  AMP PEAK  8(5Q35.3) WILD-TYPE     28     61     35     78     31
D8V6, multiclass
        clus
vv       AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE
  CLUS_1                          16                            28
  CLUS_2                          34                            61
  CLUS_3                          21                            35
  CLUS_4                          44                            78
  CLUS_5                          17                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(5Q35.3) MUTATED       36     33     34     19
  AMP PEAK  8(5Q35.3) WILD-TYPE     71     48     68     31
D8V7, multiclass
        clus
vv       AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE
  CLUS_1                          36                            71
  CLUS_2                          33                            48
  CLUS_3                          34                            68
  CLUS_4                          19                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(5Q35.3) MUTATED       23     25     38     13     23
  AMP PEAK  8(5Q35.3) WILD-TYPE     47     57     62     21     31
D8V8, multiclass
        clus
vv       AMP PEAK  8(5Q35.3) MUTATED AMP PEAK  8(5Q35.3) WILD-TYPE
  CLUS_1                          23                            47
  CLUS_2                          25                            57
  CLUS_3                          38                            62
  CLUS_4                          13                            21
  CLUS_5                          23                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6P25.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6P25.2) MUTATED       15     79     65
  AMP PEAK  9(6P25.2) WILD-TYPE     78     72     61
D9V1, multiclass
        clus
vv       AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE
  CLUS_1                          15                            78
  CLUS_2                          79                            72
  CLUS_3                          65                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6P25.2) MUTATED       23     79     57
  AMP PEAK  9(6P25.2) WILD-TYPE     70     82     59
D9V2, multiclass
        clus
vv       AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE
  CLUS_1                          23                            70
  CLUS_2                          79                            82
  CLUS_3                          57                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6P25.2) MUTATED       32     33     38     22     34
  AMP PEAK  9(6P25.2) WILD-TYPE     35     53     33     49     35
D9V3, multiclass
        clus
vv       AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE
  CLUS_1                          32                            35
  CLUS_2                          33                            53
  CLUS_3                          38                            33
  CLUS_4                          22                            49
  CLUS_5                          34                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6P25.2) MUTATED       24     16     45     46     28
  AMP PEAK  9(6P25.2) WILD-TYPE     30     40     69     38     28
D9V4, multiclass
        clus
vv       AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE
  CLUS_1                          24                            30
  CLUS_2                          16                            40
  CLUS_3                          45                            69
  CLUS_4                          46                            38
  CLUS_5                          28                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6P25.2) MUTATED       24     27     26     37     21     20
  AMP PEAK  9(6P25.2) WILD-TYPE     16     36     66     47     25     20
D9V5, multiclass
        clus
vv       AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE
  CLUS_1                          24                            16
  CLUS_2                          27                            36
  CLUS_3                          26                            66
  CLUS_4                          37                            47
  CLUS_5                          21                            25
  CLUS_6                          20                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6P25.2) MUTATED       24     34     26     45     26
  AMP PEAK  9(6P25.2) WILD-TYPE     20     61     30     77     22
D9V6, multiclass
        clus
vv       AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE
  CLUS_1                          24                            20
  CLUS_2                          34                            61
  CLUS_3                          26                            30
  CLUS_4                          45                            77
  CLUS_5                          26                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6P25.2) MUTATED       49     32     39     21
  AMP PEAK  9(6P25.2) WILD-TYPE     58     49     63     29
D9V7, multiclass
        clus
vv       AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE
  CLUS_1                          49                            58
  CLUS_2                          32                            49
  CLUS_3                          39                            63
  CLUS_4                          21                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6P25.2) MUTATED       35     30     38     16     22
  AMP PEAK  9(6P25.2) WILD-TYPE     35     52     62     18     32
D9V8, multiclass
        clus
vv       AMP PEAK  9(6P25.2) MUTATED AMP PEAK  9(6P25.2) WILD-TYPE
  CLUS_1                          35                            35
  CLUS_2                          30                            52
  CLUS_3                          38                            62
  CLUS_4                          16                            18
  CLUS_5                          22                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P21.1) MUTATED       17     79     62
  AMP PEAK 10(6P21.1) WILD-TYPE     76     72     64
D10V1, multiclass
        clus
vv       AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE
  CLUS_1                          17                            76
  CLUS_2                          79                            72
  CLUS_3                          62                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P21.1) MUTATED       25     80     53
  AMP PEAK 10(6P21.1) WILD-TYPE     68     81     63
D10V2, multiclass
        clus
vv       AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE
  CLUS_1                          25                            68
  CLUS_2                          80                            81
  CLUS_3                          53                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6P21.1) MUTATED       27     40     37     19     35
  AMP PEAK 10(6P21.1) WILD-TYPE     40     46     34     52     34
D10V3, multiclass
        clus
vv       AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE
  CLUS_1                          27                            40
  CLUS_2                          40                            46
  CLUS_3                          37                            34
  CLUS_4                          19                            52
  CLUS_5                          35                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6P21.1) MUTATED       22     15     52     41     28
  AMP PEAK 10(6P21.1) WILD-TYPE     32     41     62     43     28
D10V4, multiclass
        clus
vv       AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE
  CLUS_1                          22                            32
  CLUS_2                          15                            41
  CLUS_3                          52                            62
  CLUS_4                          41                            43
  CLUS_5                          28                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(6P21.1) MUTATED       24     24     30     39     23     16
  AMP PEAK 10(6P21.1) WILD-TYPE     16     39     62     45     23     24
D10V5, multiclass
        clus
vv       AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE
  CLUS_1                          24                            16
  CLUS_2                          24                            39
  CLUS_3                          30                            62
  CLUS_4                          39                            45
  CLUS_5                          23                            23
  CLUS_6                          16                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6P21.1) MUTATED       24     33     23     49     27
  AMP PEAK 10(6P21.1) WILD-TYPE     20     62     33     73     21
D10V6, multiclass
        clus
vv       AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE
  CLUS_1                          24                            20
  CLUS_2                          33                            62
  CLUS_3                          23                            33
  CLUS_4                          49                            73
  CLUS_5                          27                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P21.1) MUTATED       40     29     47     26
  AMP PEAK 10(6P21.1) WILD-TYPE     67     52     55     24
D10V7, multiclass
        clus
vv       AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE
  CLUS_1                          40                            67
  CLUS_2                          29                            52
  CLUS_3                          47                            55
  CLUS_4                          26                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6P21.1) MUTATED       30     29     42     18     23
  AMP PEAK 10(6P21.1) WILD-TYPE     40     53     58     16     31
D10V8, multiclass
        clus
vv       AMP PEAK 10(6P21.1) MUTATED AMP PEAK 10(6P21.1) WILD-TYPE
  CLUS_1                          30                            40
  CLUS_2                          29                            53
  CLUS_3                          42                            58
  CLUS_4                          18                            16
  CLUS_5                          23                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(6Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(6Q12) MUTATED        9     62     38
  AMP PEAK 11(6Q12) WILD-TYPE     84     89     88
D11V1, multiclass
        clus
vv       AMP PEAK 11(6Q12) MUTATED AMP PEAK 11(6Q12) WILD-TYPE
  CLUS_1                         9                          84
  CLUS_2                        62                          89
  CLUS_3                        38                          88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(6Q12) MUTATED       18     52     39
  AMP PEAK 11(6Q12) WILD-TYPE     75    109     77
D11V2, multiclass
        clus
vv       AMP PEAK 11(6Q12) MUTATED AMP PEAK 11(6Q12) WILD-TYPE
  CLUS_1                        18                          75
  CLUS_2                        52                         109
  CLUS_3                        39                          77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(6Q12) MUTATED       24     22     30     14     19
  AMP PEAK 11(6Q12) WILD-TYPE     43     64     41     57     50
D11V3, multiclass
        clus
vv       AMP PEAK 11(6Q12) MUTATED AMP PEAK 11(6Q12) WILD-TYPE
  CLUS_1                        24                          43
  CLUS_2                        22                          64
  CLUS_3                        30                          41
  CLUS_4                        14                          57
  CLUS_5                        19                          50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(6Q12) MUTATED       20     13     29     33     14
  AMP PEAK 11(6Q12) WILD-TYPE     34     43     85     51     42
D11V4, multiclass
        clus
vv       AMP PEAK 11(6Q12) MUTATED AMP PEAK 11(6Q12) WILD-TYPE
  CLUS_1                        20                          34
  CLUS_2                        13                          43
  CLUS_3                        29                          85
  CLUS_4                        33                          51
  CLUS_5                        14                          42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(6Q12) MUTATED       17     18     18     22     18     15
  AMP PEAK 11(6Q12) WILD-TYPE     23     45     74     62     28     25
D11V5, multiclass
        clus
vv       AMP PEAK 11(6Q12) MUTATED AMP PEAK 11(6Q12) WILD-TYPE
  CLUS_1                        17                          23
  CLUS_2                        18                          45
  CLUS_3                        18                          74
  CLUS_4                        22                          62
  CLUS_5                        18                          28
  CLUS_6                        15                          25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(6Q12) MUTATED       17     25     15     38     13
  AMP PEAK 11(6Q12) WILD-TYPE     27     70     41     84     35
D11V6, multiclass
        clus
vv       AMP PEAK 11(6Q12) MUTATED AMP PEAK 11(6Q12) WILD-TYPE
  CLUS_1                        17                          27
  CLUS_2                        25                          70
  CLUS_3                        15                          41
  CLUS_4                        38                          84
  CLUS_5                        13                          35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(6Q12) MUTATED       35     22     24     19
  AMP PEAK 11(6Q12) WILD-TYPE     72     59     78     31
D11V7, multiclass
        clus
vv       AMP PEAK 11(6Q12) MUTATED AMP PEAK 11(6Q12) WILD-TYPE
  CLUS_1                        35                          72
  CLUS_2                        22                          59
  CLUS_3                        24                          78
  CLUS_4                        19                          31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(6Q12) MUTATED       25     23     31     12      9
  AMP PEAK 11(6Q12) WILD-TYPE     45     59     69     22     45
D11V8, multiclass
        clus
vv       AMP PEAK 11(6Q12) MUTATED AMP PEAK 11(6Q12) WILD-TYPE
  CLUS_1                        25                          45
  CLUS_2                        23                          59
  CLUS_3                        31                          69
  CLUS_4                        12                          22
  CLUS_5                         9                          45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(6Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(6Q12) MUTATED        5     47     31
  AMP PEAK 12(6Q12) WILD-TYPE     88    104     95
D12V1, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                         5                          88
  CLUS_2                        47                         104
  CLUS_3                        31                          95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(6Q12) MUTATED       11     38     34
  AMP PEAK 12(6Q12) WILD-TYPE     82    123     82
D12V2, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        11                          82
  CLUS_2                        38                         123
  CLUS_3                        34                          82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(6Q12) MUTATED       17     12     27     13     14
  AMP PEAK 12(6Q12) WILD-TYPE     50     74     44     58     55
D12V3, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        17                          50
  CLUS_2                        12                          74
  CLUS_3                        27                          44
  CLUS_4                        13                          58
  CLUS_5                        14                          55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(6Q12) MUTATED       15     10     17     30     11
  AMP PEAK 12(6Q12) WILD-TYPE     39     46     97     54     45
D12V4, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        15                          39
  CLUS_2                        10                          46
  CLUS_3                        17                          97
  CLUS_4                        30                          54
  CLUS_5                        11                          45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(6Q12) MUTATED       12     13     16     17     15     10
  AMP PEAK 12(6Q12) WILD-TYPE     28     50     76     67     31     30
D12V5, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        12                          28
  CLUS_2                        13                          50
  CLUS_3                        16                          76
  CLUS_4                        17                          67
  CLUS_5                        15                          31
  CLUS_6                        10                          30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(6Q12) MUTATED       12     17     15     30      9
  AMP PEAK 12(6Q12) WILD-TYPE     32     78     41     92     39
D12V6, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        12                          32
  CLUS_2                        17                          78
  CLUS_3                        15                          41
  CLUS_4                        30                          92
  CLUS_5                         9                          39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(6Q12) MUTATED       26     18     16     17
  AMP PEAK 12(6Q12) WILD-TYPE     81     63     86     33
D12V7, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        26                          81
  CLUS_2                        18                          63
  CLUS_3                        16                          86
  CLUS_4                        17                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(6Q12) MUTATED       22     14     25      9      7
  AMP PEAK 12(6Q12) WILD-TYPE     48     68     75     25     47
D12V8, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        22                          48
  CLUS_2                        14                          68
  CLUS_3                        25                          75
  CLUS_4                         9                          25
  CLUS_5                         7                          47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7Q31.2) MUTATED       24     55     41
  AMP PEAK 13(7Q31.2) WILD-TYPE     69     96     85
D13V1, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                          24                            69
  CLUS_2                          55                            96
  CLUS_3                          41                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7Q31.2) MUTATED       24     67     29
  AMP PEAK 13(7Q31.2) WILD-TYPE     69     94     87
D13V2, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                          24                            69
  CLUS_2                          67                            94
  CLUS_3                          29                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7Q31.2) MUTATED       25     31     21     19     23
  AMP PEAK 13(7Q31.2) WILD-TYPE     42     55     50     52     46
D13V3, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                          25                            42
  CLUS_2                          31                            55
  CLUS_3                          21                            50
  CLUS_4                          19                            52
  CLUS_5                          23                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7Q31.2) MUTATED       19     18     38     24     20
  AMP PEAK 13(7Q31.2) WILD-TYPE     35     38     76     60     36
D13V4, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                          19                            35
  CLUS_2                          18                            38
  CLUS_3                          38                            76
  CLUS_4                          24                            60
  CLUS_5                          20                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(7Q31.2) MUTATED       12     21     23     30     12     19
  AMP PEAK 13(7Q31.2) WILD-TYPE     28     42     69     54     34     21
D13V5, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                          12                            28
  CLUS_2                          21                            42
  CLUS_3                          23                            69
  CLUS_4                          30                            54
  CLUS_5                          12                            34
  CLUS_6                          19                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7Q31.2) MUTATED       12     33     22     33     17
  AMP PEAK 13(7Q31.2) WILD-TYPE     32     62     34     89     31
D13V6, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                          12                            32
  CLUS_2                          33                            62
  CLUS_3                          22                            34
  CLUS_4                          33                            89
  CLUS_5                          17                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7Q31.2) MUTATED       35     25     33     12
  AMP PEAK 13(7Q31.2) WILD-TYPE     72     56     69     38
D13V7, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                          35                            72
  CLUS_2                          25                            56
  CLUS_3                          33                            69
  CLUS_4                          12                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7Q31.2) MUTATED       26     23     28      9     19
  AMP PEAK 13(7Q31.2) WILD-TYPE     44     59     72     25     35
D13V8, multiclass
        clus
vv       AMP PEAK 13(7Q31.2) MUTATED AMP PEAK 13(7Q31.2) WILD-TYPE
  CLUS_1                          26                            44
  CLUS_2                          23                            59
  CLUS_3                          28                            72
  CLUS_4                           9                            25
  CLUS_5                          19                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8Q24.21) MUTATED       45     79    107
  AMP PEAK 14(8Q24.21) WILD-TYPE     48     72     19
D14V1, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           45                             48
  CLUS_2                           79                             72
  CLUS_3                          107                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8Q24.21) MUTATED       55     93     83
  AMP PEAK 14(8Q24.21) WILD-TYPE     38     68     33
D14V2, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           55                             38
  CLUS_2                           93                             68
  CLUS_3                           83                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8Q24.21) MUTATED       44     36     50     47     49
  AMP PEAK 14(8Q24.21) WILD-TYPE     23     50     21     24     20
D14V3, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           44                             23
  CLUS_2                           36                             50
  CLUS_3                           50                             21
  CLUS_4                           47                             24
  CLUS_5                           49                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8Q24.21) MUTATED       39     40     45     61     41
  AMP PEAK 14(8Q24.21) WILD-TYPE     15     16     69     23     15
D14V4, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           39                             15
  CLUS_2                           40                             16
  CLUS_3                           45                             69
  CLUS_4                           61                             23
  CLUS_5                           41                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(8Q24.21) MUTATED       22     31     56     57     31     30
  AMP PEAK 14(8Q24.21) WILD-TYPE     18     32     36     27     15     10
D14V5, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           22                             18
  CLUS_2                           31                             32
  CLUS_3                           56                             36
  CLUS_4                           57                             27
  CLUS_5                           31                             15
  CLUS_6                           30                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8Q24.21) MUTATED       24     46     37     85     35
  AMP PEAK 14(8Q24.21) WILD-TYPE     20     49     19     37     13
D14V6, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           24                             20
  CLUS_2                           46                             49
  CLUS_3                           37                             19
  CLUS_4                           85                             37
  CLUS_5                           35                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(8Q24.21) MUTATED       72     53     58     34
  AMP PEAK 14(8Q24.21) WILD-TYPE     35     28     44     16
D14V7, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           72                             35
  CLUS_2                           53                             28
  CLUS_3                           58                             44
  CLUS_4                           34                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8Q24.21) MUTATED       52     36     70     18     41
  AMP PEAK 14(8Q24.21) WILD-TYPE     18     46     30     16     13
D14V8, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           52                             18
  CLUS_2                           36                             46
  CLUS_3                           70                             30
  CLUS_4                           18                             16
  CLUS_5                           41                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(9Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(9Q34.2) MUTATED        5     25     17
  AMP PEAK 15(9Q34.2) WILD-TYPE     88    126    109
D15V1, multiclass
        clus
vv       AMP PEAK 15(9Q34.2) MUTATED AMP PEAK 15(9Q34.2) WILD-TYPE
  CLUS_1                           5                            88
  CLUS_2                          25                           126
  CLUS_3                          17                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(9Q34.2) MUTATED       10     25     12
  AMP PEAK 15(9Q34.2) WILD-TYPE     83    136    104
D15V2, multiclass
        clus
vv       AMP PEAK 15(9Q34.2) MUTATED AMP PEAK 15(9Q34.2) WILD-TYPE
  CLUS_1                          10                            83
  CLUS_2                          25                           136
  CLUS_3                          12                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(9Q34.2) MUTATED       11     15     12      5      3
  AMP PEAK 15(9Q34.2) WILD-TYPE     56     71     59     66     66
D15V3, multiclass
        clus
vv       AMP PEAK 15(9Q34.2) MUTATED AMP PEAK 15(9Q34.2) WILD-TYPE
  CLUS_1                          11                            56
  CLUS_2                          15                            71
  CLUS_3                          12                            59
  CLUS_4                           5                            66
  CLUS_5                           3                            66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(9Q34.2) MUTATED       10      5     17     12      2
  AMP PEAK 15(9Q34.2) WILD-TYPE     44     51     97     72     54
D15V4, multiclass
        clus
vv       AMP PEAK 15(9Q34.2) MUTATED AMP PEAK 15(9Q34.2) WILD-TYPE
  CLUS_1                          10                            44
  CLUS_2                           5                            51
  CLUS_3                          17                            97
  CLUS_4                          12                            72
  CLUS_5                           2                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(9Q34.2) MUTATED        8     11     10      8      3      7
  AMP PEAK 15(9Q34.2) WILD-TYPE     32     52     82     76     43     33
D15V5, multiclass
        clus
vv       AMP PEAK 15(9Q34.2) MUTATED AMP PEAK 15(9Q34.2) WILD-TYPE
  CLUS_1                           8                            32
  CLUS_2                          11                            52
  CLUS_3                          10                            82
  CLUS_4                           8                            76
  CLUS_5                           3                            43
  CLUS_6                           7                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(9Q34.2) MUTATED       11     15      9     10      2
  AMP PEAK 15(9Q34.2) WILD-TYPE     33     80     47    112     46
D15V6, multiclass
        clus
vv       AMP PEAK 15(9Q34.2) MUTATED AMP PEAK 15(9Q34.2) WILD-TYPE
  CLUS_1                          11                            33
  CLUS_2                          15                            80
  CLUS_3                           9                            47
  CLUS_4                          10                           112
  CLUS_5                           2                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(9Q34.2) MUTATED       19     10     10      6
  AMP PEAK 15(9Q34.2) WILD-TYPE     88     71     92     44
D15V7, multiclass
        clus
vv       AMP PEAK 15(9Q34.2) MUTATED AMP PEAK 15(9Q34.2) WILD-TYPE
  CLUS_1                          19                            88
  CLUS_2                          10                            71
  CLUS_3                          10                            92
  CLUS_4                           6                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(9Q34.2) MUTATED       12     17      9      5      2
  AMP PEAK 15(9Q34.2) WILD-TYPE     58     65     91     29     52
D15V8, multiclass
        clus
vv       AMP PEAK 15(9Q34.2) MUTATED AMP PEAK 15(9Q34.2) WILD-TYPE
  CLUS_1                          12                            58
  CLUS_2                          17                            65
  CLUS_3                           9                            91
  CLUS_4                           5                            29
  CLUS_5                           2                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(10P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(10P15.1) MUTATED        8     38     26
  AMP PEAK 16(10P15.1) WILD-TYPE     85    113    100
D16V1, multiclass
        clus
vv       AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                            8                             85
  CLUS_2                           38                            113
  CLUS_3                           26                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(10P15.1) MUTATED       18     30     24
  AMP PEAK 16(10P15.1) WILD-TYPE     75    131     92
D16V2, multiclass
        clus
vv       AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                           18                             75
  CLUS_2                           30                            131
  CLUS_3                           24                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(10P15.1) MUTATED       20     10     18     11     12
  AMP PEAK 16(10P15.1) WILD-TYPE     47     76     53     60     57
D16V3, multiclass
        clus
vv       AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                           20                             47
  CLUS_2                           10                             76
  CLUS_3                           18                             53
  CLUS_4                           11                             60
  CLUS_5                           12                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(10P15.1) MUTATED       19      8     14     22      8
  AMP PEAK 16(10P15.1) WILD-TYPE     35     48    100     62     48
D16V4, multiclass
        clus
vv       AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                           19                             35
  CLUS_2                            8                             48
  CLUS_3                           14                            100
  CLUS_4                           22                             62
  CLUS_5                            8                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(10P15.1) MUTATED        8     13     17     13      8     13
  AMP PEAK 16(10P15.1) WILD-TYPE     32     50     75     71     38     27
D16V5, multiclass
        clus
vv       AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                            8                             32
  CLUS_2                           13                             50
  CLUS_3                           17                             75
  CLUS_4                           13                             71
  CLUS_5                            8                             38
  CLUS_6                           13                             27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(10P15.1) MUTATED        9     23     14     21      5
  AMP PEAK 16(10P15.1) WILD-TYPE     35     72     42    101     43
D16V6, multiclass
        clus
vv       AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           23                             72
  CLUS_3                           14                             42
  CLUS_4                           21                            101
  CLUS_5                            5                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(10P15.1) MUTATED       30     18     10     10
  AMP PEAK 16(10P15.1) WILD-TYPE     77     63     92     40
D16V7, multiclass
        clus
vv       AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                           30                             77
  CLUS_2                           18                             63
  CLUS_3                           10                             92
  CLUS_4                           10                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(10P15.1) MUTATED       22     11     20      9      6
  AMP PEAK 16(10P15.1) WILD-TYPE     48     71     80     25     48
D16V8, multiclass
        clus
vv       AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                           22                             48
  CLUS_2                           11                             71
  CLUS_3                           20                             80
  CLUS_4                            9                             25
  CLUS_5                            6                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q13.3) MUTATED       14     31     12
  AMP PEAK 17(11Q13.3) WILD-TYPE     79    120    114
D17V1, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           14                             79
  CLUS_2                           31                            120
  CLUS_3                           12                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q13.3) MUTATED       13     29     15
  AMP PEAK 17(11Q13.3) WILD-TYPE     80    132    101
D17V2, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           13                             80
  CLUS_2                           29                            132
  CLUS_3                           15                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q13.3) MUTATED       17     18     10      6      4
  AMP PEAK 17(11Q13.3) WILD-TYPE     50     68     61     65     65
D17V3, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           17                             50
  CLUS_2                           18                             68
  CLUS_3                           10                             61
  CLUS_4                            6                             65
  CLUS_5                            4                             65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q13.3) MUTATED       10      7     25     11      2
  AMP PEAK 17(11Q13.3) WILD-TYPE     44     49     89     73     54
D17V4, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                            7                             49
  CLUS_3                           25                             89
  CLUS_4                           11                             73
  CLUS_5                            2                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(11Q13.3) MUTATED       10     16     13      5      6      7
  AMP PEAK 17(11Q13.3) WILD-TYPE     30     47     79     79     40     33
D17V5, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           10                             30
  CLUS_2                           16                             47
  CLUS_3                           13                             79
  CLUS_4                            5                             79
  CLUS_5                            6                             40
  CLUS_6                            7                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q13.3) MUTATED       11     23      5     16      2
  AMP PEAK 17(11Q13.3) WILD-TYPE     33     72     51    106     46
D17V6, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           11                             33
  CLUS_2                           23                             72
  CLUS_3                            5                             51
  CLUS_4                           16                            106
  CLUS_5                            2                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(11Q13.3) MUTATED       21     13     10     10
  AMP PEAK 17(11Q13.3) WILD-TYPE     86     68     92     40
D17V7, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           21                             86
  CLUS_2                           13                             68
  CLUS_3                           10                             92
  CLUS_4                           10                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q13.3) MUTATED       13     18     13     10      0
  AMP PEAK 17(11Q13.3) WILD-TYPE     57     64     87     24     54
D17V8, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           13                             57
  CLUS_2                           18                             64
  CLUS_3                           13                             87
  CLUS_4                           10                             24
  CLUS_5                            0                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(13Q32.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q32.3) MUTATED        1     42     24
  AMP PEAK 18(13Q32.3) WILD-TYPE     92    109    102
D18V1, multiclass
        clus
vv       AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE
  CLUS_1                            1                             92
  CLUS_2                           42                            109
  CLUS_3                           24                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q32.3) MUTATED       12     27     28
  AMP PEAK 18(13Q32.3) WILD-TYPE     81    134     88
D18V2, multiclass
        clus
vv       AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE
  CLUS_1                           12                             81
  CLUS_2                           27                            134
  CLUS_3                           28                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(13Q32.3) MUTATED       14     12     23      9      8
  AMP PEAK 18(13Q32.3) WILD-TYPE     53     74     48     62     61
D18V3, multiclass
        clus
vv       AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE
  CLUS_1                           14                             53
  CLUS_2                           12                             74
  CLUS_3                           23                             48
  CLUS_4                            9                             62
  CLUS_5                            8                             61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(13Q32.3) MUTATED       13      5     23     19      6
  AMP PEAK 18(13Q32.3) WILD-TYPE     41     51     91     65     50
D18V4, multiclass
        clus
vv       AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE
  CLUS_1                           13                             41
  CLUS_2                            5                             51
  CLUS_3                           23                             91
  CLUS_4                           19                             65
  CLUS_5                            6                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(13Q32.3) MUTATED       13     11     13      8     13      9
  AMP PEAK 18(13Q32.3) WILD-TYPE     27     52     79     76     33     31
D18V5, multiclass
        clus
vv       AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE
  CLUS_1                           13                             27
  CLUS_2                           11                             52
  CLUS_3                           13                             79
  CLUS_4                            8                             76
  CLUS_5                           13                             33
  CLUS_6                            9                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(13Q32.3) MUTATED       13     15     11     23      5
  AMP PEAK 18(13Q32.3) WILD-TYPE     31     80     45     99     43
D18V6, multiclass
        clus
vv       AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE
  CLUS_1                           13                             31
  CLUS_2                           15                             80
  CLUS_3                           11                             45
  CLUS_4                           23                             99
  CLUS_5                            5                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q32.3) MUTATED       29     12     10     12
  AMP PEAK 18(13Q32.3) WILD-TYPE     78     69     92     38
D18V7, multiclass
        clus
vv       AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE
  CLUS_1                           29                             78
  CLUS_2                           12                             69
  CLUS_3                           10                             92
  CLUS_4                           12                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(13Q32.3) MUTATED       18     13     18     10      4
  AMP PEAK 18(13Q32.3) WILD-TYPE     52     69     82     24     50
D18V8, multiclass
        clus
vv       AMP PEAK 18(13Q32.3) MUTATED AMP PEAK 18(13Q32.3) WILD-TYPE
  CLUS_1                           18                             52
  CLUS_2                           13                             69
  CLUS_3                           18                             82
  CLUS_4                           10                             24
  CLUS_5                            4                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(13Q33.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(13Q33.3) MUTATED        3     39     25
  AMP PEAK 19(13Q33.3) WILD-TYPE     90    112    101
D19V1, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                            3                             90
  CLUS_2                           39                            112
  CLUS_3                           25                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(13Q33.3) MUTATED       11     27     29
  AMP PEAK 19(13Q33.3) WILD-TYPE     82    134     87
D19V2, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                           11                             82
  CLUS_2                           27                            134
  CLUS_3                           29                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(13Q33.3) MUTATED       13     10     25      8     10
  AMP PEAK 19(13Q33.3) WILD-TYPE     54     76     46     63     59
D19V3, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                           13                             54
  CLUS_2                           10                             76
  CLUS_3                           25                             46
  CLUS_4                            8                             63
  CLUS_5                           10                             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(13Q33.3) MUTATED       11      6     20     21      8
  AMP PEAK 19(13Q33.3) WILD-TYPE     43     50     94     63     48
D19V4, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                           11                             43
  CLUS_2                            6                             50
  CLUS_3                           20                             94
  CLUS_4                           21                             63
  CLUS_5                            8                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(13Q33.3) MUTATED       12      8     14      9     15      9
  AMP PEAK 19(13Q33.3) WILD-TYPE     28     55     78     75     31     31
D19V5, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                           12                             28
  CLUS_2                            8                             55
  CLUS_3                           14                             78
  CLUS_4                            9                             75
  CLUS_5                           15                             31
  CLUS_6                            9                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(13Q33.3) MUTATED       13     13     10     25      6
  AMP PEAK 19(13Q33.3) WILD-TYPE     31     82     46     97     42
D19V6, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                           13                             31
  CLUS_2                           13                             82
  CLUS_3                           10                             46
  CLUS_4                           25                             97
  CLUS_5                            6                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(13Q33.3) MUTATED       28     12     10     13
  AMP PEAK 19(13Q33.3) WILD-TYPE     79     69     92     37
D19V7, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                           28                             79
  CLUS_2                           12                             69
  CLUS_3                           10                             92
  CLUS_4                           13                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(13Q33.3) MUTATED       17     12     19     10      5
  AMP PEAK 19(13Q33.3) WILD-TYPE     53     70     81     24     49
D19V8, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                           17                             53
  CLUS_2                           12                             70
  CLUS_3                           19                             81
  CLUS_4                           10                             24
  CLUS_5                            5                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(15Q26.3) MUTATED        7     26     21
  AMP PEAK 20(15Q26.3) WILD-TYPE     86    125    105
D20V1, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                            7                             86
  CLUS_2                           26                            125
  CLUS_3                           21                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(15Q26.3) MUTATED       10     27     17
  AMP PEAK 20(15Q26.3) WILD-TYPE     83    134     99
D20V2, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                           10                             83
  CLUS_2                           27                            134
  CLUS_3                           17                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(15Q26.3) MUTATED        8     15     18      7      5
  AMP PEAK 20(15Q26.3) WILD-TYPE     59     71     53     64     64
D20V3, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                           15                             71
  CLUS_3                           18                             53
  CLUS_4                            7                             64
  CLUS_5                            5                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(15Q26.3) MUTATED        9      7     17     18      2
  AMP PEAK 20(15Q26.3) WILD-TYPE     45     49     97     66     54
D20V4, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                            9                             45
  CLUS_2                            7                             49
  CLUS_3                           17                             97
  CLUS_4                           18                             66
  CLUS_5                            2                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(15Q26.3) MUTATED        7      8     10     11      7     10
  AMP PEAK 20(15Q26.3) WILD-TYPE     33     55     82     73     39     30
D20V5, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                            7                             33
  CLUS_2                            8                             55
  CLUS_3                           10                             82
  CLUS_4                           11                             73
  CLUS_5                            7                             39
  CLUS_6                           10                             30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(15Q26.3) MUTATED        8     13      9     21      2
  AMP PEAK 20(15Q26.3) WILD-TYPE     36     82     47    101     46
D20V6, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           13                             82
  CLUS_3                            9                             47
  CLUS_4                           21                            101
  CLUS_5                            2                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(15Q26.3) MUTATED       14     15     12      9
  AMP PEAK 20(15Q26.3) WILD-TYPE     93     66     90     41
D20V7, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                           14                             93
  CLUS_2                           15                             66
  CLUS_3                           12                             90
  CLUS_4                            9                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(15Q26.3) MUTATED       13     10     17      5      5
  AMP PEAK 20(15Q26.3) WILD-TYPE     57     72     83     29     49
D20V8, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                           13                             57
  CLUS_2                           10                             72
  CLUS_3                           17                             83
  CLUS_4                            5                             29
  CLUS_5                            5                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17P11.2) MUTATED        8     17     21
  AMP PEAK 21(17P11.2) WILD-TYPE     85    134    105
D21V1, multiclass
        clus
vv       AMP PEAK 21(17P11.2) MUTATED AMP PEAK 21(17P11.2) WILD-TYPE
  CLUS_1                            8                             85
  CLUS_2                           17                            134
  CLUS_3                           21                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17P11.2) MUTATED        5     23     18
  AMP PEAK 21(17P11.2) WILD-TYPE     88    138     98
D21V2, multiclass
        clus
vv       AMP PEAK 21(17P11.2) MUTATED AMP PEAK 21(17P11.2) WILD-TYPE
  CLUS_1                            5                             88
  CLUS_2                           23                            138
  CLUS_3                           18                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(17P11.2) MUTATED       10     12     11      5      7
  AMP PEAK 21(17P11.2) WILD-TYPE     57     74     60     66     62
D21V3, multiclass
        clus
vv       AMP PEAK 21(17P11.2) MUTATED AMP PEAK 21(17P11.2) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                           12                             74
  CLUS_3                           11                             60
  CLUS_4                            5                             66
  CLUS_5                            7                             62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(17P11.2) MUTATED        9      3     14     14      5
  AMP PEAK 21(17P11.2) WILD-TYPE     45     53    100     70     51
D21V4, multiclass
        clus
vv       AMP PEAK 21(17P11.2) MUTATED AMP PEAK 21(17P11.2) WILD-TYPE
  CLUS_1                            9                             45
  CLUS_2                            3                             53
  CLUS_3                           14                            100
  CLUS_4                           14                             70
  CLUS_5                            5                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(17P11.2) MUTATED        7     10      6     14      3      6
  AMP PEAK 21(17P11.2) WILD-TYPE     33     53     86     70     43     34
D21V5, multiclass
        clus
vv       AMP PEAK 21(17P11.2) MUTATED AMP PEAK 21(17P11.2) WILD-TYPE
  CLUS_1                            7                             33
  CLUS_2                           10                             53
  CLUS_3                            6                             86
  CLUS_4                           14                             70
  CLUS_5                            3                             43
  CLUS_6                            6                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(17P11.2) MUTATED        7     12     11     10      6
  AMP PEAK 21(17P11.2) WILD-TYPE     37     83     45    112     42
D21V6, multiclass
        clus
vv       AMP PEAK 21(17P11.2) MUTATED AMP PEAK 21(17P11.2) WILD-TYPE
  CLUS_1                            7                             37
  CLUS_2                           12                             83
  CLUS_3                           11                             45
  CLUS_4                           10                            112
  CLUS_5                            6                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(17P11.2) MUTATED       18      7     12      5
  AMP PEAK 21(17P11.2) WILD-TYPE     89     74     90     45
D21V7, multiclass
        clus
vv       AMP PEAK 21(17P11.2) MUTATED AMP PEAK 21(17P11.2) WILD-TYPE
  CLUS_1                           18                             89
  CLUS_2                            7                             74
  CLUS_3                           12                             90
  CLUS_4                            5                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(17P11.2) MUTATED       13      9      8      6      6
  AMP PEAK 21(17P11.2) WILD-TYPE     57     73     92     28     48
D21V8, multiclass
        clus
vv       AMP PEAK 21(17P11.2) MUTATED AMP PEAK 21(17P11.2) WILD-TYPE
  CLUS_1                           13                             57
  CLUS_2                            9                             73
  CLUS_3                            8                             92
  CLUS_4                            6                             28
  CLUS_5                            6                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q25.3) MUTATED       18     82     45
  AMP PEAK 22(17Q25.3) WILD-TYPE     75     69     81
D22V1, multiclass
        clus
vv       AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE
  CLUS_1                           18                             75
  CLUS_2                           82                             69
  CLUS_3                           45                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q25.3) MUTATED       29     74     42
  AMP PEAK 22(17Q25.3) WILD-TYPE     64     87     74
D22V2, multiclass
        clus
vv       AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE
  CLUS_1                           29                             64
  CLUS_2                           74                             87
  CLUS_3                           42                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(17Q25.3) MUTATED       34     36     24     17     31
  AMP PEAK 22(17Q25.3) WILD-TYPE     33     50     47     54     38
D22V3, multiclass
        clus
vv       AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE
  CLUS_1                           34                             33
  CLUS_2                           36                             50
  CLUS_3                           24                             47
  CLUS_4                           17                             54
  CLUS_5                           31                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(17Q25.3) MUTATED       28     12     49     29     24
  AMP PEAK 22(17Q25.3) WILD-TYPE     26     44     65     55     32
D22V4, multiclass
        clus
vv       AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE
  CLUS_1                           28                             26
  CLUS_2                           12                             44
  CLUS_3                           49                             65
  CLUS_4                           29                             55
  CLUS_5                           24                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(17Q25.3) MUTATED       22     30     29     38     10     15
  AMP PEAK 22(17Q25.3) WILD-TYPE     18     33     63     46     36     25
D22V5, multiclass
        clus
vv       AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE
  CLUS_1                           22                             18
  CLUS_2                           30                             33
  CLUS_3                           29                             63
  CLUS_4                           38                             46
  CLUS_5                           10                             36
  CLUS_6                           15                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(17Q25.3) MUTATED       26     40     24     32     22
  AMP PEAK 22(17Q25.3) WILD-TYPE     18     55     32     90     26
D22V6, multiclass
        clus
vv       AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE
  CLUS_1                           26                             18
  CLUS_2                           40                             55
  CLUS_3                           24                             32
  CLUS_4                           32                             90
  CLUS_5                           22                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(17Q25.3) MUTATED       52     26     43     15
  AMP PEAK 22(17Q25.3) WILD-TYPE     55     55     59     35
D22V7, multiclass
        clus
vv       AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE
  CLUS_1                           52                             55
  CLUS_2                           26                             55
  CLUS_3                           43                             59
  CLUS_4                           15                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(17Q25.3) MUTATED       33     35     26     18     24
  AMP PEAK 22(17Q25.3) WILD-TYPE     37     47     74     16     30
D22V8, multiclass
        clus
vv       AMP PEAK 22(17Q25.3) MUTATED AMP PEAK 22(17Q25.3) WILD-TYPE
  CLUS_1                           33                             37
  CLUS_2                           35                             47
  CLUS_3                           26                             74
  CLUS_4                           18                             16
  CLUS_5                           24                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(19P13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.12) MUTATED       10     26     33
  AMP PEAK 23(19P13.12) WILD-TYPE     83    125     93
D23V1, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                            10                              83
  CLUS_2                            26                             125
  CLUS_3                            33                              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.12) MUTATED       16     19     34
  AMP PEAK 23(19P13.12) WILD-TYPE     77    142     82
D23V2, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                            16                              77
  CLUS_2                            19                             142
  CLUS_3                            34                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(19P13.12) MUTATED       15     10     20     19      4
  AMP PEAK 23(19P13.12) WILD-TYPE     52     76     51     52     65
D23V3, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                            15                              52
  CLUS_2                            10                              76
  CLUS_3                            20                              51
  CLUS_4                            19                              52
  CLUS_5                             4                              65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(19P13.12) MUTATED       16     13     12     23      4
  AMP PEAK 23(19P13.12) WILD-TYPE     38     43    102     61     52
D23V4, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                            16                              38
  CLUS_2                            13                              43
  CLUS_3                            12                             102
  CLUS_4                            23                              61
  CLUS_5                             4                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(19P13.12) MUTATED        4      8     23      9      9     15
  AMP PEAK 23(19P13.12) WILD-TYPE     36     55     69     75     37     25
D23V5, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                             4                              36
  CLUS_2                             8                              55
  CLUS_3                            23                              69
  CLUS_4                             9                              75
  CLUS_5                             9                              37
  CLUS_6                            15                              25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(19P13.12) MUTATED        3     20     14     29      2
  AMP PEAK 23(19P13.12) WILD-TYPE     41     75     42     93     46
D23V6, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                             3                              41
  CLUS_2                            20                              75
  CLUS_3                            14                              42
  CLUS_4                            29                              93
  CLUS_5                             2                              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(19P13.12) MUTATED       24     22      8     10
  AMP PEAK 23(19P13.12) WILD-TYPE     83     59     94     40
D23V7, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                            24                              83
  CLUS_2                            22                              59
  CLUS_3                             8                              94
  CLUS_4                            10                              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(19P13.12) MUTATED       18     14     27      2      3
  AMP PEAK 23(19P13.12) WILD-TYPE     52     68     73     32     51
D23V8, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                            18                              52
  CLUS_2                            14                              68
  CLUS_3                            27                              73
  CLUS_4                             2                              32
  CLUS_5                             3                              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(19Q13.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19Q13.11) MUTATED       14     47     30
  AMP PEAK 24(19Q13.11) WILD-TYPE     79    104     96
D24V1, multiclass
        clus
vv       AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE
  CLUS_1                            14                              79
  CLUS_2                            47                             104
  CLUS_3                            30                              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19Q13.11) MUTATED       25     31     35
  AMP PEAK 24(19Q13.11) WILD-TYPE     68    130     81
D24V2, multiclass
        clus
vv       AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE
  CLUS_1                            25                              68
  CLUS_2                            31                             130
  CLUS_3                            35                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(19Q13.11) MUTATED       22     16     25     21      6
  AMP PEAK 24(19Q13.11) WILD-TYPE     45     70     46     50     63
D24V3, multiclass
        clus
vv       AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE
  CLUS_1                            22                              45
  CLUS_2                            16                              70
  CLUS_3                            25                              46
  CLUS_4                            21                              50
  CLUS_5                             6                              63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(19Q13.11) MUTATED       16     17     21     31      5
  AMP PEAK 24(19Q13.11) WILD-TYPE     38     39     93     53     51
D24V4, multiclass
        clus
vv       AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE
  CLUS_1                            16                              38
  CLUS_2                            17                              39
  CLUS_3                            21                              93
  CLUS_4                            31                              53
  CLUS_5                             5                              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(19Q13.11) MUTATED       12     15     28     10     12     13
  AMP PEAK 24(19Q13.11) WILD-TYPE     28     48     64     74     34     27
D24V5, multiclass
        clus
vv       AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE
  CLUS_1                            12                              28
  CLUS_2                            15                              48
  CLUS_3                            28                              64
  CLUS_4                            10                              74
  CLUS_5                            12                              34
  CLUS_6                            13                              27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(19Q13.11) MUTATED       14     23     18     33      2
  AMP PEAK 24(19Q13.11) WILD-TYPE     30     72     38     89     46
D24V6, multiclass
        clus
vv       AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE
  CLUS_1                            14                              30
  CLUS_2                            23                              72
  CLUS_3                            18                              38
  CLUS_4                            33                              89
  CLUS_5                             2                              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(19Q13.11) MUTATED       36     23      7     19
  AMP PEAK 24(19Q13.11) WILD-TYPE     71     58     95     31
D24V7, multiclass
        clus
vv       AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE
  CLUS_1                            36                              71
  CLUS_2                            23                              58
  CLUS_3                             7                              95
  CLUS_4                            19                              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(19Q13.11) MUTATED       24     20     29     10      2
  AMP PEAK 24(19Q13.11) WILD-TYPE     46     62     71     24     52
D24V8, multiclass
        clus
vv       AMP PEAK 24(19Q13.11) MUTATED AMP PEAK 24(19Q13.11) WILD-TYPE
  CLUS_1                            24                              46
  CLUS_2                            20                              62
  CLUS_3                            29                              71
  CLUS_4                            10                              24
  CLUS_5                             2                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(20Q13.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q13.13) MUTATED       11     69     44
  AMP PEAK 25(20Q13.13) WILD-TYPE     82     82     82
D25V1, multiclass
        clus
vv       AMP PEAK 25(20Q13.13) MUTATED AMP PEAK 25(20Q13.13) WILD-TYPE
  CLUS_1                            11                              82
  CLUS_2                            69                              82
  CLUS_3                            44                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q13.13) MUTATED       27     56     41
  AMP PEAK 25(20Q13.13) WILD-TYPE     66    105     75
D25V2, multiclass
        clus
vv       AMP PEAK 25(20Q13.13) MUTATED AMP PEAK 25(20Q13.13) WILD-TYPE
  CLUS_1                            27                              66
  CLUS_2                            56                             105
  CLUS_3                            41                              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(20Q13.13) MUTATED       26     29     32     23     13
  AMP PEAK 25(20Q13.13) WILD-TYPE     41     57     39     48     56
D25V3, multiclass
        clus
vv       AMP PEAK 25(20Q13.13) MUTATED AMP PEAK 25(20Q13.13) WILD-TYPE
  CLUS_1                            26                              41
  CLUS_2                            29                              57
  CLUS_3                            32                              39
  CLUS_4                            23                              48
  CLUS_5                            13                              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(20Q13.13) MUTATED       19     19     37     41      7
  AMP PEAK 25(20Q13.13) WILD-TYPE     35     37     77     43     49
D25V4, multiclass
        clus
vv       AMP PEAK 25(20Q13.13) MUTATED AMP PEAK 25(20Q13.13) WILD-TYPE
  CLUS_1                            19                              35
  CLUS_2                            19                              37
  CLUS_3                            37                              77
  CLUS_4                            41                              43
  CLUS_5                             7                              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(20Q13.13) MUTATED       15     22     27     23     20     16
  AMP PEAK 25(20Q13.13) WILD-TYPE     25     41     65     61     26     24
D25V5, multiclass
        clus
vv       AMP PEAK 25(20Q13.13) MUTATED AMP PEAK 25(20Q13.13) WILD-TYPE
  CLUS_1                            15                              25
  CLUS_2                            22                              41
  CLUS_3                            27                              65
  CLUS_4                            23                              61
  CLUS_5                            20                              26
  CLUS_6                            16                              24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(20Q13.13) MUTATED       21     29     24     41      8
  AMP PEAK 25(20Q13.13) WILD-TYPE     23     66     32     81     40
D25V6, multiclass
        clus
vv       AMP PEAK 25(20Q13.13) MUTATED AMP PEAK 25(20Q13.13) WILD-TYPE
  CLUS_1                            21                              23
  CLUS_2                            29                              66
  CLUS_3                            24                              32
  CLUS_4                            41                              81
  CLUS_5                             8                              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(20Q13.13) MUTATED       45     25     19     27
  AMP PEAK 25(20Q13.13) WILD-TYPE     62     56     83     23
D25V7, multiclass
        clus
vv       AMP PEAK 25(20Q13.13) MUTATED AMP PEAK 25(20Q13.13) WILD-TYPE
  CLUS_1                            45                              62
  CLUS_2                            25                              56
  CLUS_3                            19                              83
  CLUS_4                            27                              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(20Q13.13) MUTATED       28     24     37     16     11
  AMP PEAK 25(20Q13.13) WILD-TYPE     42     58     63     18     43
D25V8, multiclass
        clus
vv       AMP PEAK 25(20Q13.13) MUTATED AMP PEAK 25(20Q13.13) WILD-TYPE
  CLUS_1                            28                              42
  CLUS_2                            24                              58
  CLUS_3                            37                              63
  CLUS_4                            16                              18
  CLUS_5                            11                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q13.33) MUTATED       10     69     49
  AMP PEAK 26(20Q13.33) WILD-TYPE     83     82     77
D26V1, multiclass
        clus
vv       AMP PEAK 26(20Q13.33) MUTATED AMP PEAK 26(20Q13.33) WILD-TYPE
  CLUS_1                            10                              83
  CLUS_2                            69                              82
  CLUS_3                            49                              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q13.33) MUTATED       25     57     46
  AMP PEAK 26(20Q13.33) WILD-TYPE     68    104     70
D26V2, multiclass
        clus
vv       AMP PEAK 26(20Q13.33) MUTATED AMP PEAK 26(20Q13.33) WILD-TYPE
  CLUS_1                            25                              68
  CLUS_2                            57                             104
  CLUS_3                            46                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(20Q13.33) MUTATED       25     30     36     22     14
  AMP PEAK 26(20Q13.33) WILD-TYPE     42     56     35     49     55
D26V3, multiclass
        clus
vv       AMP PEAK 26(20Q13.33) MUTATED AMP PEAK 26(20Q13.33) WILD-TYPE
  CLUS_1                            25                              42
  CLUS_2                            30                              56
  CLUS_3                            36                              35
  CLUS_4                            22                              49
  CLUS_5                            14                              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(20Q13.33) MUTATED       21     17     39     43      7
  AMP PEAK 26(20Q13.33) WILD-TYPE     33     39     75     41     49
D26V4, multiclass
        clus
vv       AMP PEAK 26(20Q13.33) MUTATED AMP PEAK 26(20Q13.33) WILD-TYPE
  CLUS_1                            21                              33
  CLUS_2                            17                              39
  CLUS_3                            39                              75
  CLUS_4                            43                              41
  CLUS_5                             7                              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(20Q13.33) MUTATED       15     25     26     24     21     16
  AMP PEAK 26(20Q13.33) WILD-TYPE     25     38     66     60     25     24
D26V5, multiclass
        clus
vv       AMP PEAK 26(20Q13.33) MUTATED AMP PEAK 26(20Q13.33) WILD-TYPE
  CLUS_1                            15                              25
  CLUS_2                            25                              38
  CLUS_3                            26                              66
  CLUS_4                            24                              60
  CLUS_5                            21                              25
  CLUS_6                            16                              24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(20Q13.33) MUTATED       20     32     23     43      9
  AMP PEAK 26(20Q13.33) WILD-TYPE     24     63     33     79     39
D26V6, multiclass
        clus
vv       AMP PEAK 26(20Q13.33) MUTATED AMP PEAK 26(20Q13.33) WILD-TYPE
  CLUS_1                            20                              24
  CLUS_2                            32                              63
  CLUS_3                            23                              33
  CLUS_4                            43                              79
  CLUS_5                             9                              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(20Q13.33) MUTATED       48     25     20     27
  AMP PEAK 26(20Q13.33) WILD-TYPE     59     56     82     23
D26V7, multiclass
        clus
vv       AMP PEAK 26(20Q13.33) MUTATED AMP PEAK 26(20Q13.33) WILD-TYPE
  CLUS_1                            48                              59
  CLUS_2                            25                              56
  CLUS_3                            20                              82
  CLUS_4                            27                              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(20Q13.33) MUTATED       28     26     39     15     12
  AMP PEAK 26(20Q13.33) WILD-TYPE     42     56     61     19     42
D26V8, multiclass
        clus
vv       AMP PEAK 26(20Q13.33) MUTATED AMP PEAK 26(20Q13.33) WILD-TYPE
  CLUS_1                            28                              42
  CLUS_2                            26                              56
  CLUS_3                            39                              61
  CLUS_4                            15                              19
  CLUS_5                            12                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ28) MUTATED       22     23     42
  AMP PEAK 27(XQ28) WILD-TYPE     71    128     84
D27V1, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                        22                          71
  CLUS_2                        23                         128
  CLUS_3                        42                          84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ28) MUTATED       14     46     27
  AMP PEAK 27(XQ28) WILD-TYPE     79    115     89
D27V2, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                        14                          79
  CLUS_2                        46                         115
  CLUS_3                        27                          89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(XQ28) MUTATED       14     22     12     12     26
  AMP PEAK 27(XQ28) WILD-TYPE     53     64     59     59     43
D27V3, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                        14                          53
  CLUS_2                        22                          64
  CLUS_3                        12                          59
  CLUS_4                        12                          59
  CLUS_5                        26                          43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(XQ28) MUTATED       13     11     29     11     22
  AMP PEAK 27(XQ28) WILD-TYPE     41     45     85     73     34
D27V4, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                        13                          41
  CLUS_2                        11                          45
  CLUS_3                        29                          85
  CLUS_4                        11                          73
  CLUS_5                        22                          34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(XQ28) MUTATED        4     17     15     35      5      9
  AMP PEAK 27(XQ28) WILD-TYPE     36     46     77     49     41     31
D27V5, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                         4                          36
  CLUS_2                        17                          46
  CLUS_3                        15                          77
  CLUS_4                        35                          49
  CLUS_5                         5                          41
  CLUS_6                         9                          31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(XQ28) MUTATED        5     23     14     22     21
  AMP PEAK 27(XQ28) WILD-TYPE     39     72     42    100     27
D27V6, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                         5                          39
  CLUS_2                        23                          72
  CLUS_3                        14                          42
  CLUS_4                        22                         100
  CLUS_5                        21                          27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(XQ28) MUTATED       23     15     34      6
  AMP PEAK 27(XQ28) WILD-TYPE     84     66     68     44
D27V7, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                        23                          84
  CLUS_2                        15                          66
  CLUS_3                        34                          68
  CLUS_4                         6                          44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(XQ28) MUTATED       16     19     17      2     24
  AMP PEAK 27(XQ28) WILD-TYPE     54     63     83     32     30
D27V8, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                        16                          54
  CLUS_2                        19                          63
  CLUS_3                        17                          83
  CLUS_4                         2                          32
  CLUS_5                        24                          30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       18     62     82
  DEL PEAK  1(1P36.31) WILD-TYPE     75     89     44
D28V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           18                             75
  CLUS_2                           62                             89
  CLUS_3                           82                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       28     61     73
  DEL PEAK  1(1P36.31) WILD-TYPE     65    100     43
D28V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           28                             65
  CLUS_2                           61                            100
  CLUS_3                           73                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED       17     33     59     32     18
  DEL PEAK  1(1P36.31) WILD-TYPE     50     53     12     39     51
D28V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           17                             50
  CLUS_2                           33                             53
  CLUS_3                           59                             12
  CLUS_4                           32                             39
  CLUS_5                           18                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED       24     24     40     57     14
  DEL PEAK  1(1P36.31) WILD-TYPE     30     32     74     27     42
D28V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           24                             30
  CLUS_2                           24                             32
  CLUS_3                           40                             74
  CLUS_4                           57                             27
  CLUS_5                           14                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED       12     26     39     30     23     29
  DEL PEAK  1(1P36.31) WILD-TYPE     28     37     53     54     23     11
D28V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           12                             28
  CLUS_2                           26                             37
  CLUS_3                           39                             53
  CLUS_4                           30                             54
  CLUS_5                           23                             23
  CLUS_6                           29                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED       14     37     31     65     12
  DEL PEAK  1(1P36.31) WILD-TYPE     30     58     25     57     36
D28V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           14                             30
  CLUS_2                           37                             58
  CLUS_3                           31                             25
  CLUS_4                           65                             57
  CLUS_5                           12                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       56     39     30     25
  DEL PEAK  1(1P36.31) WILD-TYPE     51     42     72     25
D28V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           56                             51
  CLUS_2                           39                             42
  CLUS_3                           30                             72
  CLUS_4                           25                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED       33     34     57     11     15
  DEL PEAK  1(1P36.31) WILD-TYPE     37     48     43     23     39
D28V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           33                             37
  CLUS_2                           34                             48
  CLUS_3                           57                             43
  CLUS_4                           11                             23
  CLUS_5                           15                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  2(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       11     56     75
  DEL PEAK  2(1P36.11) WILD-TYPE     82     95     51
D29V1, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           11                             82
  CLUS_2                           56                             95
  CLUS_3                           75                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       24     48     70
  DEL PEAK  2(1P36.11) WILD-TYPE     69    113     46
D29V2, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           24                             69
  CLUS_2                           48                            113
  CLUS_3                           70                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED       17     23     58     25     17
  DEL PEAK  2(1P36.11) WILD-TYPE     50     63     13     46     52
D29V3, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           17                             50
  CLUS_2                           23                             63
  CLUS_3                           58                             13
  CLUS_4                           25                             46
  CLUS_5                           17                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED       22     19     31     54     14
  DEL PEAK  2(1P36.11) WILD-TYPE     32     37     83     30     42
D29V4, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           22                             32
  CLUS_2                           19                             37
  CLUS_3                           31                             83
  CLUS_4                           54                             30
  CLUS_5                           14                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P36.11) MUTATED        8     18     33     28     25     27
  DEL PEAK  2(1P36.11) WILD-TYPE     32     45     59     56     21     13
D29V5, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            8                             32
  CLUS_2                           18                             45
  CLUS_3                           33                             59
  CLUS_4                           28                             56
  CLUS_5                           25                             21
  CLUS_6                           27                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED        9     30     25     64     11
  DEL PEAK  2(1P36.11) WILD-TYPE     35     65     31     58     37
D29V6, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           30                             65
  CLUS_3                           25                             31
  CLUS_4                           64                             58
  CLUS_5                           11                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED       52     34     23     23
  DEL PEAK  2(1P36.11) WILD-TYPE     55     47     79     27
D29V7, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           52                             55
  CLUS_2                           34                             47
  CLUS_3                           23                             79
  CLUS_4                           23                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED       30     26     55      7     14
  DEL PEAK  2(1P36.11) WILD-TYPE     40     56     45     27     40
D29V8, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           30                             40
  CLUS_2                           26                             56
  CLUS_3                           55                             45
  CLUS_4                            7                             27
  CLUS_5                           14                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  3(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        6     32     14
  DEL PEAK  3(2Q22.1) WILD-TYPE     87    119    112
D30V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           6                            87
  CLUS_2                          32                           119
  CLUS_3                          14                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        9     25     18
  DEL PEAK  3(2Q22.1) WILD-TYPE     84    136     98
D30V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           9                            84
  CLUS_2                          25                           136
  CLUS_3                          18                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED       14     16     13      7      2
  DEL PEAK  3(2Q22.1) WILD-TYPE     53     70     58     64     67
D30V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          14                            53
  CLUS_2                          16                            70
  CLUS_3                          13                            58
  CLUS_4                           7                            64
  CLUS_5                           2                            67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        8      7     22     13      2
  DEL PEAK  3(2Q22.1) WILD-TYPE     46     49     92     71     54
D30V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           8                            46
  CLUS_2                           7                            49
  CLUS_3                          22                            92
  CLUS_4                          13                            71
  CLUS_5                           2                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q22.1) MUTATED       10      8     10     10      5      8
  DEL PEAK  3(2Q22.1) WILD-TYPE     30     55     82     74     41     32
D30V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          10                            30
  CLUS_2                           8                            55
  CLUS_3                          10                            82
  CLUS_4                          10                            74
  CLUS_5                           5                            41
  CLUS_6                           8                            32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        9     13     12     13      4
  DEL PEAK  3(2Q22.1) WILD-TYPE     35     82     44    109     44
D30V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           9                            35
  CLUS_2                          13                            82
  CLUS_3                          12                            44
  CLUS_4                          13                           109
  CLUS_5                           4                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED       18     10     13      8
  DEL PEAK  3(2Q22.1) WILD-TYPE     89     71     89     42
D30V7, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          18                            89
  CLUS_2                          10                            71
  CLUS_3                          13                            89
  CLUS_4                           8                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED       14     10     12      9      4
  DEL PEAK  3(2Q22.1) WILD-TYPE     56     72     88     25     50
D30V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          14                            56
  CLUS_2                          10                            72
  CLUS_3                          12                            88
  CLUS_4                           9                            25
  CLUS_5                           4                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        5     39     18
  DEL PEAK  4(2Q37.3) WILD-TYPE     88    112    108
D31V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           5                            88
  CLUS_2                          39                           112
  CLUS_3                          18                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       13     26     23
  DEL PEAK  4(2Q37.3) WILD-TYPE     80    135     93
D31V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          13                            80
  CLUS_2                          26                           135
  CLUS_3                          23                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       18     22     14      8      0
  DEL PEAK  4(2Q37.3) WILD-TYPE     49     64     57     63     69
D31V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          18                            49
  CLUS_2                          22                            64
  CLUS_3                          14                            57
  CLUS_4                           8                            63
  CLUS_5                           0                            69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       12      9     28     12      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     42     47     86     72     55
D31V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          12                            42
  CLUS_2                           9                            47
  CLUS_3                          28                            86
  CLUS_4                          12                            72
  CLUS_5                           1                            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       13     12     12     10      5      9
  DEL PEAK  4(2Q37.3) WILD-TYPE     27     51     80     74     41     31
D31V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          13                            27
  CLUS_2                          12                            51
  CLUS_3                          12                            80
  CLUS_4                          10                            74
  CLUS_5                           5                            41
  CLUS_6                           9                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       11     16     16     15      3
  DEL PEAK  4(2Q37.3) WILD-TYPE     33     79     40    107     45
D31V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          11                            33
  CLUS_2                          16                            79
  CLUS_3                          16                            40
  CLUS_4                          15                           107
  CLUS_5                           3                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       24     11     14      9
  DEL PEAK  4(2Q37.3) WILD-TYPE     83     70     88     41
D31V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          24                            83
  CLUS_2                          11                            70
  CLUS_3                          14                            88
  CLUS_4                           9                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       21     14     10      9      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     49     68     90     25     50
D31V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          21                            49
  CLUS_2                          14                            68
  CLUS_3                          10                            90
  CLUS_4                           9                            25
  CLUS_5                           4                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  5(3P13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P13) MUTATED       11     33     29
  DEL PEAK  5(3P13) WILD-TYPE     82    118     97
D32V1, multiclass
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  CLUS_1                        11                          82
  CLUS_2                        33                         118
  CLUS_3                        29                          97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P13) MUTATED       20     21     32
  DEL PEAK  5(3P13) WILD-TYPE     73    140     84
D32V2, multiclass
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  CLUS_1                        20                          73
  CLUS_2                        21                         140
  CLUS_3                        32                          84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P13) MUTATED       13     10     26     18      5
  DEL PEAK  5(3P13) WILD-TYPE     54     76     45     53     64
D32V3, multiclass
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  CLUS_1                        13                          54
  CLUS_2                        10                          76
  CLUS_3                        26                          45
  CLUS_4                        18                          53
  CLUS_5                         5                          64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P13) MUTATED       23      5     15     24      5
  DEL PEAK  5(3P13) WILD-TYPE     31     51     99     60     51
D32V4, multiclass
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  CLUS_1                        23                          31
  CLUS_2                         5                          51
  CLUS_3                        15                          99
  CLUS_4                        24                          60
  CLUS_5                         5                          51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P13) MUTATED        5      8     20      9      9     20
  DEL PEAK  5(3P13) WILD-TYPE     35     55     72     75     37     20
D32V5, multiclass
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  CLUS_1                         5                          35
  CLUS_2                         8                          55
  CLUS_3                        20                          72
  CLUS_4                         9                          75
  CLUS_5                         9                          37
  CLUS_6                        20                          20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P13) MUTATED        5     17     12     33      4
  DEL PEAK  5(3P13) WILD-TYPE     39     78     44     89     44
D32V6, multiclass
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  CLUS_1                         5                          39
  CLUS_2                        17                          78
  CLUS_3                        12                          44
  CLUS_4                        33                          89
  CLUS_5                         4                          44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P13) MUTATED       29     19     10      9
  DEL PEAK  5(3P13) WILD-TYPE     78     62     92     41
D32V7, multiclass
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  CLUS_1                        29                          78
  CLUS_2                        19                          62
  CLUS_3                        10                          92
  CLUS_4                         9                          41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P13) MUTATED       20     12     28      3      4
  DEL PEAK  5(3P13) WILD-TYPE     50     70     72     31     50
D32V8, multiclass
        clus
vv       DEL PEAK  5(3P13) MUTATED DEL PEAK  5(3P13) WILD-TYPE
  CLUS_1                        20                          50
  CLUS_2                        12                          70
  CLUS_3                        28                          72
  CLUS_4                         3                          31
  CLUS_5                         4                          50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  6(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4P16.3) MUTATED        4     51     30
  DEL PEAK  6(4P16.3) WILD-TYPE     89    100     96
D33V1, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           4                            89
  CLUS_2                          51                           100
  CLUS_3                          30                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4P16.3) MUTATED       15     43     27
  DEL PEAK  6(4P16.3) WILD-TYPE     78    118     89
D33V2, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          15                            78
  CLUS_2                          43                           118
  CLUS_3                          27                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4P16.3) MUTATED       20     22     19     13      9
  DEL PEAK  6(4P16.3) WILD-TYPE     47     64     52     58     60
D33V3, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          20                            47
  CLUS_2                          22                            64
  CLUS_3                          19                            52
  CLUS_4                          13                            58
  CLUS_5                           9                            60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4P16.3) MUTATED       12      9     31     24      7
  DEL PEAK  6(4P16.3) WILD-TYPE     42     47     83     60     49
D33V4, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          12                            42
  CLUS_2                           9                            47
  CLUS_3                          31                            83
  CLUS_4                          24                            60
  CLUS_5                           7                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4P16.3) MUTATED        6     13     24     13     15     13
  DEL PEAK  6(4P16.3) WILD-TYPE     34     50     68     71     31     27
D33V5, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           6                            34
  CLUS_2                          13                            50
  CLUS_3                          24                            68
  CLUS_4                          13                            71
  CLUS_5                          15                            31
  CLUS_6                          13                            27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4P16.3) MUTATED        6     20     20     32      6
  DEL PEAK  6(4P16.3) WILD-TYPE     38     75     36     90     42
D33V6, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           6                            38
  CLUS_2                          20                            75
  CLUS_3                          20                            36
  CLUS_4                          32                            90
  CLUS_5                           6                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4P16.3) MUTATED       33     16     16     13
  DEL PEAK  6(4P16.3) WILD-TYPE     74     65     86     37
D33V7, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          33                            74
  CLUS_2                          16                            65
  CLUS_3                          16                            86
  CLUS_4                          13                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4P16.3) MUTATED       26     20     22      4      6
  DEL PEAK  6(4P16.3) WILD-TYPE     44     62     78     30     48
D33V8, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          26                            44
  CLUS_2                          20                            62
  CLUS_3                          22                            78
  CLUS_4                           4                            30
  CLUS_5                           6                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  7(4Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q21.3) MUTATED        7    108     56
  DEL PEAK  7(4Q21.3) WILD-TYPE     86     43     70
D34V1, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                           7                            86
  CLUS_2                         108                            43
  CLUS_3                          56                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q21.3) MUTATED       35     66     70
  DEL PEAK  7(4Q21.3) WILD-TYPE     58     95     46
D34V2, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          35                            58
  CLUS_2                          66                            95
  CLUS_3                          70                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q21.3) MUTATED       39     43     52     20     15
  DEL PEAK  7(4Q21.3) WILD-TYPE     28     43     19     51     54
D34V3, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          39                            28
  CLUS_2                          43                            43
  CLUS_3                          52                            19
  CLUS_4                          20                            51
  CLUS_5                          15                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q21.3) MUTATED       28     22     55     51     13
  DEL PEAK  7(4Q21.3) WILD-TYPE     26     34     59     33     43
D34V4, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          28                            26
  CLUS_2                          22                            34
  CLUS_3                          55                            59
  CLUS_4                          51                            33
  CLUS_5                          13                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q21.3) MUTATED       20     28     39     27     30     26
  DEL PEAK  7(4Q21.3) WILD-TYPE     20     35     53     57     16     14
D34V5, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          20                            20
  CLUS_2                          28                            35
  CLUS_3                          39                            53
  CLUS_4                          27                            57
  CLUS_5                          30                            16
  CLUS_6                          26                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q21.3) MUTATED       20     45     32     63     10
  DEL PEAK  7(4Q21.3) WILD-TYPE     24     50     24     59     38
D34V6, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          20                            24
  CLUS_2                          45                            50
  CLUS_3                          32                            24
  CLUS_4                          63                            59
  CLUS_5                          10                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q21.3) MUTATED       62     33     34     34
  DEL PEAK  7(4Q21.3) WILD-TYPE     45     48     68     16
D34V7, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          62                            45
  CLUS_2                          33                            48
  CLUS_3                          34                            68
  CLUS_4                          34                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q21.3) MUTATED       45     42     50     14     12
  DEL PEAK  7(4Q21.3) WILD-TYPE     25     40     50     20     42
D34V8, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          45                            25
  CLUS_2                          42                            40
  CLUS_3                          50                            50
  CLUS_4                          14                            20
  CLUS_5                          12                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  8(4Q24) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q24) MUTATED        5    111     57
  DEL PEAK  8(4Q24) WILD-TYPE     88     40     69
D35V1, multiclass
        clus
vv       DEL PEAK  8(4Q24) MUTATED DEL PEAK  8(4Q24) WILD-TYPE
  CLUS_1                         5                          88
  CLUS_2                       111                          40
  CLUS_3                        57                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q24) MUTATED       36     66     71
  DEL PEAK  8(4Q24) WILD-TYPE     57     95     45
D35V2, multiclass
        clus
vv       DEL PEAK  8(4Q24) MUTATED DEL PEAK  8(4Q24) WILD-TYPE
  CLUS_1                        36                          57
  CLUS_2                        66                          95
  CLUS_3                        71                          45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q24) MUTATED       38     43     52     22     15
  DEL PEAK  8(4Q24) WILD-TYPE     29     43     19     49     54
D35V3, multiclass
        clus
vv       DEL PEAK  8(4Q24) MUTATED DEL PEAK  8(4Q24) WILD-TYPE
  CLUS_1                        38                          29
  CLUS_2                        43                          43
  CLUS_3                        52                          19
  CLUS_4                        22                          49
  CLUS_5                        15                          54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q24) MUTATED       29     23     54     52     12
  DEL PEAK  8(4Q24) WILD-TYPE     25     33     60     32     44
D35V4, multiclass
        clus
vv       DEL PEAK  8(4Q24) MUTATED DEL PEAK  8(4Q24) WILD-TYPE
  CLUS_1                        29                          25
  CLUS_2                        23                          33
  CLUS_3                        54                          60
  CLUS_4                        52                          32
  CLUS_5                        12                          44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q24) MUTATED       21     27     40     28     30     26
  DEL PEAK  8(4Q24) WILD-TYPE     19     36     52     56     16     14
D35V5, multiclass
        clus
vv       DEL PEAK  8(4Q24) MUTATED DEL PEAK  8(4Q24) WILD-TYPE
  CLUS_1                        21                          19
  CLUS_2                        27                          36
  CLUS_3                        40                          52
  CLUS_4                        28                          56
  CLUS_5                        30                          16
  CLUS_6                        26                          14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q24) MUTATED       23     43     33     64      9
  DEL PEAK  8(4Q24) WILD-TYPE     21     52     23     58     39
D35V6, multiclass
        clus
vv       DEL PEAK  8(4Q24) MUTATED DEL PEAK  8(4Q24) WILD-TYPE
  CLUS_1                        23                          21
  CLUS_2                        43                          52
  CLUS_3                        33                          23
  CLUS_4                        64                          58
  CLUS_5                         9                          39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q24) MUTATED       61     34     34     36
  DEL PEAK  8(4Q24) WILD-TYPE     46     47     68     14
D35V7, multiclass
        clus
vv       DEL PEAK  8(4Q24) MUTATED DEL PEAK  8(4Q24) WILD-TYPE
  CLUS_1                        61                          46
  CLUS_2                        34                          47
  CLUS_3                        34                          68
  CLUS_4                        36                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q24) MUTATED       45     42     50     17     11
  DEL PEAK  8(4Q24) WILD-TYPE     25     40     50     17     43
D35V8, multiclass
        clus
vv       DEL PEAK  8(4Q24) MUTATED DEL PEAK  8(4Q24) WILD-TYPE
  CLUS_1                        45                          25
  CLUS_2                        42                          40
  CLUS_3                        50                          50
  CLUS_4                        17                          17
  CLUS_5                        11                          43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  9(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED        9    102     61
  DEL PEAK  9(4Q35.1) WILD-TYPE     84     49     65
D36V1, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                           9                            84
  CLUS_2                         102                            49
  CLUS_3                          61                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       33     68     71
  DEL PEAK  9(4Q35.1) WILD-TYPE     60     93     45
D36V2, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          33                            60
  CLUS_2                          68                            93
  CLUS_3                          71                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       39     39     50     21     20
  DEL PEAK  9(4Q35.1) WILD-TYPE     28     47     21     50     49
D36V3, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          39                            28
  CLUS_2                          39                            47
  CLUS_3                          50                            21
  CLUS_4                          21                            50
  CLUS_5                          20                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       28     22     48     54     17
  DEL PEAK  9(4Q35.1) WILD-TYPE     26     34     66     30     39
D36V4, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          28                            26
  CLUS_2                          22                            34
  CLUS_3                          48                            66
  CLUS_4                          54                            30
  CLUS_5                          17                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED       22     26     36     31     29     27
  DEL PEAK  9(4Q35.1) WILD-TYPE     18     37     56     53     17     13
D36V5, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          22                            18
  CLUS_2                          26                            37
  CLUS_3                          36                            56
  CLUS_4                          31                            53
  CLUS_5                          29                            17
  CLUS_6                          27                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       21     41     32     65     12
  DEL PEAK  9(4Q35.1) WILD-TYPE     23     54     24     57     36
D36V6, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          21                            23
  CLUS_2                          41                            54
  CLUS_3                          32                            24
  CLUS_4                          65                            57
  CLUS_5                          12                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q35.1) MUTATED       60     36     32     33
  DEL PEAK  9(4Q35.1) WILD-TYPE     47     45     70     17
D36V7, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          60                            47
  CLUS_2                          36                            45
  CLUS_3                          32                            70
  CLUS_4                          33                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       42     39     51     16     13
  DEL PEAK  9(4Q35.1) WILD-TYPE     28     43     49     18     41
D36V8, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          42                            28
  CLUS_2                          39                            43
  CLUS_3                          51                            49
  CLUS_4                          16                            18
  CLUS_5                          13                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 10(6Q27) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q27) MUTATED       20     64     52
  DEL PEAK 10(6Q27) WILD-TYPE     73     87     74
D37V1, multiclass
        clus
vv       DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE
  CLUS_1                        20                          73
  CLUS_2                        64                          87
  CLUS_3                        52                          74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q27) MUTATED       23     72     41
  DEL PEAK 10(6Q27) WILD-TYPE     70     89     75
D37V2, multiclass
        clus
vv       DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE
  CLUS_1                        23                          70
  CLUS_2                        72                          89
  CLUS_3                        41                          75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q27) MUTATED       19     35     28     24     28
  DEL PEAK 10(6Q27) WILD-TYPE     48     51     43     47     41
D37V3, multiclass
        clus
vv       DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE
  CLUS_1                        19                          48
  CLUS_2                        35                          51
  CLUS_3                        28                          43
  CLUS_4                        24                          47
  CLUS_5                        28                          41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q27) MUTATED       21     15     43     31     24
  DEL PEAK 10(6Q27) WILD-TYPE     33     41     71     53     32
D37V4, multiclass
        clus
vv       DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE
  CLUS_1                        21                          33
  CLUS_2                        15                          41
  CLUS_3                        43                          71
  CLUS_4                        31                          53
  CLUS_5                        24                          32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q27) MUTATED       19     20     23     35     15     20
  DEL PEAK 10(6Q27) WILD-TYPE     21     43     69     49     31     20
D37V5, multiclass
        clus
vv       DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE
  CLUS_1                        19                          21
  CLUS_2                        20                          43
  CLUS_3                        23                          69
  CLUS_4                        35                          49
  CLUS_5                        15                          31
  CLUS_6                        20                          20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q27) MUTATED       20     25     18     45     24
  DEL PEAK 10(6Q27) WILD-TYPE     24     70     38     77     24
D37V6, multiclass
        clus
vv       DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE
  CLUS_1                        20                          24
  CLUS_2                        25                          70
  CLUS_3                        18                          38
  CLUS_4                        45                          77
  CLUS_5                        24                          24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q27) MUTATED       35     30     41     15
  DEL PEAK 10(6Q27) WILD-TYPE     72     51     61     35
D37V7, multiclass
        clus
vv       DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE
  CLUS_1                        35                          72
  CLUS_2                        30                          51
  CLUS_3                        41                          61
  CLUS_4                        15                          35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q27) MUTATED       24     24     35     17     21
  DEL PEAK 10(6Q27) WILD-TYPE     46     58     65     17     33
D37V8, multiclass
        clus
vv       DEL PEAK 10(6Q27) MUTATED DEL PEAK 10(6Q27) WILD-TYPE
  CLUS_1                        24                          46
  CLUS_2                        24                          58
  CLUS_3                        35                          65
  CLUS_4                        17                          17
  CLUS_5                        21                          33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 11(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(7Q36.3) MUTATED        5     18     11
  DEL PEAK 11(7Q36.3) WILD-TYPE     88    133    115
D38V1, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           5                            88
  CLUS_2                          18                           133
  CLUS_3                          11                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(7Q36.3) MUTATED        8      9     17
  DEL PEAK 11(7Q36.3) WILD-TYPE     85    152     99
D38V2, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           8                            85
  CLUS_2                           9                           152
  CLUS_3                          17                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(7Q36.3) MUTATED       10      4     11      6      3
  DEL PEAK 11(7Q36.3) WILD-TYPE     57     82     60     65     66
D38V3, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          10                            57
  CLUS_2                           4                            82
  CLUS_3                          11                            60
  CLUS_4                           6                            65
  CLUS_5                           3                            66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(7Q36.3) MUTATED        9      2     10     10      3
  DEL PEAK 11(7Q36.3) WILD-TYPE     45     54    104     74     53
D38V4, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           9                            45
  CLUS_2                           2                            54
  CLUS_3                          10                           104
  CLUS_4                          10                            74
  CLUS_5                           3                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(7Q36.3) MUTATED        5      6      7      7      4      5
  DEL PEAK 11(7Q36.3) WILD-TYPE     35     57     85     77     42     35
D38V5, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           5                            35
  CLUS_2                           6                            57
  CLUS_3                           7                            85
  CLUS_4                           7                            77
  CLUS_5                           4                            42
  CLUS_6                           5                            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(7Q36.3) MUTATED        7     10      8      8      1
  DEL PEAK 11(7Q36.3) WILD-TYPE     37     85     48    114     47
D38V6, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           7                            37
  CLUS_2                          10                            85
  CLUS_3                           8                            48
  CLUS_4                           8                           114
  CLUS_5                           1                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(7Q36.3) MUTATED       19      5      2      7
  DEL PEAK 11(7Q36.3) WILD-TYPE     88     76    100     43
D38V7, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          19                            88
  CLUS_2                           5                            76
  CLUS_3                           2                           100
  CLUS_4                           7                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(7Q36.3) MUTATED       11      8      8      6      0
  DEL PEAK 11(7Q36.3) WILD-TYPE     59     74     92     28     54
D38V8, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          11                            59
  CLUS_2                           8                            74
  CLUS_3                           8                            92
  CLUS_4                           6                            28
  CLUS_5                           0                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 12(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P23.2) MUTATED       46     96    105
  DEL PEAK 12(8P23.2) WILD-TYPE     47     55     21
D39V1, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          46                            47
  CLUS_2                          96                            55
  CLUS_3                         105                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P23.2) MUTATED       54    113     80
  DEL PEAK 12(8P23.2) WILD-TYPE     39     48     36
D39V2, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          54                            39
  CLUS_2                         113                            48
  CLUS_3                          80                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(8P23.2) MUTATED       49     50     54     44     44
  DEL PEAK 12(8P23.2) WILD-TYPE     18     36     17     27     25
D39V3, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          49                            18
  CLUS_2                          50                            36
  CLUS_3                          54                            17
  CLUS_4                          44                            27
  CLUS_5                          44                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(8P23.2) MUTATED       36     41     70     57     37
  DEL PEAK 12(8P23.2) WILD-TYPE     18     15     44     27     19
D39V4, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          36                            18
  CLUS_2                          41                            15
  CLUS_3                          70                            44
  CLUS_4                          57                            27
  CLUS_5                          37                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(8P23.2) MUTATED       30     40     62     54     28     29
  DEL PEAK 12(8P23.2) WILD-TYPE     10     23     30     30     18     11
D39V5, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          30                            10
  CLUS_2                          40                            23
  CLUS_3                          62                            30
  CLUS_4                          54                            30
  CLUS_5                          28                            18
  CLUS_6                          29                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(8P23.2) MUTATED       32     56     40     78     37
  DEL PEAK 12(8P23.2) WILD-TYPE     12     39     16     44     11
D39V6, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          32                            12
  CLUS_2                          56                            39
  CLUS_3                          40                            16
  CLUS_4                          78                            44
  CLUS_5                          37                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P23.2) MUTATED       80     54     64     30
  DEL PEAK 12(8P23.2) WILD-TYPE     27     27     38     20
D39V7, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          80                            27
  CLUS_2                          54                            27
  CLUS_3                          64                            38
  CLUS_4                          30                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(8P23.2) MUTATED       55     50     61     26     36
  DEL PEAK 12(8P23.2) WILD-TYPE     15     32     39      8     18
D39V8, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          55                            15
  CLUS_2                          50                            32
  CLUS_3                          61                            39
  CLUS_4                          26                             8
  CLUS_5                          36                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 13(8P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P12) MUTATED       44     91    107
  DEL PEAK 13(8P12) WILD-TYPE     49     60     19
D40V1, multiclass
        clus
vv       DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE
  CLUS_1                        44                          49
  CLUS_2                        91                          60
  CLUS_3                       107                          19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P12) MUTATED       54    105     83
  DEL PEAK 13(8P12) WILD-TYPE     39     56     33
D40V2, multiclass
        clus
vv       DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE
  CLUS_1                        54                          39
  CLUS_2                       105                          56
  CLUS_3                        83                          33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(8P12) MUTATED       45     48     55     44     45
  DEL PEAK 13(8P12) WILD-TYPE     22     38     16     27     24
D40V3, multiclass
        clus
vv       DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE
  CLUS_1                        45                          22
  CLUS_2                        48                          38
  CLUS_3                        55                          16
  CLUS_4                        44                          27
  CLUS_5                        45                          24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(8P12) MUTATED       37     38     67     58     37
  DEL PEAK 13(8P12) WILD-TYPE     17     18     47     26     19
D40V4, multiclass
        clus
vv       DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE
  CLUS_1                        37                          17
  CLUS_2                        38                          18
  CLUS_3                        67                          47
  CLUS_4                        58                          26
  CLUS_5                        37                          19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(8P12) MUTATED       29     37     59     55     27     31
  DEL PEAK 13(8P12) WILD-TYPE     11     26     33     29     19      9
D40V5, multiclass
        clus
vv       DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE
  CLUS_1                        29                          11
  CLUS_2                        37                          26
  CLUS_3                        59                          33
  CLUS_4                        55                          29
  CLUS_5                        27                          19
  CLUS_6                        31                           9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(8P12) MUTATED       31     54     40     76     37
  DEL PEAK 13(8P12) WILD-TYPE     13     41     16     46     11
D40V6, multiclass
        clus
vv       DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE
  CLUS_1                        31                          13
  CLUS_2                        54                          41
  CLUS_3                        40                          16
  CLUS_4                        76                          46
  CLUS_5                        37                          11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P12) MUTATED       79     53     60     31
  DEL PEAK 13(8P12) WILD-TYPE     28     28     42     19
D40V7, multiclass
        clus
vv       DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE
  CLUS_1                        79                          28
  CLUS_2                        53                          28
  CLUS_3                        60                          42
  CLUS_4                        31                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(8P12) MUTATED       53     46     62     25     37
  DEL PEAK 13(8P12) WILD-TYPE     17     36     38      9     17
D40V8, multiclass
        clus
vv       DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE
  CLUS_1                        53                          17
  CLUS_2                        46                          36
  CLUS_3                        62                          38
  CLUS_4                        25                           9
  CLUS_5                        37                          17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 14(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       13     76     61
  DEL PEAK 14(9P21.3) WILD-TYPE     80     75     65
D41V1, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          13                            80
  CLUS_2                          76                            75
  CLUS_3                          61                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       34     57     59
  DEL PEAK 14(9P21.3) WILD-TYPE     59    104     57
D41V2, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          34                            59
  CLUS_2                          57                           104
  CLUS_3                          59                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(9P21.3) MUTATED       31     29     45     27     15
  DEL PEAK 14(9P21.3) WILD-TYPE     36     57     26     44     54
D41V3, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          31                            36
  CLUS_2                          29                            57
  CLUS_3                          45                            26
  CLUS_4                          27                            44
  CLUS_5                          15                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(9P21.3) MUTATED       28     20     38     46     15
  DEL PEAK 14(9P21.3) WILD-TYPE     26     36     76     38     41
D41V4, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          28                            26
  CLUS_2                          20                            36
  CLUS_3                          38                            76
  CLUS_4                          46                            38
  CLUS_5                          15                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9P21.3) MUTATED       20     16     35     26     31     21
  DEL PEAK 14(9P21.3) WILD-TYPE     20     47     57     58     15     19
D41V5, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          20                            20
  CLUS_2                          16                            47
  CLUS_3                          35                            57
  CLUS_4                          26                            58
  CLUS_5                          31                            15
  CLUS_6                          21                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(9P21.3) MUTATED       20     31     29     59     10
  DEL PEAK 14(9P21.3) WILD-TYPE     24     64     27     63     38
D41V6, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          20                            24
  CLUS_2                          31                            64
  CLUS_3                          29                            27
  CLUS_4                          59                            63
  CLUS_5                          10                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P21.3) MUTATED       49     30     34     29
  DEL PEAK 14(9P21.3) WILD-TYPE     58     51     68     21
D41V7, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          49                            58
  CLUS_2                          30                            51
  CLUS_3                          34                            68
  CLUS_4                          29                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(9P21.3) MUTATED       40     28     45     15     14
  DEL PEAK 14(9P21.3) WILD-TYPE     30     54     55     19     40
D41V8, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          40                            30
  CLUS_2                          28                            54
  CLUS_3                          45                            55
  CLUS_4                          15                            19
  CLUS_5                          14                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 15(9Q31.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9Q31.3) MUTATED       10     66     43
  DEL PEAK 15(9Q31.3) WILD-TYPE     83     85     83
D42V1, multiclass
        clus
vv       DEL PEAK 15(9Q31.3) MUTATED DEL PEAK 15(9Q31.3) WILD-TYPE
  CLUS_1                          10                            83
  CLUS_2                          66                            85
  CLUS_3                          43                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9Q31.3) MUTATED       23     46     50
  DEL PEAK 15(9Q31.3) WILD-TYPE     70    115     66
D42V2, multiclass
        clus
vv       DEL PEAK 15(9Q31.3) MUTATED DEL PEAK 15(9Q31.3) WILD-TYPE
  CLUS_1                          23                            70
  CLUS_2                          46                           115
  CLUS_3                          50                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9Q31.3) MUTATED       25     29     31     24      9
  DEL PEAK 15(9Q31.3) WILD-TYPE     42     57     40     47     60
D42V3, multiclass
        clus
vv       DEL PEAK 15(9Q31.3) MUTATED DEL PEAK 15(9Q31.3) WILD-TYPE
  CLUS_1                          25                            42
  CLUS_2                          29                            57
  CLUS_3                          31                            40
  CLUS_4                          24                            47
  CLUS_5                           9                            60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9Q31.3) MUTATED       21     16     38     37      6
  DEL PEAK 15(9Q31.3) WILD-TYPE     33     40     76     47     50
D42V4, multiclass
        clus
vv       DEL PEAK 15(9Q31.3) MUTATED DEL PEAK 15(9Q31.3) WILD-TYPE
  CLUS_1                          21                            33
  CLUS_2                          16                            40
  CLUS_3                          38                            76
  CLUS_4                          37                            47
  CLUS_5                           6                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9Q31.3) MUTATED       17     19     29     16     17     18
  DEL PEAK 15(9Q31.3) WILD-TYPE     23     44     63     68     29     22
D42V5, multiclass
        clus
vv       DEL PEAK 15(9Q31.3) MUTATED DEL PEAK 15(9Q31.3) WILD-TYPE
  CLUS_1                          17                            23
  CLUS_2                          19                            44
  CLUS_3                          29                            63
  CLUS_4                          16                            68
  CLUS_5                          17                            29
  CLUS_6                          18                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9Q31.3) MUTATED       17     30     21     43      5
  DEL PEAK 15(9Q31.3) WILD-TYPE     27     65     35     79     43
D42V6, multiclass
        clus
vv       DEL PEAK 15(9Q31.3) MUTATED DEL PEAK 15(9Q31.3) WILD-TYPE
  CLUS_1                          17                            27
  CLUS_2                          30                            65
  CLUS_3                          21                            35
  CLUS_4                          43                            79
  CLUS_5                           5                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9Q31.3) MUTATED       38     27     26     20
  DEL PEAK 15(9Q31.3) WILD-TYPE     69     54     76     30
D42V7, multiclass
        clus
vv       DEL PEAK 15(9Q31.3) MUTATED DEL PEAK 15(9Q31.3) WILD-TYPE
  CLUS_1                          38                            69
  CLUS_2                          27                            54
  CLUS_3                          26                            76
  CLUS_4                          20                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9Q31.3) MUTATED       29     25     36     16      5
  DEL PEAK 15(9Q31.3) WILD-TYPE     41     57     64     18     49
D42V8, multiclass
        clus
vv       DEL PEAK 15(9Q31.3) MUTATED DEL PEAK 15(9Q31.3) WILD-TYPE
  CLUS_1                          29                            41
  CLUS_2                          25                            57
  CLUS_3                          36                            64
  CLUS_4                          16                            18
  CLUS_5                           5                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 16(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       11     71     15
  DEL PEAK 16(10Q23.31) WILD-TYPE     82     80    111
D43V1, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            11                              82
  CLUS_2                            71                              80
  CLUS_3                            15                             111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       32     45     20
  DEL PEAK 16(10Q23.31) WILD-TYPE     61    116     96
D43V2, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            32                              61
  CLUS_2                            45                             116
  CLUS_3                            20                              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(10Q23.31) MUTATED       38     29      6     16      5
  DEL PEAK 16(10Q23.31) WILD-TYPE     29     57     65     55     64
D43V3, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            38                              29
  CLUS_2                            29                              57
  CLUS_3                             6                              65
  CLUS_4                            16                              55
  CLUS_5                             5                              64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(10Q23.31) MUTATED       27      9     41     11      6
  DEL PEAK 16(10Q23.31) WILD-TYPE     27     47     73     73     50
D43V4, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            27                              27
  CLUS_2                             9                              47
  CLUS_3                            41                              73
  CLUS_4                            11                              73
  CLUS_5                             6                              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(10Q23.31) MUTATED       15     33     15     11      9     14
  DEL PEAK 16(10Q23.31) WILD-TYPE     25     30     77     73     37     26
D43V5, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            15                              25
  CLUS_2                            33                              30
  CLUS_3                            15                              77
  CLUS_4                            11                              73
  CLUS_5                             9                              37
  CLUS_6                            14                              26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(10Q23.31) MUTATED       15     41     13     25      3
  DEL PEAK 16(10Q23.31) WILD-TYPE     29     54     43     97     45
D43V6, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            15                              29
  CLUS_2                            41                              54
  CLUS_3                            13                              43
  CLUS_4                            25                              97
  CLUS_5                             3                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.31) MUTATED       42     19     21     12
  DEL PEAK 16(10Q23.31) WILD-TYPE     65     62     81     38
D43V7, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            42                              65
  CLUS_2                            19                              62
  CLUS_3                            21                              81
  CLUS_4                            12                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(10Q23.31) MUTATED       21     38     20     13      2
  DEL PEAK 16(10Q23.31) WILD-TYPE     49     44     80     21     52
D43V8, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            21                              49
  CLUS_2                            38                              44
  CLUS_3                            20                              80
  CLUS_4                            13                              21
  CLUS_5                             2                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 17(10Q26.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q26.13) MUTATED       15     75     15
  DEL PEAK 17(10Q26.13) WILD-TYPE     78     76    111
D44V1, multiclass
        clus
vv       DEL PEAK 17(10Q26.13) MUTATED DEL PEAK 17(10Q26.13) WILD-TYPE
  CLUS_1                            15                              78
  CLUS_2                            75                              76
  CLUS_3                            15                             111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q26.13) MUTATED       36     44     25
  DEL PEAK 17(10Q26.13) WILD-TYPE     57    117     91
D44V2, multiclass
        clus
vv       DEL PEAK 17(10Q26.13) MUTATED DEL PEAK 17(10Q26.13) WILD-TYPE
  CLUS_1                            36                              57
  CLUS_2                            44                             117
  CLUS_3                            25                              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q26.13) MUTATED       37     32     10     18      5
  DEL PEAK 17(10Q26.13) WILD-TYPE     30     54     61     53     64
D44V3, multiclass
        clus
vv       DEL PEAK 17(10Q26.13) MUTATED DEL PEAK 17(10Q26.13) WILD-TYPE
  CLUS_1                            37                              30
  CLUS_2                            32                              54
  CLUS_3                            10                              61
  CLUS_4                            18                              53
  CLUS_5                             5                              64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q26.13) MUTATED       30     11     41     14      6
  DEL PEAK 17(10Q26.13) WILD-TYPE     24     45     73     70     50
D44V4, multiclass
        clus
vv       DEL PEAK 17(10Q26.13) MUTATED DEL PEAK 17(10Q26.13) WILD-TYPE
  CLUS_1                            30                              24
  CLUS_2                            11                              45
  CLUS_3                            41                              73
  CLUS_4                            14                              70
  CLUS_5                             6                              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q26.13) MUTATED       13     32     19     13     11     17
  DEL PEAK 17(10Q26.13) WILD-TYPE     27     31     73     71     35     23
D44V5, multiclass
        clus
vv       DEL PEAK 17(10Q26.13) MUTATED DEL PEAK 17(10Q26.13) WILD-TYPE
  CLUS_1                            13                              27
  CLUS_2                            32                              31
  CLUS_3                            19                              73
  CLUS_4                            13                              71
  CLUS_5                            11                              35
  CLUS_6                            17                              23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q26.13) MUTATED       14     45     12     31      3
  DEL PEAK 17(10Q26.13) WILD-TYPE     30     50     44     91     45
D44V6, multiclass
        clus
vv       DEL PEAK 17(10Q26.13) MUTATED DEL PEAK 17(10Q26.13) WILD-TYPE
  CLUS_1                            14                              30
  CLUS_2                            45                              50
  CLUS_3                            12                              44
  CLUS_4                            31                              91
  CLUS_5                             3                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q26.13) MUTATED       41     24     22     15
  DEL PEAK 17(10Q26.13) WILD-TYPE     66     57     80     35
D44V7, multiclass
        clus
vv       DEL PEAK 17(10Q26.13) MUTATED DEL PEAK 17(10Q26.13) WILD-TYPE
  CLUS_1                            41                              66
  CLUS_2                            24                              57
  CLUS_3                            22                              80
  CLUS_4                            15                              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q26.13) MUTATED       22     40     25     13      2
  DEL PEAK 17(10Q26.13) WILD-TYPE     48     42     75     21     52
D44V8, multiclass
        clus
vv       DEL PEAK 17(10Q26.13) MUTATED DEL PEAK 17(10Q26.13) WILD-TYPE
  CLUS_1                            22                              48
  CLUS_2                            40                              42
  CLUS_3                            25                              75
  CLUS_4                            13                              21
  CLUS_5                             2                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 18(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q14.1) MUTATED       10     37     30
  DEL PEAK 18(11Q14.1) WILD-TYPE     83    114     96
D45V1, multiclass
        clus
vv       DEL PEAK 18(11Q14.1) MUTATED DEL PEAK 18(11Q14.1) WILD-TYPE
  CLUS_1                           10                             83
  CLUS_2                           37                            114
  CLUS_3                           30                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q14.1) MUTATED       21     37     19
  DEL PEAK 18(11Q14.1) WILD-TYPE     72    124     97
D45V2, multiclass
        clus
vv       DEL PEAK 18(11Q14.1) MUTATED DEL PEAK 18(11Q14.1) WILD-TYPE
  CLUS_1                           21                             72
  CLUS_2                           37                            124
  CLUS_3                           19                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11Q14.1) MUTATED       20     14     19     12     11
  DEL PEAK 18(11Q14.1) WILD-TYPE     47     72     52     59     58
D45V3, multiclass
        clus
vv       DEL PEAK 18(11Q14.1) MUTATED DEL PEAK 18(11Q14.1) WILD-TYPE
  CLUS_1                           20                             47
  CLUS_2                           14                             72
  CLUS_3                           19                             52
  CLUS_4                           12                             59
  CLUS_5                           11                             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11Q14.1) MUTATED       14      7     24     23      8
  DEL PEAK 18(11Q14.1) WILD-TYPE     40     49     90     61     48
D45V4, multiclass
        clus
vv       DEL PEAK 18(11Q14.1) MUTATED DEL PEAK 18(11Q14.1) WILD-TYPE
  CLUS_1                           14                             40
  CLUS_2                            7                             49
  CLUS_3                           24                             90
  CLUS_4                           23                             61
  CLUS_5                            8                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(11Q14.1) MUTATED        9     14     14     16      8     15
  DEL PEAK 18(11Q14.1) WILD-TYPE     31     49     78     68     38     25
D45V5, multiclass
        clus
vv       DEL PEAK 18(11Q14.1) MUTATED DEL PEAK 18(11Q14.1) WILD-TYPE
  CLUS_1                            9                             31
  CLUS_2                           14                             49
  CLUS_3                           14                             78
  CLUS_4                           16                             68
  CLUS_5                            8                             38
  CLUS_6                           15                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11Q14.1) MUTATED       10     21     17     21      7
  DEL PEAK 18(11Q14.1) WILD-TYPE     34     74     39    101     41
D45V6, multiclass
        clus
vv       DEL PEAK 18(11Q14.1) MUTATED DEL PEAK 18(11Q14.1) WILD-TYPE
  CLUS_1                           10                             34
  CLUS_2                           21                             74
  CLUS_3                           17                             39
  CLUS_4                           21                            101
  CLUS_5                            7                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11Q14.1) MUTATED       33     13     13     12
  DEL PEAK 18(11Q14.1) WILD-TYPE     74     68     89     38
D45V7, multiclass
        clus
vv       DEL PEAK 18(11Q14.1) MUTATED DEL PEAK 18(11Q14.1) WILD-TYPE
  CLUS_1                           33                             74
  CLUS_2                           13                             68
  CLUS_3                           13                             89
  CLUS_4                           12                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11Q14.1) MUTATED       23     21     15      6      6
  DEL PEAK 18(11Q14.1) WILD-TYPE     47     61     85     28     48
D45V8, multiclass
        clus
vv       DEL PEAK 18(11Q14.1) MUTATED DEL PEAK 18(11Q14.1) WILD-TYPE
  CLUS_1                           23                             47
  CLUS_2                           21                             61
  CLUS_3                           15                             85
  CLUS_4                            6                             28
  CLUS_5                            6                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 19(11Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q23.3) MUTATED       10     45     38
  DEL PEAK 19(11Q23.3) WILD-TYPE     83    106     88
D46V1, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           10                             83
  CLUS_2                           45                            106
  CLUS_3                           38                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q23.3) MUTATED       19     43     31
  DEL PEAK 19(11Q23.3) WILD-TYPE     74    118     85
D46V2, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           19                             74
  CLUS_2                           43                            118
  CLUS_3                           31                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q23.3) MUTATED       22     17     25     15     13
  DEL PEAK 19(11Q23.3) WILD-TYPE     45     69     46     56     56
D46V3, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           22                             45
  CLUS_2                           17                             69
  CLUS_3                           25                             46
  CLUS_4                           15                             56
  CLUS_5                           13                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q23.3) MUTATED       16      8     31     28      9
  DEL PEAK 19(11Q23.3) WILD-TYPE     38     48     83     56     47
D46V4, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           16                             38
  CLUS_2                            8                             48
  CLUS_3                           31                             83
  CLUS_4                           28                             56
  CLUS_5                            9                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(11Q23.3) MUTATED        9     18     20     17     10     18
  DEL PEAK 19(11Q23.3) WILD-TYPE     31     45     72     67     36     22
D46V5, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                            9                             31
  CLUS_2                           18                             45
  CLUS_3                           20                             72
  CLUS_4                           17                             67
  CLUS_5                           10                             36
  CLUS_6                           18                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q23.3) MUTATED        9     28     20     27      8
  DEL PEAK 19(11Q23.3) WILD-TYPE     35     67     36     95     40
D46V6, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           28                             67
  CLUS_3                           20                             36
  CLUS_4                           27                             95
  CLUS_5                            8                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11Q23.3) MUTATED       39     17     18     12
  DEL PEAK 19(11Q23.3) WILD-TYPE     68     64     84     38
D46V7, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           39                             68
  CLUS_2                           17                             64
  CLUS_3                           18                             84
  CLUS_4                           12                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q23.3) MUTATED       27     27     20      5      7
  DEL PEAK 19(11Q23.3) WILD-TYPE     43     55     80     29     47
D46V8, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           27                             43
  CLUS_2                           27                             55
  CLUS_3                           20                             80
  CLUS_4                            5                             29
  CLUS_5                            7                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 20(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12P12.1) MUTATED        9     44     25
  DEL PEAK 20(12P12.1) WILD-TYPE     84    107    101
D47V1, multiclass
        clus
vv       DEL PEAK 20(12P12.1) MUTATED DEL PEAK 20(12P12.1) WILD-TYPE
  CLUS_1                            9                             84
  CLUS_2                           44                            107
  CLUS_3                           25                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12P12.1) MUTATED       20     38     20
  DEL PEAK 20(12P12.1) WILD-TYPE     73    123     96
D47V2, multiclass
        clus
vv       DEL PEAK 20(12P12.1) MUTATED DEL PEAK 20(12P12.1) WILD-TYPE
  CLUS_1                           20                             73
  CLUS_2                           38                            123
  CLUS_3                           20                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12P12.1) MUTATED       24     24     10     11      9
  DEL PEAK 20(12P12.1) WILD-TYPE     43     62     61     60     60
D47V3, multiclass
        clus
vv       DEL PEAK 20(12P12.1) MUTATED DEL PEAK 20(12P12.1) WILD-TYPE
  CLUS_1                           24                             43
  CLUS_2                           24                             62
  CLUS_3                           10                             61
  CLUS_4                           11                             60
  CLUS_5                            9                             60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12P12.1) MUTATED       16     16     22     15      9
  DEL PEAK 20(12P12.1) WILD-TYPE     38     40     92     69     47
D47V4, multiclass
        clus
vv       DEL PEAK 20(12P12.1) MUTATED DEL PEAK 20(12P12.1) WILD-TYPE
  CLUS_1                           16                             38
  CLUS_2                           16                             40
  CLUS_3                           22                             92
  CLUS_4                           15                             69
  CLUS_5                            9                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(12P12.1) MUTATED       15     17     15     13      9      7
  DEL PEAK 20(12P12.1) WILD-TYPE     25     46     77     71     37     33
D47V5, multiclass
        clus
vv       DEL PEAK 20(12P12.1) MUTATED DEL PEAK 20(12P12.1) WILD-TYPE
  CLUS_1                           15                             25
  CLUS_2                           17                             46
  CLUS_3                           15                             77
  CLUS_4                           13                             71
  CLUS_5                            9                             37
  CLUS_6                            7                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12P12.1) MUTATED       14     27      8     21      6
  DEL PEAK 20(12P12.1) WILD-TYPE     30     68     48    101     42
D47V6, multiclass
        clus
vv       DEL PEAK 20(12P12.1) MUTATED DEL PEAK 20(12P12.1) WILD-TYPE
  CLUS_1                           14                             30
  CLUS_2                           27                             68
  CLUS_3                            8                             48
  CLUS_4                           21                            101
  CLUS_5                            6                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12P12.1) MUTATED       30     13     23      8
  DEL PEAK 20(12P12.1) WILD-TYPE     77     68     79     42
D47V7, multiclass
        clus
vv       DEL PEAK 20(12P12.1) MUTATED DEL PEAK 20(12P12.1) WILD-TYPE
  CLUS_1                           30                             77
  CLUS_2                           13                             68
  CLUS_3                           23                             79
  CLUS_4                            8                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12P12.1) MUTATED       11     26     16     11     10
  DEL PEAK 20(12P12.1) WILD-TYPE     59     56     84     23     44
D47V8, multiclass
        clus
vv       DEL PEAK 20(12P12.1) MUTATED DEL PEAK 20(12P12.1) WILD-TYPE
  CLUS_1                           11                             59
  CLUS_2                           26                             56
  CLUS_3                           16                             84
  CLUS_4                           11                             23
  CLUS_5                           10                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 21(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12Q24.33) MUTATED        7     35     17
  DEL PEAK 21(12Q24.33) WILD-TYPE     86    116    109
D48V1, multiclass
        clus
vv       DEL PEAK 21(12Q24.33) MUTATED DEL PEAK 21(12Q24.33) WILD-TYPE
  CLUS_1                             7                              86
  CLUS_2                            35                             116
  CLUS_3                            17                             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12Q24.33) MUTATED       15     26     18
  DEL PEAK 21(12Q24.33) WILD-TYPE     78    135     98
D48V2, multiclass
        clus
vv       DEL PEAK 21(12Q24.33) MUTATED DEL PEAK 21(12Q24.33) WILD-TYPE
  CLUS_1                            15                              78
  CLUS_2                            26                             135
  CLUS_3                            18                              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(12Q24.33) MUTATED       12     17     10     11      7
  DEL PEAK 21(12Q24.33) WILD-TYPE     55     69     61     60     62
D48V3, multiclass
        clus
vv       DEL PEAK 21(12Q24.33) MUTATED DEL PEAK 21(12Q24.33) WILD-TYPE
  CLUS_1                            12                              55
  CLUS_2                            17                              69
  CLUS_3                            10                              61
  CLUS_4                            11                              60
  CLUS_5                             7                              62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(12Q24.33) MUTATED        9     11     17     12      8
  DEL PEAK 21(12Q24.33) WILD-TYPE     45     45     97     72     48
D48V4, multiclass
        clus
vv       DEL PEAK 21(12Q24.33) MUTATED DEL PEAK 21(12Q24.33) WILD-TYPE
  CLUS_1                             9                              45
  CLUS_2                            11                              45
  CLUS_3                            17                              97
  CLUS_4                            12                              72
  CLUS_5                             8                              48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(12Q24.33) MUTATED        9      8     14     10      8      9
  DEL PEAK 21(12Q24.33) WILD-TYPE     31     55     78     74     38     31
D48V5, multiclass
        clus
vv       DEL PEAK 21(12Q24.33) MUTATED DEL PEAK 21(12Q24.33) WILD-TYPE
  CLUS_1                             9                              31
  CLUS_2                             8                              55
  CLUS_3                            14                              78
  CLUS_4                            10                              74
  CLUS_5                             8                              38
  CLUS_6                             9                              31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(12Q24.33) MUTATED        8     16      7     22      5
  DEL PEAK 21(12Q24.33) WILD-TYPE     36     79     49    100     43
D48V6, multiclass
        clus
vv       DEL PEAK 21(12Q24.33) MUTATED DEL PEAK 21(12Q24.33) WILD-TYPE
  CLUS_1                             8                              36
  CLUS_2                            16                              79
  CLUS_3                             7                              49
  CLUS_4                            22                             100
  CLUS_5                             5                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(12Q24.33) MUTATED       19     15     14      7
  DEL PEAK 21(12Q24.33) WILD-TYPE     88     66     88     43
D48V7, multiclass
        clus
vv       DEL PEAK 21(12Q24.33) MUTATED DEL PEAK 21(12Q24.33) WILD-TYPE
  CLUS_1                            19                              88
  CLUS_2                            15                              66
  CLUS_3                            14                              88
  CLUS_4                             7                              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(12Q24.33) MUTATED        7     19     15      6      8
  DEL PEAK 21(12Q24.33) WILD-TYPE     63     63     85     28     46
D48V8, multiclass
        clus
vv       DEL PEAK 21(12Q24.33) MUTATED DEL PEAK 21(12Q24.33) WILD-TYPE
  CLUS_1                             7                              63
  CLUS_2                            19                              63
  CLUS_3                            15                              85
  CLUS_4                             6                              28
  CLUS_5                             8                              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 22(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q14.2) MUTATED       21    109     49
  DEL PEAK 22(13Q14.2) WILD-TYPE     72     42     77
D49V1, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           21                             72
  CLUS_2                          109                             42
  CLUS_3                           49                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q14.2) MUTATED       41     73     65
  DEL PEAK 22(13Q14.2) WILD-TYPE     52     88     51
D49V2, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           41                             52
  CLUS_2                           73                             88
  CLUS_3                           65                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(13Q14.2) MUTATED       41     45     41     30     19
  DEL PEAK 22(13Q14.2) WILD-TYPE     26     41     30     41     50
D49V3, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           41                             26
  CLUS_2                           45                             41
  CLUS_3                           41                             30
  CLUS_4                           30                             41
  CLUS_5                           19                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(13Q14.2) MUTATED       34     15     67     46     14
  DEL PEAK 22(13Q14.2) WILD-TYPE     20     41     47     38     42
D49V4, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           34                             20
  CLUS_2                           15                             41
  CLUS_3                           67                             47
  CLUS_4                           46                             38
  CLUS_5                           14                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(13Q14.2) MUTATED       26     36     45     26     20     24
  DEL PEAK 22(13Q14.2) WILD-TYPE     14     27     47     58     26     16
D49V5, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           26                             14
  CLUS_2                           36                             27
  CLUS_3                           45                             47
  CLUS_4                           26                             58
  CLUS_5                           20                             26
  CLUS_6                           24                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(13Q14.2) MUTATED       28     53     26     59     11
  DEL PEAK 22(13Q14.2) WILD-TYPE     16     42     30     63     37
D49V6, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           28                             16
  CLUS_2                           53                             42
  CLUS_3                           26                             30
  CLUS_4                           59                             63
  CLUS_5                           11                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q14.2) MUTATED       63     42     38     25
  DEL PEAK 22(13Q14.2) WILD-TYPE     44     39     64     25
D49V7, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           63                             44
  CLUS_2                           42                             39
  CLUS_3                           38                             64
  CLUS_4                           25                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(13Q14.2) MUTATED       37     48     49     22     12
  DEL PEAK 22(13Q14.2) WILD-TYPE     33     34     51     12     42
D49V8, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           37                             33
  CLUS_2                           48                             34
  CLUS_3                           49                             51
  CLUS_4                           22                             12
  CLUS_5                           12                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 23(14Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q23.3) MUTATED        9     83     39
  DEL PEAK 23(14Q23.3) WILD-TYPE     84     68     87
D50V1, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                            9                             84
  CLUS_2                           83                             68
  CLUS_3                           39                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q23.3) MUTATED       30     55     46
  DEL PEAK 23(14Q23.3) WILD-TYPE     63    106     70
D50V2, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                           30                             63
  CLUS_2                           55                            106
  CLUS_3                           46                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(14Q23.3) MUTATED       36     23     29     24     17
  DEL PEAK 23(14Q23.3) WILD-TYPE     31     63     42     47     52
D50V3, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                           36                             31
  CLUS_2                           23                             63
  CLUS_3                           29                             42
  CLUS_4                           24                             47
  CLUS_5                           17                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(14Q23.3) MUTATED       34     12     38     32     13
  DEL PEAK 23(14Q23.3) WILD-TYPE     20     44     76     52     43
D50V4, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                           34                             20
  CLUS_2                           12                             44
  CLUS_3                           38                             76
  CLUS_4                           32                             52
  CLUS_5                           13                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(14Q23.3) MUTATED       21     26     26     21     17     19
  DEL PEAK 23(14Q23.3) WILD-TYPE     19     37     66     63     29     21
D50V5, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                           21                             19
  CLUS_2                           26                             37
  CLUS_3                           26                             66
  CLUS_4                           21                             63
  CLUS_5                           17                             29
  CLUS_6                           19                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(14Q23.3) MUTATED       22     32     22     43     11
  DEL PEAK 23(14Q23.3) WILD-TYPE     22     63     34     79     37
D50V6, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                           22                             22
  CLUS_2                           32                             63
  CLUS_3                           22                             34
  CLUS_4                           43                             79
  CLUS_5                           11                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(14Q23.3) MUTATED       52     29     25     19
  DEL PEAK 23(14Q23.3) WILD-TYPE     55     52     77     31
D50V7, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                           52                             55
  CLUS_2                           29                             52
  CLUS_3                           25                             77
  CLUS_4                           19                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(14Q23.3) MUTATED       33     26     35     17     14
  DEL PEAK 23(14Q23.3) WILD-TYPE     37     56     65     17     40
D50V8, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                           33                             37
  CLUS_2                           26                             56
  CLUS_3                           35                             65
  CLUS_4                           17                             17
  CLUS_5                           14                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 24(14Q32.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q32.33) MUTATED       10     83     40
  DEL PEAK 24(14Q32.33) WILD-TYPE     83     68     86
D51V1, multiclass
        clus
vv       DEL PEAK 24(14Q32.33) MUTATED DEL PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                            10                              83
  CLUS_2                            83                              68
  CLUS_3                            40                              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q32.33) MUTATED       32     51     50
  DEL PEAK 24(14Q32.33) WILD-TYPE     61    110     66
D51V2, multiclass
        clus
vv       DEL PEAK 24(14Q32.33) MUTATED DEL PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                            32                              61
  CLUS_2                            51                             110
  CLUS_3                            50                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(14Q32.33) MUTATED       35     24     30     25     17
  DEL PEAK 24(14Q32.33) WILD-TYPE     32     62     41     46     52
D51V3, multiclass
        clus
vv       DEL PEAK 24(14Q32.33) MUTATED DEL PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                            35                              32
  CLUS_2                            24                              62
  CLUS_3                            30                              41
  CLUS_4                            25                              46
  CLUS_5                            17                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(14Q32.33) MUTATED       33     12     37     35     14
  DEL PEAK 24(14Q32.33) WILD-TYPE     21     44     77     49     42
D51V4, multiclass
        clus
vv       DEL PEAK 24(14Q32.33) MUTATED DEL PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                            33                              21
  CLUS_2                            12                              44
  CLUS_3                            37                              77
  CLUS_4                            35                              49
  CLUS_5                            14                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(14Q32.33) MUTATED       19     25     33     20     16     18
  DEL PEAK 24(14Q32.33) WILD-TYPE     21     38     59     64     30     22
D51V5, multiclass
        clus
vv       DEL PEAK 24(14Q32.33) MUTATED DEL PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                            19                              21
  CLUS_2                            25                              38
  CLUS_3                            33                              59
  CLUS_4                            20                              64
  CLUS_5                            16                              30
  CLUS_6                            18                              22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(14Q32.33) MUTATED       21     35     21     43     11
  DEL PEAK 24(14Q32.33) WILD-TYPE     23     60     35     79     37
D51V6, multiclass
        clus
vv       DEL PEAK 24(14Q32.33) MUTATED DEL PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                            21                              23
  CLUS_2                            35                              60
  CLUS_3                            21                              35
  CLUS_4                            43                              79
  CLUS_5                            11                              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q32.33) MUTATED       48     32     25     21
  DEL PEAK 24(14Q32.33) WILD-TYPE     59     49     77     29
D51V7, multiclass
        clus
vv       DEL PEAK 24(14Q32.33) MUTATED DEL PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                            48                              59
  CLUS_2                            32                              49
  CLUS_3                            25                              77
  CLUS_4                            21                              29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(14Q32.33) MUTATED       32     23     41     17     13
  DEL PEAK 24(14Q32.33) WILD-TYPE     38     59     59     17     41
D51V8, multiclass
        clus
vv       DEL PEAK 24(14Q32.33) MUTATED DEL PEAK 24(14Q32.33) WILD-TYPE
  CLUS_1                            32                              38
  CLUS_2                            23                              59
  CLUS_3                            41                              59
  CLUS_4                            17                              17
  CLUS_5                            13                              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 25(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q26.3) MUTATED       11     47     21
  DEL PEAK 25(15Q26.3) WILD-TYPE     82    104    105
D52V1, multiclass
        clus
vv       DEL PEAK 25(15Q26.3) MUTATED DEL PEAK 25(15Q26.3) WILD-TYPE
  CLUS_1                           11                             82
  CLUS_2                           47                            104
  CLUS_3                           21                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q26.3) MUTATED       20     30     29
  DEL PEAK 25(15Q26.3) WILD-TYPE     73    131     87
D52V2, multiclass
        clus
vv       DEL PEAK 25(15Q26.3) MUTATED DEL PEAK 25(15Q26.3) WILD-TYPE
  CLUS_1                           20                             73
  CLUS_2                           30                            131
  CLUS_3                           29                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(15Q26.3) MUTATED       25     17     16     11      9
  DEL PEAK 25(15Q26.3) WILD-TYPE     42     69     55     60     60
D52V3, multiclass
        clus
vv       DEL PEAK 25(15Q26.3) MUTATED DEL PEAK 25(15Q26.3) WILD-TYPE
  CLUS_1                           25                             42
  CLUS_2                           17                             69
  CLUS_3                           16                             55
  CLUS_4                           11                             60
  CLUS_5                            9                             60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(15Q26.3) MUTATED       21      6     22     19     10
  DEL PEAK 25(15Q26.3) WILD-TYPE     33     50     92     65     46
D52V4, multiclass
        clus
vv       DEL PEAK 25(15Q26.3) MUTATED DEL PEAK 25(15Q26.3) WILD-TYPE
  CLUS_1                           21                             33
  CLUS_2                            6                             50
  CLUS_3                           22                             92
  CLUS_4                           19                             65
  CLUS_5                           10                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(15Q26.3) MUTATED        9     13     13     15     15     13
  DEL PEAK 25(15Q26.3) WILD-TYPE     31     50     79     69     31     27
D52V5, multiclass
        clus
vv       DEL PEAK 25(15Q26.3) MUTATED DEL PEAK 25(15Q26.3) WILD-TYPE
  CLUS_1                            9                             31
  CLUS_2                           13                             50
  CLUS_3                           13                             79
  CLUS_4                           15                             69
  CLUS_5                           15                             31
  CLUS_6                           13                             27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(15Q26.3) MUTATED        9     20     18     26      5
  DEL PEAK 25(15Q26.3) WILD-TYPE     35     75     38     96     43
D52V6, multiclass
        clus
vv       DEL PEAK 25(15Q26.3) MUTATED DEL PEAK 25(15Q26.3) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           20                             75
  CLUS_3                           18                             38
  CLUS_4                           26                             96
  CLUS_5                            5                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q26.3) MUTATED       32     11     15     17
  DEL PEAK 25(15Q26.3) WILD-TYPE     75     70     87     33
D52V7, multiclass
        clus
vv       DEL PEAK 25(15Q26.3) MUTATED DEL PEAK 25(15Q26.3) WILD-TYPE
  CLUS_1                           32                             75
  CLUS_2                           11                             70
  CLUS_3                           15                             87
  CLUS_4                           17                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(15Q26.3) MUTATED       21     17     25      7      5
  DEL PEAK 25(15Q26.3) WILD-TYPE     49     65     75     27     49
D52V8, multiclass
        clus
vv       DEL PEAK 25(15Q26.3) MUTATED DEL PEAK 25(15Q26.3) WILD-TYPE
  CLUS_1                           21                             49
  CLUS_2                           17                             65
  CLUS_3                           25                             75
  CLUS_4                            7                             27
  CLUS_5                            5                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 26(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED        8     86     68
  DEL PEAK 26(16Q23.1) WILD-TYPE     85     65     58
D53V1, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                            8                             85
  CLUS_2                           86                             65
  CLUS_3                           68                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED       30     56     76
  DEL PEAK 26(16Q23.1) WILD-TYPE     63    105     40
D53V2, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           30                             63
  CLUS_2                           56                            105
  CLUS_3                           76                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q23.1) MUTATED       36     34     60     20     10
  DEL PEAK 26(16Q23.1) WILD-TYPE     31     52     11     51     59
D53V3, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           36                             31
  CLUS_2                           34                             52
  CLUS_3                           60                             11
  CLUS_4                           20                             51
  CLUS_5                           10                             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q23.1) MUTATED       25     18     52     57      8
  DEL PEAK 26(16Q23.1) WILD-TYPE     29     38     62     27     48
D53V4, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           25                             29
  CLUS_2                           18                             38
  CLUS_3                           52                             62
  CLUS_4                           57                             27
  CLUS_5                            8                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(16Q23.1) MUTATED       19     28     32     24     32     25
  DEL PEAK 26(16Q23.1) WILD-TYPE     21     35     60     60     14     15
D53V5, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           19                             21
  CLUS_2                           28                             35
  CLUS_3                           32                             60
  CLUS_4                           24                             60
  CLUS_5                           32                             14
  CLUS_6                           25                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q23.1) MUTATED       19     40     33     62      6
  DEL PEAK 26(16Q23.1) WILD-TYPE     25     55     23     60     42
D53V6, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           19                             25
  CLUS_2                           40                             55
  CLUS_3                           33                             23
  CLUS_4                           62                             60
  CLUS_5                            6                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(16Q23.1) MUTATED       61     33     28     32
  DEL PEAK 26(16Q23.1) WILD-TYPE     46     48     74     18
D53V7, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           61                             46
  CLUS_2                           33                             48
  CLUS_3                           28                             74
  CLUS_4                           32                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q23.1) MUTATED       44     36     50     14     10
  DEL PEAK 26(16Q23.1) WILD-TYPE     26     46     50     20     44
D53V8, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           44                             26
  CLUS_2                           36                             46
  CLUS_3                           50                             50
  CLUS_4                           14                             20
  CLUS_5                           10                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 27(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17P13.1) MUTATED       37    137     52
  DEL PEAK 27(17P13.1) WILD-TYPE     56     14     74
D54V1, multiclass
        clus
vv       DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE
  CLUS_1                           37                             56
  CLUS_2                          137                             14
  CLUS_3                           52                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17P13.1) MUTATED       53    109     64
  DEL PEAK 27(17P13.1) WILD-TYPE     40     52     52
D54V2, multiclass
        clus
vv       DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE
  CLUS_1                           53                             40
  CLUS_2                          109                             52
  CLUS_3                           64                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17P13.1) MUTATED       53     63     37     35     33
  DEL PEAK 27(17P13.1) WILD-TYPE     14     23     34     36     36
D54V3, multiclass
        clus
vv       DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE
  CLUS_1                           53                             14
  CLUS_2                           63                             23
  CLUS_3                           37                             34
  CLUS_4                           35                             36
  CLUS_5                           33                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17P13.1) MUTATED       40     28     85     42     26
  DEL PEAK 27(17P13.1) WILD-TYPE     14     28     29     42     30
D54V4, multiclass
        clus
vv       DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE
  CLUS_1                           40                             14
  CLUS_2                           28                             28
  CLUS_3                           85                             29
  CLUS_4                           42                             42
  CLUS_5                           26                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(17P13.1) MUTATED       35     49     48     40     27     25
  DEL PEAK 27(17P13.1) WILD-TYPE      5     14     44     44     19     15
D54V5, multiclass
        clus
vv       DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE
  CLUS_1                           35                              5
  CLUS_2                           49                             14
  CLUS_3                           48                             44
  CLUS_4                           40                             44
  CLUS_5                           27                             19
  CLUS_6                           25                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17P13.1) MUTATED       38     67     30     66     23
  DEL PEAK 27(17P13.1) WILD-TYPE      6     28     26     56     25
D54V6, multiclass
        clus
vv       DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE
  CLUS_1                           38                              6
  CLUS_2                           67                             28
  CLUS_3                           30                             26
  CLUS_4                           66                             56
  CLUS_5                           23                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(17P13.1) MUTATED       73     43     65     33
  DEL PEAK 27(17P13.1) WILD-TYPE     34     38     37     17
D54V7, multiclass
        clus
vv       DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE
  CLUS_1                           73                             34
  CLUS_2                           43                             38
  CLUS_3                           65                             37
  CLUS_4                           33                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17P13.1) MUTATED       39     65     55     30     25
  DEL PEAK 27(17P13.1) WILD-TYPE     31     17     45      4     29
D54V8, multiclass
        clus
vv       DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE
  CLUS_1                           39                             31
  CLUS_2                           65                             17
  CLUS_3                           55                             45
  CLUS_4                           30                              4
  CLUS_5                           25                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 28(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P11.2) MUTATED       32    119     44
  DEL PEAK 28(17P11.2) WILD-TYPE     61     32     82
D55V1, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           32                             61
  CLUS_2                          119                             32
  CLUS_3                           44                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P11.2) MUTATED       49     91     55
  DEL PEAK 28(17P11.2) WILD-TYPE     44     70     61
D55V2, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           49                             44
  CLUS_2                           91                             70
  CLUS_3                           55                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(17P11.2) MUTATED       49     52     32     32     27
  DEL PEAK 28(17P11.2) WILD-TYPE     18     34     39     39     42
D55V3, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           49                             18
  CLUS_2                           52                             34
  CLUS_3                           32                             39
  CLUS_4                           32                             39
  CLUS_5                           27                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(17P11.2) MUTATED       37     27     68     37     23
  DEL PEAK 28(17P11.2) WILD-TYPE     17     29     46     47     33
D55V4, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           37                             17
  CLUS_2                           27                             29
  CLUS_3                           68                             46
  CLUS_4                           37                             47
  CLUS_5                           23                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(17P11.2) MUTATED       32     39     41     36     23     22
  DEL PEAK 28(17P11.2) WILD-TYPE      8     24     51     48     23     18
D55V5, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           32                              8
  CLUS_2                           39                             24
  CLUS_3                           41                             51
  CLUS_4                           36                             48
  CLUS_5                           23                             23
  CLUS_6                           22                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(17P11.2) MUTATED       36     54     25     56     22
  DEL PEAK 28(17P11.2) WILD-TYPE      8     41     31     66     26
D55V6, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           36                              8
  CLUS_2                           54                             41
  CLUS_3                           25                             31
  CLUS_4                           56                             66
  CLUS_5                           22                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(17P11.2) MUTATED       63     40     59     22
  DEL PEAK 28(17P11.2) WILD-TYPE     44     41     43     28
D55V7, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           63                             44
  CLUS_2                           40                             41
  CLUS_3                           59                             43
  CLUS_4                           22                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(17P11.2) MUTATED       34     52     48     28     22
  DEL PEAK 28(17P11.2) WILD-TYPE     36     30     52      6     32
D55V8, multiclass
        clus
vv       DEL PEAK 28(17P11.2) MUTATED DEL PEAK 28(17P11.2) WILD-TYPE
  CLUS_1                           34                             36
  CLUS_2                           52                             30
  CLUS_3                           48                             52
  CLUS_4                           28                              6
  CLUS_5                           22                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 29(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(18Q21.2) MUTATED       14     45     35
  DEL PEAK 29(18Q21.2) WILD-TYPE     79    106     91
D56V1, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           14                             79
  CLUS_2                           45                            106
  CLUS_3                           35                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(18Q21.2) MUTATED       14     34     46
  DEL PEAK 29(18Q21.2) WILD-TYPE     79    127     70
D56V2, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           14                             79
  CLUS_2                           34                            127
  CLUS_3                           46                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(18Q21.2) MUTATED       18     20     27     12     17
  DEL PEAK 29(18Q21.2) WILD-TYPE     49     66     44     59     52
D56V3, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           18                             49
  CLUS_2                           20                             66
  CLUS_3                           27                             44
  CLUS_4                           12                             59
  CLUS_5                           17                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(18Q21.2) MUTATED        9      5     28     39     13
  DEL PEAK 29(18Q21.2) WILD-TYPE     45     51     86     45     43
D56V4, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                            9                             45
  CLUS_2                            5                             51
  CLUS_3                           28                             86
  CLUS_4                           39                             45
  CLUS_5                           13                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(18Q21.2) MUTATED        9     13     24     23     11     13
  DEL PEAK 29(18Q21.2) WILD-TYPE     31     50     68     61     35     27
D56V5, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                            9                             31
  CLUS_2                           13                             50
  CLUS_3                           24                             68
  CLUS_4                           23                             61
  CLUS_5                           11                             35
  CLUS_6                           13                             27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(18Q21.2) MUTATED        8     21     17     35     12
  DEL PEAK 29(18Q21.2) WILD-TYPE     36     74     39     87     36
D56V6, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           21                             74
  CLUS_3                           17                             39
  CLUS_4                           35                             87
  CLUS_5                           12                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(18Q21.2) MUTATED       33     18     22     12
  DEL PEAK 29(18Q21.2) WILD-TYPE     74     63     80     38
D56V7, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           33                             74
  CLUS_2                           18                             63
  CLUS_3                           22                             80
  CLUS_4                           12                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(18Q21.2) MUTATED       23     16     28      7     11
  DEL PEAK 29(18Q21.2) WILD-TYPE     47     66     72     27     43
D56V8, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           23                             47
  CLUS_2                           16                             66
  CLUS_3                           28                             72
  CLUS_4                            7                             27
  CLUS_5                           11                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 30(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19P13.3) MUTATED        6     61     20
  DEL PEAK 30(19P13.3) WILD-TYPE     87     90    106
D57V1, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                            6                             87
  CLUS_2                           61                             90
  CLUS_3                           20                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19P13.3) MUTATED       21     34     32
  DEL PEAK 30(19P13.3) WILD-TYPE     72    127     84
D57V2, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                           21                             72
  CLUS_2                           34                            127
  CLUS_3                           32                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(19P13.3) MUTATED       28     17     17     12     12
  DEL PEAK 30(19P13.3) WILD-TYPE     39     69     54     59     57
D57V3, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                           28                             39
  CLUS_2                           17                             69
  CLUS_3                           17                             54
  CLUS_4                           12                             59
  CLUS_5                           12                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(19P13.3) MUTATED       22      9     23     25      7
  DEL PEAK 30(19P13.3) WILD-TYPE     32     47     91     59     49
D57V4, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                           22                             32
  CLUS_2                            9                             47
  CLUS_3                           23                             91
  CLUS_4                           25                             59
  CLUS_5                            7                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(19P13.3) MUTATED       17     14     17     18     10     10
  DEL PEAK 30(19P13.3) WILD-TYPE     23     49     75     66     36     30
D57V5, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                           17                             23
  CLUS_2                           14                             49
  CLUS_3                           17                             75
  CLUS_4                           18                             66
  CLUS_5                           10                             36
  CLUS_6                           10                             30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(19P13.3) MUTATED       16     24     15     23      8
  DEL PEAK 30(19P13.3) WILD-TYPE     28     71     41     99     40
D57V6, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                           16                             28
  CLUS_2                           24                             71
  CLUS_3                           15                             41
  CLUS_4                           23                             99
  CLUS_5                            8                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(19P13.3) MUTATED       38     15     15     15
  DEL PEAK 30(19P13.3) WILD-TYPE     69     66     87     35
D57V7, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                           38                             69
  CLUS_2                           15                             66
  CLUS_3                           15                             87
  CLUS_4                           15                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(19P13.3) MUTATED       26     21     17     13      6
  DEL PEAK 30(19P13.3) WILD-TYPE     44     61     83     21     48
D57V8, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                           26                             44
  CLUS_2                           21                             61
  CLUS_3                           17                             83
  CLUS_4                           13                             21
  CLUS_5                            6                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 31(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(20P12.1) MUTATED        5     10     14
  DEL PEAK 31(20P12.1) WILD-TYPE     88    141    112
D58V1, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            5                             88
  CLUS_2                           10                            141
  CLUS_3                           14                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(20P12.1) MUTATED        8     10     11
  DEL PEAK 31(20P12.1) WILD-TYPE     85    151    105
D58V2, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            8                             85
  CLUS_2                           10                            151
  CLUS_3                           11                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(20P12.1) MUTATED        6      8      5      7      3
  DEL PEAK 31(20P12.1) WILD-TYPE     61     78     66     64     66
D58V3, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            6                             61
  CLUS_2                            8                             78
  CLUS_3                            5                             66
  CLUS_4                            7                             64
  CLUS_5                            3                             66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(20P12.1) MUTATED        6      3     10      8      2
  DEL PEAK 31(20P12.1) WILD-TYPE     48     53    104     76     54
D58V4, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            6                             48
  CLUS_2                            3                             53
  CLUS_3                           10                            104
  CLUS_4                            8                             76
  CLUS_5                            2                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(20P12.1) MUTATED        5      5      7      8      0      4
  DEL PEAK 31(20P12.1) WILD-TYPE     35     58     85     76     46     36
D58V5, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            5                             35
  CLUS_2                            5                             58
  CLUS_3                            7                             85
  CLUS_4                            8                             76
  CLUS_5                            0                             46
  CLUS_6                            4                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(20P12.1) MUTATED        5      5      5     10      4
  DEL PEAK 31(20P12.1) WILD-TYPE     39     90     51    112     44
D58V6, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            5                             39
  CLUS_2                            5                             90
  CLUS_3                            5                             51
  CLUS_4                           10                            112
  CLUS_5                            4                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(20P12.1) MUTATED       10      7      8      2
  DEL PEAK 31(20P12.1) WILD-TYPE     97     74     94     48
D58V7, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                           10                             97
  CLUS_2                            7                             74
  CLUS_3                            8                             94
  CLUS_4                            2                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(20P12.1) MUTATED        7      4      8      5      3
  DEL PEAK 31(20P12.1) WILD-TYPE     63     78     92     29     51
D58V8, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            7                             63
  CLUS_2                            4                             78
  CLUS_3                            8                             92
  CLUS_4                            5                             29
  CLUS_5                            3                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 32(22Q12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q12.1) MUTATED       18     44     17
  DEL PEAK 32(22Q12.1) WILD-TYPE     75    107    109
D59V1, multiclass
        clus
vv       DEL PEAK 32(22Q12.1) MUTATED DEL PEAK 32(22Q12.1) WILD-TYPE
  CLUS_1                           18                             75
  CLUS_2                           44                            107
  CLUS_3                           17                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q12.1) MUTATED       25     32     22
  DEL PEAK 32(22Q12.1) WILD-TYPE     68    129     94
D59V2, multiclass
        clus
vv       DEL PEAK 32(22Q12.1) MUTATED DEL PEAK 32(22Q12.1) WILD-TYPE
  CLUS_1                           25                             68
  CLUS_2                           32                            129
  CLUS_3                           22                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(22Q12.1) MUTATED       26     19      9     15     10
  DEL PEAK 32(22Q12.1) WILD-TYPE     41     67     62     56     59
D59V3, multiclass
        clus
vv       DEL PEAK 32(22Q12.1) MUTATED DEL PEAK 32(22Q12.1) WILD-TYPE
  CLUS_1                           26                             41
  CLUS_2                           19                             67
  CLUS_3                            9                             62
  CLUS_4                           15                             56
  CLUS_5                           10                             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(22Q12.1) MUTATED       16      7     29     19      8
  DEL PEAK 32(22Q12.1) WILD-TYPE     38     49     85     65     48
D59V4, multiclass
        clus
vv       DEL PEAK 32(22Q12.1) MUTATED DEL PEAK 32(22Q12.1) WILD-TYPE
  CLUS_1                           16                             38
  CLUS_2                            7                             49
  CLUS_3                           29                             85
  CLUS_4                           19                             65
  CLUS_5                            8                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(22Q12.1) MUTATED       12     16     19     15      8      8
  DEL PEAK 32(22Q12.1) WILD-TYPE     28     47     73     69     38     32
D59V5, multiclass
        clus
vv       DEL PEAK 32(22Q12.1) MUTATED DEL PEAK 32(22Q12.1) WILD-TYPE
  CLUS_1                           12                             28
  CLUS_2                           16                             47
  CLUS_3                           19                             73
  CLUS_4                           15                             69
  CLUS_5                            8                             38
  CLUS_6                            8                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(22Q12.1) MUTATED       13     19     14     27      5
  DEL PEAK 32(22Q12.1) WILD-TYPE     31     76     42     95     43
D59V6, multiclass
        clus
vv       DEL PEAK 32(22Q12.1) MUTATED DEL PEAK 32(22Q12.1) WILD-TYPE
  CLUS_1                           13                             31
  CLUS_2                           19                             76
  CLUS_3                           14                             42
  CLUS_4                           27                             95
  CLUS_5                            5                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(22Q12.1) MUTATED       27     17     19     11
  DEL PEAK 32(22Q12.1) WILD-TYPE     80     64     83     39
D59V7, multiclass
        clus
vv       DEL PEAK 32(22Q12.1) MUTATED DEL PEAK 32(22Q12.1) WILD-TYPE
  CLUS_1                           27                             80
  CLUS_2                           17                             64
  CLUS_3                           19                             83
  CLUS_4                           11                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(22Q12.1) MUTATED       15     19     20     10     10
  DEL PEAK 32(22Q12.1) WILD-TYPE     55     63     80     24     44
D59V8, multiclass
        clus
vv       DEL PEAK 32(22Q12.1) MUTATED DEL PEAK 32(22Q12.1) WILD-TYPE
  CLUS_1                           15                             55
  CLUS_2                           19                             63
  CLUS_3                           20                             80
  CLUS_4                           10                             24
  CLUS_5                           10                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 33(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(22Q13.32) MUTATED       19     48     16
  DEL PEAK 33(22Q13.32) WILD-TYPE     74    103    110
D60V1, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            19                              74
  CLUS_2                            48                             103
  CLUS_3                            16                             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(22Q13.32) MUTATED       25     40     18
  DEL PEAK 33(22Q13.32) WILD-TYPE     68    121     98
D60V2, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            25                              68
  CLUS_2                            40                             121
  CLUS_3                            18                              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(22Q13.32) MUTATED       28     24      7     14     10
  DEL PEAK 33(22Q13.32) WILD-TYPE     39     62     64     57     59
D60V3, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            28                              39
  CLUS_2                            24                              62
  CLUS_3                             7                              64
  CLUS_4                            14                              57
  CLUS_5                            10                              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(22Q13.32) MUTATED       16      6     36     16      9
  DEL PEAK 33(22Q13.32) WILD-TYPE     38     50     78     68     47
D60V4, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            16                              38
  CLUS_2                             6                              50
  CLUS_3                            36                              78
  CLUS_4                            16                              68
  CLUS_5                             9                              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(22Q13.32) MUTATED       13     22     17     15      7      8
  DEL PEAK 33(22Q13.32) WILD-TYPE     27     41     75     69     39     32
D60V5, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            13                              27
  CLUS_2                            22                              41
  CLUS_3                            17                              75
  CLUS_4                            15                              69
  CLUS_5                             7                              39
  CLUS_6                             8                              32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(22Q13.32) MUTATED       13     25     13     25      6
  DEL PEAK 33(22Q13.32) WILD-TYPE     31     70     43     97     42
D60V6, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            13                              31
  CLUS_2                            25                              70
  CLUS_3                            13                              43
  CLUS_4                            25                              97
  CLUS_5                             6                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(22Q13.32) MUTATED       29     17     23     10
  DEL PEAK 33(22Q13.32) WILD-TYPE     78     64     79     40
D60V7, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            29                              78
  CLUS_2                            17                              64
  CLUS_3                            23                              79
  CLUS_4                            10                              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(22Q13.32) MUTATED       15     25     18     10     11
  DEL PEAK 33(22Q13.32) WILD-TYPE     55     57     82     24     43
D60V8, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            15                              55
  CLUS_2                            25                              57
  CLUS_3                            18                              82
  CLUS_4                            10                              24
  CLUS_5                            11                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 34(XQ26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ26.2) MUTATED        6     42     19
  DEL PEAK 34(XQ26.2) WILD-TYPE     87    109    107
D61V1, multiclass
        clus
vv       DEL PEAK 34(XQ26.2) MUTATED DEL PEAK 34(XQ26.2) WILD-TYPE
  CLUS_1                           6                            87
  CLUS_2                          42                           109
  CLUS_3                          19                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ26.2) MUTATED        8     30     29
  DEL PEAK 34(XQ26.2) WILD-TYPE     85    131     87
D61V2, multiclass
        clus
vv       DEL PEAK 34(XQ26.2) MUTATED DEL PEAK 34(XQ26.2) WILD-TYPE
  CLUS_1                           8                            85
  CLUS_2                          30                           131
  CLUS_3                          29                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(XQ26.2) MUTATED       13     19     18      9      8
  DEL PEAK 34(XQ26.2) WILD-TYPE     54     67     53     62     61
D61V3, multiclass
        clus
vv       DEL PEAK 34(XQ26.2) MUTATED DEL PEAK 34(XQ26.2) WILD-TYPE
  CLUS_1                          13                            54
  CLUS_2                          19                            67
  CLUS_3                          18                            53
  CLUS_4                           9                            62
  CLUS_5                           8                            61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(XQ26.2) MUTATED       10      7     26     17      7
  DEL PEAK 34(XQ26.2) WILD-TYPE     44     49     88     67     49
D61V4, multiclass
        clus
vv       DEL PEAK 34(XQ26.2) MUTATED DEL PEAK 34(XQ26.2) WILD-TYPE
  CLUS_1                          10                            44
  CLUS_2                           7                            49
  CLUS_3                          26                            88
  CLUS_4                          17                            67
  CLUS_5                           7                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(XQ26.2) MUTATED        6     11     11     17     12     10
  DEL PEAK 34(XQ26.2) WILD-TYPE     34     52     81     67     34     30
D61V5, multiclass
        clus
vv       DEL PEAK 34(XQ26.2) MUTATED DEL PEAK 34(XQ26.2) WILD-TYPE
  CLUS_1                           6                            34
  CLUS_2                          11                            52
  CLUS_3                          11                            81
  CLUS_4                          17                            67
  CLUS_5                          12                            34
  CLUS_6                          10                            30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(XQ26.2) MUTATED        7     20     13     20      7
  DEL PEAK 34(XQ26.2) WILD-TYPE     37     75     43    102     41
D61V6, multiclass
        clus
vv       DEL PEAK 34(XQ26.2) MUTATED DEL PEAK 34(XQ26.2) WILD-TYPE
  CLUS_1                           7                            37
  CLUS_2                          20                            75
  CLUS_3                          13                            43
  CLUS_4                          20                           102
  CLUS_5                           7                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XQ26.2) MUTATED       25     10     20      9
  DEL PEAK 34(XQ26.2) WILD-TYPE     82     71     82     41
D61V7, multiclass
        clus
vv       DEL PEAK 34(XQ26.2) MUTATED DEL PEAK 34(XQ26.2) WILD-TYPE
  CLUS_1                          25                            82
  CLUS_2                          10                            71
  CLUS_3                          20                            82
  CLUS_4                           9                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(XQ26.2) MUTATED       17     15     17      7      8
  DEL PEAK 34(XQ26.2) WILD-TYPE     53     67     83     27     46
D61V8, multiclass
        clus
vv       DEL PEAK 34(XQ26.2) MUTATED DEL PEAK 34(XQ26.2) WILD-TYPE
  CLUS_1                          17                            53
  CLUS_2                          15                            67
  CLUS_3                          17                            83
  CLUS_4                           7                            27
  CLUS_5                           8                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
