[1] "ofn"        "-oTLUAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LUAD-TP/22552673/LUAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUAD-TP/22531212/transformed.cor.cli.txt"

nPatients in clinical file=520, in cluster file=516, common to both=516
[1]  75 516
[1] "AMP PEAK  1(1P34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE 
                          137                           379 
  AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE 
                          137                           379 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          377                           139 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          377                           139 
[1] "AMP PEAK  3(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                          169                           347 
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                          169                           347 
[1] "AMP PEAK  4(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE 
                         96                         420 
  AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE 
                         96                         420 
[1] "AMP PEAK  5(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                           333                            183 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                           333                            183 
[1] "AMP PEAK  6(5P13.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                          304                           212 
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                          304                           212 
[1] "AMP PEAK  7(5Q35.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5Q35.1) MUTATED AMP PEAK  7(5Q35.1) WILD-TYPE 
                          126                           390 
  AMP PEAK  7(5Q35.1) MUTATED AMP PEAK  7(5Q35.1) WILD-TYPE 
                          126                           390 
[1] "AMP PEAK  8(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE 
                          189                           327 
  AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE 
                          189                           327 
[1] "AMP PEAK  9(7P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(7P21.1) MUTATED AMP PEAK  9(7P21.1) WILD-TYPE 
                          284                           232 
  AMP PEAK  9(7P21.1) MUTATED AMP PEAK  9(7P21.1) WILD-TYPE 
                          284                           232 
[1] "AMP PEAK 10(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                          274                           242 
  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                          274                           242 
[1] "AMP PEAK 11(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE 
                          218                           298 
  AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE 
                          218                           298 
[1] "AMP PEAK 12(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE 
                           175                            341 
  AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE 
                           175                            341 
[1] "AMP PEAK 13(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           325                            191 
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           325                            191 
[1] "AMP PEAK 14(10P15.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(10P15.1) MUTATED AMP PEAK 14(10P15.1) WILD-TYPE 
                           142                            374 
  AMP PEAK 14(10P15.1) MUTATED AMP PEAK 14(10P15.1) WILD-TYPE 
                           142                            374 
[1] "AMP PEAK 15(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE 
                           172                            344 
  AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE 
                           172                            344 
[1] "AMP PEAK 16(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(12P12.1) MUTATED AMP PEAK 16(12P12.1) WILD-TYPE 
                           178                            338 
  AMP PEAK 16(12P12.1) MUTATED AMP PEAK 16(12P12.1) WILD-TYPE 
                           178                            338 
[1] "AMP PEAK 17(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE 
                           169                            347 
  AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE 
                           169                            347 
[1] "AMP PEAK 18(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                         169                          347 
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                         169                          347 
[1] "AMP PEAK 19(13Q33.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE 
                            76                            440 
  AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE 
                            76                            440 
[1] "AMP PEAK 20(14Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(14Q13.3) MUTATED AMP PEAK 20(14Q13.3) WILD-TYPE 
                           233                            283 
  AMP PEAK 20(14Q13.3) MUTATED AMP PEAK 20(14Q13.3) WILD-TYPE 
                           233                            283 
[1] "AMP PEAK 21(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(16P11.2) MUTATED AMP PEAK 21(16P11.2) WILD-TYPE 
                           167                            349 
  AMP PEAK 21(16P11.2) MUTATED AMP PEAK 21(16P11.2) WILD-TYPE 
                           167                            349 
[1] "AMP PEAK 22(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE 
                         227                          289 
  AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE 
                         227                          289 
[1] "AMP PEAK 23(17Q23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE 
                           249                            267 
  AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE 
                           249                            267 
[1] "AMP PEAK 24(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE 
                           105                            411 
  AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE 
                           105                            411 
[1] "AMP PEAK 25(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE 
                         139                          377 
  AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE 
                         139                          377 
[1] "AMP PEAK 26(20P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(20P11.21) MUTATED AMP PEAK 26(20P11.21) WILD-TYPE 
                            201                             315 
  AMP PEAK 26(20P11.21) MUTATED AMP PEAK 26(20P11.21) WILD-TYPE 
                            201                             315 
[1] "AMP PEAK 27(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE 
                            251                             265 
  AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE 
                            251                             265 
[1] "AMP PEAK 28(22Q11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE 
                             90                             426 
  AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE 
                             90                             426 
[1] "AMP PEAK 29(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE 
                        159                         357 
  AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE 
                        159                         357 
[1] "DEL PEAK  1(1P36.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           122                            394 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           122                            394 
[1] "DEL PEAK  2(1P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE 
                          151                           365 
  DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE 
                          151                           365 
[1] "DEL PEAK  3(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           46                           470 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           46                           470 
[1] "DEL PEAK  4(3P26.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE 
                          233                           283 
  DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE 
                          233                           283 
[1] "DEL PEAK  5(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                           248                            268 
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                           248                            268 
[1] "DEL PEAK  6(3Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE 
                          141                           375 
  DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE 
                          141                           375 
[1] "DEL PEAK  7(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE 
                        136                         380 
  DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE 
                        136                         380 
[1] "DEL PEAK  8(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE 
                          130                           386 
  DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE 
                          130                           386 
[1] "DEL PEAK  9(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                          158                           358 
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                          158                           358 
[1] "DEL PEAK 10(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                          187                           329 
  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                          187                           329 
[1] "DEL PEAK 11(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE 
                          179                           337 
  DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE 
                          179                           337 
[1] "DEL PEAK 12(5Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(5Q31.1) MUTATED DEL PEAK 12(5Q31.1) WILD-TYPE 
                          211                           305 
  DEL PEAK 12(5Q31.1) MUTATED DEL PEAK 12(5Q31.1) WILD-TYPE 
                          211                           305 
[1] "DEL PEAK 13(6Q14.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE 
                          253                           263 
  DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE 
                          253                           263 
[1] "DEL PEAK 14(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE 
                        258                         258 
  DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE 
                        258                         258 
[1] "DEL PEAK 15(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                          254                           262 
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                          254                           262 
[1] "DEL PEAK 16(8P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                           125                            391 
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                           125                            391 
[1] "DEL PEAK 17(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                        287                         229 
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                        287                         229 
[1] "DEL PEAK 18(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                          294                           222 
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                          294                           222 
[1] "DEL PEAK 19(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                           258                            258 
  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                           258                            258 
[1] "DEL PEAK 20(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE 
                           131                            385 
  DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE 
                           131                            385 
[1] "DEL PEAK 21(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           148                            368 
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           148                            368 
[1] "DEL PEAK 22(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           143                            373 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           143                            373 
[1] "DEL PEAK 23(11Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(11Q23.1) MUTATED DEL PEAK 23(11Q23.1) WILD-TYPE 
                           120                            396 
  DEL PEAK 23(11Q23.1) MUTATED DEL PEAK 23(11Q23.1) WILD-TYPE 
                           120                            396 
[1] "DEL PEAK 24(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE 
                         115                          401 
  DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE 
                         115                          401 
[1] "DEL PEAK 25(12P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE 
                           140                            376 
  DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE 
                           140                            376 
[1] "DEL PEAK 26(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE 
                          99                          417 
  DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE 
                          99                          417 
[1] "DEL PEAK 27(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE 
                            133                             383 
  DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE 
                            133                             383 
[1] "DEL PEAK 28(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE 
                            293                             223 
  DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE 
                            293                             223 
[1] "DEL PEAK 29(13Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(13Q34) MUTATED DEL PEAK 29(13Q34) WILD-TYPE 
                         241                          275 
  DEL PEAK 29(13Q34) MUTATED DEL PEAK 29(13Q34) WILD-TYPE 
                         241                          275 
[1] "DEL PEAK 30(14Q32.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE 
                            150                             366 
  DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE 
                            150                             366 
[1] "DEL PEAK 31(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE 
                           263                            253 
  DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE 
                           263                            253 
[1] "DEL PEAK 32(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                           275                            241 
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                           275                            241 
[1] "DEL PEAK 33(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE 
                           111                            405 
  DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE 
                           111                            405 
[1] "DEL PEAK 34(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE 
                           169                            347 
  DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE 
                           169                            347 
[1] "DEL PEAK 35(16Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(16Q24.3) MUTATED DEL PEAK 35(16Q24.3) WILD-TYPE 
                           188                            328 
  DEL PEAK 35(16Q24.3) MUTATED DEL PEAK 35(16Q24.3) WILD-TYPE 
                           188                            328 
[1] "DEL PEAK 36(17P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE 
                           281                            235 
  DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE 
                           281                            235 
[1] "DEL PEAK 37(18Q21.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE 
                            255                             261 
  DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE 
                            255                             261 
[1] "DEL PEAK 38(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(18Q23) MUTATED DEL PEAK 38(18Q23) WILD-TYPE 
                         249                          267 
  DEL PEAK 38(18Q23) MUTATED DEL PEAK 38(18Q23) WILD-TYPE 
                         249                          267 
[1] "DEL PEAK 39(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE 
                           276                            240 
  DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE 
                           276                            240 
[1] "DEL PEAK 40(19P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE 
                           269                            247 
  DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE 
                           269                            247 
[1] "DEL PEAK 41(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(19Q13.33) MUTATED DEL PEAK 41(19Q13.33) WILD-TYPE 
                            195                             321 
  DEL PEAK 41(19Q13.33) MUTATED DEL PEAK 41(19Q13.33) WILD-TYPE 
                            195                             321 
[1] "DEL PEAK 42(20P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(20P13) MUTATED DEL PEAK 42(20P13) WILD-TYPE 
                         130                          386 
  DEL PEAK 42(20P13) MUTATED DEL PEAK 42(20P13) WILD-TYPE 
                         130                          386 
[1] "DEL PEAK 43(20Q13.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(20Q13.12) MUTATED DEL PEAK 43(20Q13.12) WILD-TYPE 
                             82                             434 
  DEL PEAK 43(20Q13.12) MUTATED DEL PEAK 43(20Q13.12) WILD-TYPE 
                             82                             434 
[1] "DEL PEAK 44(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(21Q11.2) MUTATED DEL PEAK 44(21Q11.2) WILD-TYPE 
                           179                            337 
  DEL PEAK 44(21Q11.2) MUTATED DEL PEAK 44(21Q11.2) WILD-TYPE 
                           179                            337 
[1] "DEL PEAK 45(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE 
                            250                             266 
  DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE 
                            250                             266 
[1] "DEL PEAK 46(XP22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                          145                           371 
  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                          145                           371 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 516 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 516 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED        4      1      1
  AMP PEAK  1(1P34.3) WILD-TYPE     11      9      6
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                           4                            11
  CLUS_2                           1                             9
  CLUS_3                           1                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED        4      1      1
  AMP PEAK  1(1P34.3) WILD-TYPE     10     10      6
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           1                            10
  CLUS_3                           1                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.3) MUTATED       78     27     17     15
  AMP PEAK  1(1P34.3) WILD-TYPE     94    111    115     59
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          78                            94
  CLUS_2                          27                           111
  CLUS_3                          17                           115
  CLUS_4                          15                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       49     40     34
  AMP PEAK  1(1P34.3) WILD-TYPE    107    130     95
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          49                           107
  CLUS_2                          40                           130
  CLUS_3                          34                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P34.3) MUTATED       38      4     24     22     15
  AMP PEAK  1(1P34.3) WILD-TYPE     53     18     42     53     94
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          38                            53
  CLUS_2                           4                            18
  CLUS_3                          24                            42
  CLUS_4                          22                            53
  CLUS_5                          15                            94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       52     43      8
  AMP PEAK  1(1P34.3) WILD-TYPE    115     90     55
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          52                           115
  CLUS_2                          43                            90
  CLUS_3                           8                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P34.3) MUTATED       47     31     13     34     10
  AMP PEAK  1(1P34.3) WILD-TYPE     83     88     77     81     48
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          47                            83
  CLUS_2                          31                            88
  CLUS_3                          13                            77
  CLUS_4                          34                            81
  CLUS_5                          10                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P34.3) MUTATED       23     29     40      8     11      9
  AMP PEAK  1(1P34.3) WILD-TYPE     55     81     57     40     42     40
                               vv
clus                            CLUS_7
  AMP PEAK  1(1P34.3) MUTATED       15
  AMP PEAK  1(1P34.3) WILD-TYPE     62
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          23                            55
  CLUS_2                          29                            81
  CLUS_3                          40                            57
  CLUS_4                           8                            40
  CLUS_5                          11                            42
  CLUS_6                           9                            40
  CLUS_7                          15                            62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       46     56     34
  AMP PEAK  1(1P34.3) WILD-TYPE    140    165     69
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          46                           140
  CLUS_2                          56                           165
  CLUS_3                          34                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P34.3) MUTATED       14      8     37     28     39     10
  AMP PEAK  1(1P34.3) WILD-TYPE     57     31    108    102     57     19
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          14                            57
  CLUS_2                           8                            31
  CLUS_3                          37                           108
  CLUS_4                          28                           102
  CLUS_5                          39                            57
  CLUS_6                          10                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P34.3) MUTATED       14     29     27     14     14     22
  AMP PEAK  1(1P34.3) WILD-TYPE     45     61     68     29     56     55
D1V11, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          14                            45
  CLUS_2                          29                            61
  CLUS_3                          27                            68
  CLUS_4                          14                            29
  CLUS_5                          14                            56
  CLUS_6                          22                            55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       20     66     34
  AMP PEAK  1(1P34.3) WILD-TYPE     84    172     58
D1V12, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          20                            84
  CLUS_2                          66                           172
  CLUS_3                          34                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED        9      8      3
  AMP PEAK  2(1Q21.3) WILD-TYPE      6      2      4
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                           9                             6
  CLUS_2                           8                             2
  CLUS_3                           3                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED        9      8      3
  AMP PEAK  2(1Q21.3) WILD-TYPE      5      3      4
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                           9                             5
  CLUS_2                           8                             3
  CLUS_3                           3                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED      141     98     71     67
  AMP PEAK  2(1Q21.3) WILD-TYPE     31     40     61      7
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         141                            31
  CLUS_2                          98                            40
  CLUS_3                          71                            61
  CLUS_4                          67                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      131    134     71
  AMP PEAK  2(1Q21.3) WILD-TYPE     25     36     58
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         131                            25
  CLUS_2                         134                            36
  CLUS_3                          71                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       74     17     60     58     66
  AMP PEAK  2(1Q21.3) WILD-TYPE     17      5      6     17     43
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          74                            17
  CLUS_2                          17                             5
  CLUS_3                          60                             6
  CLUS_4                          58                            17
  CLUS_5                          66                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      135     97     43
  AMP PEAK  2(1Q21.3) WILD-TYPE     32     36     20
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         135                            32
  CLUS_2                          97                            36
  CLUS_3                          43                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED      106     82     54     95     37
  AMP PEAK  2(1Q21.3) WILD-TYPE     24     37     36     20     21
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         106                            24
  CLUS_2                          82                            37
  CLUS_3                          54                            36
  CLUS_4                          95                            20
  CLUS_5                          37                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       54     78     69     45     45     38
  AMP PEAK  2(1Q21.3) WILD-TYPE     24     32     28      3      8     11
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q21.3) MUTATED       45
  AMP PEAK  2(1Q21.3) WILD-TYPE     32
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          54                            24
  CLUS_2                          78                            32
  CLUS_3                          69                            28
  CLUS_4                          45                             3
  CLUS_5                          45                             8
  CLUS_6                          38                            11
  CLUS_7                          45                            32
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      124    177     71
  AMP PEAK  2(1Q21.3) WILD-TYPE     62     44     32
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         124                            62
  CLUS_2                         177                            44
  CLUS_3                          71                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       55     37    112     75     76     17
  AMP PEAK  2(1Q21.3) WILD-TYPE     16      2     33     55     20     12
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          55                            16
  CLUS_2                          37                             2
  CLUS_3                         112                            33
  CLUS_4                          75                            55
  CLUS_5                          76                            20
  CLUS_6                          17                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       38     78     68     27     52     55
  AMP PEAK  2(1Q21.3) WILD-TYPE     21     12     27     16     18     22
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          38                            21
  CLUS_2                          78                            12
  CLUS_3                          68                            27
  CLUS_4                          27                            16
  CLUS_5                          52                            18
  CLUS_6                          55                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       70    182     66
  AMP PEAK  2(1Q21.3) WILD-TYPE     34     56     26
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          70                            34
  CLUS_2                         182                            56
  CLUS_3                          66                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED        0      6      4
  AMP PEAK  3(3Q26.2) WILD-TYPE     15      4      3
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                           6                             4
  CLUS_3                           4                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED        0      6      4
  AMP PEAK  3(3Q26.2) WILD-TYPE     14      5      3
D3V2, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                             5
  CLUS_3                           4                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.2) MUTATED       52     80     14     23
  AMP PEAK  3(3Q26.2) WILD-TYPE    120     58    118     51
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          52                           120
  CLUS_2                          80                            58
  CLUS_3                          14                           118
  CLUS_4                          23                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       71     51     23
  AMP PEAK  3(3Q26.2) WILD-TYPE     85    119    106
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          71                            85
  CLUS_2                          51                           119
  CLUS_3                          23                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3Q26.2) MUTATED       28      7     17     40     30
  AMP PEAK  3(3Q26.2) WILD-TYPE     63     15     49     35     79
D3V5, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          28                            63
  CLUS_2                           7                            15
  CLUS_3                          17                            49
  CLUS_4                          40                            35
  CLUS_5                          30                            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       43     60     19
  AMP PEAK  3(3Q26.2) WILD-TYPE    124     73     44
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          43                           124
  CLUS_2                          60                            73
  CLUS_3                          19                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3Q26.2) MUTATED       51      7     41     55     15
  AMP PEAK  3(3Q26.2) WILD-TYPE     79    112     49     60     43
D3V7, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          51                            79
  CLUS_2                           7                           112
  CLUS_3                          41                            49
  CLUS_4                          55                            60
  CLUS_5                          15                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.2) MUTATED        8     39     64      5     17     19
  AMP PEAK  3(3Q26.2) WILD-TYPE     70     71     33     43     36     30
                               vv
clus                            CLUS_7
  AMP PEAK  3(3Q26.2) MUTATED       17
  AMP PEAK  3(3Q26.2) WILD-TYPE     60
D3V8, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           8                            70
  CLUS_2                          39                            71
  CLUS_3                          64                            33
  CLUS_4                           5                            43
  CLUS_5                          17                            36
  CLUS_6                          19                            30
  CLUS_7                          17                            60
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       39    102     26
  AMP PEAK  3(3Q26.2) WILD-TYPE    147    119     77
D3V9, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          39                           147
  CLUS_2                         102                           119
  CLUS_3                          26                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.2) MUTATED       11     14     53     34     52      3
  AMP PEAK  3(3Q26.2) WILD-TYPE     60     25     92     96     44     26
D3V10, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          11                            60
  CLUS_2                          14                            25
  CLUS_3                          53                            92
  CLUS_4                          34                            96
  CLUS_5                          52                            44
  CLUS_6                           3                            26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.2) MUTATED        6     35     42     10     21     26
  AMP PEAK  3(3Q26.2) WILD-TYPE     53     55     53     33     49     51
D3V11, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           6                            53
  CLUS_2                          35                            55
  CLUS_3                          42                            53
  CLUS_4                          10                            33
  CLUS_5                          21                            49
  CLUS_6                          26                            51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       16     94     30
  AMP PEAK  3(3Q26.2) WILD-TYPE     88    144     62
D3V12, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          16                            88
  CLUS_2                          94                           144
  CLUS_3                          30                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED        4      2      4
  AMP PEAK  4(4Q12) WILD-TYPE     11      8      3
D4V1, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         4                          11
  CLUS_2                         2                           8
  CLUS_3                         4                           3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED        4      2      4
  AMP PEAK  4(4Q12) WILD-TYPE     10      9      3
D4V2, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         4                          10
  CLUS_2                         2                           9
  CLUS_3                         4                           3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4Q12) MUTATED       46     34      7      9
  AMP PEAK  4(4Q12) WILD-TYPE    126    104    125     65
D4V3, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                        46                         126
  CLUS_2                        34                         104
  CLUS_3                         7                         125
  CLUS_4                         9                          65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED       37     34     11
  AMP PEAK  4(4Q12) WILD-TYPE    119    136    118
D4V4, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                        37                         119
  CLUS_2                        34                         136
  CLUS_3                        11                         118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(4Q12) MUTATED       18      2     12     17     22
  AMP PEAK  4(4Q12) WILD-TYPE     73     20     54     58     87
D4V5, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                        18                          73
  CLUS_2                         2                          20
  CLUS_3                        12                          54
  CLUS_4                        17                          58
  CLUS_5                        22                          87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED       24     36     11
  AMP PEAK  4(4Q12) WILD-TYPE    143     97     52
D4V6, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                        24                         143
  CLUS_2                        36                          97
  CLUS_3                        11                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(4Q12) MUTATED       38     11     15     26      6
  AMP PEAK  4(4Q12) WILD-TYPE     92    108     75     89     52
D4V7, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                        38                          92
  CLUS_2                        11                         108
  CLUS_3                        15                          75
  CLUS_4                        26                          89
  CLUS_5                         6                          52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  4(4Q12) MUTATED        8     29     29      5      9     11      5
  AMP PEAK  4(4Q12) WILD-TYPE     70     81     68     43     44     38     72
D4V8, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         8                          70
  CLUS_2                        29                          81
  CLUS_3                        29                          68
  CLUS_4                         5                          43
  CLUS_5                         9                          44
  CLUS_6                        11                          38
  CLUS_7                         5                          72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED       20     54     22
  AMP PEAK  4(4Q12) WILD-TYPE    166    167     81
D4V9, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                        20                         166
  CLUS_2                        54                         167
  CLUS_3                        22                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(4Q12) MUTATED        8      7     39     12     21      9
  AMP PEAK  4(4Q12) WILD-TYPE     63     32    106    118     75     20
D4V10, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         8                          63
  CLUS_2                         7                          32
  CLUS_3                        39                         106
  CLUS_4                        12                         118
  CLUS_5                        21                          75
  CLUS_6                         9                          20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(4Q12) MUTATED        8     17     19      9     10     16
  AMP PEAK  4(4Q12) WILD-TYPE     51     73     76     34     60     61
D4V11, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         8                          51
  CLUS_2                        17                          73
  CLUS_3                        19                          76
  CLUS_4                         9                          34
  CLUS_5                        10                          60
  CLUS_6                        16                          61
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q12) MUTATED        8     54     17
  AMP PEAK  4(4Q12) WILD-TYPE     96    184     75
D4V12, multiclass
        clus
vv       AMP PEAK  4(4Q12) MUTATED AMP PEAK  4(4Q12) WILD-TYPE
  CLUS_1                         8                          96
  CLUS_2                        54                         184
  CLUS_3                        17                          75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P15.33) MUTATED       10      5      5
  AMP PEAK  5(5P15.33) WILD-TYPE      5      5      2
D5V1, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           10                              5
  CLUS_2                            5                              5
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P15.33) MUTATED        9      6      5
  AMP PEAK  5(5P15.33) WILD-TYPE      5      5      2
D5V2, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                            9                              5
  CLUS_2                            6                              5
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5P15.33) MUTATED      157     78     45     53
  AMP PEAK  5(5P15.33) WILD-TYPE     15     60     87     21
D5V3, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                          157                             15
  CLUS_2                           78                             60
  CLUS_3                           45                             87
  CLUS_4                           53                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P15.33) MUTATED      114    113     70
  AMP PEAK  5(5P15.33) WILD-TYPE     42     57     59
D5V4, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                          114                             42
  CLUS_2                          113                             57
  CLUS_3                           70                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5P15.33) MUTATED       70     14     44     49     65
  AMP PEAK  5(5P15.33) WILD-TYPE     21      8     22     26     44
D5V5, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           70                             21
  CLUS_2                           14                              8
  CLUS_3                           44                             22
  CLUS_4                           49                             26
  CLUS_5                           65                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P15.33) MUTATED      110     87     45
  AMP PEAK  5(5P15.33) WILD-TYPE     57     46     18
D5V6, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                          110                             57
  CLUS_2                           87                             46
  CLUS_3                           45                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5P15.33) MUTATED      111     63     38     81     37
  AMP PEAK  5(5P15.33) WILD-TYPE     19     56     52     34     21
D5V7, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                          111                             19
  CLUS_2                           63                             56
  CLUS_3                           38                             52
  CLUS_4                           81                             34
  CLUS_5                           37                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5P15.33) MUTATED       48     81     77     22     35     29
  AMP PEAK  5(5P15.33) WILD-TYPE     30     29     20     26     18     20
                                vv
clus                             CLUS_7
  AMP PEAK  5(5P15.33) MUTATED       38
  AMP PEAK  5(5P15.33) WILD-TYPE     39
D5V8, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           48                             30
  CLUS_2                           81                             29
  CLUS_3                           77                             20
  CLUS_4                           22                             26
  CLUS_5                           35                             18
  CLUS_6                           29                             20
  CLUS_7                           38                             39
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P15.33) MUTATED      105    160     67
  AMP PEAK  5(5P15.33) WILD-TYPE     81     61     36
D5V9, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                          105                             81
  CLUS_2                          160                             61
  CLUS_3                           67                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5P15.33) MUTATED       45     26    104     66     73     18
  AMP PEAK  5(5P15.33) WILD-TYPE     26     13     41     64     23     11
D5V10, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           45                             26
  CLUS_2                           26                             13
  CLUS_3                          104                             41
  CLUS_4                           66                             64
  CLUS_5                           73                             23
  CLUS_6                           18                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5P15.33) MUTATED       25     72     65     26     42     56
  AMP PEAK  5(5P15.33) WILD-TYPE     34     18     30     17     28     21
D5V11, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           25                             34
  CLUS_2                           72                             18
  CLUS_3                           65                             30
  CLUS_4                           26                             17
  CLUS_5                           42                             28
  CLUS_6                           56                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P15.33) MUTATED       46    179     61
  AMP PEAK  5(5P15.33) WILD-TYPE     58     59     31
D5V12, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           46                             58
  CLUS_2                          179                             59
  CLUS_3                           61                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(5P13.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P13.1) MUTATED        9      6      4
  AMP PEAK  6(5P13.1) WILD-TYPE      6      4      3
D6V1, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                           9                             6
  CLUS_2                           6                             4
  CLUS_3                           4                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P13.1) MUTATED        8      7      4
  AMP PEAK  6(5P13.1) WILD-TYPE      6      4      3
D6V2, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                           8                             6
  CLUS_2                           7                             4
  CLUS_3                           4                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P13.1) MUTATED      142     69     40     53
  AMP PEAK  6(5P13.1) WILD-TYPE     30     69     92     21
D6V3, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                         142                            30
  CLUS_2                          69                            69
  CLUS_3                          40                            92
  CLUS_4                          53                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P13.1) MUTATED      111    101     62
  AMP PEAK  6(5P13.1) WILD-TYPE     45     69     67
D6V4, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                         111                            45
  CLUS_2                         101                            69
  CLUS_3                          62                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P13.1) MUTATED       64     11     41     44     62
  AMP PEAK  6(5P13.1) WILD-TYPE     27     11     25     31     47
D6V5, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          64                            27
  CLUS_2                          11                            11
  CLUS_3                          41                            25
  CLUS_4                          44                            31
  CLUS_5                          62                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P13.1) MUTATED       99     81     42
  AMP PEAK  6(5P13.1) WILD-TYPE     68     52     21
D6V6, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          99                            68
  CLUS_2                          81                            52
  CLUS_3                          42                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P13.1) MUTATED       93     56     33     83     36
  AMP PEAK  6(5P13.1) WILD-TYPE     37     63     57     32     22
D6V7, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          93                            37
  CLUS_2                          56                            63
  CLUS_3                          33                            57
  CLUS_4                          83                            32
  CLUS_5                          36                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P13.1) MUTATED       42     71     74     18     37     25
  AMP PEAK  6(5P13.1) WILD-TYPE     36     39     23     30     16     24
                               vv
clus                            CLUS_7
  AMP PEAK  6(5P13.1) MUTATED       34
  AMP PEAK  6(5P13.1) WILD-TYPE     43
D6V8, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          42                            36
  CLUS_2                          71                            39
  CLUS_3                          74                            23
  CLUS_4                          18                            30
  CLUS_5                          37                            16
  CLUS_6                          25                            24
  CLUS_7                          34                            43
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P13.1) MUTATED       91    151     61
  AMP PEAK  6(5P13.1) WILD-TYPE     95     70     42
D6V9, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          91                            95
  CLUS_2                         151                            70
  CLUS_3                          61                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P13.1) MUTATED       39     26     96     57     68     17
  AMP PEAK  6(5P13.1) WILD-TYPE     32     13     49     73     28     12
D6V10, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          39                            32
  CLUS_2                          26                            13
  CLUS_3                          96                            49
  CLUS_4                          57                            73
  CLUS_5                          68                            28
  CLUS_6                          17                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P13.1) MUTATED       23     71     54     25     39     50
  AMP PEAK  6(5P13.1) WILD-TYPE     36     19     41     18     31     27
D6V11, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          23                            36
  CLUS_2                          71                            19
  CLUS_3                          54                            41
  CLUS_4                          25                            18
  CLUS_5                          39                            31
  CLUS_6                          50                            27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P13.1) MUTATED       40    169     53
  AMP PEAK  6(5P13.1) WILD-TYPE     64     69     39
D6V12, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          40                            64
  CLUS_2                         169                            69
  CLUS_3                          53                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(5Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.1) MUTATED        7      3      1
  AMP PEAK  7(5Q35.1) WILD-TYPE      8      7      6
D7V1, multiclass
        clus
vv       AMP PEAK  7(5Q35.1) MUTATED AMP PEAK  7(5Q35.1) WILD-TYPE
  CLUS_1                           7                             8
  CLUS_2                           3                             7
  CLUS_3                           1                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.1) MUTATED        7      3      1
  AMP PEAK  7(5Q35.1) WILD-TYPE      7      8      6
D7V2, multiclass
        clus
vv       AMP PEAK  7(5Q35.1) MUTATED AMP PEAK  7(5Q35.1) WILD-TYPE
  CLUS_1                           7                             7
  CLUS_2                           3                             8
  CLUS_3                           1                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5Q35.1) MUTATED       59     22     33     12
  AMP PEAK  7(5Q35.1) WILD-TYPE    113    116     99     62
D7V3, multiclass
        clus
vv       AMP PEAK  7(5Q35.1) MUTATED AMP PEAK  7(5Q35.1) WILD-TYPE
  CLUS_1                          59                           113
  CLUS_2                          22                           116
  CLUS_3                          33                            99
  CLUS_4                          12                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.1) MUTATED       30     45     39
  AMP PEAK  7(5Q35.1) WILD-TYPE    126    125     90
D7V4, multiclass
        clus
vv       AMP PEAK  7(5Q35.1) MUTATED AMP PEAK  7(5Q35.1) WILD-TYPE
  CLUS_1                          30                           126
  CLUS_2                          45                           125
  CLUS_3                          39                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5Q35.1) MUTATED       27      4     26      6     24
  AMP PEAK  7(5Q35.1) WILD-TYPE     64     18     40     69     85
D7V5, multiclass
        clus
vv       AMP PEAK  7(5Q35.1) MUTATED AMP PEAK  7(5Q35.1) WILD-TYPE
  CLUS_1                          27                            64
  CLUS_2                           4                            18
  CLUS_3                          26                            40
  CLUS_4                           6                            69
  CLUS_5                          24                            85
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.1) MUTATED       56     14     17
  AMP PEAK  7(5Q35.1) WILD-TYPE    111    119     46
D7V6, multiclass
        clus
vv       AMP PEAK  7(5Q35.1) MUTATED AMP PEAK  7(5Q35.1) WILD-TYPE
  CLUS_1                          56                           111
  CLUS_2                          14                           119
  CLUS_3                          17                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5Q35.1) MUTATED       31     44     11     22     16
  AMP PEAK  7(5Q35.1) WILD-TYPE     99     75     79     93     42
D7V7, multiclass
        clus
vv       AMP PEAK  7(5Q35.1) MUTATED AMP PEAK  7(5Q35.1) WILD-TYPE
  CLUS_1                          31                            99
  CLUS_2                          44                            75
  CLUS_3                          11                            79
  CLUS_4                          22                            93
  CLUS_5                          16                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5Q35.1) MUTATED       33     23     24     13      9      5
  AMP PEAK  7(5Q35.1) WILD-TYPE     45     87     73     35     44     44
                               vv
clus                            CLUS_7
  AMP PEAK  7(5Q35.1) MUTATED       17
  AMP PEAK  7(5Q35.1) WILD-TYPE     60
D7V8, multiclass
        clus
vv       AMP PEAK  7(5Q35.1) MUTATED AMP PEAK  7(5Q35.1) WILD-TYPE
  CLUS_1                          33                            45
  CLUS_2                          23                            87
  CLUS_3                          24                            73
  CLUS_4                          13                            35
  CLUS_5                           9                            44
  CLUS_6                           5                            44
  CLUS_7                          17                            60
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.1) MUTATED       61     36     29
  AMP PEAK  7(5Q35.1) WILD-TYPE    125    185     74
D7V9, multiclass
        clus
vv       AMP PEAK  7(5Q35.1) MUTATED AMP PEAK  7(5Q35.1) WILD-TYPE
  CLUS_1                          61                           125
  CLUS_2                          36                           185
  CLUS_3                          29                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5Q35.1) MUTATED       35     11     24     32     12     12
  AMP PEAK  7(5Q35.1) WILD-TYPE     36     28    121     98     84     17
D7V10, multiclass
        clus
vv       AMP PEAK  7(5Q35.1) MUTATED AMP PEAK  7(5Q35.1) WILD-TYPE
  CLUS_1                          35                            36
  CLUS_2                          11                            28
  CLUS_3                          24                           121
  CLUS_4                          32                            98
  CLUS_5                          12                            84
  CLUS_6                          12                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5Q35.1) MUTATED       20     12     21     15     20     19
  AMP PEAK  7(5Q35.1) WILD-TYPE     39     78     74     28     50     58
D7V11, multiclass
        clus
vv       AMP PEAK  7(5Q35.1) MUTATED AMP PEAK  7(5Q35.1) WILD-TYPE
  CLUS_1                          20                            39
  CLUS_2                          12                            78
  CLUS_3                          21                            74
  CLUS_4                          15                            28
  CLUS_5                          20                            50
  CLUS_6                          19                            58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.1) MUTATED       33     46     28
  AMP PEAK  7(5Q35.1) WILD-TYPE     71    192     64
D7V12, multiclass
        clus
vv       AMP PEAK  7(5Q35.1) MUTATED AMP PEAK  7(5Q35.1) WILD-TYPE
  CLUS_1                          33                            71
  CLUS_2                          46                           192
  CLUS_3                          28                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED        5      2      4
  AMP PEAK  8(6P21.1) WILD-TYPE     10      8      3
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                           5                            10
  CLUS_2                           2                             8
  CLUS_3                           4                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED        5      2      4
  AMP PEAK  8(6P21.1) WILD-TYPE      9      9      3
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           2                             9
  CLUS_3                           4                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P21.1) MUTATED       69     49     30     41
  AMP PEAK  8(6P21.1) WILD-TYPE    103     89    102     33
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          69                           103
  CLUS_2                          49                            89
  CLUS_3                          30                           102
  CLUS_4                          41                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       75     68     26
  AMP PEAK  8(6P21.1) WILD-TYPE     81    102    103
D8V4, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          75                            81
  CLUS_2                          68                           102
  CLUS_3                          26                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P21.1) MUTATED       30      7     32     29     34
  AMP PEAK  8(6P21.1) WILD-TYPE     61     15     34     46     75
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          30                            61
  CLUS_2                           7                            15
  CLUS_3                          32                            34
  CLUS_4                          29                            46
  CLUS_5                          34                            75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       65     42     25
  AMP PEAK  8(6P21.1) WILD-TYPE    102     91     38
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          65                           102
  CLUS_2                          42                            91
  CLUS_3                          25                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P21.1) MUTATED       49     41     21     57     20
  AMP PEAK  8(6P21.1) WILD-TYPE     81     78     69     58     38
D8V7, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          49                            81
  CLUS_2                          41                            78
  CLUS_3                          21                            69
  CLUS_4                          57                            58
  CLUS_5                          20                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P21.1) MUTATED       25     36     44     23     25     17
  AMP PEAK  8(6P21.1) WILD-TYPE     53     74     53     25     28     32
                               vv
clus                            CLUS_7
  AMP PEAK  8(6P21.1) MUTATED       18
  AMP PEAK  8(6P21.1) WILD-TYPE     59
D8V8, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          25                            53
  CLUS_2                          36                            74
  CLUS_3                          44                            53
  CLUS_4                          23                            25
  CLUS_5                          25                            28
  CLUS_6                          17                            32
  CLUS_7                          18                            59
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       57     94     34
  AMP PEAK  8(6P21.1) WILD-TYPE    129    127     69
D8V9, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          57                           129
  CLUS_2                          94                           127
  CLUS_3                          34                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P21.1) MUTATED       22     15     65     32     42      9
  AMP PEAK  8(6P21.1) WILD-TYPE     49     24     80     98     54     20
D8V10, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          22                            49
  CLUS_2                          15                            24
  CLUS_3                          65                            80
  CLUS_4                          32                            98
  CLUS_5                          42                            54
  CLUS_6                           9                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P21.1) MUTATED       16     50     32     17     19     25
  AMP PEAK  8(6P21.1) WILD-TYPE     43     40     63     26     51     52
D8V11, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          16                            43
  CLUS_2                          50                            40
  CLUS_3                          32                            63
  CLUS_4                          17                            26
  CLUS_5                          19                            51
  CLUS_6                          25                            52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       28     94     37
  AMP PEAK  8(6P21.1) WILD-TYPE     76    144     55
D8V12, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          28                            76
  CLUS_2                          94                           144
  CLUS_3                          37                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(7P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P21.1) MUTATED       10      5      4
  AMP PEAK  9(7P21.1) WILD-TYPE      5      5      3
D9V1, multiclass
        clus
vv       AMP PEAK  9(7P21.1) MUTATED AMP PEAK  9(7P21.1) WILD-TYPE
  CLUS_1                          10                             5
  CLUS_2                           5                             5
  CLUS_3                           4                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P21.1) MUTATED        9      6      4
  AMP PEAK  9(7P21.1) WILD-TYPE      5      5      3
D9V2, multiclass
        clus
vv       AMP PEAK  9(7P21.1) MUTATED AMP PEAK  9(7P21.1) WILD-TYPE
  CLUS_1                           9                             5
  CLUS_2                           6                             5
  CLUS_3                           4                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7P21.1) MUTATED      146     84     26     28
  AMP PEAK  9(7P21.1) WILD-TYPE     26     54    106     46
D9V3, multiclass
        clus
vv       AMP PEAK  9(7P21.1) MUTATED AMP PEAK  9(7P21.1) WILD-TYPE
  CLUS_1                         146                            26
  CLUS_2                          84                            54
  CLUS_3                          26                           106
  CLUS_4                          28                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P21.1) MUTATED       84    103     61
  AMP PEAK  9(7P21.1) WILD-TYPE     72     67     68
D9V4, multiclass
        clus
vv       AMP PEAK  9(7P21.1) MUTATED AMP PEAK  9(7P21.1) WILD-TYPE
  CLUS_1                          84                            72
  CLUS_2                         103                            67
  CLUS_3                          61                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(7P21.1) MUTATED       63     13     31     42     54
  AMP PEAK  9(7P21.1) WILD-TYPE     28      9     35     33     55
D9V5, multiclass
        clus
vv       AMP PEAK  9(7P21.1) MUTATED AMP PEAK  9(7P21.1) WILD-TYPE
  CLUS_1                          63                            28
  CLUS_2                          13                             9
  CLUS_3                          31                            35
  CLUS_4                          42                            33
  CLUS_5                          54                            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P21.1) MUTATED       92     82     29
  AMP PEAK  9(7P21.1) WILD-TYPE     75     51     34
D9V6, multiclass
        clus
vv       AMP PEAK  9(7P21.1) MUTATED AMP PEAK  9(7P21.1) WILD-TYPE
  CLUS_1                          92                            75
  CLUS_2                          82                            51
  CLUS_3                          29                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(7P21.1) MUTATED      106     43     45     54     32
  AMP PEAK  9(7P21.1) WILD-TYPE     24     76     45     61     26
D9V7, multiclass
        clus
vv       AMP PEAK  9(7P21.1) MUTATED AMP PEAK  9(7P21.1) WILD-TYPE
  CLUS_1                         106                            24
  CLUS_2                          43                            76
  CLUS_3                          45                            45
  CLUS_4                          54                            61
  CLUS_5                          32                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(7P21.1) MUTATED       37     82     60     11     26     29
  AMP PEAK  9(7P21.1) WILD-TYPE     41     28     37     37     27     20
                               vv
clus                            CLUS_7
  AMP PEAK  9(7P21.1) MUTATED       35
  AMP PEAK  9(7P21.1) WILD-TYPE     42
D9V8, multiclass
        clus
vv       AMP PEAK  9(7P21.1) MUTATED AMP PEAK  9(7P21.1) WILD-TYPE
  CLUS_1                          37                            41
  CLUS_2                          82                            28
  CLUS_3                          60                            37
  CLUS_4                          11                            37
  CLUS_5                          26                            27
  CLUS_6                          29                            20
  CLUS_7                          35                            42
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P21.1) MUTATED       81    128     71
  AMP PEAK  9(7P21.1) WILD-TYPE    105     93     32
D9V9, multiclass
        clus
vv       AMP PEAK  9(7P21.1) MUTATED AMP PEAK  9(7P21.1) WILD-TYPE
  CLUS_1                          81                           105
  CLUS_2                         128                            93
  CLUS_3                          71                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(7P21.1) MUTATED       25     20     98     61     56     20
  AMP PEAK  9(7P21.1) WILD-TYPE     46     19     47     69     40      9
D9V10, multiclass
        clus
vv       AMP PEAK  9(7P21.1) MUTATED AMP PEAK  9(7P21.1) WILD-TYPE
  CLUS_1                          25                            46
  CLUS_2                          20                            19
  CLUS_3                          98                            47
  CLUS_4                          61                            69
  CLUS_5                          56                            40
  CLUS_6                          20                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(7P21.1) MUTATED       22     48     55     27     39     51
  AMP PEAK  9(7P21.1) WILD-TYPE     37     42     40     16     31     26
D9V11, multiclass
        clus
vv       AMP PEAK  9(7P21.1) MUTATED AMP PEAK  9(7P21.1) WILD-TYPE
  CLUS_1                          22                            37
  CLUS_2                          48                            42
  CLUS_3                          55                            40
  CLUS_4                          27                            16
  CLUS_5                          39                            31
  CLUS_6                          51                            26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P21.1) MUTATED       39    141     62
  AMP PEAK  9(7P21.1) WILD-TYPE     65     97     30
D9V12, multiclass
        clus
vv       AMP PEAK  9(7P21.1) MUTATED AMP PEAK  9(7P21.1) WILD-TYPE
  CLUS_1                          39                            65
  CLUS_2                         141                            97
  CLUS_3                          62                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED        9      5      3
  AMP PEAK 10(7P11.2) WILD-TYPE      6      5      4
D10V1, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                           9                             6
  CLUS_2                           5                             5
  CLUS_3                           3                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED        8      6      3
  AMP PEAK 10(7P11.2) WILD-TYPE      6      5      4
D10V2, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                           8                             6
  CLUS_2                           6                             5
  CLUS_3                           3                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P11.2) MUTATED      140     85     23     26
  AMP PEAK 10(7P11.2) WILD-TYPE     32     53    109     48
D10V3, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                         140                            32
  CLUS_2                          85                            53
  CLUS_3                          23                           109
  CLUS_4                          26                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED       84     99     57
  AMP PEAK 10(7P11.2) WILD-TYPE     72     71     72
D10V4, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          84                            72
  CLUS_2                          99                            71
  CLUS_3                          57                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7P11.2) MUTATED       59     11     29     44     54
  AMP PEAK 10(7P11.2) WILD-TYPE     32     11     37     31     55
D10V5, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          59                            32
  CLUS_2                          11                            11
  CLUS_3                          29                            37
  CLUS_4                          44                            31
  CLUS_5                          54                            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED       83     85     29
  AMP PEAK 10(7P11.2) WILD-TYPE     84     48     34
D10V6, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          83                            84
  CLUS_2                          85                            48
  CLUS_3                          29                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7P11.2) MUTATED      105     36     49     49     31
  AMP PEAK 10(7P11.2) WILD-TYPE     25     83     41     66     27
D10V7, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                         105                            25
  CLUS_2                          36                            83
  CLUS_3                          49                            41
  CLUS_4                          49                            66
  CLUS_5                          31                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7P11.2) MUTATED       31     82     57      9     24     32
  AMP PEAK 10(7P11.2) WILD-TYPE     47     28     40     39     29     17
                               vv
clus                            CLUS_7
  AMP PEAK 10(7P11.2) MUTATED       35
  AMP PEAK 10(7P11.2) WILD-TYPE     42
D10V8, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          31                            47
  CLUS_2                          82                            28
  CLUS_3                          57                            40
  CLUS_4                           9                            39
  CLUS_5                          24                            29
  CLUS_6                          32                            17
  CLUS_7                          35                            42
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED       70    130     70
  AMP PEAK 10(7P11.2) WILD-TYPE    116     91     33
D10V9, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          70                           116
  CLUS_2                         130                            91
  CLUS_3                          70                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7P11.2) MUTATED       19     22    101     55     54     19
  AMP PEAK 10(7P11.2) WILD-TYPE     52     17     44     75     42     10
D10V10, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          19                            52
  CLUS_2                          22                            17
  CLUS_3                         101                            44
  CLUS_4                          55                            75
  CLUS_5                          54                            42
  CLUS_6                          19                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7P11.2) MUTATED       17     47     53     25     38     54
  AMP PEAK 10(7P11.2) WILD-TYPE     42     43     42     18     32     23
D10V11, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          17                            42
  CLUS_2                          47                            43
  CLUS_3                          53                            42
  CLUS_4                          25                            18
  CLUS_5                          38                            32
  CLUS_6                          54                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED       33    143     58
  AMP PEAK 10(7P11.2) WILD-TYPE     71     95     34
D10V12, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          33                            71
  CLUS_2                         143                            95
  CLUS_3                          58                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED        7      6      2
  AMP PEAK 11(7Q31.2) WILD-TYPE      8      4      5
D11V1, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                           7                             8
  CLUS_2                           6                             4
  CLUS_3                           2                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED        6      7      2
  AMP PEAK 11(7Q31.2) WILD-TYPE      8      4      5
D11V2, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                           6                             8
  CLUS_2                           7                             4
  CLUS_3                           2                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q31.2) MUTATED      112     62     17     27
  AMP PEAK 11(7Q31.2) WILD-TYPE     60     76    115     47
D11V3, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                         112                            60
  CLUS_2                          62                            76
  CLUS_3                          17                           115
  CLUS_4                          27                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED       64     77     49
  AMP PEAK 11(7Q31.2) WILD-TYPE     92     93     80
D11V4, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          64                            92
  CLUS_2                          77                            93
  CLUS_3                          49                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7Q31.2) MUTATED       44      8     21     42     44
  AMP PEAK 11(7Q31.2) WILD-TYPE     47     14     45     33     65
D11V5, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          44                            47
  CLUS_2                           8                            14
  CLUS_3                          21                            45
  CLUS_4                          42                            33
  CLUS_5                          44                            65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED       67     67     25
  AMP PEAK 11(7Q31.2) WILD-TYPE    100     66     38
D11V6, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          67                           100
  CLUS_2                          67                            66
  CLUS_3                          25                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7Q31.2) MUTATED       88     25     38     37     26
  AMP PEAK 11(7Q31.2) WILD-TYPE     42     94     52     78     32
D11V7, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          88                            42
  CLUS_2                          25                            94
  CLUS_3                          38                            52
  CLUS_4                          37                            78
  CLUS_5                          26                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7Q31.2) MUTATED       22     74     46      5     16     22
  AMP PEAK 11(7Q31.2) WILD-TYPE     56     36     51     43     37     27
                               vv
clus                            CLUS_7
  AMP PEAK 11(7Q31.2) MUTATED       29
  AMP PEAK 11(7Q31.2) WILD-TYPE     48
D11V8, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          22                            56
  CLUS_2                          74                            36
  CLUS_3                          46                            51
  CLUS_4                           5                            43
  CLUS_5                          16                            37
  CLUS_6                          22                            27
  CLUS_7                          29                            48
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED       59    105     50
  AMP PEAK 11(7Q31.2) WILD-TYPE    127    116     53
D11V9, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          59                           127
  CLUS_2                         105                           116
  CLUS_3                          50                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7Q31.2) MUTATED       17     16     77     47     43     14
  AMP PEAK 11(7Q31.2) WILD-TYPE     54     23     68     83     53     15
D11V10, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          17                            54
  CLUS_2                          16                            23
  CLUS_3                          77                            68
  CLUS_4                          47                            83
  CLUS_5                          43                            53
  CLUS_6                          14                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7Q31.2) MUTATED       15     38     43     20     24     43
  AMP PEAK 11(7Q31.2) WILD-TYPE     44     52     52     23     46     34
D11V11, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          15                            44
  CLUS_2                          38                            52
  CLUS_3                          43                            52
  CLUS_4                          20                            23
  CLUS_5                          24                            46
  CLUS_6                          43                            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED       23    115     45
  AMP PEAK 11(7Q31.2) WILD-TYPE     81    123     47
D11V12, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          23                            81
  CLUS_2                         115                           123
  CLUS_3                          45                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED        2      4      2
  AMP PEAK 12(8P11.21) WILD-TYPE     13      6      5
D12V1, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                            4                              6
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED        2      4      2
  AMP PEAK 12(8P11.21) WILD-TYPE     12      7      5
D12V2, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              7
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.21) MUTATED       44     60     18     53
  AMP PEAK 12(8P11.21) WILD-TYPE    128     78    114     21
D12V3, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           44                            128
  CLUS_2                           60                             78
  CLUS_3                           18                            114
  CLUS_4                           53                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       72     59     24
  AMP PEAK 12(8P11.21) WILD-TYPE     84    111    105
D12V4, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           72                             84
  CLUS_2                           59                            111
  CLUS_3                           24                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8P11.21) MUTATED       28      5     25     35     34
  AMP PEAK 12(8P11.21) WILD-TYPE     63     17     41     40     75
D12V5, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           28                             63
  CLUS_2                            5                             17
  CLUS_3                           25                             41
  CLUS_4                           35                             40
  CLUS_5                           34                             75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       50     60     17
  AMP PEAK 12(8P11.21) WILD-TYPE    117     73     46
D12V6, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           50                            117
  CLUS_2                           60                             73
  CLUS_3                           17                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8P11.21) MUTATED       41     23     27     65     16
  AMP PEAK 12(8P11.21) WILD-TYPE     89     96     63     50     42
D12V7, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           41                             89
  CLUS_2                           23                             96
  CLUS_3                           27                             63
  CLUS_4                           65                             50
  CLUS_5                           16                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8P11.21) MUTATED       17     38     39     15     32     18
  AMP PEAK 12(8P11.21) WILD-TYPE     61     72     58     33     21     31
                                vv
clus                             CLUS_7
  AMP PEAK 12(8P11.21) MUTATED       13
  AMP PEAK 12(8P11.21) WILD-TYPE     64
D12V8, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           17                             61
  CLUS_2                           38                             72
  CLUS_3                           39                             58
  CLUS_4                           15                             33
  CLUS_5                           32                             21
  CLUS_6                           18                             31
  CLUS_7                           13                             64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       44     94     35
  AMP PEAK 12(8P11.21) WILD-TYPE    142    127     68
D12V9, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           44                            142
  CLUS_2                           94                            127
  CLUS_3                           35                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8P11.21) MUTATED       16     18     57     29     47      6
  AMP PEAK 12(8P11.21) WILD-TYPE     55     21     88    101     49     23
D12V10, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           16                             55
  CLUS_2                           18                             21
  CLUS_3                           57                             88
  CLUS_4                           29                            101
  CLUS_5                           47                             49
  CLUS_6                            6                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8P11.21) MUTATED       10     45     32     14     22     25
  AMP PEAK 12(8P11.21) WILD-TYPE     49     45     63     29     48     52
D12V11, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           10                             49
  CLUS_2                           45                             45
  CLUS_3                           32                             63
  CLUS_4                           14                             29
  CLUS_5                           22                             48
  CLUS_6                           25                             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       22     96     30
  AMP PEAK 12(8P11.21) WILD-TYPE     82    142     62
D12V12, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           22                             82
  CLUS_2                           96                            142
  CLUS_3                           30                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED        7      8      6
  AMP PEAK 13(8Q24.21) WILD-TYPE      8      2      1
D13V1, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                            7                              8
  CLUS_2                            8                              2
  CLUS_3                            6                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED        6      9      6
  AMP PEAK 13(8Q24.21) WILD-TYPE      8      2      1
D13V2, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            9                              2
  CLUS_3                            6                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED      117     97     47     64
  AMP PEAK 13(8Q24.21) WILD-TYPE     55     41     85     10
D13V3, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          117                             55
  CLUS_2                           97                             41
  CLUS_3                           47                             85
  CLUS_4                           64                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED      104    126     55
  AMP PEAK 13(8Q24.21) WILD-TYPE     52     44     74
D13V4, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          104                             52
  CLUS_2                          126                             44
  CLUS_3                           55                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(8Q24.21) MUTATED       59     11     49     58     60
  AMP PEAK 13(8Q24.21) WILD-TYPE     32     11     17     17     49
D13V5, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           59                             32
  CLUS_2                           11                             11
  CLUS_3                           49                             17
  CLUS_4                           58                             17
  CLUS_5                           60                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED      101     98     38
  AMP PEAK 13(8Q24.21) WILD-TYPE     66     35     25
D13V6, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          101                             66
  CLUS_2                           98                             35
  CLUS_3                           38                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(8Q24.21) MUTATED       98     51     52     92     28
  AMP PEAK 13(8Q24.21) WILD-TYPE     32     68     38     23     30
D13V7, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           98                             32
  CLUS_2                           51                             68
  CLUS_3                           52                             38
  CLUS_4                           92                             23
  CLUS_5                           28                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(8Q24.21) MUTATED       39     80     67     28     47     31
  AMP PEAK 13(8Q24.21) WILD-TYPE     39     30     30     20      6     18
                                vv
clus                             CLUS_7
  AMP PEAK 13(8Q24.21) MUTATED       29
  AMP PEAK 13(8Q24.21) WILD-TYPE     48
D13V8, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           39                             39
  CLUS_2                           80                             30
  CLUS_3                           67                             30
  CLUS_4                           28                             20
  CLUS_5                           47                              6
  CLUS_6                           31                             18
  CLUS_7                           29                             48
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED       91    161     69
  AMP PEAK 13(8Q24.21) WILD-TYPE     95     60     34
D13V9, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           91                             95
  CLUS_2                          161                             60
  CLUS_3                           69                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(8Q24.21) MUTATED       37     32    104     67     67     14
  AMP PEAK 13(8Q24.21) WILD-TYPE     34      7     41     63     29     15
D13V10, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           37                             34
  CLUS_2                           32                              7
  CLUS_3                          104                             41
  CLUS_4                           67                             63
  CLUS_5                           67                             29
  CLUS_6                           14                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(8Q24.21) MUTATED       16     74     64     21     47     49
  AMP PEAK 13(8Q24.21) WILD-TYPE     43     16     31     22     23     28
D13V11, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           16                             43
  CLUS_2                           74                             16
  CLUS_3                           64                             31
  CLUS_4                           21                             22
  CLUS_5                           47                             23
  CLUS_6                           49                             28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED       45    169     57
  AMP PEAK 13(8Q24.21) WILD-TYPE     59     69     35
D13V12, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           45                             59
  CLUS_2                          169                             69
  CLUS_3                           57                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(10P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.1) MUTATED        0      2      3
  AMP PEAK 14(10P15.1) WILD-TYPE     15      8      4
D14V1, multiclass
        clus
vv       AMP PEAK 14(10P15.1) MUTATED AMP PEAK 14(10P15.1) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                            2                              8
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.1) MUTATED        0      2      3
  AMP PEAK 14(10P15.1) WILD-TYPE     14      9      4
D14V2, multiclass
        clus
vv       AMP PEAK 14(10P15.1) MUTATED AMP PEAK 14(10P15.1) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            2                              9
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(10P15.1) MUTATED       39     52     10     41
  AMP PEAK 14(10P15.1) WILD-TYPE    133     86    122     33
D14V3, multiclass
        clus
vv       AMP PEAK 14(10P15.1) MUTATED AMP PEAK 14(10P15.1) WILD-TYPE
  CLUS_1                           39                            133
  CLUS_2                           52                             86
  CLUS_3                           10                            122
  CLUS_4                           41                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.1) MUTATED       56     55     13
  AMP PEAK 14(10P15.1) WILD-TYPE    100    115    116
D14V4, multiclass
        clus
vv       AMP PEAK 14(10P15.1) MUTATED AMP PEAK 14(10P15.1) WILD-TYPE
  CLUS_1                           56                            100
  CLUS_2                           55                            115
  CLUS_3                           13                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10P15.1) MUTATED       15      2     18     33     40
  AMP PEAK 14(10P15.1) WILD-TYPE     76     20     48     42     69
D14V5, multiclass
        clus
vv       AMP PEAK 14(10P15.1) MUTATED AMP PEAK 14(10P15.1) WILD-TYPE
  CLUS_1                           15                             76
  CLUS_2                            2                             20
  CLUS_3                           18                             48
  CLUS_4                           33                             42
  CLUS_5                           40                             69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.1) MUTATED       33     50     25
  AMP PEAK 14(10P15.1) WILD-TYPE    134     83     38
D14V6, multiclass
        clus
vv       AMP PEAK 14(10P15.1) MUTATED AMP PEAK 14(10P15.1) WILD-TYPE
  CLUS_1                           33                            134
  CLUS_2                           50                             83
  CLUS_3                           25                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10P15.1) MUTATED       37     16     28     51      8
  AMP PEAK 14(10P15.1) WILD-TYPE     93    103     62     64     50
D14V7, multiclass
        clus
vv       AMP PEAK 14(10P15.1) MUTATED AMP PEAK 14(10P15.1) WILD-TYPE
  CLUS_1                           37                             93
  CLUS_2                           16                            103
  CLUS_3                           28                             62
  CLUS_4                           51                             64
  CLUS_5                            8                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10P15.1) MUTATED        8     31     27     16     25     23
  AMP PEAK 14(10P15.1) WILD-TYPE     70     79     70     32     28     26
                                vv
clus                             CLUS_7
  AMP PEAK 14(10P15.1) MUTATED       10
  AMP PEAK 14(10P15.1) WILD-TYPE     67
D14V8, multiclass
        clus
vv       AMP PEAK 14(10P15.1) MUTATED AMP PEAK 14(10P15.1) WILD-TYPE
  CLUS_1                            8                             70
  CLUS_2                           31                             79
  CLUS_3                           27                             70
  CLUS_4                           16                             32
  CLUS_5                           25                             28
  CLUS_6                           23                             26
  CLUS_7                           10                             67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.1) MUTATED       32     83     23
  AMP PEAK 14(10P15.1) WILD-TYPE    154    138     80
D14V9, multiclass
        clus
vv       AMP PEAK 14(10P15.1) MUTATED AMP PEAK 14(10P15.1) WILD-TYPE
  CLUS_1                           32                            154
  CLUS_2                           83                            138
  CLUS_3                           23                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10P15.1) MUTATED       17     17     54     14     34      2
  AMP PEAK 14(10P15.1) WILD-TYPE     54     22     91    116     62     27
D14V10, multiclass
        clus
vv       AMP PEAK 14(10P15.1) MUTATED AMP PEAK 14(10P15.1) WILD-TYPE
  CLUS_1                           17                             54
  CLUS_2                           17                             22
  CLUS_3                           54                             91
  CLUS_4                           14                            116
  CLUS_5                           34                             62
  CLUS_6                            2                             27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10P15.1) MUTATED        4     36     33      8     19     20
  AMP PEAK 14(10P15.1) WILD-TYPE     55     54     62     35     51     57
D14V11, multiclass
        clus
vv       AMP PEAK 14(10P15.1) MUTATED AMP PEAK 14(10P15.1) WILD-TYPE
  CLUS_1                            4                             55
  CLUS_2                           36                             54
  CLUS_3                           33                             62
  CLUS_4                            8                             35
  CLUS_5                           19                             51
  CLUS_6                           20                             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.1) MUTATED       16     83     21
  AMP PEAK 14(10P15.1) WILD-TYPE     88    155     71
D14V12, multiclass
        clus
vv       AMP PEAK 14(10P15.1) MUTATED AMP PEAK 14(10P15.1) WILD-TYPE
  CLUS_1                           16                             88
  CLUS_2                           83                            155
  CLUS_3                           21                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED        3      3      7
  AMP PEAK 15(11Q13.3) WILD-TYPE     12      7      0
D15V1, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            3                             12
  CLUS_2                            3                              7
  CLUS_3                            7                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED        3      3      7
  AMP PEAK 15(11Q13.3) WILD-TYPE     11      8      0
D15V2, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            3                              8
  CLUS_3                            7                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q13.3) MUTATED       74     52     17     29
  AMP PEAK 15(11Q13.3) WILD-TYPE     98     86    115     45
D15V3, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           74                             98
  CLUS_2                           52                             86
  CLUS_3                           17                            115
  CLUS_4                           29                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       59     67     24
  AMP PEAK 15(11Q13.3) WILD-TYPE     97    103    105
D15V4, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           59                             97
  CLUS_2                           67                            103
  CLUS_3                           24                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11Q13.3) MUTATED       32      4     18     32     36
  AMP PEAK 15(11Q13.3) WILD-TYPE     59     18     48     43     73
D15V5, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           32                             59
  CLUS_2                            4                             18
  CLUS_3                           18                             48
  CLUS_4                           32                             43
  CLUS_5                           36                             73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       44     59     19
  AMP PEAK 15(11Q13.3) WILD-TYPE    123     74     44
D15V6, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           44                            123
  CLUS_2                           59                             74
  CLUS_3                           19                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11Q13.3) MUTATED       56     21     24     58     13
  AMP PEAK 15(11Q13.3) WILD-TYPE     74     98     66     57     45
D15V7, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           56                             74
  CLUS_2                           21                             98
  CLUS_3                           24                             66
  CLUS_4                           58                             57
  CLUS_5                           13                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11Q13.3) MUTATED       20     45     39      3     35     16
  AMP PEAK 15(11Q13.3) WILD-TYPE     58     65     58     45     18     33
                                vv
clus                             CLUS_7
  AMP PEAK 15(11Q13.3) MUTATED       14
  AMP PEAK 15(11Q13.3) WILD-TYPE     63
D15V8, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           20                             58
  CLUS_2                           45                             65
  CLUS_3                           39                             58
  CLUS_4                            3                             45
  CLUS_5                           35                             18
  CLUS_6                           16                             33
  CLUS_7                           14                             63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       32    101     36
  AMP PEAK 15(11Q13.3) WILD-TYPE    154    120     67
D15V9, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           32                            154
  CLUS_2                          101                            120
  CLUS_3                           36                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11Q13.3) MUTATED       10     20     62     25     43      9
  AMP PEAK 15(11Q13.3) WILD-TYPE     61     19     83    105     53     20
D15V10, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           10                             61
  CLUS_2                           20                             19
  CLUS_3                           62                             83
  CLUS_4                           25                            105
  CLUS_5                           43                             53
  CLUS_6                            9                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11Q13.3) MUTATED        7     51     31     16     20     20
  AMP PEAK 15(11Q13.3) WILD-TYPE     52     39     64     27     50     57
D15V11, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            7                             52
  CLUS_2                           51                             39
  CLUS_3                           31                             64
  CLUS_4                           16                             27
  CLUS_5                           20                             50
  CLUS_6                           20                             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       17     94     34
  AMP PEAK 15(11Q13.3) WILD-TYPE     87    144     58
D15V12, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           17                             87
  CLUS_2                           94                            144
  CLUS_3                           34                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12P12.1) MUTATED        2      3      5
  AMP PEAK 16(12P12.1) WILD-TYPE     13      7      2
D16V1, multiclass
        clus
vv       AMP PEAK 16(12P12.1) MUTATED AMP PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                            3                              7
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12P12.1) MUTATED        2      3      5
  AMP PEAK 16(12P12.1) WILD-TYPE     12      8      2
D16V2, multiclass
        clus
vv       AMP PEAK 16(12P12.1) MUTATED AMP PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            3                              8
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12P12.1) MUTATED       44     95     20     19
  AMP PEAK 16(12P12.1) WILD-TYPE    128     43    112     55
D16V3, multiclass
        clus
vv       AMP PEAK 16(12P12.1) MUTATED AMP PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                           44                            128
  CLUS_2                           95                             43
  CLUS_3                           20                            112
  CLUS_4                           19                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12P12.1) MUTATED       63     61     28
  AMP PEAK 16(12P12.1) WILD-TYPE     93    109    101
D16V4, multiclass
        clus
vv       AMP PEAK 16(12P12.1) MUTATED AMP PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                           63                             93
  CLUS_2                           61                            109
  CLUS_3                           28                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(12P12.1) MUTATED       27      4     20     35     33
  AMP PEAK 16(12P12.1) WILD-TYPE     64     18     46     40     76
D16V5, multiclass
        clus
vv       AMP PEAK 16(12P12.1) MUTATED AMP PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                           27                             64
  CLUS_2                            4                             18
  CLUS_3                           20                             46
  CLUS_4                           35                             40
  CLUS_5                           33                             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12P12.1) MUTATED       43     55     21
  AMP PEAK 16(12P12.1) WILD-TYPE    124     78     42
D16V6, multiclass
        clus
vv       AMP PEAK 16(12P12.1) MUTATED AMP PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                           43                            124
  CLUS_2                           55                             78
  CLUS_3                           21                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(12P12.1) MUTATED       50     10     50     53     15
  AMP PEAK 16(12P12.1) WILD-TYPE     80    109     40     62     43
D16V7, multiclass
        clus
vv       AMP PEAK 16(12P12.1) MUTATED AMP PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                           50                             80
  CLUS_2                           10                            109
  CLUS_3                           50                             40
  CLUS_4                           53                             62
  CLUS_5                           15                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(12P12.1) MUTATED       12     43     35      5     32     30
  AMP PEAK 16(12P12.1) WILD-TYPE     66     67     62     43     21     19
                                vv
clus                             CLUS_7
  AMP PEAK 16(12P12.1) MUTATED       21
  AMP PEAK 16(12P12.1) WILD-TYPE     56
D16V8, multiclass
        clus
vv       AMP PEAK 16(12P12.1) MUTATED AMP PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                           12                             66
  CLUS_2                           43                             67
  CLUS_3                           35                             62
  CLUS_4                            5                             43
  CLUS_5                           32                             21
  CLUS_6                           30                             19
  CLUS_7                           21                             56
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12P12.1) MUTATED       39    103     33
  AMP PEAK 16(12P12.1) WILD-TYPE    147    118     70
D16V9, multiclass
        clus
vv       AMP PEAK 16(12P12.1) MUTATED AMP PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                           39                            147
  CLUS_2                          103                            118
  CLUS_3                           33                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(12P12.1) MUTATED       12     22     57     33     45      6
  AMP PEAK 16(12P12.1) WILD-TYPE     59     17     88     97     51     23
D16V10, multiclass
        clus
vv       AMP PEAK 16(12P12.1) MUTATED AMP PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                           12                             59
  CLUS_2                           22                             17
  CLUS_3                           57                             88
  CLUS_4                           33                             97
  CLUS_5                           45                             51
  CLUS_6                            6                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(12P12.1) MUTATED        9     41     38     13     17     30
  AMP PEAK 16(12P12.1) WILD-TYPE     50     49     57     30     53     47
D16V11, multiclass
        clus
vv       AMP PEAK 16(12P12.1) MUTATED AMP PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                            9                             50
  CLUS_2                           41                             49
  CLUS_3                           38                             57
  CLUS_4                           13                             30
  CLUS_5                           17                             53
  CLUS_6                           30                             47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12P12.1) MUTATED       19    101     28
  AMP PEAK 16(12P12.1) WILD-TYPE     85    137     64
D16V12, multiclass
        clus
vv       AMP PEAK 16(12P12.1) MUTATED AMP PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                           19                             85
  CLUS_2                          101                            137
  CLUS_3                           28                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(12Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12Q14.1) MUTATED        3      3      4
  AMP PEAK 17(12Q14.1) WILD-TYPE     12      7      3
D17V1, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                            3                             12
  CLUS_2                            3                              7
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12Q14.1) MUTATED        3      3      4
  AMP PEAK 17(12Q14.1) WILD-TYPE     11      8      3
D17V2, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            3                              8
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12Q14.1) MUTATED       34     93     18     24
  AMP PEAK 17(12Q14.1) WILD-TYPE    138     45    114     50
D17V3, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                           34                            138
  CLUS_2                           93                             45
  CLUS_3                           18                            114
  CLUS_4                           24                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12Q14.1) MUTATED       69     53     26
  AMP PEAK 17(12Q14.1) WILD-TYPE     87    117    103
D17V4, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                           69                             87
  CLUS_2                           53                            117
  CLUS_3                           26                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(12Q14.1) MUTATED       25      5     23     42     31
  AMP PEAK 17(12Q14.1) WILD-TYPE     66     17     43     33     78
D17V5, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                           25                             66
  CLUS_2                            5                             17
  CLUS_3                           23                             43
  CLUS_4                           42                             33
  CLUS_5                           31                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12Q14.1) MUTATED       50     57     19
  AMP PEAK 17(12Q14.1) WILD-TYPE    117     76     44
D17V6, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                           50                            117
  CLUS_2                           57                             76
  CLUS_3                           19                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(12Q14.1) MUTATED       38     14     43     62     12
  AMP PEAK 17(12Q14.1) WILD-TYPE     92    105     47     53     46
D17V7, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                           38                             92
  CLUS_2                           14                            105
  CLUS_3                           43                             47
  CLUS_4                           62                             53
  CLUS_5                           12                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(12Q14.1) MUTATED       13     33     37      6     36     31
  AMP PEAK 17(12Q14.1) WILD-TYPE     65     77     60     42     17     18
                                vv
clus                             CLUS_7
  AMP PEAK 17(12Q14.1) MUTATED       13
  AMP PEAK 17(12Q14.1) WILD-TYPE     64
D17V8, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                           13                             65
  CLUS_2                           33                             77
  CLUS_3                           37                             60
  CLUS_4                            6                             42
  CLUS_5                           36                             17
  CLUS_6                           31                             18
  CLUS_7                           13                             64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12Q14.1) MUTATED       31    105     31
  AMP PEAK 17(12Q14.1) WILD-TYPE    155    116     72
D17V9, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                           31                            155
  CLUS_2                          105                            116
  CLUS_3                           31                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(12Q14.1) MUTATED       12     25     49     23     49      9
  AMP PEAK 17(12Q14.1) WILD-TYPE     59     14     96    107     47     20
D17V10, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                           12                             59
  CLUS_2                           25                             14
  CLUS_3                           49                             96
  CLUS_4                           23                            107
  CLUS_5                           49                             47
  CLUS_6                            9                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(12Q14.1) MUTATED        6     44     33     14     22     23
  AMP PEAK 17(12Q14.1) WILD-TYPE     53     46     62     29     48     54
D17V11, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                            6                             53
  CLUS_2                           44                             46
  CLUS_3                           33                             62
  CLUS_4                           14                             29
  CLUS_5                           22                             48
  CLUS_6                           23                             54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12Q14.1) MUTATED       13    106     23
  AMP PEAK 17(12Q14.1) WILD-TYPE     91    132     69
D17V12, multiclass
        clus
vv       AMP PEAK 17(12Q14.1) MUTATED AMP PEAK 17(12Q14.1) WILD-TYPE
  CLUS_1                           13                             91
  CLUS_2                          106                            132
  CLUS_3                           23                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12Q15) MUTATED        2      1      4
  AMP PEAK 18(12Q15) WILD-TYPE     13      9      3
D18V1, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                          2                           13
  CLUS_2                          1                            9
  CLUS_3                          4                            3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12Q15) MUTATED        2      1      4
  AMP PEAK 18(12Q15) WILD-TYPE     12     10      3
D18V2, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          1                           10
  CLUS_3                          4                            3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(12Q15) MUTATED       35     90     19     25
  AMP PEAK 18(12Q15) WILD-TYPE    137     48    113     49
D18V3, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         35                          137
  CLUS_2                         90                           48
  CLUS_3                         19                          113
  CLUS_4                         25                           49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12Q15) MUTATED       69     53     26
  AMP PEAK 18(12Q15) WILD-TYPE     87    117    103
D18V4, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         69                           87
  CLUS_2                         53                          117
  CLUS_3                         26                          103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12Q15) MUTATED       25      7     24     41     27
  AMP PEAK 18(12Q15) WILD-TYPE     66     15     42     34     82
D18V5, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         25                           66
  CLUS_2                          7                           15
  CLUS_3                         24                           42
  CLUS_4                         41                           34
  CLUS_5                         27                           82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12Q15) MUTATED       51     58     15
  AMP PEAK 18(12Q15) WILD-TYPE    116     75     48
D18V6, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         51                          116
  CLUS_2                         58                           75
  CLUS_3                         15                           48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12Q15) MUTATED       39     13     43     63     11
  AMP PEAK 18(12Q15) WILD-TYPE     91    106     47     52     47
D18V7, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         39                           91
  CLUS_2                         13                          106
  CLUS_3                         43                           47
  CLUS_4                         63                           52
  CLUS_5                         11                           47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 18(12Q15) MUTATED       16     29     37      6     36     31     14
  AMP PEAK 18(12Q15) WILD-TYPE     62     81     60     42     17     18     63
D18V8, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         16                           62
  CLUS_2                         29                           81
  CLUS_3                         37                           60
  CLUS_4                          6                           42
  CLUS_5                         36                           17
  CLUS_6                         31                           18
  CLUS_7                         14                           63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12Q15) MUTATED       32    106     30
  AMP PEAK 18(12Q15) WILD-TYPE    154    115     73
D18V9, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         32                          154
  CLUS_2                        106                          115
  CLUS_3                         30                           73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12Q15) MUTATED       12     25     44     26     51     10
  AMP PEAK 18(12Q15) WILD-TYPE     59     14    101    104     45     19
D18V10, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         12                           59
  CLUS_2                         25                           14
  CLUS_3                         44                          101
  CLUS_4                         26                          104
  CLUS_5                         51                           45
  CLUS_6                         10                           19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12Q15) MUTATED        5     43     34     16     21     25
  AMP PEAK 18(12Q15) WILD-TYPE     54     47     61     27     49     52
D18V11, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                          5                           54
  CLUS_2                         43                           47
  CLUS_3                         34                           61
  CLUS_4                         16                           27
  CLUS_5                         21                           49
  CLUS_6                         25                           52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12Q15) MUTATED       15    104     25
  AMP PEAK 18(12Q15) WILD-TYPE     89    134     67
D18V12, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         15                           89
  CLUS_2                        104                          134
  CLUS_3                         25                           67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(13Q33.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(13Q33.3) MUTATED        4      1      1
  AMP PEAK 19(13Q33.3) WILD-TYPE     11      9      6
D19V1, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                            4                             11
  CLUS_2                            1                              9
  CLUS_3                            1                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(13Q33.3) MUTATED        4      1      1
  AMP PEAK 19(13Q33.3) WILD-TYPE     10     10      6
D19V2, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            1                             10
  CLUS_3                            1                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(13Q33.3) MUTATED       28     19     12     17
  AMP PEAK 19(13Q33.3) WILD-TYPE    144    119    120     57
D19V3, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                           28                            144
  CLUS_2                           19                            119
  CLUS_3                           12                            120
  CLUS_4                           17                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(13Q33.3) MUTATED       36     21      8
  AMP PEAK 19(13Q33.3) WILD-TYPE    120    149    121
D19V4, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                           36                            120
  CLUS_2                           21                            149
  CLUS_3                            8                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(13Q33.3) MUTATED        9      2     12     14      9
  AMP PEAK 19(13Q33.3) WILD-TYPE     82     20     54     61    100
D19V5, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                            9                             82
  CLUS_2                            2                             20
  CLUS_3                           12                             54
  CLUS_4                           14                             61
  CLUS_5                            9                            100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(13Q33.3) MUTATED       18     21      7
  AMP PEAK 19(13Q33.3) WILD-TYPE    149    112     56
D19V6, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                           18                            149
  CLUS_2                           21                            112
  CLUS_3                            7                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(13Q33.3) MUTATED       24     17     12     19      4
  AMP PEAK 19(13Q33.3) WILD-TYPE    106    102     78     96     54
D19V7, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                           24                            106
  CLUS_2                           17                            102
  CLUS_3                           12                             78
  CLUS_4                           19                             96
  CLUS_5                            4                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(13Q33.3) MUTATED       12     11     25      8      7      7
  AMP PEAK 19(13Q33.3) WILD-TYPE     66     99     72     40     46     42
                                vv
clus                             CLUS_7
  AMP PEAK 19(13Q33.3) MUTATED        6
  AMP PEAK 19(13Q33.3) WILD-TYPE     71
D19V8, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                           12                             66
  CLUS_2                           11                             99
  CLUS_3                           25                             72
  CLUS_4                            8                             40
  CLUS_5                            7                             46
  CLUS_6                            7                             42
  CLUS_7                            6                             71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(13Q33.3) MUTATED       23     39     13
  AMP PEAK 19(13Q33.3) WILD-TYPE    163    182     90
D19V9, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                           23                            163
  CLUS_2                           39                            182
  CLUS_3                           13                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(13Q33.3) MUTATED       10      6     24     11     20      4
  AMP PEAK 19(13Q33.3) WILD-TYPE     61     33    121    119     76     25
D19V10, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                           10                             61
  CLUS_2                            6                             33
  CLUS_3                           24                            121
  CLUS_4                           11                            119
  CLUS_5                           20                             76
  CLUS_6                            4                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(13Q33.3) MUTATED        3     21     16      5     10     10
  AMP PEAK 19(13Q33.3) WILD-TYPE     56     69     79     38     60     67
D19V11, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                            3                             56
  CLUS_2                           21                             69
  CLUS_3                           16                             79
  CLUS_4                            5                             38
  CLUS_5                           10                             60
  CLUS_6                           10                             67
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(13Q33.3) MUTATED        8     43     14
  AMP PEAK 19(13Q33.3) WILD-TYPE     96    195     78
D19V12, multiclass
        clus
vv       AMP PEAK 19(13Q33.3) MUTATED AMP PEAK 19(13Q33.3) WILD-TYPE
  CLUS_1                            8                             96
  CLUS_2                           43                            195
  CLUS_3                           14                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(14Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q13.3) MUTATED        6      5      5
  AMP PEAK 20(14Q13.3) WILD-TYPE      9      5      2
D20V1, multiclass
        clus
vv       AMP PEAK 20(14Q13.3) MUTATED AMP PEAK 20(14Q13.3) WILD-TYPE
  CLUS_1                            6                              9
  CLUS_2                            5                              5
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q13.3) MUTATED        6      5      5
  AMP PEAK 20(14Q13.3) WILD-TYPE      8      6      2
D20V2, multiclass
        clus
vv       AMP PEAK 20(14Q13.3) MUTATED AMP PEAK 20(14Q13.3) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            5                              6
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(14Q13.3) MUTATED       96     68     23     46
  AMP PEAK 20(14Q13.3) WILD-TYPE     76     70    109     28
D20V3, multiclass
        clus
vv       AMP PEAK 20(14Q13.3) MUTATED AMP PEAK 20(14Q13.3) WILD-TYPE
  CLUS_1                           96                             76
  CLUS_2                           68                             70
  CLUS_3                           23                            109
  CLUS_4                           46                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q13.3) MUTATED       85     84     37
  AMP PEAK 20(14Q13.3) WILD-TYPE     71     86     92
D20V4, multiclass
        clus
vv       AMP PEAK 20(14Q13.3) MUTATED AMP PEAK 20(14Q13.3) WILD-TYPE
  CLUS_1                           85                             71
  CLUS_2                           84                             86
  CLUS_3                           37                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(14Q13.3) MUTATED       40      5     27     44     45
  AMP PEAK 20(14Q13.3) WILD-TYPE     51     17     39     31     64
D20V5, multiclass
        clus
vv       AMP PEAK 20(14Q13.3) MUTATED AMP PEAK 20(14Q13.3) WILD-TYPE
  CLUS_1                           40                             51
  CLUS_2                            5                             17
  CLUS_3                           27                             39
  CLUS_4                           44                             31
  CLUS_5                           45                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q13.3) MUTATED       63     71     27
  AMP PEAK 20(14Q13.3) WILD-TYPE    104     62     36
D20V6, multiclass
        clus
vv       AMP PEAK 20(14Q13.3) MUTATED AMP PEAK 20(14Q13.3) WILD-TYPE
  CLUS_1                           63                            104
  CLUS_2                           71                             62
  CLUS_3                           27                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(14Q13.3) MUTATED       78     40     20     78     16
  AMP PEAK 20(14Q13.3) WILD-TYPE     52     79     70     37     42
D20V7, multiclass
        clus
vv       AMP PEAK 20(14Q13.3) MUTATED AMP PEAK 20(14Q13.3) WILD-TYPE
  CLUS_1                           78                             52
  CLUS_2                           40                             79
  CLUS_3                           20                             70
  CLUS_4                           78                             37
  CLUS_5                           16                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(14Q13.3) MUTATED       34     60     63     10     42      8
  AMP PEAK 20(14Q13.3) WILD-TYPE     44     50     34     38     11     41
                                vv
clus                             CLUS_7
  AMP PEAK 20(14Q13.3) MUTATED       15
  AMP PEAK 20(14Q13.3) WILD-TYPE     62
D20V8, multiclass
        clus
vv       AMP PEAK 20(14Q13.3) MUTATED AMP PEAK 20(14Q13.3) WILD-TYPE
  CLUS_1                           34                             44
  CLUS_2                           60                             50
  CLUS_3                           63                             34
  CLUS_4                           10                             38
  CLUS_5                           42                             11
  CLUS_6                            8                             41
  CLUS_7                           15                             62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q13.3) MUTATED       56    118     55
  AMP PEAK 20(14Q13.3) WILD-TYPE    130    103     48
D20V9, multiclass
        clus
vv       AMP PEAK 20(14Q13.3) MUTATED AMP PEAK 20(14Q13.3) WILD-TYPE
  CLUS_1                           56                            130
  CLUS_2                          118                            103
  CLUS_3                           55                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(14Q13.3) MUTATED       28     32     74     29     52     14
  AMP PEAK 20(14Q13.3) WILD-TYPE     43      7     71    101     44     15
D20V10, multiclass
        clus
vv       AMP PEAK 20(14Q13.3) MUTATED AMP PEAK 20(14Q13.3) WILD-TYPE
  CLUS_1                           28                             43
  CLUS_2                           32                              7
  CLUS_3                           74                             71
  CLUS_4                           29                            101
  CLUS_5                           52                             44
  CLUS_6                           14                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(14Q13.3) MUTATED       13     58     43     24     29     29
  AMP PEAK 20(14Q13.3) WILD-TYPE     46     32     52     19     41     48
D20V11, multiclass
        clus
vv       AMP PEAK 20(14Q13.3) MUTATED AMP PEAK 20(14Q13.3) WILD-TYPE
  CLUS_1                           13                             46
  CLUS_2                           58                             32
  CLUS_3                           43                             52
  CLUS_4                           24                             19
  CLUS_5                           29                             41
  CLUS_6                           29                             48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q13.3) MUTATED       27    125     44
  AMP PEAK 20(14Q13.3) WILD-TYPE     77    113     48
D20V12, multiclass
        clus
vv       AMP PEAK 20(14Q13.3) MUTATED AMP PEAK 20(14Q13.3) WILD-TYPE
  CLUS_1                           27                             77
  CLUS_2                          125                            113
  CLUS_3                           44                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(16P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(16P11.2) MUTATED        7      5      2
  AMP PEAK 21(16P11.2) WILD-TYPE      8      5      5
D21V1, multiclass
        clus
vv       AMP PEAK 21(16P11.2) MUTATED AMP PEAK 21(16P11.2) WILD-TYPE
  CLUS_1                            7                              8
  CLUS_2                            5                              5
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(16P11.2) MUTATED        6      6      2
  AMP PEAK 21(16P11.2) WILD-TYPE      8      5      5
D21V2, multiclass
        clus
vv       AMP PEAK 21(16P11.2) MUTATED AMP PEAK 21(16P11.2) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            6                              5
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(16P11.2) MUTATED       79     46     25     17
  AMP PEAK 21(16P11.2) WILD-TYPE     93     92    107     57
D21V3, multiclass
        clus
vv       AMP PEAK 21(16P11.2) MUTATED AMP PEAK 21(16P11.2) WILD-TYPE
  CLUS_1                           79                             93
  CLUS_2                           46                             92
  CLUS_3                           25                            107
  CLUS_4                           17                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(16P11.2) MUTATED       54     55     36
  AMP PEAK 21(16P11.2) WILD-TYPE    102    115     93
D21V4, multiclass
        clus
vv       AMP PEAK 21(16P11.2) MUTATED AMP PEAK 21(16P11.2) WILD-TYPE
  CLUS_1                           54                            102
  CLUS_2                           55                            115
  CLUS_3                           36                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(16P11.2) MUTATED       40      7     23     28     24
  AMP PEAK 21(16P11.2) WILD-TYPE     51     15     43     47     85
D21V5, multiclass
        clus
vv       AMP PEAK 21(16P11.2) MUTATED AMP PEAK 21(16P11.2) WILD-TYPE
  CLUS_1                           40                             51
  CLUS_2                            7                             15
  CLUS_3                           23                             43
  CLUS_4                           28                             47
  CLUS_5                           24                             85
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(16P11.2) MUTATED       59     44     19
  AMP PEAK 21(16P11.2) WILD-TYPE    108     89     44
D21V6, multiclass
        clus
vv       AMP PEAK 21(16P11.2) MUTATED AMP PEAK 21(16P11.2) WILD-TYPE
  CLUS_1                           59                            108
  CLUS_2                           44                             89
  CLUS_3                           19                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(16P11.2) MUTATED       51     36     20     37     23
  AMP PEAK 21(16P11.2) WILD-TYPE     79     83     70     78     35
D21V7, multiclass
        clus
vv       AMP PEAK 21(16P11.2) MUTATED AMP PEAK 21(16P11.2) WILD-TYPE
  CLUS_1                           51                             79
  CLUS_2                           36                             83
  CLUS_3                           20                             70
  CLUS_4                           37                             78
  CLUS_5                           23                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(16P11.2) MUTATED       31     41     38      9     18     11
  AMP PEAK 21(16P11.2) WILD-TYPE     47     69     59     39     35     38
                                vv
clus                             CLUS_7
  AMP PEAK 21(16P11.2) MUTATED       19
  AMP PEAK 21(16P11.2) WILD-TYPE     58
D21V8, multiclass
        clus
vv       AMP PEAK 21(16P11.2) MUTATED AMP PEAK 21(16P11.2) WILD-TYPE
  CLUS_1                           31                             47
  CLUS_2                           41                             69
  CLUS_3                           38                             59
  CLUS_4                            9                             39
  CLUS_5                           18                             35
  CLUS_6                           11                             38
  CLUS_7                           19                             58
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(16P11.2) MUTATED       48     80     38
  AMP PEAK 21(16P11.2) WILD-TYPE    138    141     65
D21V9, multiclass
        clus
vv       AMP PEAK 21(16P11.2) MUTATED AMP PEAK 21(16P11.2) WILD-TYPE
  CLUS_1                           48                            138
  CLUS_2                           80                            141
  CLUS_3                           38                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(16P11.2) MUTATED       19     17     48     32     34     16
  AMP PEAK 21(16P11.2) WILD-TYPE     52     22     97     98     62     13
D21V10, multiclass
        clus
vv       AMP PEAK 21(16P11.2) MUTATED AMP PEAK 21(16P11.2) WILD-TYPE
  CLUS_1                           19                             52
  CLUS_2                           17                             22
  CLUS_3                           48                             97
  CLUS_4                           32                             98
  CLUS_5                           34                             62
  CLUS_6                           16                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(16P11.2) MUTATED       20     34     31     14     22     18
  AMP PEAK 21(16P11.2) WILD-TYPE     39     56     64     29     48     59
D21V11, multiclass
        clus
vv       AMP PEAK 21(16P11.2) MUTATED AMP PEAK 21(16P11.2) WILD-TYPE
  CLUS_1                           20                             39
  CLUS_2                           34                             56
  CLUS_3                           31                             64
  CLUS_4                           14                             29
  CLUS_5                           22                             48
  CLUS_6                           18                             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(16P11.2) MUTATED       30     74     35
  AMP PEAK 21(16P11.2) WILD-TYPE     74    164     57
D21V12, multiclass
        clus
vv       AMP PEAK 21(16P11.2) MUTATED AMP PEAK 21(16P11.2) WILD-TYPE
  CLUS_1                           30                             74
  CLUS_2                           74                            164
  CLUS_3                           35                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q12) MUTATED        5      5      6
  AMP PEAK 22(17Q12) WILD-TYPE     10      5      1
D22V1, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                          5                           10
  CLUS_2                          5                            5
  CLUS_3                          6                            1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q12) MUTATED        4      6      6
  AMP PEAK 22(17Q12) WILD-TYPE     10      5      1
D22V2, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                          4                           10
  CLUS_2                          6                            5
  CLUS_3                          6                            1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(17Q12) MUTATED      105     71     17     34
  AMP PEAK 22(17Q12) WILD-TYPE     67     67    115     40
D22V3, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                        105                           67
  CLUS_2                         71                           67
  CLUS_3                         17                          115
  CLUS_4                         34                           40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q12) MUTATED       74     89     29
  AMP PEAK 22(17Q12) WILD-TYPE     82     81    100
D22V4, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                         74                           82
  CLUS_2                         89                           81
  CLUS_3                         29                          100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(17Q12) MUTATED       45     10     28     44     32
  AMP PEAK 22(17Q12) WILD-TYPE     46     12     38     31     77
D22V5, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                         45                           46
  CLUS_2                         10                           12
  CLUS_3                         28                           38
  CLUS_4                         44                           31
  CLUS_5                         32                           77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q12) MUTATED       66     75     18
  AMP PEAK 22(17Q12) WILD-TYPE    101     58     45
D22V6, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                         66                          101
  CLUS_2                         75                           58
  CLUS_3                         18                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(17Q12) MUTATED       80     31     32     60     22
  AMP PEAK 22(17Q12) WILD-TYPE     50     88     58     55     36
D22V7, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                         80                           50
  CLUS_2                         31                           88
  CLUS_3                         32                           58
  CLUS_4                         60                           55
  CLUS_5                         22                           36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 22(17Q12) MUTATED       30     62     57      8     29     17     22
  AMP PEAK 22(17Q12) WILD-TYPE     48     48     40     40     24     32     55
D22V8, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                         30                           48
  CLUS_2                         62                           48
  CLUS_3                         57                           40
  CLUS_4                          8                           40
  CLUS_5                         29                           24
  CLUS_6                         17                           32
  CLUS_7                         22                           55
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q12) MUTATED       57    124     43
  AMP PEAK 22(17Q12) WILD-TYPE    129     97     60
D22V9, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                         57                          129
  CLUS_2                        124                           97
  CLUS_3                         43                           60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(17Q12) MUTATED       19     25     72     37     60     11
  AMP PEAK 22(17Q12) WILD-TYPE     52     14     73     93     36     18
D22V10, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                         19                           52
  CLUS_2                         25                           14
  CLUS_3                         72                           73
  CLUS_4                         37                           93
  CLUS_5                         60                           36
  CLUS_6                         11                           18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(17Q12) MUTATED        9     51     46     16     29     36
  AMP PEAK 22(17Q12) WILD-TYPE     50     39     49     27     41     41
D22V11, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                          9                           50
  CLUS_2                         51                           39
  CLUS_3                         46                           49
  CLUS_4                         16                           27
  CLUS_5                         29                           41
  CLUS_6                         36                           41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q12) MUTATED       24    121     42
  AMP PEAK 22(17Q12) WILD-TYPE     80    117     50
D22V12, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                         24                           80
  CLUS_2                        121                          117
  CLUS_3                         42                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(17Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q23.1) MUTATED        7      7      5
  AMP PEAK 23(17Q23.1) WILD-TYPE      8      3      2
D23V1, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                            7                              8
  CLUS_2                            7                              3
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q23.1) MUTATED        6      8      5
  AMP PEAK 23(17Q23.1) WILD-TYPE      8      3      2
D23V2, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            8                              3
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q23.1) MUTATED      113     77     23     36
  AMP PEAK 23(17Q23.1) WILD-TYPE     59     61    109     38
D23V3, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                          113                             59
  CLUS_2                           77                             61
  CLUS_3                           23                            109
  CLUS_4                           36                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q23.1) MUTATED       73    103     37
  AMP PEAK 23(17Q23.1) WILD-TYPE     83     67     92
D23V4, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                           73                             83
  CLUS_2                          103                             67
  CLUS_3                           37                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q23.1) MUTATED       50     11     30     45     42
  AMP PEAK 23(17Q23.1) WILD-TYPE     41     11     36     30     67
D23V5, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                           50                             41
  CLUS_2                           11                             11
  CLUS_3                           30                             36
  CLUS_4                           45                             30
  CLUS_5                           42                             67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q23.1) MUTATED       75     80     23
  AMP PEAK 23(17Q23.1) WILD-TYPE     92     53     40
D23V6, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                           75                             92
  CLUS_2                           80                             53
  CLUS_3                           23                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q23.1) MUTATED       90     38     41     56     23
  AMP PEAK 23(17Q23.1) WILD-TYPE     40     81     49     59     35
D23V7, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                           90                             40
  CLUS_2                           38                             81
  CLUS_3                           41                             49
  CLUS_4                           56                             59
  CLUS_5                           23                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17Q23.1) MUTATED       36     74     55      7     29     22
  AMP PEAK 23(17Q23.1) WILD-TYPE     42     36     42     41     24     27
                                vv
clus                             CLUS_7
  AMP PEAK 23(17Q23.1) MUTATED       25
  AMP PEAK 23(17Q23.1) WILD-TYPE     52
D23V8, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                           36                             42
  CLUS_2                           74                             36
  CLUS_3                           55                             42
  CLUS_4                            7                             41
  CLUS_5                           29                             24
  CLUS_6                           22                             27
  CLUS_7                           25                             52
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q23.1) MUTATED       67    130     50
  AMP PEAK 23(17Q23.1) WILD-TYPE    119     91     53
D23V9, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                           67                            119
  CLUS_2                          130                             91
  CLUS_3                           50                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17Q23.1) MUTATED       25     22     84     44     60     12
  AMP PEAK 23(17Q23.1) WILD-TYPE     46     17     61     86     36     17
D23V10, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                           25                             46
  CLUS_2                           22                             17
  CLUS_3                           84                             61
  CLUS_4                           44                             86
  CLUS_5                           60                             36
  CLUS_6                           12                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17Q23.1) MUTATED       12     51     51     19     35     37
  AMP PEAK 23(17Q23.1) WILD-TYPE     47     39     44     24     35     40
D23V11, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                           12                             47
  CLUS_2                           51                             39
  CLUS_3                           51                             44
  CLUS_4                           19                             24
  CLUS_5                           35                             35
  CLUS_6                           37                             40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q23.1) MUTATED       28    130     47
  AMP PEAK 23(17Q23.1) WILD-TYPE     76    108     45
D23V12, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                           28                             76
  CLUS_2                          130                            108
  CLUS_3                           47                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED        1      1      4
  AMP PEAK 24(18Q11.2) WILD-TYPE     14      9      3
D24V1, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            1                              9
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED        1      1      4
  AMP PEAK 24(18Q11.2) WILD-TYPE     13     10      3
D24V2, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            1                             10
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18Q11.2) MUTATED       35     30     12     28
  AMP PEAK 24(18Q11.2) WILD-TYPE    137    108    120     46
D24V3, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           35                            137
  CLUS_2                           30                            108
  CLUS_3                           12                            120
  CLUS_4                           28                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       52     34      9
  AMP PEAK 24(18Q11.2) WILD-TYPE    104    136    120
D24V4, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           52                            104
  CLUS_2                           34                            136
  CLUS_3                            9                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(18Q11.2) MUTATED       14      3     15     18     22
  AMP PEAK 24(18Q11.2) WILD-TYPE     77     19     51     57     87
D24V5, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           14                             77
  CLUS_2                            3                             19
  CLUS_3                           15                             51
  CLUS_4                           18                             57
  CLUS_5                           22                             87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       29     26     17
  AMP PEAK 24(18Q11.2) WILD-TYPE    138    107     46
D24V6, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           29                            138
  CLUS_2                           26                            107
  CLUS_3                           17                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(18Q11.2) MUTATED       25     14     16     41      7
  AMP PEAK 24(18Q11.2) WILD-TYPE    105    105     74     74     51
D24V7, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           25                            105
  CLUS_2                           14                            105
  CLUS_3                           16                             74
  CLUS_4                           41                             74
  CLUS_5                            7                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(18Q11.2) MUTATED        7     17     30      7     22      9
  AMP PEAK 24(18Q11.2) WILD-TYPE     71     93     67     41     31     40
                                vv
clus                             CLUS_7
  AMP PEAK 24(18Q11.2) MUTATED       11
  AMP PEAK 24(18Q11.2) WILD-TYPE     66
D24V8, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                            7                             71
  CLUS_2                           17                             93
  CLUS_3                           30                             67
  CLUS_4                            7                             41
  CLUS_5                           22                             31
  CLUS_6                            9                             40
  CLUS_7                           11                             66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       19     62     22
  AMP PEAK 24(18Q11.2) WILD-TYPE    167    159     81
D24V9, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           19                            167
  CLUS_2                           62                            159
  CLUS_3                           22                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(18Q11.2) MUTATED        7     12     30     16     35      3
  AMP PEAK 24(18Q11.2) WILD-TYPE     64     27    115    114     61     26
D24V10, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                            7                             64
  CLUS_2                           12                             27
  CLUS_3                           30                            115
  CLUS_4                           16                            114
  CLUS_5                           35                             61
  CLUS_6                            3                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(18Q11.2) MUTATED        7     37     19      8      4     17
  AMP PEAK 24(18Q11.2) WILD-TYPE     52     53     76     35     66     60
D24V11, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                            7                             52
  CLUS_2                           37                             53
  CLUS_3                           19                             76
  CLUS_4                            8                             35
  CLUS_5                            4                             66
  CLUS_6                           17                             60
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED        9     68     15
  AMP PEAK 24(18Q11.2) WILD-TYPE     95    170     77
D24V12, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                            9                             95
  CLUS_2                           68                            170
  CLUS_3                           15                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q12) MUTATED        0      4      2
  AMP PEAK 25(19Q12) WILD-TYPE     15      6      5
D25V1, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                          0                           15
  CLUS_2                          4                            6
  CLUS_3                          2                            5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q12) MUTATED        0      4      2
  AMP PEAK 25(19Q12) WILD-TYPE     14      7      5
D25V2, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          4                            7
  CLUS_3                          2                            5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19Q12) MUTATED       42     56     12     29
  AMP PEAK 25(19Q12) WILD-TYPE    130     82    120     45
D25V3, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         42                          130
  CLUS_2                         56                           82
  CLUS_3                         12                          120
  CLUS_4                         29                           45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q12) MUTATED       66     38     22
  AMP PEAK 25(19Q12) WILD-TYPE     90    132    107
D25V4, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         66                           90
  CLUS_2                         38                          132
  CLUS_3                         22                          107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19Q12) MUTATED       17      7     17     37     22
  AMP PEAK 25(19Q12) WILD-TYPE     74     15     49     38     87
D25V5, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         17                           74
  CLUS_2                          7                           15
  CLUS_3                         17                           49
  CLUS_4                         37                           38
  CLUS_5                         22                           87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q12) MUTATED       36     51     13
  AMP PEAK 25(19Q12) WILD-TYPE    131     82     50
D25V6, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         36                          131
  CLUS_2                         51                           82
  CLUS_3                         13                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19Q12) MUTATED       40     18     28     41      9
  AMP PEAK 25(19Q12) WILD-TYPE     90    101     62     74     49
D25V7, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         40                           90
  CLUS_2                         18                          101
  CLUS_3                         28                           62
  CLUS_4                         41                           74
  CLUS_5                          9                           49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 25(19Q12) MUTATED        8     30     36     13     17     21     11
  AMP PEAK 25(19Q12) WILD-TYPE     70     80     61     35     36     28     66
D25V8, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                          8                           70
  CLUS_2                         30                           80
  CLUS_3                         36                           61
  CLUS_4                         13                           35
  CLUS_5                         17                           36
  CLUS_6                         21                           28
  CLUS_7                         11                           66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q12) MUTATED       28     86     24
  AMP PEAK 25(19Q12) WILD-TYPE    158    135     79
D25V9, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         28                          158
  CLUS_2                         86                          135
  CLUS_3                         24                           79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19Q12) MUTATED       16     13     47     21     39      2
  AMP PEAK 25(19Q12) WILD-TYPE     55     26     98    109     57     27
D25V10, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         16                           55
  CLUS_2                         13                           26
  CLUS_3                         47                           98
  CLUS_4                         21                          109
  CLUS_5                         39                           57
  CLUS_6                          2                           27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19Q12) MUTATED       11     31     23      7     22     27
  AMP PEAK 25(19Q12) WILD-TYPE     48     59     72     36     48     50
D25V11, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         11                           48
  CLUS_2                         31                           59
  CLUS_3                         23                           72
  CLUS_4                          7                           36
  CLUS_5                         22                           48
  CLUS_6                         27                           50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q12) MUTATED       23     83     15
  AMP PEAK 25(19Q12) WILD-TYPE     81    155     77
D25V12, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         23                           81
  CLUS_2                         83                          155
  CLUS_3                         15                           77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(20P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20P11.21) MUTATED        4      2      5
  AMP PEAK 26(20P11.21) WILD-TYPE     11      8      2
D26V1, multiclass
        clus
vv       AMP PEAK 26(20P11.21) MUTATED AMP PEAK 26(20P11.21) WILD-TYPE
  CLUS_1                             4                              11
  CLUS_2                             2                               8
  CLUS_3                             5                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20P11.21) MUTATED        3      3      5
  AMP PEAK 26(20P11.21) WILD-TYPE     11      8      2
D26V2, multiclass
        clus
vv       AMP PEAK 26(20P11.21) MUTATED AMP PEAK 26(20P11.21) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             3                               8
  CLUS_3                             5                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(20P11.21) MUTATED       77     64     16     44
  AMP PEAK 26(20P11.21) WILD-TYPE     95     74    116     30
D26V3, multiclass
        clus
vv       AMP PEAK 26(20P11.21) MUTATED AMP PEAK 26(20P11.21) WILD-TYPE
  CLUS_1                            77                              95
  CLUS_2                            64                              74
  CLUS_3                            16                             116
  CLUS_4                            44                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20P11.21) MUTATED       85     54     36
  AMP PEAK 26(20P11.21) WILD-TYPE     71    116     93
D26V4, multiclass
        clus
vv       AMP PEAK 26(20P11.21) MUTATED AMP PEAK 26(20P11.21) WILD-TYPE
  CLUS_1                            85                              71
  CLUS_2                            54                             116
  CLUS_3                            36                              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(20P11.21) MUTATED       34      9     21     36     41
  AMP PEAK 26(20P11.21) WILD-TYPE     57     13     45     39     68
D26V5, multiclass
        clus
vv       AMP PEAK 26(20P11.21) MUTATED AMP PEAK 26(20P11.21) WILD-TYPE
  CLUS_1                            34                              57
  CLUS_2                             9                              13
  CLUS_3                            21                              45
  CLUS_4                            36                              39
  CLUS_5                            41                              68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20P11.21) MUTATED       53     66     22
  AMP PEAK 26(20P11.21) WILD-TYPE    114     67     41
D26V6, multiclass
        clus
vv       AMP PEAK 26(20P11.21) MUTATED AMP PEAK 26(20P11.21) WILD-TYPE
  CLUS_1                            53                             114
  CLUS_2                            66                              67
  CLUS_3                            22                              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(20P11.21) MUTATED       46     33     32     67     19
  AMP PEAK 26(20P11.21) WILD-TYPE     84     86     58     48     39
D26V7, multiclass
        clus
vv       AMP PEAK 26(20P11.21) MUTATED AMP PEAK 26(20P11.21) WILD-TYPE
  CLUS_1                            46                              84
  CLUS_2                            33                              86
  CLUS_3                            32                              58
  CLUS_4                            67                              48
  CLUS_5                            19                              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(20P11.21) MUTATED       19     32     62     17     31     17
  AMP PEAK 26(20P11.21) WILD-TYPE     59     78     35     31     22     32
                                 vv
clus                              CLUS_7
  AMP PEAK 26(20P11.21) MUTATED       19
  AMP PEAK 26(20P11.21) WILD-TYPE     58
D26V8, multiclass
        clus
vv       AMP PEAK 26(20P11.21) MUTATED AMP PEAK 26(20P11.21) WILD-TYPE
  CLUS_1                            19                              59
  CLUS_2                            32                              78
  CLUS_3                            62                              35
  CLUS_4                            17                              31
  CLUS_5                            31                              22
  CLUS_6                            17                              32
  CLUS_7                            19                              58
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20P11.21) MUTATED       49    107     42
  AMP PEAK 26(20P11.21) WILD-TYPE    137    114     61
D26V9, multiclass
        clus
vv       AMP PEAK 26(20P11.21) MUTATED AMP PEAK 26(20P11.21) WILD-TYPE
  CLUS_1                            49                             137
  CLUS_2                           107                             114
  CLUS_3                            42                              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(20P11.21) MUTATED       19     18     58     36     56     11
  AMP PEAK 26(20P11.21) WILD-TYPE     52     21     87     94     40     18
D26V10, multiclass
        clus
vv       AMP PEAK 26(20P11.21) MUTATED AMP PEAK 26(20P11.21) WILD-TYPE
  CLUS_1                            19                              52
  CLUS_2                            18                              21
  CLUS_3                            58                              87
  CLUS_4                            36                              94
  CLUS_5                            56                              40
  CLUS_6                            11                              18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(20P11.21) MUTATED       16     49     28     21     26     29
  AMP PEAK 26(20P11.21) WILD-TYPE     43     41     67     22     44     48
D26V11, multiclass
        clus
vv       AMP PEAK 26(20P11.21) MUTATED AMP PEAK 26(20P11.21) WILD-TYPE
  CLUS_1                            16                              43
  CLUS_2                            49                              41
  CLUS_3                            28                              67
  CLUS_4                            21                              22
  CLUS_5                            26                              44
  CLUS_6                            29                              48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20P11.21) MUTATED       29    112     28
  AMP PEAK 26(20P11.21) WILD-TYPE     75    126     64
D26V12, multiclass
        clus
vv       AMP PEAK 26(20P11.21) MUTATED AMP PEAK 26(20P11.21) WILD-TYPE
  CLUS_1                            29                              75
  CLUS_2                           112                             126
  CLUS_3                            28                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.33) MUTATED        5      4      6
  AMP PEAK 27(20Q13.33) WILD-TYPE     10      6      1
D27V1, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                             5                              10
  CLUS_2                             4                               6
  CLUS_3                             6                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.33) MUTATED        4      5      6
  AMP PEAK 27(20Q13.33) WILD-TYPE     10      6      1
D27V2, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             5                               6
  CLUS_3                             6                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20Q13.33) MUTATED       98     77     24     52
  AMP PEAK 27(20Q13.33) WILD-TYPE     74     61    108     22
D27V3, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            98                              74
  CLUS_2                            77                              61
  CLUS_3                            24                             108
  CLUS_4                            52                              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.33) MUTATED       94     78     47
  AMP PEAK 27(20Q13.33) WILD-TYPE     62     92     82
D27V4, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            94                              62
  CLUS_2                            78                              92
  CLUS_3                            47                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(20Q13.33) MUTATED       48      9     28     48     49
  AMP PEAK 27(20Q13.33) WILD-TYPE     43     13     38     27     60
D27V5, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            48                              43
  CLUS_2                             9                              13
  CLUS_3                            28                              38
  CLUS_4                            48                              27
  CLUS_5                            49                              60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.33) MUTATED       68     82     32
  AMP PEAK 27(20Q13.33) WILD-TYPE     99     51     31
D27V6, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            68                              99
  CLUS_2                            82                              51
  CLUS_3                            32                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(20Q13.33) MUTATED       68     41     34     82     22
  AMP PEAK 27(20Q13.33) WILD-TYPE     62     78     56     33     36
D27V7, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            68                              62
  CLUS_2                            41                              78
  CLUS_3                            34                              56
  CLUS_4                            82                              33
  CLUS_5                            22                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(20Q13.33) MUTATED       27     51     68     22     38     18
  AMP PEAK 27(20Q13.33) WILD-TYPE     51     59     29     26     15     31
                                 vv
clus                              CLUS_7
  AMP PEAK 27(20Q13.33) MUTATED       23
  AMP PEAK 27(20Q13.33) WILD-TYPE     54
D27V8, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            27                              51
  CLUS_2                            51                              59
  CLUS_3                            68                              29
  CLUS_4                            22                              26
  CLUS_5                            38                              15
  CLUS_6                            18                              31
  CLUS_7                            23                              54
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.33) MUTATED       64    136     46
  AMP PEAK 27(20Q13.33) WILD-TYPE    122     85     57
D27V9, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            64                             122
  CLUS_2                           136                              85
  CLUS_3                            46                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(20Q13.33) MUTATED       25     26     77     43     62     13
  AMP PEAK 27(20Q13.33) WILD-TYPE     46     13     68     87     34     16
D27V10, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            25                              46
  CLUS_2                            26                              13
  CLUS_3                            77                              68
  CLUS_4                            43                              87
  CLUS_5                            62                              34
  CLUS_6                            13                              16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(20Q13.33) MUTATED       18     62     37     21     30     39
  AMP PEAK 27(20Q13.33) WILD-TYPE     41     28     58     22     40     38
D27V11, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            18                              41
  CLUS_2                            62                              28
  CLUS_3                            37                              58
  CLUS_4                            21                              22
  CLUS_5                            30                              40
  CLUS_6                            39                              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.33) MUTATED       32    137     38
  AMP PEAK 27(20Q13.33) WILD-TYPE     72    101     54
D27V12, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            32                              72
  CLUS_2                           137                             101
  CLUS_3                            38                              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(22Q11.22) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(22Q11.22) MUTATED        2      2      3
  AMP PEAK 28(22Q11.22) WILD-TYPE     13      8      4
D28V1, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                             2                              13
  CLUS_2                             2                               8
  CLUS_3                             3                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(22Q11.22) MUTATED        1      3      3
  AMP PEAK 28(22Q11.22) WILD-TYPE     13      8      4
D28V2, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             3                               8
  CLUS_3                             3                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(22Q11.22) MUTATED       41     25     12     12
  AMP PEAK 28(22Q11.22) WILD-TYPE    131    113    120     62
D28V3, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            41                             131
  CLUS_2                            25                             113
  CLUS_3                            12                             120
  CLUS_4                            12                              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(22Q11.22) MUTATED       33     28     19
  AMP PEAK 28(22Q11.22) WILD-TYPE    123    142    110
D28V4, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            33                             123
  CLUS_2                            28                             142
  CLUS_3                            19                             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(22Q11.22) MUTATED       17      3     12     20     15
  AMP PEAK 28(22Q11.22) WILD-TYPE     74     19     54     55     94
D28V5, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            17                              74
  CLUS_2                             3                              19
  CLUS_3                            12                              54
  CLUS_4                            20                              55
  CLUS_5                            15                              94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(22Q11.22) MUTATED       30     31      6
  AMP PEAK 28(22Q11.22) WILD-TYPE    137    102     57
D28V6, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            30                             137
  CLUS_2                            31                             102
  CLUS_3                             6                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(22Q11.22) MUTATED       30     14     13     20     12
  AMP PEAK 28(22Q11.22) WILD-TYPE    100    105     77     95     46
D28V7, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            30                             100
  CLUS_2                            14                             105
  CLUS_3                            13                              77
  CLUS_4                            20                              95
  CLUS_5                            12                              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(22Q11.22) MUTATED        9     22     26      4      9      9
  AMP PEAK 28(22Q11.22) WILD-TYPE     69     88     71     44     44     40
                                 vv
clus                              CLUS_7
  AMP PEAK 28(22Q11.22) MUTATED       10
  AMP PEAK 28(22Q11.22) WILD-TYPE     67
D28V8, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                             9                              69
  CLUS_2                            22                              88
  CLUS_3                            26                              71
  CLUS_4                             4                              44
  CLUS_5                             9                              44
  CLUS_6                             9                              40
  CLUS_7                            10                              67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(22Q11.22) MUTATED       23     48     19
  AMP PEAK 28(22Q11.22) WILD-TYPE    163    173     84
D28V9, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            23                             163
  CLUS_2                            48                             173
  CLUS_3                            19                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(22Q11.22) MUTATED       11      4     27     17     27      4
  AMP PEAK 28(22Q11.22) WILD-TYPE     60     35    118    113     69     25
D28V10, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            11                              60
  CLUS_2                             4                              35
  CLUS_3                            27                             118
  CLUS_4                            17                             113
  CLUS_5                            27                              69
  CLUS_6                             4                              25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(22Q11.22) MUTATED        6     24     22      4      9     13
  AMP PEAK 28(22Q11.22) WILD-TYPE     53     66     73     39     61     64
D28V11, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                             6                              53
  CLUS_2                            24                              66
  CLUS_3                            22                              73
  CLUS_4                             4                              39
  CLUS_5                             9                              61
  CLUS_6                            13                              64
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(22Q11.22) MUTATED       10     51     17
  AMP PEAK 28(22Q11.22) WILD-TYPE     94    187     75
D28V12, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            10                              94
  CLUS_2                            51                             187
  CLUS_3                            17                              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED        4      4      5
  AMP PEAK 29(XQ28) WILD-TYPE     11      6      2
D29V1, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                         4                          11
  CLUS_2                         4                           6
  CLUS_3                         5                           2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED        4      4      5
  AMP PEAK 29(XQ28) WILD-TYPE     10      7      2
D29V2, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                         4                          10
  CLUS_2                         4                           7
  CLUS_3                         5                           2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(XQ28) MUTATED       70     42     21     26
  AMP PEAK 29(XQ28) WILD-TYPE    102     96    111     48
D29V3, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        70                         102
  CLUS_2                        42                          96
  CLUS_3                        21                         111
  CLUS_4                        26                          48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED       48     61     27
  AMP PEAK 29(XQ28) WILD-TYPE    108    109    102
D29V4, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        48                         108
  CLUS_2                        61                         109
  CLUS_3                        27                         102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(XQ28) MUTATED       38      4     15     29     30
  AMP PEAK 29(XQ28) WILD-TYPE     53     18     51     46     79
D29V5, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        38                          53
  CLUS_2                         4                          18
  CLUS_3                        15                          51
  CLUS_4                        29                          46
  CLUS_5                        30                          79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED       47     50     19
  AMP PEAK 29(XQ28) WILD-TYPE    120     83     44
D29V6, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        47                         120
  CLUS_2                        50                          83
  CLUS_3                        19                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(XQ28) MUTATED       62     26     24     34     12
  AMP PEAK 29(XQ28) WILD-TYPE     68     93     66     81     46
D29V7, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        62                          68
  CLUS_2                        26                          93
  CLUS_3                        24                          66
  CLUS_4                        34                          81
  CLUS_5                        12                          46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 29(XQ28) MUTATED       20     50     38      6     14     14     16
  AMP PEAK 29(XQ28) WILD-TYPE     58     60     59     42     39     35     61
D29V8, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        20                          58
  CLUS_2                        50                          60
  CLUS_3                        38                          59
  CLUS_4                         6                          42
  CLUS_5                        14                          39
  CLUS_6                        14                          35
  CLUS_7                        16                          61
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED       43     73     40
  AMP PEAK 29(XQ28) WILD-TYPE    143    148     63
D29V9, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        43                         143
  CLUS_2                        73                         148
  CLUS_3                        40                          63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(XQ28) MUTATED       17     12     56     33     32      6
  AMP PEAK 29(XQ28) WILD-TYPE     54     27     89     97     64     23
D29V10, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        17                          54
  CLUS_2                        12                          27
  CLUS_3                        56                          89
  CLUS_4                        33                          97
  CLUS_5                        32                          64
  CLUS_6                         6                          23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(XQ28) MUTATED        9     32     36      9     21     24
  AMP PEAK 29(XQ28) WILD-TYPE     50     58     59     34     49     53
D29V11, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                         9                          50
  CLUS_2                        32                          58
  CLUS_3                        36                          59
  CLUS_4                         9                          34
  CLUS_5                        21                          49
  CLUS_6                        24                          53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED       15     82     34
  AMP PEAK 29(XQ28) WILD-TYPE     89    156     58
D29V12, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        15                          89
  CLUS_2                        82                         156
  CLUS_3                        34                          58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  1(1P36.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED        2      4      3
  DEL PEAK  1(1P36.13) WILD-TYPE     13      6      4
D30V1, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                            4                              6
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED        2      4      3
  DEL PEAK  1(1P36.13) WILD-TYPE     12      7      4
D30V2, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              7
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.13) MUTATED       16     51     18     37
  DEL PEAK  1(1P36.13) WILD-TYPE    156     87    114     37
D30V3, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           16                            156
  CLUS_2                           51                             87
  CLUS_3                           18                            114
  CLUS_4                           37                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED       44     47     13
  DEL PEAK  1(1P36.13) WILD-TYPE    112    123    116
D30V4, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           44                            112
  CLUS_2                           47                            123
  CLUS_3                           13                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       18      3     19     26     25
  DEL PEAK  1(1P36.13) WILD-TYPE     73     19     47     49     84
D30V5, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           18                             73
  CLUS_2                            3                             19
  CLUS_3                           19                             47
  CLUS_4                           26                             49
  CLUS_5                           25                             84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED       41     39     11
  DEL PEAK  1(1P36.13) WILD-TYPE    126     94     52
D30V6, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           41                            126
  CLUS_2                           39                             94
  CLUS_3                           11                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       24     16     32     41      6
  DEL PEAK  1(1P36.13) WILD-TYPE    106    103     58     74     52
D30V7, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           24                            106
  CLUS_2                           16                            103
  CLUS_3                           32                             58
  CLUS_4                           41                             74
  CLUS_5                            6                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED       11     27     20     11     26     18
  DEL PEAK  1(1P36.13) WILD-TYPE     67     83     77     37     27     31
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.13) MUTATED        6
  DEL PEAK  1(1P36.13) WILD-TYPE     71
D30V8, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           11                             67
  CLUS_2                           27                             83
  CLUS_3                           20                             77
  CLUS_4                           11                             37
  CLUS_5                           26                             27
  CLUS_6                           18                             31
  CLUS_7                            6                             71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED       37     64     17
  DEL PEAK  1(1P36.13) WILD-TYPE    149    157     86
D30V9, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           37                            149
  CLUS_2                           64                            157
  CLUS_3                           17                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED       17     18     33     24     23      3
  DEL PEAK  1(1P36.13) WILD-TYPE     54     21    112    106     73     26
D30V10, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           17                             54
  CLUS_2                           18                             21
  CLUS_3                           33                            112
  CLUS_4                           24                            106
  CLUS_5                           23                             73
  CLUS_6                            3                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED        4     29     25      8     19     12
  DEL PEAK  1(1P36.13) WILD-TYPE     55     61     70     35     51     65
D30V11, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            4                             55
  CLUS_2                           29                             61
  CLUS_3                           25                             70
  CLUS_4                            8                             35
  CLUS_5                           19                             51
  CLUS_6                           12                             65
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED       18     63     16
  DEL PEAK  1(1P36.13) WILD-TYPE     86    175     76
D30V12, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           18                             86
  CLUS_2                           63                            175
  CLUS_3                           16                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  2(1P13.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED        3      5      3
  DEL PEAK  2(1P13.1) WILD-TYPE     12      5      4
D31V1, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           3                            12
  CLUS_2                           5                             5
  CLUS_3                           3                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED        3      5      3
  DEL PEAK  2(1P13.1) WILD-TYPE     11      6      4
D31V2, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           5                             6
  CLUS_3                           3                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED       33     52     27     39
  DEL PEAK  2(1P13.1) WILD-TYPE    139     86    105     35
D31V3, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          33                           139
  CLUS_2                          52                            86
  CLUS_3                          27                           105
  CLUS_4                          39                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       50     53     22
  DEL PEAK  2(1P13.1) WILD-TYPE    106    117    107
D31V4, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          50                           106
  CLUS_2                          53                           117
  CLUS_3                          22                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.1) MUTATED       18      8     23     29     29
  DEL PEAK  2(1P13.1) WILD-TYPE     73     14     43     46     80
D31V5, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          18                            73
  CLUS_2                           8                            14
  CLUS_3                          23                            43
  CLUS_4                          29                            46
  CLUS_5                          29                            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       46     44     17
  DEL PEAK  2(1P13.1) WILD-TYPE    121     89     46
D31V6, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          46                           121
  CLUS_2                          44                            89
  CLUS_3                          17                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.1) MUTATED       30     25     30     54     10
  DEL PEAK  2(1P13.1) WILD-TYPE    100     94     60     61     48
D31V7, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          30                           100
  CLUS_2                          25                            94
  CLUS_3                          30                            60
  CLUS_4                          54                            61
  CLUS_5                          10                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.1) MUTATED       21     28     27     20     27     17
  DEL PEAK  2(1P13.1) WILD-TYPE     57     82     70     28     26     32
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P13.1) MUTATED        9
  DEL PEAK  2(1P13.1) WILD-TYPE     68
D31V8, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          21                            57
  CLUS_2                          28                            82
  CLUS_3                          27                            70
  CLUS_4                          20                            28
  CLUS_5                          27                            26
  CLUS_6                          17                            32
  CLUS_7                           9                            68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       43     73     32
  DEL PEAK  2(1P13.1) WILD-TYPE    143    148     71
D31V9, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          43                           143
  CLUS_2                          73                           148
  CLUS_3                          32                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.1) MUTATED       14     25     37     30     29     13
  DEL PEAK  2(1P13.1) WILD-TYPE     57     14    108    100     67     16
D31V10, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          14                            57
  CLUS_2                          25                            14
  CLUS_3                          37                           108
  CLUS_4                          30                           100
  CLUS_5                          29                            67
  CLUS_6                          13                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.1) MUTATED       11     33     24     19     17     13
  DEL PEAK  2(1P13.1) WILD-TYPE     48     57     71     24     53     64
D31V11, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          11                            48
  CLUS_2                          33                            57
  CLUS_3                          24                            71
  CLUS_4                          19                            24
  CLUS_5                          17                            53
  CLUS_6                          13                            64
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       28     68     21
  DEL PEAK  2(1P13.1) WILD-TYPE     76    170     71
D31V12, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          28                            76
  CLUS_2                          68                           170
  CLUS_3                          21                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  3(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        3      1      0
  DEL PEAK  3(2Q22.1) WILD-TYPE     12      9      7
D32V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           3                            12
  CLUS_2                           1                             9
  CLUS_3                           0                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        3      1      0
  DEL PEAK  3(2Q22.1) WILD-TYPE     11     10      7
D32V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           1                            10
  CLUS_3                           0                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED       14     17      3     12
  DEL PEAK  3(2Q22.1) WILD-TYPE    158    121    129     62
D32V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          14                           158
  CLUS_2                          17                           121
  CLUS_3                           3                           129
  CLUS_4                          12                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       22     15      3
  DEL PEAK  3(2Q22.1) WILD-TYPE    134    155    126
D32V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          22                           134
  CLUS_2                          15                           155
  CLUS_3                           3                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        9      0      4     12      7
  DEL PEAK  3(2Q22.1) WILD-TYPE     82     22     62     63    102
D32V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           9                            82
  CLUS_2                           0                            22
  CLUS_3                           4                            62
  CLUS_4                          12                            63
  CLUS_5                           7                           102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        7     21      4
  DEL PEAK  3(2Q22.1) WILD-TYPE    160    112     59
D32V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           7                           160
  CLUS_2                          21                           112
  CLUS_3                           4                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED       12      7     11     14      2
  DEL PEAK  3(2Q22.1) WILD-TYPE    118    112     79    101     56
D32V7, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          12                           118
  CLUS_2                           7                           112
  CLUS_3                          11                            79
  CLUS_4                          14                           101
  CLUS_5                           2                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q22.1) MUTATED        6      9     10      2      8     10
  DEL PEAK  3(2Q22.1) WILD-TYPE     72    101     87     46     45     39
                               vv
clus                            CLUS_7
  DEL PEAK  3(2Q22.1) MUTATED        1
  DEL PEAK  3(2Q22.1) WILD-TYPE     76
D32V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           6                            72
  CLUS_2                           9                           101
  CLUS_3                          10                            87
  CLUS_4                           2                            46
  CLUS_5                           8                            45
  CLUS_6                          10                            39
  CLUS_7                           1                            76
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        8     26     11
  DEL PEAK  3(2Q22.1) WILD-TYPE    178    195     92
D32V9, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           8                           178
  CLUS_2                          26                           195
  CLUS_3                          11                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q22.1) MUTATED        4      4     13      6     17      1
  DEL PEAK  3(2Q22.1) WILD-TYPE     67     35    132    124     79     28
D32V10, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           4                            67
  CLUS_2                           4                            35
  CLUS_3                          13                           132
  CLUS_4                           6                           124
  CLUS_5                          17                            79
  CLUS_6                           1                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q22.1) MUTATED        2      8     11      5      5      5
  DEL PEAK  3(2Q22.1) WILD-TYPE     57     82     84     38     65     72
D32V11, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            57
  CLUS_2                           8                            82
  CLUS_3                          11                            84
  CLUS_4                           5                            38
  CLUS_5                           5                            65
  CLUS_6                           5                            72
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        3     26      7
  DEL PEAK  3(2Q22.1) WILD-TYPE    101    212     85
D32V12, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           3                           101
  CLUS_2                          26                           212
  CLUS_3                           7                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  4(3P26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED        5      3      5
  DEL PEAK  4(3P26.2) WILD-TYPE     10      7      2
D33V1, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                           5                            10
  CLUS_2                           3                             7
  CLUS_3                           5                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED        5      3      5
  DEL PEAK  4(3P26.2) WILD-TYPE      9      8      2
D33V2, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           3                             8
  CLUS_3                           5                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P26.2) MUTATED       93     74     23     43
  DEL PEAK  4(3P26.2) WILD-TYPE     79     64    109     31
D33V3, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          93                            79
  CLUS_2                          74                            64
  CLUS_3                          23                           109
  CLUS_4                          43                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED       89     71     45
  DEL PEAK  4(3P26.2) WILD-TYPE     67     99     84
D33V4, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          89                            67
  CLUS_2                          71                            99
  CLUS_3                          45                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P26.2) MUTATED       40      9     26     47     51
  DEL PEAK  4(3P26.2) WILD-TYPE     51     13     40     28     58
D33V5, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          40                            51
  CLUS_2                           9                            13
  CLUS_3                          26                            40
  CLUS_4                          47                            28
  CLUS_5                          51                            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED       66     75     32
  DEL PEAK  4(3P26.2) WILD-TYPE    101     58     31
D33V6, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          66                           101
  CLUS_2                          75                            58
  CLUS_3                          32                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P26.2) MUTATED       54     44     45     63     24
  DEL PEAK  4(3P26.2) WILD-TYPE     76     75     45     52     34
D33V7, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          54                            76
  CLUS_2                          44                            75
  CLUS_3                          45                            45
  CLUS_4                          63                            52
  CLUS_5                          24                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P26.2) MUTATED       30     40     65     15     35     26
  DEL PEAK  4(3P26.2) WILD-TYPE     48     70     32     33     18     23
                               vv
clus                            CLUS_7
  DEL PEAK  4(3P26.2) MUTATED       19
  DEL PEAK  4(3P26.2) WILD-TYPE     58
D33V8, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          30                            48
  CLUS_2                          40                            70
  CLUS_3                          65                            32
  CLUS_4                          15                            33
  CLUS_5                          35                            18
  CLUS_6                          26                            23
  CLUS_7                          19                            58
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED       61    112     55
  DEL PEAK  4(3P26.2) WILD-TYPE    125    109     48
D33V9, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          61                           125
  CLUS_2                         112                           109
  CLUS_3                          55                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P26.2) MUTATED       30     24     59     45     61      9
  DEL PEAK  4(3P26.2) WILD-TYPE     41     15     86     85     35     20
D33V10, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          30                            41
  CLUS_2                          24                            15
  CLUS_3                          59                            86
  CLUS_4                          45                            85
  CLUS_5                          61                            35
  CLUS_6                           9                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P26.2) MUTATED       20     52     45     20     30     31
  DEL PEAK  4(3P26.2) WILD-TYPE     39     38     50     23     40     46
D33V11, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          20                            39
  CLUS_2                          52                            38
  CLUS_3                          45                            50
  CLUS_4                          20                            23
  CLUS_5                          30                            40
  CLUS_6                          31                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED       31    128     39
  DEL PEAK  4(3P26.2) WILD-TYPE     73    110     53
D33V12, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          31                            73
  CLUS_2                         128                           110
  CLUS_3                          39                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  5(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED        4      6      4
  DEL PEAK  5(3P21.31) WILD-TYPE     11      4      3
D34V1, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            4                             11
  CLUS_2                            6                              4
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED        4      6      4
  DEL PEAK  5(3P21.31) WILD-TYPE     10      5      3
D34V2, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            6                              5
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       97     83     25     43
  DEL PEAK  5(3P21.31) WILD-TYPE     75     55    107     31
D34V3, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           97                             75
  CLUS_2                           83                             55
  CLUS_3                           25                            107
  CLUS_4                           43                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED      102     74     43
  DEL PEAK  5(3P21.31) WILD-TYPE     54     96     86
D34V4, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                          102                             54
  CLUS_2                           74                             96
  CLUS_3                           43                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P21.31) MUTATED       41      9     28     49     55
  DEL PEAK  5(3P21.31) WILD-TYPE     50     13     38     26     54
D34V5, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           41                             50
  CLUS_2                            9                             13
  CLUS_3                           28                             38
  CLUS_4                           49                             26
  CLUS_5                           55                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       68     81     33
  DEL PEAK  5(3P21.31) WILD-TYPE     99     52     30
D34V6, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           68                             99
  CLUS_2                           81                             52
  CLUS_3                           33                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P21.31) MUTATED       58     44     49     68     25
  DEL PEAK  5(3P21.31) WILD-TYPE     72     75     41     47     33
D34V7, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           58                             72
  CLUS_2                           44                             75
  CLUS_3                           49                             41
  CLUS_4                           68                             47
  CLUS_5                           25                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.31) MUTATED       28     45     70     15     37     29
  DEL PEAK  5(3P21.31) WILD-TYPE     50     65     27     33     16     20
                                vv
clus                             CLUS_7
  DEL PEAK  5(3P21.31) MUTATED       20
  DEL PEAK  5(3P21.31) WILD-TYPE     57
D34V8, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           28                             50
  CLUS_2                           45                             65
  CLUS_3                           70                             27
  CLUS_4                           15                             33
  CLUS_5                           37                             16
  CLUS_6                           29                             20
  CLUS_7                           20                             57
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       63    123     57
  DEL PEAK  5(3P21.31) WILD-TYPE    123     98     46
D34V9, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           63                            123
  CLUS_2                          123                             98
  CLUS_3                           57                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.31) MUTATED       32     27     63     45     65     11
  DEL PEAK  5(3P21.31) WILD-TYPE     39     12     82     85     31     18
D34V10, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           32                             39
  CLUS_2                           27                             12
  CLUS_3                           63                             82
  CLUS_4                           45                             85
  CLUS_5                           65                             31
  CLUS_6                           11                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.31) MUTATED       21     56     48     24     32     30
  DEL PEAK  5(3P21.31) WILD-TYPE     38     34     47     19     38     47
D34V11, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           21                             38
  CLUS_2                           56                             34
  CLUS_3                           48                             47
  CLUS_4                           24                             19
  CLUS_5                           32                             38
  CLUS_6                           30                             47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       32    137     42
  DEL PEAK  5(3P21.31) WILD-TYPE     72    101     50
D34V12, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           32                             72
  CLUS_2                          137                            101
  CLUS_3                           42                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  6(3Q11.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED        2      1      2
  DEL PEAK  6(3Q11.1) WILD-TYPE     13      9      5
D35V1, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                           2                            13
  CLUS_2                           1                             9
  CLUS_3                           2                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED        2      1      2
  DEL PEAK  6(3Q11.1) WILD-TYPE     12     10      5
D35V2, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           1                            10
  CLUS_3                           2                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q11.1) MUTATED       59     38     17     27
  DEL PEAK  6(3Q11.1) WILD-TYPE    113    100    115     47
D35V3, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          59                           113
  CLUS_2                          38                           100
  CLUS_3                          17                           115
  CLUS_4                          27                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED       56     49     27
  DEL PEAK  6(3Q11.1) WILD-TYPE    100    121    102
D35V4, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          56                           100
  CLUS_2                          49                           121
  CLUS_3                          27                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q11.1) MUTATED       19      5     17     29     31
  DEL PEAK  6(3Q11.1) WILD-TYPE     72     17     49     46     78
D35V5, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          19                            72
  CLUS_2                           5                            17
  CLUS_3                          17                            49
  CLUS_4                          29                            46
  CLUS_5                          31                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED       50     35     16
  DEL PEAK  6(3Q11.1) WILD-TYPE    117     98     47
D35V6, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          50                           117
  CLUS_2                          35                            98
  CLUS_3                          16                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q11.1) MUTATED       26     35     25     35     17
  DEL PEAK  6(3Q11.1) WILD-TYPE    104     84     65     80     41
D35V7, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          26                           104
  CLUS_2                          35                            84
  CLUS_3                          25                            65
  CLUS_4                          35                            80
  CLUS_5                          17                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3Q11.1) MUTATED       20     25     23     17     22     17
  DEL PEAK  6(3Q11.1) WILD-TYPE     58     85     74     31     31     32
                               vv
clus                            CLUS_7
  DEL PEAK  6(3Q11.1) MUTATED       14
  DEL PEAK  6(3Q11.1) WILD-TYPE     63
D35V8, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          20                            58
  CLUS_2                          25                            85
  CLUS_3                          23                            74
  CLUS_4                          17                            31
  CLUS_5                          22                            31
  CLUS_6                          17                            32
  CLUS_7                          14                            63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED       51     53     35
  DEL PEAK  6(3Q11.1) WILD-TYPE    135    168     68
D35V9, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          51                           135
  CLUS_2                          53                           168
  CLUS_3                          35                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3Q11.1) MUTATED       22     19     35     32     27      4
  DEL PEAK  6(3Q11.1) WILD-TYPE     49     20    110     98     69     25
D35V10, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          22                            49
  CLUS_2                          19                            20
  CLUS_3                          35                           110
  CLUS_4                          32                            98
  CLUS_5                          27                            69
  CLUS_6                           4                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3Q11.1) MUTATED       22     29     26     13     19     19
  DEL PEAK  6(3Q11.1) WILD-TYPE     37     61     69     30     51     58
D35V11, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          22                            37
  CLUS_2                          29                            61
  CLUS_3                          26                            69
  CLUS_4                          13                            30
  CLUS_5                          19                            51
  CLUS_6                          19                            58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED       27     76     25
  DEL PEAK  6(3Q11.1) WILD-TYPE     77    162     67
D35V12, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          27                            77
  CLUS_2                          76                           162
  CLUS_3                          25                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  7(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED        3      1      2
  DEL PEAK  7(3Q29) WILD-TYPE     12      9      5
D36V1, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                         3                          12
  CLUS_2                         1                           9
  CLUS_3                         2                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED        3      1      2
  DEL PEAK  7(3Q29) WILD-TYPE     11     10      5
D36V2, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                         3                          11
  CLUS_2                         1                          10
  CLUS_3                         2                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED       50     35     24     27
  DEL PEAK  7(3Q29) WILD-TYPE    122    103    108     47
D36V3, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        50                         122
  CLUS_2                        35                         103
  CLUS_3                        24                         108
  CLUS_4                        27                          47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       51     51     23
  DEL PEAK  7(3Q29) WILD-TYPE    105    119    106
D36V4, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        51                         105
  CLUS_2                        51                         119
  CLUS_3                        23                         106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q29) MUTATED       17      5     25     18     30
  DEL PEAK  7(3Q29) WILD-TYPE     74     17     41     57     79
D36V5, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        17                          74
  CLUS_2                         5                          17
  CLUS_3                        25                          41
  CLUS_4                        18                          57
  CLUS_5                        30                          79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       52     24     19
  DEL PEAK  7(3Q29) WILD-TYPE    115    109     44
D36V6, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        52                         115
  CLUS_2                        24                         109
  CLUS_3                        19                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q29) MUTATED       23     39     14     43     14
  DEL PEAK  7(3Q29) WILD-TYPE    107     80     76     72     44
D36V7, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        23                         107
  CLUS_2                        39                          80
  CLUS_3                        14                          76
  CLUS_4                        43                          72
  CLUS_5                        14                          44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  7(3Q29) MUTATED       24     20     13     23     29     13     11
  DEL PEAK  7(3Q29) WILD-TYPE     54     90     84     25     24     36     66
D36V8, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        24                          54
  CLUS_2                        20                          90
  CLUS_3                        13                          84
  CLUS_4                        23                          25
  CLUS_5                        29                          24
  CLUS_6                        13                          36
  CLUS_7                        11                          66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       52     53     29
  DEL PEAK  7(3Q29) WILD-TYPE    134    168     74
D36V9, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        52                         134
  CLUS_2                        53                         168
  CLUS_3                        29                          74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q29) MUTATED       26     20     35     29     18      6
  DEL PEAK  7(3Q29) WILD-TYPE     45     19    110    101     78     23
D36V10, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        26                          45
  CLUS_2                        20                          19
  CLUS_3                        35                         110
  CLUS_4                        29                         101
  CLUS_5                        18                          78
  CLUS_6                         6                          23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q29) MUTATED       20     37     19     13     18     12
  DEL PEAK  7(3Q29) WILD-TYPE     39     53     76     30     52     65
D36V11, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        20                          39
  CLUS_2                        37                          53
  CLUS_3                        19                          76
  CLUS_4                        13                          30
  CLUS_5                        18                          52
  CLUS_6                        12                          65
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       28     64     27
  DEL PEAK  7(3Q29) WILD-TYPE     76    174     65
D36V12, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        28                          76
  CLUS_2                        64                         174
  CLUS_3                        27                          65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  8(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED        1      3      2
  DEL PEAK  8(4P16.3) WILD-TYPE     14      7      5
D37V1, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           3                             7
  CLUS_3                           2                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED        1      3      2
  DEL PEAK  8(4P16.3) WILD-TYPE     13      8      5
D37V2, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           3                             8
  CLUS_3                           2                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED       41     47      9     33
  DEL PEAK  8(4P16.3) WILD-TYPE    131     91    123     41
D37V3, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          41                           131
  CLUS_2                          47                            91
  CLUS_3                           9                           123
  CLUS_4                          33                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       55     36     23
  DEL PEAK  8(4P16.3) WILD-TYPE    101    134    106
D37V4, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          55                           101
  CLUS_2                          36                           134
  CLUS_3                          23                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4P16.3) MUTATED       20      8     14     31     25
  DEL PEAK  8(4P16.3) WILD-TYPE     71     14     52     44     84
D37V5, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          20                            71
  CLUS_2                           8                            14
  CLUS_3                          14                            52
  CLUS_4                          31                            44
  CLUS_5                          25                            84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       43     45     10
  DEL PEAK  8(4P16.3) WILD-TYPE    124     88     53
D37V6, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          43                           124
  CLUS_2                          45                            88
  CLUS_3                          10                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4P16.3) MUTATED       33     13     21     46     16
  DEL PEAK  8(4P16.3) WILD-TYPE     97    106     69     69     42
D37V7, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          33                            97
  CLUS_2                          13                           106
  CLUS_3                          21                            69
  CLUS_4                          46                            69
  CLUS_5                          16                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4P16.3) MUTATED       13     22     43      5     23     11
  DEL PEAK  8(4P16.3) WILD-TYPE     65     88     54     43     30     38
                               vv
clus                            CLUS_7
  DEL PEAK  8(4P16.3) MUTATED       12
  DEL PEAK  8(4P16.3) WILD-TYPE     65
D37V8, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          13                            65
  CLUS_2                          22                            88
  CLUS_3                          43                            54
  CLUS_4                           5                            43
  CLUS_5                          23                            30
  CLUS_6                          11                            38
  CLUS_7                          12                            65
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       24     80     25
  DEL PEAK  8(4P16.3) WILD-TYPE    162    141     78
D37V9, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          24                           162
  CLUS_2                          80                           141
  CLUS_3                          25                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4P16.3) MUTATED        6     15     42     21     41      4
  DEL PEAK  8(4P16.3) WILD-TYPE     65     24    103    109     55     25
D37V10, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           6                            65
  CLUS_2                          15                            24
  CLUS_3                          42                           103
  CLUS_4                          21                           109
  CLUS_5                          41                            55
  CLUS_6                           4                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4P16.3) MUTATED        5     31     30     11     17     17
  DEL PEAK  8(4P16.3) WILD-TYPE     54     59     65     32     53     60
D37V11, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           5                            54
  CLUS_2                          31                            59
  CLUS_3                          30                            65
  CLUS_4                          11                            32
  CLUS_5                          17                            53
  CLUS_6                          17                            60
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       13     78     20
  DEL PEAK  8(4P16.3) WILD-TYPE     91    160     72
D37V12, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          13                            91
  CLUS_2                          78                           160
  CLUS_3                          20                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  9(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q22.1) MUTATED        2      2      6
  DEL PEAK  9(4Q22.1) WILD-TYPE     13      8      1
D38V1, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                           2                            13
  CLUS_2                           2                             8
  CLUS_3                           6                             1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q22.1) MUTATED        2      2      6
  DEL PEAK  9(4Q22.1) WILD-TYPE     12      9      1
D38V2, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           2                             9
  CLUS_3                           6                             1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q22.1) MUTATED       50     65      9     34
  DEL PEAK  9(4Q22.1) WILD-TYPE    122     73    123     40
D38V3, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          50                           122
  CLUS_2                          65                            73
  CLUS_3                           9                           123
  CLUS_4                          34                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q22.1) MUTATED       71     40     23
  DEL PEAK  9(4Q22.1) WILD-TYPE     85    130    106
D38V4, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          71                            85
  CLUS_2                          40                           130
  CLUS_3                          23                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q22.1) MUTATED       27      6     16     36     30
  DEL PEAK  9(4Q22.1) WILD-TYPE     64     16     50     39     79
D38V5, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          27                            64
  CLUS_2                           6                            16
  CLUS_3                          16                            50
  CLUS_4                          36                            39
  CLUS_5                          30                            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q22.1) MUTATED       52     53     10
  DEL PEAK  9(4Q22.1) WILD-TYPE    115     80     53
D38V6, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          52                           115
  CLUS_2                          53                            80
  CLUS_3                          10                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q22.1) MUTATED       41     13     33     54     16
  DEL PEAK  9(4Q22.1) WILD-TYPE     89    106     57     61     42
D38V7, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          41                            89
  CLUS_2                          13                           106
  CLUS_3                          33                            57
  CLUS_4                          54                            61
  CLUS_5                          16                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q22.1) MUTATED       13     22     47      6     29     26
  DEL PEAK  9(4Q22.1) WILD-TYPE     65     88     50     42     24     23
                               vv
clus                            CLUS_7
  DEL PEAK  9(4Q22.1) MUTATED       14
  DEL PEAK  9(4Q22.1) WILD-TYPE     63
D38V8, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          13                            65
  CLUS_2                          22                            88
  CLUS_3                          47                            50
  CLUS_4                           6                            42
  CLUS_5                          29                            24
  CLUS_6                          26                            23
  CLUS_7                          14                            63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q22.1) MUTATED       30     93     34
  DEL PEAK  9(4Q22.1) WILD-TYPE    156    128     69
D38V9, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          30                           156
  CLUS_2                          93                           128
  CLUS_3                          34                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q22.1) MUTATED       12     16     52     24     47      6
  DEL PEAK  9(4Q22.1) WILD-TYPE     59     23     93    106     49     23
D38V10, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          12                            59
  CLUS_2                          16                            23
  CLUS_3                          52                            93
  CLUS_4                          24                           106
  CLUS_5                          47                            49
  CLUS_6                           6                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q22.1) MUTATED        7     38     28     15     22     20
  DEL PEAK  9(4Q22.1) WILD-TYPE     52     52     67     28     48     57
D38V11, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                           7                            52
  CLUS_2                          38                            52
  CLUS_3                          28                            67
  CLUS_4                          15                            28
  CLUS_5                          22                            48
  CLUS_6                          20                            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q22.1) MUTATED       20     90     20
  DEL PEAK  9(4Q22.1) WILD-TYPE     84    148     72
D38V12, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          20                            84
  CLUS_2                          90                           148
  CLUS_3                          20                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 10(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q34.3) MUTATED        2      2      6
  DEL PEAK 10(4Q34.3) WILD-TYPE     13      8      1
D39V1, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           2                            13
  CLUS_2                           2                             8
  CLUS_3                           6                             1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q34.3) MUTATED        2      2      6
  DEL PEAK 10(4Q34.3) WILD-TYPE     12      9      1
D39V2, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           2                             9
  CLUS_3                           6                             1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q34.3) MUTATED       57     77     13     40
  DEL PEAK 10(4Q34.3) WILD-TYPE    115     61    119     34
D39V3, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          57                           115
  CLUS_2                          77                            61
  CLUS_3                          13                           119
  CLUS_4                          40                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q34.3) MUTATED       86     50     26
  DEL PEAK 10(4Q34.3) WILD-TYPE     70    120    103
D39V4, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          86                            70
  CLUS_2                          50                           120
  CLUS_3                          26                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q34.3) MUTATED       31      7     20     40     38
  DEL PEAK 10(4Q34.3) WILD-TYPE     60     15     46     35     71
D39V5, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          31                            60
  CLUS_2                           7                            15
  CLUS_3                          20                            46
  CLUS_4                          40                            35
  CLUS_5                          38                            71
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q34.3) MUTATED       55     65     16
  DEL PEAK 10(4Q34.3) WILD-TYPE    112     68     47
D39V6, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          55                           112
  CLUS_2                          65                            68
  CLUS_3                          16                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q34.3) MUTATED       46     16     40     67     16
  DEL PEAK 10(4Q34.3) WILD-TYPE     84    103     50     48     42
D39V7, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          46                            84
  CLUS_2                          16                           103
  CLUS_3                          40                            50
  CLUS_4                          67                            48
  CLUS_5                          16                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q34.3) MUTATED       15     25     56      8     36     29
  DEL PEAK 10(4Q34.3) WILD-TYPE     63     85     41     40     17     20
                               vv
clus                            CLUS_7
  DEL PEAK 10(4Q34.3) MUTATED       16
  DEL PEAK 10(4Q34.3) WILD-TYPE     61
D39V8, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          15                            63
  CLUS_2                          25                            85
  CLUS_3                          56                            41
  CLUS_4                           8                            40
  CLUS_5                          36                            17
  CLUS_6                          29                            20
  CLUS_7                          16                            61
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q34.3) MUTATED       38    113     34
  DEL PEAK 10(4Q34.3) WILD-TYPE    148    108     69
D39V9, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          38                           148
  CLUS_2                         113                           108
  CLUS_3                          34                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q34.3) MUTATED       13     21     61     26     60      4
  DEL PEAK 10(4Q34.3) WILD-TYPE     58     18     84    104     36     25
D39V10, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          13                            58
  CLUS_2                          21                            18
  CLUS_3                          61                            84
  CLUS_4                          26                           104
  CLUS_5                          60                            36
  CLUS_6                           4                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q34.3) MUTATED        7     48     37     15     28     24
  DEL PEAK 10(4Q34.3) WILD-TYPE     52     42     58     28     42     53
D39V11, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                           7                            52
  CLUS_2                          48                            42
  CLUS_3                          37                            58
  CLUS_4                          15                            28
  CLUS_5                          28                            42
  CLUS_6                          24                            53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q34.3) MUTATED       22    115     22
  DEL PEAK 10(4Q34.3) WILD-TYPE     82    123     70
D39V12, multiclass
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  CLUS_1                          22                            82
  CLUS_2                         115                           123
  CLUS_3                          22                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 11(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q12.1) MUTATED        5      4      5
  DEL PEAK 11(5Q12.1) WILD-TYPE     10      6      2
D40V1, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                           5                            10
  CLUS_2                           4                             6
  CLUS_3                           5                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q12.1) MUTATED        4      5      5
  DEL PEAK 11(5Q12.1) WILD-TYPE     10      6      2
D40V2, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           5                             6
  CLUS_3                           5                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q12.1) MUTATED       78     59      5     37
  DEL PEAK 11(5Q12.1) WILD-TYPE     94     79    127     37
D40V3, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          78                            94
  CLUS_2                          59                            79
  CLUS_3                           5                           127
  CLUS_4                          37                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q12.1) MUTATED       74     57     21
  DEL PEAK 11(5Q12.1) WILD-TYPE     82    113    108
D40V4, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          74                            82
  CLUS_2                          57                           113
  CLUS_3                          21                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q12.1) MUTATED       32      8     13     44     28
  DEL PEAK 11(5Q12.1) WILD-TYPE     59     14     53     31     81
D40V5, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          32                            59
  CLUS_2                           8                            14
  CLUS_3                          13                            53
  CLUS_4                          44                            31
  CLUS_5                          28                            81
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q12.1) MUTATED       40     66     19
  DEL PEAK 11(5Q12.1) WILD-TYPE    127     67     44
D40V6, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          40                           127
  CLUS_2                          66                            67
  CLUS_3                          19                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q12.1) MUTATED       58     20     28     56     15
  DEL PEAK 11(5Q12.1) WILD-TYPE     72     99     62     59     43
D40V7, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          58                            72
  CLUS_2                          20                            99
  CLUS_3                          28                            62
  CLUS_4                          56                            59
  CLUS_5                          15                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q12.1) MUTATED       13     40     51      7     25     24
  DEL PEAK 11(5Q12.1) WILD-TYPE     65     70     46     41     28     25
                               vv
clus                            CLUS_7
  DEL PEAK 11(5Q12.1) MUTATED       17
  DEL PEAK 11(5Q12.1) WILD-TYPE     60
D40V8, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          13                            65
  CLUS_2                          40                            70
  CLUS_3                          51                            46
  CLUS_4                           7                            41
  CLUS_5                          25                            28
  CLUS_6                          24                            25
  CLUS_7                          17                            60
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q12.1) MUTATED       36    108     31
  DEL PEAK 11(5Q12.1) WILD-TYPE    150    113     72
D40V9, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          36                           150
  CLUS_2                         108                           113
  CLUS_3                          31                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q12.1) MUTATED       10     18     57     30     55      5
  DEL PEAK 11(5Q12.1) WILD-TYPE     61     21     88    100     41     24
D40V10, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          10                            61
  CLUS_2                          18                            21
  CLUS_3                          57                            88
  CLUS_4                          30                           100
  CLUS_5                          55                            41
  CLUS_6                           5                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q12.1) MUTATED        5     50     31     12     22     28
  DEL PEAK 11(5Q12.1) WILD-TYPE     54     40     64     31     48     49
D40V11, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                           5                            54
  CLUS_2                          50                            40
  CLUS_3                          31                            64
  CLUS_4                          12                            31
  CLUS_5                          22                            48
  CLUS_6                          28                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q12.1) MUTATED       15    109     24
  DEL PEAK 11(5Q12.1) WILD-TYPE     89    129     68
D40V12, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          15                            89
  CLUS_2                         109                           129
  CLUS_3                          24                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 12(5Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q31.1) MUTATED        4      4      5
  DEL PEAK 12(5Q31.1) WILD-TYPE     11      6      2
D41V1, multiclass
        clus
vv       DEL PEAK 12(5Q31.1) MUTATED DEL PEAK 12(5Q31.1) WILD-TYPE
  CLUS_1                           4                            11
  CLUS_2                           4                             6
  CLUS_3                           5                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q31.1) MUTATED        4      4      5
  DEL PEAK 12(5Q31.1) WILD-TYPE     10      7      2
D41V2, multiclass
        clus
vv       DEL PEAK 12(5Q31.1) MUTATED DEL PEAK 12(5Q31.1) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           4                             7
  CLUS_3                           5                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q31.1) MUTATED       82     74     12     43
  DEL PEAK 12(5Q31.1) WILD-TYPE     90     64    120     31
D41V3, multiclass
        clus
vv       DEL PEAK 12(5Q31.1) MUTATED DEL PEAK 12(5Q31.1) WILD-TYPE
  CLUS_1                          82                            90
  CLUS_2                          74                            64
  CLUS_3                          12                           120
  CLUS_4                          43                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q31.1) MUTATED       85     75     24
  DEL PEAK 12(5Q31.1) WILD-TYPE     71     95    105
D41V4, multiclass
        clus
vv       DEL PEAK 12(5Q31.1) MUTATED DEL PEAK 12(5Q31.1) WILD-TYPE
  CLUS_1                          85                            71
  CLUS_2                          75                            95
  CLUS_3                          24                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q31.1) MUTATED       39      9     18     50     35
  DEL PEAK 12(5Q31.1) WILD-TYPE     52     13     48     25     74
D41V5, multiclass
        clus
vv       DEL PEAK 12(5Q31.1) MUTATED DEL PEAK 12(5Q31.1) WILD-TYPE
  CLUS_1                          39                            52
  CLUS_2                           9                            13
  CLUS_3                          18                            48
  CLUS_4                          50                            25
  CLUS_5                          35                            74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q31.1) MUTATED       51     74     26
  DEL PEAK 12(5Q31.1) WILD-TYPE    116     59     37
D41V6, multiclass
        clus
vv       DEL PEAK 12(5Q31.1) MUTATED DEL PEAK 12(5Q31.1) WILD-TYPE
  CLUS_1                          51                           116
  CLUS_2                          74                            59
  CLUS_3                          26                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q31.1) MUTATED       65     25     36     65     18
  DEL PEAK 12(5Q31.1) WILD-TYPE     65     94     54     50     40
D41V7, multiclass
        clus
vv       DEL PEAK 12(5Q31.1) MUTATED DEL PEAK 12(5Q31.1) WILD-TYPE
  CLUS_1                          65                            65
  CLUS_2                          25                            94
  CLUS_3                          36                            54
  CLUS_4                          65                            50
  CLUS_5                          18                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q31.1) MUTATED       14     52     53     11     31     27
  DEL PEAK 12(5Q31.1) WILD-TYPE     64     58     44     37     22     22
                               vv
clus                            CLUS_7
  DEL PEAK 12(5Q31.1) MUTATED       21
  DEL PEAK 12(5Q31.1) WILD-TYPE     56
D41V8, multiclass
        clus
vv       DEL PEAK 12(5Q31.1) MUTATED DEL PEAK 12(5Q31.1) WILD-TYPE
  CLUS_1                          14                            64
  CLUS_2                          52                            58
  CLUS_3                          53                            44
  CLUS_4                          11                            37
  CLUS_5                          31                            22
  CLUS_6                          27                            22
  CLUS_7                          21                            56
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q31.1) MUTATED       47    123     37
  DEL PEAK 12(5Q31.1) WILD-TYPE    139     98     66
D41V9, multiclass
        clus
vv       DEL PEAK 12(5Q31.1) MUTATED DEL PEAK 12(5Q31.1) WILD-TYPE
  CLUS_1                          47                           139
  CLUS_2                         123                            98
  CLUS_3                          37                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q31.1) MUTATED       16     17     72     33     63      6
  DEL PEAK 12(5Q31.1) WILD-TYPE     55     22     73     97     33     23
D41V10, multiclass
        clus
vv       DEL PEAK 12(5Q31.1) MUTATED DEL PEAK 12(5Q31.1) WILD-TYPE
  CLUS_1                          16                            55
  CLUS_2                          17                            22
  CLUS_3                          72                            73
  CLUS_4                          33                            97
  CLUS_5                          63                            33
  CLUS_6                           6                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q31.1) MUTATED        8     56     44     15     21     35
  DEL PEAK 12(5Q31.1) WILD-TYPE     51     34     51     28     49     42
D41V11, multiclass
        clus
vv       DEL PEAK 12(5Q31.1) MUTATED DEL PEAK 12(5Q31.1) WILD-TYPE
  CLUS_1                           8                            51
  CLUS_2                          56                            34
  CLUS_3                          44                            51
  CLUS_4                          15                            28
  CLUS_5                          21                            49
  CLUS_6                          35                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q31.1) MUTATED       21    124     34
  DEL PEAK 12(5Q31.1) WILD-TYPE     83    114     58
D41V12, multiclass
        clus
vv       DEL PEAK 12(5Q31.1) MUTATED DEL PEAK 12(5Q31.1) WILD-TYPE
  CLUS_1                          21                            83
  CLUS_2                         124                           114
  CLUS_3                          34                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 13(6Q14.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q14.3) MUTATED        7      4      4
  DEL PEAK 13(6Q14.3) WILD-TYPE      8      6      3
D42V1, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                           7                             8
  CLUS_2                           4                             6
  CLUS_3                           4                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q14.3) MUTATED        7      4      4
  DEL PEAK 13(6Q14.3) WILD-TYPE      7      7      3
D42V2, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                           7                             7
  CLUS_2                           4                             7
  CLUS_3                           4                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q14.3) MUTATED       82     64     59     48
  DEL PEAK 13(6Q14.3) WILD-TYPE     90     74     73     26
D42V3, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          82                            90
  CLUS_2                          64                            74
  CLUS_3                          59                            73
  CLUS_4                          48                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q14.3) MUTATED       73    109     45
  DEL PEAK 13(6Q14.3) WILD-TYPE     83     61     84
D42V4, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          73                            83
  CLUS_2                         109                            61
  CLUS_3                          45                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q14.3) MUTATED       42      8     37     32     54
  DEL PEAK 13(6Q14.3) WILD-TYPE     49     14     29     43     55
D42V5, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          42                            49
  CLUS_2                           8                            14
  CLUS_3                          37                            29
  CLUS_4                          32                            43
  CLUS_5                          54                            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q14.3) MUTATED       79     58     36
  DEL PEAK 13(6Q14.3) WILD-TYPE     88     75     27
D42V6, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          79                            88
  CLUS_2                          58                            75
  CLUS_3                          36                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q14.3) MUTATED       70     55     36     62     27
  DEL PEAK 13(6Q14.3) WILD-TYPE     60     64     54     53     31
D42V7, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          70                            60
  CLUS_2                          55                            64
  CLUS_3                          36                            54
  CLUS_4                          62                            53
  CLUS_5                          27                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q14.3) MUTATED       32     58     38     35     34     21
  DEL PEAK 13(6Q14.3) WILD-TYPE     46     52     59     13     19     28
                               vv
clus                            CLUS_7
  DEL PEAK 13(6Q14.3) MUTATED       32
  DEL PEAK 13(6Q14.3) WILD-TYPE     45
D42V8, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          32                            46
  CLUS_2                          58                            52
  CLUS_3                          38                            59
  CLUS_4                          35                            13
  CLUS_5                          34                            19
  CLUS_6                          21                            28
  CLUS_7                          32                            45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q14.3) MUTATED       84    110     56
  DEL PEAK 13(6Q14.3) WILD-TYPE    102    111     47
D42V9, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          84                           102
  CLUS_2                         110                           111
  CLUS_3                          56                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q14.3) MUTATED       35     22     88     50     38     17
  DEL PEAK 13(6Q14.3) WILD-TYPE     36     17     57     80     58     12
D42V10, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          35                            36
  CLUS_2                          22                            17
  CLUS_3                          88                            57
  CLUS_4                          50                            80
  CLUS_5                          38                            58
  CLUS_6                          17                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q14.3) MUTATED       23     51     44     24     32     39
  DEL PEAK 13(6Q14.3) WILD-TYPE     36     39     51     19     38     38
D42V11, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          23                            36
  CLUS_2                          51                            39
  CLUS_3                          44                            51
  CLUS_4                          24                            19
  CLUS_5                          32                            38
  CLUS_6                          39                            38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q14.3) MUTATED       43    117     53
  DEL PEAK 13(6Q14.3) WILD-TYPE     61    121     39
D42V12, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          43                            61
  CLUS_2                         117                           121
  CLUS_3                          53                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 14(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED        7      6      6
  DEL PEAK 14(6Q26) WILD-TYPE      8      4      1
D43V1, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                         7                           8
  CLUS_2                         6                           4
  CLUS_3                         6                           1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED        7      6      6
  DEL PEAK 14(6Q26) WILD-TYPE      7      5      1
D43V2, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                         7                           7
  CLUS_2                         6                           5
  CLUS_3                         6                           1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(6Q26) MUTATED       77     70     65     46
  DEL PEAK 14(6Q26) WILD-TYPE     95     68     67     28
D43V3, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        77                          95
  CLUS_2                        70                          68
  CLUS_3                        65                          67
  CLUS_4                        46                          28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       72    108     46
  DEL PEAK 14(6Q26) WILD-TYPE     84     62     83
D43V4, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        72                          84
  CLUS_2                       108                          62
  CLUS_3                        46                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(6Q26) MUTATED       45      7     33     33     61
  DEL PEAK 14(6Q26) WILD-TYPE     46     15     33     42     48
D43V5, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        45                          46
  CLUS_2                         7                          15
  CLUS_3                        33                          33
  CLUS_4                        33                          42
  CLUS_5                        61                          48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       82     60     37
  DEL PEAK 14(6Q26) WILD-TYPE     85     73     26
D43V6, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        82                          85
  CLUS_2                        60                          73
  CLUS_3                        37                          26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(6Q26) MUTATED       71     51     44     62     27
  DEL PEAK 14(6Q26) WILD-TYPE     59     68     46     53     31
D43V7, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        71                          59
  CLUS_2                        51                          68
  CLUS_3                        44                          46
  CLUS_4                        62                          53
  CLUS_5                        27                          31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 14(6Q26) MUTATED       31     63     40     32     32     25     32
  DEL PEAK 14(6Q26) WILD-TYPE     47     47     57     16     21     24     45
D43V8, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        31                          47
  CLUS_2                        63                          47
  CLUS_3                        40                          57
  CLUS_4                        32                          16
  CLUS_5                        32                          21
  CLUS_6                        25                          24
  CLUS_7                        32                          45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       89    111     55
  DEL PEAK 14(6Q26) WILD-TYPE     97    110     48
D43V9, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        89                          97
  CLUS_2                       111                         110
  CLUS_3                        55                          48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(6Q26) MUTATED       33     20     88     57     39     18
  DEL PEAK 14(6Q26) WILD-TYPE     38     19     57     73     57     11
D43V10, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        33                          38
  CLUS_2                        20                          19
  CLUS_3                        88                          57
  CLUS_4                        57                          73
  CLUS_5                        39                          57
  CLUS_6                        18                          11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(6Q26) MUTATED       21     47     46     23     34     40
  DEL PEAK 14(6Q26) WILD-TYPE     38     43     49     20     36     37
D43V11, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        21                          38
  CLUS_2                        47                          43
  CLUS_3                        46                          49
  CLUS_4                        23                          20
  CLUS_5                        34                          36
  CLUS_6                        40                          37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       42    120     49
  DEL PEAK 14(6Q26) WILD-TYPE     62    118     43
D43V12, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        42                          62
  CLUS_2                       120                         118
  CLUS_3                        49                          43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 15(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED        6      7      7
  DEL PEAK 15(8P23.2) WILD-TYPE      9      3      0
D44V1, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                           6                             9
  CLUS_2                           7                             3
  CLUS_3                           7                             0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED        5      8      7
  DEL PEAK 15(8P23.2) WILD-TYPE      9      3      0
D44V2, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           8                             3
  CLUS_3                           7                             0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P23.2) MUTATED      115     77     27     35
  DEL PEAK 15(8P23.2) WILD-TYPE     57     61    105     39
D44V3, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                         115                            57
  CLUS_2                          77                            61
  CLUS_3                          27                           105
  CLUS_4                          35                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       78     95     48
  DEL PEAK 15(8P23.2) WILD-TYPE     78     75     81
D44V4, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          78                            78
  CLUS_2                          95                            75
  CLUS_3                          48                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED       52     11     25     46     45
  DEL PEAK 15(8P23.2) WILD-TYPE     39     11     41     29     64
D44V5, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          52                            39
  CLUS_2                          11                            11
  CLUS_3                          25                            41
  CLUS_4                          46                            29
  CLUS_5                          45                            64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       68     82     29
  DEL PEAK 15(8P23.2) WILD-TYPE     99     51     34
D44V6, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          68                            99
  CLUS_2                          82                            51
  CLUS_3                          29                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED       94     39     40     54     25
  DEL PEAK 15(8P23.2) WILD-TYPE     36     80     50     61     33
D44V7, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          94                            36
  CLUS_2                          39                            80
  CLUS_3                          40                            50
  CLUS_4                          54                            61
  CLUS_5                          25                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.2) MUTATED       34     70     64     11     20     24
  DEL PEAK 15(8P23.2) WILD-TYPE     44     40     33     37     33     25
                               vv
clus                            CLUS_7
  DEL PEAK 15(8P23.2) MUTATED       29
  DEL PEAK 15(8P23.2) WILD-TYPE     48
D44V8, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          34                            44
  CLUS_2                          70                            40
  CLUS_3                          64                            33
  CLUS_4                          11                            37
  CLUS_5                          20                            33
  CLUS_6                          24                            25
  CLUS_7                          29                            48
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       68    123     59
  DEL PEAK 15(8P23.2) WILD-TYPE    118     98     44
D44V9, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          68                           118
  CLUS_2                         123                            98
  CLUS_3                          59                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.2) MUTATED       27     17     92     49     54     11
  DEL PEAK 15(8P23.2) WILD-TYPE     44     22     53     81     42     18
D44V10, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          27                            44
  CLUS_2                          17                            22
  CLUS_3                          92                            53
  CLUS_4                          49                            81
  CLUS_5                          54                            42
  CLUS_6                          11                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.2) MUTATED       15     41     52     16     39     48
  DEL PEAK 15(8P23.2) WILD-TYPE     44     49     43     27     31     29
D44V11, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          15                            44
  CLUS_2                          41                            49
  CLUS_3                          52                            43
  CLUS_4                          16                            27
  CLUS_5                          39                            31
  CLUS_6                          48                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       36    128     47
  DEL PEAK 15(8P23.2) WILD-TYPE     68    110     45
D44V12, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          36                            68
  CLUS_2                         128                           110
  CLUS_3                          47                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 16(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED        3      2      3
  DEL PEAK 16(8P11.21) WILD-TYPE     12      8      4
D45V1, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            3                             12
  CLUS_2                            2                              8
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED        3      2      3
  DEL PEAK 16(8P11.21) WILD-TYPE     11      9      4
D45V2, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            2                              9
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P11.21) MUTATED       68     37     14      6
  DEL PEAK 16(8P11.21) WILD-TYPE    104    101    118     68
D45V3, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           68                            104
  CLUS_2                           37                            101
  CLUS_3                           14                            118
  CLUS_4                            6                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       34     49     28
  DEL PEAK 16(8P11.21) WILD-TYPE    122    121    101
D45V4, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           34                            122
  CLUS_2                           49                            121
  CLUS_3                           28                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P11.21) MUTATED       23      7     15     22     22
  DEL PEAK 16(8P11.21) WILD-TYPE     68     15     51     53     87
D45V5, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           23                             68
  CLUS_2                            7                             15
  CLUS_3                           15                             51
  CLUS_4                           22                             53
  CLUS_5                           22                             87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       36     37     16
  DEL PEAK 16(8P11.21) WILD-TYPE    131     96     47
D45V6, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           36                            131
  CLUS_2                           37                             96
  CLUS_3                           16                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P11.21) MUTATED       46     24     21     23     10
  DEL PEAK 16(8P11.21) WILD-TYPE     84     95     69     92     48
D45V7, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           46                             84
  CLUS_2                           24                             95
  CLUS_3                           21                             69
  CLUS_4                           23                             92
  CLUS_5                           10                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(8P11.21) MUTATED       21     34     25      5     12     13
  DEL PEAK 16(8P11.21) WILD-TYPE     57     76     72     43     41     36
                                vv
clus                             CLUS_7
  DEL PEAK 16(8P11.21) MUTATED       14
  DEL PEAK 16(8P11.21) WILD-TYPE     63
D45V8, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           21                             57
  CLUS_2                           34                             76
  CLUS_3                           25                             72
  CLUS_4                            5                             43
  CLUS_5                           12                             41
  CLUS_6                           13                             36
  CLUS_7                           14                             63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       39     53     30
  DEL PEAK 16(8P11.21) WILD-TYPE    147    168     73
D45V9, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           39                            147
  CLUS_2                           53                            168
  CLUS_3                           30                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(8P11.21) MUTATED       18     10     40     26     19      9
  DEL PEAK 16(8P11.21) WILD-TYPE     53     29    105    104     77     20
D45V10, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           18                             53
  CLUS_2                           10                             29
  CLUS_3                           40                            105
  CLUS_4                           26                            104
  CLUS_5                           19                             77
  CLUS_6                            9                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(8P11.21) MUTATED        9     23     25      8     23     19
  DEL PEAK 16(8P11.21) WILD-TYPE     50     67     70     35     47     58
D45V11, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            9                             50
  CLUS_2                           23                             67
  CLUS_3                           25                             70
  CLUS_4                            8                             35
  CLUS_5                           23                             47
  CLUS_6                           19                             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       18     62     27
  DEL PEAK 16(8P11.21) WILD-TYPE     86    176     65
D45V12, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           18                             86
  CLUS_2                           62                            176
  CLUS_3                           27                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 17(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED        9      6      5
  DEL PEAK 17(9P23) WILD-TYPE      6      4      2
D46V1, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         9                           6
  CLUS_2                         6                           4
  CLUS_3                         5                           2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED        9      6      5
  DEL PEAK 17(9P23) WILD-TYPE      5      5      2
D46V2, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         9                           5
  CLUS_2                         6                           5
  CLUS_3                         5                           2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P23) MUTATED      109     98     54     26
  DEL PEAK 17(9P23) WILD-TYPE     63     40     78     48
D46V3, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                       109                          63
  CLUS_2                        98                          40
  CLUS_3                        54                          78
  CLUS_4                        26                          48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       95     91     63
  DEL PEAK 17(9P23) WILD-TYPE     61     79     66
D46V4, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        95                          61
  CLUS_2                        91                          79
  CLUS_3                        63                          66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P23) MUTATED       51     12     38     47     52
  DEL PEAK 17(9P23) WILD-TYPE     40     10     28     28     57
D46V5, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        51                          40
  CLUS_2                        12                          10
  CLUS_3                        38                          28
  CLUS_4                        47                          28
  CLUS_5                        52                          57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       92     78     30
  DEL PEAK 17(9P23) WILD-TYPE     75     55     33
D46V6, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        92                          75
  CLUS_2                        78                          55
  CLUS_3                        30                          33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P23) MUTATED       66     62     63     62     32
  DEL PEAK 17(9P23) WILD-TYPE     64     57     27     53     26
D46V7, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        66                          64
  CLUS_2                        62                          57
  CLUS_3                        63                          27
  CLUS_4                        62                          53
  CLUS_5                        32                          26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 17(9P23) MUTATED       42     53     63     24     27     40     36
  DEL PEAK 17(9P23) WILD-TYPE     36     57     34     24     26      9     41
D46V8, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        42                          36
  CLUS_2                        53                          57
  CLUS_3                        63                          34
  CLUS_4                        24                          24
  CLUS_5                        27                          26
  CLUS_6                        40                           9
  CLUS_7                        36                          41
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       95    123     64
  DEL PEAK 17(9P23) WILD-TYPE     91     98     39
D46V9, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        95                          91
  CLUS_2                       123                          98
  CLUS_3                        64                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P23) MUTATED       34     24     76     65     63     20
  DEL PEAK 17(9P23) WILD-TYPE     37     15     69     65     33      9
D46V10, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        34                          37
  CLUS_2                        24                          15
  CLUS_3                        76                          69
  CLUS_4                        65                          65
  CLUS_5                        63                          33
  CLUS_6                        20                           9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P23) MUTATED       32     51     57     25     36     38
  DEL PEAK 17(9P23) WILD-TYPE     27     39     38     18     34     39
D46V11, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        32                          27
  CLUS_2                        51                          39
  CLUS_3                        57                          38
  CLUS_4                        25                          18
  CLUS_5                        36                          34
  CLUS_6                        38                          39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       48    141     50
  DEL PEAK 17(9P23) WILD-TYPE     56     97     42
D46V12, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        48                          56
  CLUS_2                       141                          97
  CLUS_3                        50                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 18(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED        9      7      5
  DEL PEAK 18(9P21.3) WILD-TYPE      6      3      2
D47V1, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           9                             6
  CLUS_2                           7                             3
  CLUS_3                           5                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED        9      7      5
  DEL PEAK 18(9P21.3) WILD-TYPE      5      4      2
D47V2, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           9                             5
  CLUS_2                           7                             4
  CLUS_3                           5                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9P21.3) MUTATED      112    103     54     25
  DEL PEAK 18(9P21.3) WILD-TYPE     60     35     78     49
D47V3, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                         112                            60
  CLUS_2                         103                            35
  CLUS_3                          54                            78
  CLUS_4                          25                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       96     93     63
  DEL PEAK 18(9P21.3) WILD-TYPE     60     77     66
D47V4, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          96                            60
  CLUS_2                          93                            77
  CLUS_3                          63                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9P21.3) MUTATED       56     11     36     48     55
  DEL PEAK 18(9P21.3) WILD-TYPE     35     11     30     27     54
D47V5, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          56                            35
  CLUS_2                          11                            11
  CLUS_3                          36                            30
  CLUS_4                          48                            27
  CLUS_5                          55                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       91     83     32
  DEL PEAK 18(9P21.3) WILD-TYPE     76     50     31
D47V6, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          91                            76
  CLUS_2                          83                            50
  CLUS_3                          32                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9P21.3) MUTATED       72     62     70     56     32
  DEL PEAK 18(9P21.3) WILD-TYPE     58     57     20     59     26
D47V7, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          72                            58
  CLUS_2                          62                            57
  CLUS_3                          70                            20
  CLUS_4                          56                            59
  CLUS_5                          32                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9P21.3) MUTATED       45     57     63     23     25     43
  DEL PEAK 18(9P21.3) WILD-TYPE     33     53     34     25     28      6
                               vv
clus                            CLUS_7
  DEL PEAK 18(9P21.3) MUTATED       36
  DEL PEAK 18(9P21.3) WILD-TYPE     41
D47V8, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          45                            33
  CLUS_2                          57                            53
  CLUS_3                          63                            34
  CLUS_4                          23                            25
  CLUS_5                          25                            28
  CLUS_6                          43                             6
  CLUS_7                          36                            41
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       99    124     67
  DEL PEAK 18(9P21.3) WILD-TYPE     87     97     36
D47V9, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          99                            87
  CLUS_2                         124                            97
  CLUS_3                          67                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9P21.3) MUTATED       33     22     78     68     69     20
  DEL PEAK 18(9P21.3) WILD-TYPE     38     17     67     62     27      9
D47V10, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          33                            38
  CLUS_2                          22                            17
  CLUS_3                          78                            67
  CLUS_4                          68                            62
  CLUS_5                          69                            27
  CLUS_6                          20                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9P21.3) MUTATED       31     49     62     25     35     40
  DEL PEAK 18(9P21.3) WILD-TYPE     28     41     33     18     35     37
D47V11, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          31                            28
  CLUS_2                          49                            41
  CLUS_3                          62                            33
  CLUS_4                          25                            18
  CLUS_5                          35                            35
  CLUS_6                          40                            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       47    142     53
  DEL PEAK 18(9P21.3) WILD-TYPE     57     96     39
D47V12, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          47                            57
  CLUS_2                         142                            96
  CLUS_3                          53                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 19(9Q21.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED        6      6      5
  DEL PEAK 19(9Q21.11) WILD-TYPE      9      4      2
D48V1, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                            6                              9
  CLUS_2                            6                              4
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED        6      6      5
  DEL PEAK 19(9Q21.11) WILD-TYPE      8      5      2
D48V2, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            6                              5
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9Q21.11) MUTATED       94     96     30     38
  DEL PEAK 19(9Q21.11) WILD-TYPE     78     42    102     36
D48V3, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           94                             78
  CLUS_2                           96                             42
  CLUS_3                           30                            102
  CLUS_4                           38                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       94     77     52
  DEL PEAK 19(9Q21.11) WILD-TYPE     62     93     77
D48V4, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           94                             62
  CLUS_2                           77                             93
  CLUS_3                           52                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q21.11) MUTATED       48     10     30     48     43
  DEL PEAK 19(9Q21.11) WILD-TYPE     43     12     36     27     66
D48V5, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           48                             43
  CLUS_2                           10                             12
  CLUS_3                           30                             36
  CLUS_4                           48                             27
  CLUS_5                           43                             66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       82     78     19
  DEL PEAK 19(9Q21.11) WILD-TYPE     85     55     44
D48V6, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           82                             85
  CLUS_2                           78                             55
  CLUS_3                           19                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q21.11) MUTATED       62     45     44     75     30
  DEL PEAK 19(9Q21.11) WILD-TYPE     68     74     46     40     28
D48V7, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           62                             68
  CLUS_2                           45                             74
  CLUS_3                           44                             46
  CLUS_4                           75                             40
  CLUS_5                           30                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q21.11) MUTATED       35     48     59     16     38     31
  DEL PEAK 19(9Q21.11) WILD-TYPE     43     62     38     32     15     18
                                vv
clus                             CLUS_7
  DEL PEAK 19(9Q21.11) MUTATED       29
  DEL PEAK 19(9Q21.11) WILD-TYPE     48
D48V8, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           35                             43
  CLUS_2                           48                             62
  CLUS_3                           59                             38
  CLUS_4                           16                             32
  CLUS_5                           38                             15
  CLUS_6                           31                             18
  CLUS_7                           29                             48
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       70    123     61
  DEL PEAK 19(9Q21.11) WILD-TYPE    116     98     42
D48V9, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           70                            116
  CLUS_2                          123                             98
  CLUS_3                           61                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q21.11) MUTATED       25     26     70     48     68     17
  DEL PEAK 19(9Q21.11) WILD-TYPE     46     13     75     82     28     12
D48V10, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           25                             46
  CLUS_2                           26                             13
  CLUS_3                           70                             75
  CLUS_4                           48                             82
  CLUS_5                           68                             28
  CLUS_6                           17                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q21.11) MUTATED       20     56     48     25     32     35
  DEL PEAK 19(9Q21.11) WILD-TYPE     39     34     47     18     38     42
D48V11, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           20                             39
  CLUS_2                           56                             34
  CLUS_3                           48                             47
  CLUS_4                           25                             18
  CLUS_5                           32                             38
  CLUS_6                           35                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       36    135     45
  DEL PEAK 19(9Q21.11) WILD-TYPE     68    103     47
D48V12, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           36                             68
  CLUS_2                          135                            103
  CLUS_3                           45                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 20(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED        4      2      2
  DEL PEAK 20(10P15.3) WILD-TYPE     11      8      5
D49V1, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                            4                             11
  CLUS_2                            2                              8
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED        3      3      2
  DEL PEAK 20(10P15.3) WILD-TYPE     11      8      5
D49V2, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            3                              8
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10P15.3) MUTATED       67     33     16     15
  DEL PEAK 20(10P15.3) WILD-TYPE    105    105    116     59
D49V3, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           67                            105
  CLUS_2                           33                            105
  CLUS_3                           16                            116
  CLUS_4                           15                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED       47     45     21
  DEL PEAK 20(10P15.3) WILD-TYPE    109    125    108
D49V4, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           47                            109
  CLUS_2                           45                            125
  CLUS_3                           21                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10P15.3) MUTATED       27      8     17     19     23
  DEL PEAK 20(10P15.3) WILD-TYPE     64     14     49     56     86
D49V5, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           27                             64
  CLUS_2                            8                             14
  CLUS_3                           17                             49
  CLUS_4                           19                             56
  CLUS_5                           23                             86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED       44     34     16
  DEL PEAK 20(10P15.3) WILD-TYPE    123     99     47
D49V6, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           44                            123
  CLUS_2                           34                             99
  CLUS_3                           16                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10P15.3) MUTATED       41     19     13     38     19
  DEL PEAK 20(10P15.3) WILD-TYPE     89    100     77     77     39
D49V7, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           41                             89
  CLUS_2                           19                            100
  CLUS_3                           13                             77
  CLUS_4                           38                             77
  CLUS_5                           19                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10P15.3) MUTATED       16     28     40      6     17      9
  DEL PEAK 20(10P15.3) WILD-TYPE     62     82     57     42     36     40
                                vv
clus                             CLUS_7
  DEL PEAK 20(10P15.3) MUTATED       14
  DEL PEAK 20(10P15.3) WILD-TYPE     63
D49V8, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           16                             62
  CLUS_2                           28                             82
  CLUS_3                           40                             57
  CLUS_4                            6                             42
  CLUS_5                           17                             36
  CLUS_6                            9                             40
  CLUS_7                           14                             63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED       34     59     37
  DEL PEAK 20(10P15.3) WILD-TYPE    152    162     66
D49V9, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           34                            152
  CLUS_2                           59                            162
  CLUS_3                           37                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10P15.3) MUTATED       10     12     29     29     35     15
  DEL PEAK 20(10P15.3) WILD-TYPE     61     27    116    101     61     14
D49V10, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           10                             61
  CLUS_2                           12                             27
  CLUS_3                           29                            116
  CLUS_4                           29                            101
  CLUS_5                           35                             61
  CLUS_6                           15                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10P15.3) MUTATED       10     33     21     17     13     18
  DEL PEAK 20(10P15.3) WILD-TYPE     49     57     74     26     57     59
D49V11, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           10                             49
  CLUS_2                           33                             57
  CLUS_3                           21                             74
  CLUS_4                           17                             26
  CLUS_5                           13                             57
  CLUS_6                           18                             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED       19     67     26
  DEL PEAK 20(10P15.3) WILD-TYPE     85    171     66
D49V12, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           19                             85
  CLUS_2                           67                            171
  CLUS_3                           26                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 21(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED        5      4      1
  DEL PEAK 21(10Q26.3) WILD-TYPE     10      6      6
D50V1, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                            5                             10
  CLUS_2                            4                              6
  CLUS_3                            1                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED        4      5      1
  DEL PEAK 21(10Q26.3) WILD-TYPE     10      6      6
D50V2, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              6
  CLUS_3                            1                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10Q26.3) MUTATED       78     40     12     18
  DEL PEAK 21(10Q26.3) WILD-TYPE     94     98    120     56
D50V3, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           78                             94
  CLUS_2                           40                             98
  CLUS_3                           12                            120
  CLUS_4                           18                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       52     50     25
  DEL PEAK 21(10Q26.3) WILD-TYPE    104    120    104
D50V4, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           52                            104
  CLUS_2                           50                            120
  CLUS_3                           25                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q26.3) MUTATED       35      7     15     26     22
  DEL PEAK 21(10Q26.3) WILD-TYPE     56     15     51     49     87
D50V5, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           35                             56
  CLUS_2                            7                             15
  CLUS_3                           15                             51
  CLUS_4                           26                             49
  CLUS_5                           22                             87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       45     43     17
  DEL PEAK 21(10Q26.3) WILD-TYPE    122     90     46
D50V6, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           45                            122
  CLUS_2                           43                             90
  CLUS_3                           17                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q26.3) MUTATED       56     20     15     38     17
  DEL PEAK 21(10Q26.3) WILD-TYPE     74     99     75     77     41
D50V7, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           56                             74
  CLUS_2                           20                             99
  CLUS_3                           15                             75
  CLUS_4                           38                             77
  CLUS_5                           17                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED       22     40     48      1     11      9
  DEL PEAK 21(10Q26.3) WILD-TYPE     56     70     49     47     42     40
                                vv
clus                             CLUS_7
  DEL PEAK 21(10Q26.3) MUTATED       15
  DEL PEAK 21(10Q26.3) WILD-TYPE     62
D50V8, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           22                             56
  CLUS_2                           40                             70
  CLUS_3                           48                             49
  CLUS_4                            1                             47
  CLUS_5                           11                             42
  CLUS_6                            9                             40
  CLUS_7                           15                             62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       39     70     36
  DEL PEAK 21(10Q26.3) WILD-TYPE    147    151     67
D50V9, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           39                            147
  CLUS_2                           70                            151
  CLUS_3                           36                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED        8      9     41     30     43     14
  DEL PEAK 21(10Q26.3) WILD-TYPE     63     30    104    100     53     15
D50V10, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                            8                             63
  CLUS_2                            9                             30
  CLUS_3                           41                            104
  CLUS_4                           30                            100
  CLUS_5                           43                             53
  CLUS_6                           14                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED        7     32     22     16     22     25
  DEL PEAK 21(10Q26.3) WILD-TYPE     52     58     73     27     48     52
D50V11, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                            7                             52
  CLUS_2                           32                             58
  CLUS_3                           22                             73
  CLUS_4                           16                             27
  CLUS_5                           22                             48
  CLUS_6                           25                             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       17     82     25
  DEL PEAK 21(10Q26.3) WILD-TYPE     87    156     67
D50V12, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           17                             87
  CLUS_2                           82                            156
  CLUS_3                           25                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 22(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED        1      2      4
  DEL PEAK 22(11P15.5) WILD-TYPE     14      8      3
D51V1, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            2                              8
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED        1      2      4
  DEL PEAK 22(11P15.5) WILD-TYPE     13      9      3
D51V2, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            2                              9
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11P15.5) MUTATED       60     54     10     19
  DEL PEAK 22(11P15.5) WILD-TYPE    112     84    122     55
D51V3, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           60                            112
  CLUS_2                           54                             84
  CLUS_3                           10                            122
  CLUS_4                           19                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       59     44     22
  DEL PEAK 22(11P15.5) WILD-TYPE     97    126    107
D51V4, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           59                             97
  CLUS_2                           44                            126
  CLUS_3                           22                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11P15.5) MUTATED       20      6     13     32     30
  DEL PEAK 22(11P15.5) WILD-TYPE     71     16     53     43     79
D51V5, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           20                             71
  CLUS_2                            6                             16
  CLUS_3                           13                             53
  CLUS_4                           32                             43
  CLUS_5                           30                             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       34     51     16
  DEL PEAK 22(11P15.5) WILD-TYPE    133     82     47
D51V6, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           34                            133
  CLUS_2                           51                             82
  CLUS_3                           16                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11P15.5) MUTATED       47     14     29     36     14
  DEL PEAK 22(11P15.5) WILD-TYPE     83    105     61     79     44
D51V7, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           47                             83
  CLUS_2                           14                            105
  CLUS_3                           29                             61
  CLUS_4                           36                             79
  CLUS_5                           14                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED        8     36     38      8     14     23
  DEL PEAK 22(11P15.5) WILD-TYPE     70     74     59     40     39     26
                                vv
clus                             CLUS_7
  DEL PEAK 22(11P15.5) MUTATED       13
  DEL PEAK 22(11P15.5) WILD-TYPE     64
D51V8, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                            8                             70
  CLUS_2                           36                             74
  CLUS_3                           38                             59
  CLUS_4                            8                             40
  CLUS_5                           14                             39
  CLUS_6                           23                             26
  CLUS_7                           13                             64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       37     80     23
  DEL PEAK 22(11P15.5) WILD-TYPE    149    141     80
D51V9, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           37                            149
  CLUS_2                           80                            141
  CLUS_3                           23                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED       13      8     58     25     35      1
  DEL PEAK 22(11P15.5) WILD-TYPE     58     31     87    105     61     28
D51V10, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           13                             58
  CLUS_2                            8                             31
  CLUS_3                           58                             87
  CLUS_4                           25                            105
  CLUS_5                           35                             61
  CLUS_6                            1                             28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED        8     40     32      4     17     20
  DEL PEAK 22(11P15.5) WILD-TYPE     51     50     63     39     53     57
D51V11, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                            8                             51
  CLUS_2                           40                             50
  CLUS_3                           32                             63
  CLUS_4                            4                             39
  CLUS_5                           17                             53
  CLUS_6                           20                             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       19     77     25
  DEL PEAK 22(11P15.5) WILD-TYPE     85    161     67
D51V12, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           19                             85
  CLUS_2                           77                            161
  CLUS_3                           25                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 23(11Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.1) MUTATED        3      2      2
  DEL PEAK 23(11Q23.1) WILD-TYPE     12      8      5
D52V1, multiclass
        clus
vv       DEL PEAK 23(11Q23.1) MUTATED DEL PEAK 23(11Q23.1) WILD-TYPE
  CLUS_1                            3                             12
  CLUS_2                            2                              8
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.1) MUTATED        3      2      2
  DEL PEAK 23(11Q23.1) WILD-TYPE     11      9      5
D52V2, multiclass
        clus
vv       DEL PEAK 23(11Q23.1) MUTATED DEL PEAK 23(11Q23.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            2                              9
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q23.1) MUTATED       28     48     14     30
  DEL PEAK 23(11Q23.1) WILD-TYPE    144     90    118     44
D52V3, multiclass
        clus
vv       DEL PEAK 23(11Q23.1) MUTATED DEL PEAK 23(11Q23.1) WILD-TYPE
  CLUS_1                           28                            144
  CLUS_2                           48                             90
  CLUS_3                           14                            118
  CLUS_4                           30                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.1) MUTATED       54     32     18
  DEL PEAK 23(11Q23.1) WILD-TYPE    102    138    111
D52V4, multiclass
        clus
vv       DEL PEAK 23(11Q23.1) MUTATED DEL PEAK 23(11Q23.1) WILD-TYPE
  CLUS_1                           54                            102
  CLUS_2                           32                            138
  CLUS_3                           18                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q23.1) MUTATED       13      3     14     26     26
  DEL PEAK 23(11Q23.1) WILD-TYPE     78     19     52     49     83
D52V5, multiclass
        clus
vv       DEL PEAK 23(11Q23.1) MUTATED DEL PEAK 23(11Q23.1) WILD-TYPE
  CLUS_1                           13                             78
  CLUS_2                            3                             19
  CLUS_3                           14                             52
  CLUS_4                           26                             49
  CLUS_5                           26                             83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.1) MUTATED       29     35     18
  DEL PEAK 23(11Q23.1) WILD-TYPE    138     98     45
D52V6, multiclass
        clus
vv       DEL PEAK 23(11Q23.1) MUTATED DEL PEAK 23(11Q23.1) WILD-TYPE
  CLUS_1                           29                            138
  CLUS_2                           35                             98
  CLUS_3                           18                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q23.1) MUTATED       26     13     25     43     11
  DEL PEAK 23(11Q23.1) WILD-TYPE    104    106     65     72     47
D52V7, multiclass
        clus
vv       DEL PEAK 23(11Q23.1) MUTATED DEL PEAK 23(11Q23.1) WILD-TYPE
  CLUS_1                           26                            104
  CLUS_2                           13                            106
  CLUS_3                           25                             65
  CLUS_4                           43                             72
  CLUS_5                           11                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q23.1) MUTATED       10     26     22     16     20     16
  DEL PEAK 23(11Q23.1) WILD-TYPE     68     84     75     32     33     33
                                vv
clus                             CLUS_7
  DEL PEAK 23(11Q23.1) MUTATED        8
  DEL PEAK 23(11Q23.1) WILD-TYPE     69
D52V8, multiclass
        clus
vv       DEL PEAK 23(11Q23.1) MUTATED DEL PEAK 23(11Q23.1) WILD-TYPE
  CLUS_1                           10                             68
  CLUS_2                           26                             84
  CLUS_3                           22                             75
  CLUS_4                           16                             32
  CLUS_5                           20                             33
  CLUS_6                           16                             33
  CLUS_7                            8                             69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.1) MUTATED       35     67     17
  DEL PEAK 23(11Q23.1) WILD-TYPE    151    154     86
D52V9, multiclass
        clus
vv       DEL PEAK 23(11Q23.1) MUTATED DEL PEAK 23(11Q23.1) WILD-TYPE
  CLUS_1                           35                            151
  CLUS_2                           67                            154
  CLUS_3                           17                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q23.1) MUTATED       14     14     42     24     22      3
  DEL PEAK 23(11Q23.1) WILD-TYPE     57     25    103    106     74     26
D52V10, multiclass
        clus
vv       DEL PEAK 23(11Q23.1) MUTATED DEL PEAK 23(11Q23.1) WILD-TYPE
  CLUS_1                           14                             57
  CLUS_2                           14                             25
  CLUS_3                           42                            103
  CLUS_4                           24                            106
  CLUS_5                           22                             74
  CLUS_6                            3                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q23.1) MUTATED        9     33     24      3     14     14
  DEL PEAK 23(11Q23.1) WILD-TYPE     50     57     71     40     56     63
D52V11, multiclass
        clus
vv       DEL PEAK 23(11Q23.1) MUTATED DEL PEAK 23(11Q23.1) WILD-TYPE
  CLUS_1                            9                             50
  CLUS_2                           33                             57
  CLUS_3                           24                             71
  CLUS_4                            3                             40
  CLUS_5                           14                             56
  CLUS_6                           14                             63
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.1) MUTATED       20     57     20
  DEL PEAK 23(11Q23.1) WILD-TYPE     84    181     72
D52V12, multiclass
        clus
vv       DEL PEAK 23(11Q23.1) MUTATED DEL PEAK 23(11Q23.1) WILD-TYPE
  CLUS_1                           20                             84
  CLUS_2                           57                            181
  CLUS_3                           20                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 24(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED        1      2      2
  DEL PEAK 24(11Q25) WILD-TYPE     14      8      5
D53V1, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                          1                           14
  CLUS_2                          2                            8
  CLUS_3                          2                            5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED        1      2      2
  DEL PEAK 24(11Q25) WILD-TYPE     13      9      5
D53V2, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          2                            9
  CLUS_3                          2                            5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11Q25) MUTATED       31     43     14     27
  DEL PEAK 24(11Q25) WILD-TYPE    141     95    118     47
D53V3, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         31                          141
  CLUS_2                         43                           95
  CLUS_3                         14                          118
  CLUS_4                         27                           47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED       51     35     17
  DEL PEAK 24(11Q25) WILD-TYPE    105    135    112
D53V4, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         51                          105
  CLUS_2                         35                          135
  CLUS_3                         17                          112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11Q25) MUTATED       11      3     13     25     27
  DEL PEAK 24(11Q25) WILD-TYPE     80     19     53     50     82
D53V5, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         11                           80
  CLUS_2                          3                           19
  CLUS_3                         13                           53
  CLUS_4                         25                           50
  CLUS_5                         27                           82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED       27     35     17
  DEL PEAK 24(11Q25) WILD-TYPE    140     98     46
D53V6, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         27                          140
  CLUS_2                         35                           98
  CLUS_3                         17                           46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11Q25) MUTATED       25     12     26     39     11
  DEL PEAK 24(11Q25) WILD-TYPE    105    107     64     76     47
D53V7, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         25                          105
  CLUS_2                         12                          107
  CLUS_3                         26                           64
  CLUS_4                         39                           76
  CLUS_5                         11                           47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 24(11Q25) MUTATED       11     25     20     14     19     16      8
  DEL PEAK 24(11Q25) WILD-TYPE     67     85     77     34     34     33     69
D53V8, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         11                           67
  CLUS_2                         25                           85
  CLUS_3                         20                           77
  CLUS_4                         14                           34
  CLUS_5                         19                           34
  CLUS_6                         16                           33
  CLUS_7                          8                           69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED       34     61     19
  DEL PEAK 24(11Q25) WILD-TYPE    152    160     84
D53V9, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         34                          152
  CLUS_2                         61                          160
  CLUS_3                         19                           84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q25) MUTATED       14     12     39     26     20      3
  DEL PEAK 24(11Q25) WILD-TYPE     57     27    106    104     76     26
D53V10, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         14                           57
  CLUS_2                         12                           27
  CLUS_3                         39                          106
  CLUS_4                         26                          104
  CLUS_5                         20                           76
  CLUS_6                          3                           26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q25) MUTATED        9     30     29      2     14     14
  DEL PEAK 24(11Q25) WILD-TYPE     50     60     66     41     56     63
D53V11, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                          9                           50
  CLUS_2                         30                           60
  CLUS_3                         29                           66
  CLUS_4                          2                           41
  CLUS_5                         14                           56
  CLUS_6                         14                           63
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED       21     55     22
  DEL PEAK 24(11Q25) WILD-TYPE     83    183     70
D53V12, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         21                           83
  CLUS_2                         55                          183
  CLUS_3                         22                           70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 25(12P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED        6      4      2
  DEL PEAK 25(12P13.2) WILD-TYPE      9      6      5
D54V1, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                            6                              9
  CLUS_2                            4                              6
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED        6      4      2
  DEL PEAK 25(12P13.2) WILD-TYPE      8      7      5
D54V2, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            4                              7
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12P13.2) MUTATED       75     17     27     21
  DEL PEAK 25(12P13.2) WILD-TYPE     97    121    105     53
D54V3, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           75                             97
  CLUS_2                           17                            121
  CLUS_3                           27                            105
  CLUS_4                           21                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED       40     56     26
  DEL PEAK 25(12P13.2) WILD-TYPE    116    114    103
D54V4, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           40                            116
  CLUS_2                           56                            114
  CLUS_3                           26                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(12P13.2) MUTATED       31     11     16     17     20
  DEL PEAK 25(12P13.2) WILD-TYPE     60     11     50     58     89
D54V5, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           31                             60
  CLUS_2                           11                             11
  CLUS_3                           16                             50
  CLUS_4                           17                             58
  CLUS_5                           20                             89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED       51     30     14
  DEL PEAK 25(12P13.2) WILD-TYPE    116    103     49
D54V6, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           51                            116
  CLUS_2                           30                            103
  CLUS_3                           14                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(12P13.2) MUTATED       48     37     11     25     18
  DEL PEAK 25(12P13.2) WILD-TYPE     82     82     79     90     40
D54V7, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           48                             82
  CLUS_2                           37                             82
  CLUS_3                           11                             79
  CLUS_4                           25                             90
  CLUS_5                           18                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12P13.2) MUTATED       23     36     35     11      8      5
  DEL PEAK 25(12P13.2) WILD-TYPE     55     74     62     37     45     44
                                vv
clus                             CLUS_7
  DEL PEAK 25(12P13.2) MUTATED       21
  DEL PEAK 25(12P13.2) WILD-TYPE     56
D54V8, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           23                             55
  CLUS_2                           36                             74
  CLUS_3                           35                             62
  CLUS_4                           11                             37
  CLUS_5                            8                             45
  CLUS_6                            5                             44
  CLUS_7                           21                             56
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED       49     60     28
  DEL PEAK 25(12P13.2) WILD-TYPE    137    161     75
D54V9, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           49                            137
  CLUS_2                           60                            161
  CLUS_3                           28                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12P13.2) MUTATED       18      9     41     36     27      6
  DEL PEAK 25(12P13.2) WILD-TYPE     53     30    104     94     69     23
D54V10, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           18                             53
  CLUS_2                            9                             30
  CLUS_3                           41                            104
  CLUS_4                           36                             94
  CLUS_5                           27                             69
  CLUS_6                            6                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12P13.2) MUTATED       18     17     25     11     20     25
  DEL PEAK 25(12P13.2) WILD-TYPE     41     73     70     32     50     52
D54V11, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           18                             41
  CLUS_2                           17                             73
  CLUS_3                           25                             70
  CLUS_4                           11                             32
  CLUS_5                           20                             50
  CLUS_6                           25                             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED       21     64     31
  DEL PEAK 25(12P13.2) WILD-TYPE     83    174     61
D54V12, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           21                             83
  CLUS_2                           64                            174
  CLUS_3                           31                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 26(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED        4      2      1
  DEL PEAK 26(12Q12) WILD-TYPE     11      8      6
D55V1, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                          4                           11
  CLUS_2                          2                            8
  CLUS_3                          1                            6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED        4      2      1
  DEL PEAK 26(12Q12) WILD-TYPE     10      9      6
D55V2, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                          4                           10
  CLUS_2                          2                            9
  CLUS_3                          1                            6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(12Q12) MUTATED       60      9     19     11
  DEL PEAK 26(12Q12) WILD-TYPE    112    129    113     63
D55V3, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         60                          112
  CLUS_2                          9                          129
  CLUS_3                         19                          113
  CLUS_4                         11                           63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED       22     47     20
  DEL PEAK 26(12Q12) WILD-TYPE    134    123    109
D55V4, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         22                          134
  CLUS_2                         47                          123
  CLUS_3                         20                          109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12Q12) MUTATED       28      3     18      7     14
  DEL PEAK 26(12Q12) WILD-TYPE     63     19     48     68     95
D55V5, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         28                           63
  CLUS_2                          3                           19
  CLUS_3                         18                           48
  CLUS_4                          7                           68
  CLUS_5                         14                           95
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED       37     23     10
  DEL PEAK 26(12Q12) WILD-TYPE    130    110     53
D55V6, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         37                          130
  CLUS_2                         23                          110
  CLUS_3                         10                           53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12Q12) MUTATED       34     29     11     11     13
  DEL PEAK 26(12Q12) WILD-TYPE     96     90     79    104     45
D55V7, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         34                           96
  CLUS_2                         29                           90
  CLUS_3                         11                           79
  CLUS_4                         11                          104
  CLUS_5                         13                           45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 26(12Q12) MUTATED       16     26     20     10      2      7     17
  DEL PEAK 26(12Q12) WILD-TYPE     62     84     77     38     51     42     60
D55V8, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         16                           62
  CLUS_2                         26                           84
  CLUS_3                         20                           77
  CLUS_4                         10                           38
  CLUS_5                          2                           51
  CLUS_6                          7                           42
  CLUS_7                         17                           60
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED       40     32     25
  DEL PEAK 26(12Q12) WILD-TYPE    146    189     78
D55V9, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         40                          146
  CLUS_2                         32                          189
  CLUS_3                         25                           78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12Q12) MUTATED       15      1     32     30     13      6
  DEL PEAK 26(12Q12) WILD-TYPE     56     38    113    100     83     23
D55V10, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         15                           56
  CLUS_2                          1                           38
  CLUS_3                         32                          113
  CLUS_4                         30                          100
  CLUS_5                         13                           83
  CLUS_6                          6                           23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12Q12) MUTATED       14      8     18     12     14     19
  DEL PEAK 26(12Q12) WILD-TYPE     45     82     77     31     56     58
D55V11, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         14                           45
  CLUS_2                          8                           82
  CLUS_3                         18                           77
  CLUS_4                         12                           31
  CLUS_5                         14                           56
  CLUS_6                         19                           58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED       18     40     27
  DEL PEAK 26(12Q12) WILD-TYPE     86    198     65
D55V12, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         18                           86
  CLUS_2                         40                          198
  CLUS_3                         27                           65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 27(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED        5      0      1
  DEL PEAK 27(12Q24.33) WILD-TYPE     10     10      6
D56V1, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                             5                              10
  CLUS_2                             0                              10
  CLUS_3                             1                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED        5      0      1
  DEL PEAK 27(12Q24.33) WILD-TYPE      9     11      6
D56V2, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                             5                               9
  CLUS_2                             0                              11
  CLUS_3                             1                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q24.33) MUTATED       80     10     29     14
  DEL PEAK 27(12Q24.33) WILD-TYPE     92    128    103     60
D56V3, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            80                              92
  CLUS_2                            10                             128
  CLUS_3                            29                             103
  CLUS_4                            14                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED       37     51     32
  DEL PEAK 27(12Q24.33) WILD-TYPE    119    119     97
D56V4, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            37                             119
  CLUS_2                            51                             119
  CLUS_3                            32                              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q24.33) MUTATED       31      8     20     10     20
  DEL PEAK 27(12Q24.33) WILD-TYPE     60     14     46     65     89
D56V5, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            31                              60
  CLUS_2                             8                              14
  CLUS_3                            20                              46
  CLUS_4                            10                              65
  CLUS_5                            20                              89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED       49     27     13
  DEL PEAK 27(12Q24.33) WILD-TYPE    118    106     50
D56V6, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            49                             118
  CLUS_2                            27                             106
  CLUS_3                            13                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q24.33) MUTATED       46     37     11     18     20
  DEL PEAK 27(12Q24.33) WILD-TYPE     84     82     79     97     38
D56V7, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            46                              84
  CLUS_2                            37                              82
  CLUS_3                            11                              79
  CLUS_4                            18                              97
  CLUS_5                            20                              38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q24.33) MUTATED       21     31     32     16      2      6
  DEL PEAK 27(12Q24.33) WILD-TYPE     57     79     65     32     51     43
                                 vv
clus                              CLUS_7
  DEL PEAK 27(12Q24.33) MUTATED       24
  DEL PEAK 27(12Q24.33) WILD-TYPE     53
D56V8, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            21                              57
  CLUS_2                            31                              79
  CLUS_3                            32                              65
  CLUS_4                            16                              32
  CLUS_5                             2                              51
  CLUS_6                             6                              43
  CLUS_7                            24                              53
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED       52     49     30
  DEL PEAK 27(12Q24.33) WILD-TYPE    134    172     73
D56V9, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            52                             134
  CLUS_2                            49                             172
  CLUS_3                            30                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q24.33) MUTATED       18      6     39     44     16      8
  DEL PEAK 27(12Q24.33) WILD-TYPE     53     33    106     86     80     21
D56V10, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            18                              53
  CLUS_2                             6                              33
  CLUS_3                            39                             106
  CLUS_4                            44                              86
  CLUS_5                            16                              80
  CLUS_6                             8                              21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q24.33) MUTATED       20     15     22     12     21     27
  DEL PEAK 27(12Q24.33) WILD-TYPE     39     75     73     31     49     50
D56V11, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            20                              39
  CLUS_2                            15                              75
  CLUS_3                            22                              73
  CLUS_4                            12                              31
  CLUS_5                            21                              49
  CLUS_6                            27                              50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED       29     61     27
  DEL PEAK 27(12Q24.33) WILD-TYPE     75    177     65
D56V12, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            29                              75
  CLUS_2                            61                             177
  CLUS_3                            27                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 28(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED        4      6      5
  DEL PEAK 28(13Q12.11) WILD-TYPE     11      4      2
D57V1, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                             4                              11
  CLUS_2                             6                               4
  CLUS_3                             5                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED        3      7      5
  DEL PEAK 28(13Q12.11) WILD-TYPE     11      4      2
D57V2, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             7                               4
  CLUS_3                             5                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(13Q12.11) MUTATED      125     97     31     40
  DEL PEAK 28(13Q12.11) WILD-TYPE     47     41    101     34
D57V3, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                           125                              47
  CLUS_2                            97                              41
  CLUS_3                            31                             101
  CLUS_4                            40                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED       93    107     61
  DEL PEAK 28(13Q12.11) WILD-TYPE     63     63     68
D57V4, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            93                              63
  CLUS_2                           107                              63
  CLUS_3                            61                              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(13Q12.11) MUTATED       64     12     34     53     48
  DEL PEAK 28(13Q12.11) WILD-TYPE     27     10     32     22     61
D57V5, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            64                              27
  CLUS_2                            12                              10
  CLUS_3                            34                              32
  CLUS_4                            53                              22
  CLUS_5                            48                              61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED       94     87     30
  DEL PEAK 28(13Q12.11) WILD-TYPE     73     46     33
D57V6, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            94                              73
  CLUS_2                            87                              46
  CLUS_3                            30                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(13Q12.11) MUTATED       99     43     40     79     29
  DEL PEAK 28(13Q12.11) WILD-TYPE     31     76     50     36     29
D57V7, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            99                              31
  CLUS_2                            43                              76
  CLUS_3                            40                              50
  CLUS_4                            79                              36
  CLUS_5                            29                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(13Q12.11) MUTATED       38     79     66     15     39     22
  DEL PEAK 28(13Q12.11) WILD-TYPE     40     31     31     33     14     27
                                 vv
clus                              CLUS_7
  DEL PEAK 28(13Q12.11) MUTATED       31
  DEL PEAK 28(13Q12.11) WILD-TYPE     46
D57V8, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            38                              40
  CLUS_2                            79                              31
  CLUS_3                            66                              31
  CLUS_4                            15                              33
  CLUS_5                            39                              14
  CLUS_6                            22                              27
  CLUS_7                            31                              46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED       87    140     64
  DEL PEAK 28(13Q12.11) WILD-TYPE     99     81     39
D57V9, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            87                              99
  CLUS_2                           140                              81
  CLUS_3                            64                              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(13Q12.11) MUTATED       36     26     93     57     65     14
  DEL PEAK 28(13Q12.11) WILD-TYPE     35     13     52     73     31     15
D57V10, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            36                              35
  CLUS_2                            26                              13
  CLUS_3                            93                              52
  CLUS_4                            57                              73
  CLUS_5                            65                              31
  CLUS_6                            14                              15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(13Q12.11) MUTATED       21     62     54     24     40     51
  DEL PEAK 28(13Q12.11) WILD-TYPE     38     28     41     19     30     26
D57V11, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            21                              38
  CLUS_2                            62                              28
  CLUS_3                            54                              41
  CLUS_4                            24                              19
  CLUS_5                            40                              30
  CLUS_6                            51                              26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED       48    152     52
  DEL PEAK 28(13Q12.11) WILD-TYPE     56     86     40
D57V12, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            48                              56
  CLUS_2                           152                              86
  CLUS_3                            52                              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 29(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q34) MUTATED        3      4      5
  DEL PEAK 29(13Q34) WILD-TYPE     12      6      2
D58V1, multiclass
        clus
vv       DEL PEAK 29(13Q34) MUTATED DEL PEAK 29(13Q34) WILD-TYPE
  CLUS_1                          3                           12
  CLUS_2                          4                            6
  CLUS_3                          5                            2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q34) MUTATED        3      4      5
  DEL PEAK 29(13Q34) WILD-TYPE     11      7      2
D58V2, multiclass
        clus
vv       DEL PEAK 29(13Q34) MUTATED DEL PEAK 29(13Q34) WILD-TYPE
  CLUS_1                          3                           11
  CLUS_2                          4                            7
  CLUS_3                          5                            2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q34) MUTATED       96     82     25     38
  DEL PEAK 29(13Q34) WILD-TYPE     76     56    107     36
D58V3, multiclass
        clus
vv       DEL PEAK 29(13Q34) MUTATED DEL PEAK 29(13Q34) WILD-TYPE
  CLUS_1                         96                           76
  CLUS_2                         82                           56
  CLUS_3                         25                          107
  CLUS_4                         38                           36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q34) MUTATED       74     88     50
  DEL PEAK 29(13Q34) WILD-TYPE     82     82     79
D58V4, multiclass
        clus
vv       DEL PEAK 29(13Q34) MUTATED DEL PEAK 29(13Q34) WILD-TYPE
  CLUS_1                         74                           82
  CLUS_2                         88                           82
  CLUS_3                         50                           79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q34) MUTATED       52      8     26     45     40
  DEL PEAK 29(13Q34) WILD-TYPE     39     14     40     30     69
D58V5, multiclass
        clus
vv       DEL PEAK 29(13Q34) MUTATED DEL PEAK 29(13Q34) WILD-TYPE
  CLUS_1                         52                           39
  CLUS_2                          8                           14
  CLUS_3                         26                           40
  CLUS_4                         45                           30
  CLUS_5                         40                           69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q34) MUTATED       76     69     26
  DEL PEAK 29(13Q34) WILD-TYPE     91     64     37
D58V6, multiclass
        clus
vv       DEL PEAK 29(13Q34) MUTATED DEL PEAK 29(13Q34) WILD-TYPE
  CLUS_1                         76                           91
  CLUS_2                         69                           64
  CLUS_3                         26                           37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q34) MUTATED       76     38     35     66     23
  DEL PEAK 29(13Q34) WILD-TYPE     54     81     55     49     35
D58V7, multiclass
        clus
vv       DEL PEAK 29(13Q34) MUTATED DEL PEAK 29(13Q34) WILD-TYPE
  CLUS_1                         76                           54
  CLUS_2                         38                           81
  CLUS_3                         35                           55
  CLUS_4                         66                           49
  CLUS_5                         23                           35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 29(13Q34) MUTATED       31     69     48     14     34     19     23
  DEL PEAK 29(13Q34) WILD-TYPE     47     41     49     34     19     30     54
D58V8, multiclass
        clus
vv       DEL PEAK 29(13Q34) MUTATED DEL PEAK 29(13Q34) WILD-TYPE
  CLUS_1                         31                           47
  CLUS_2                         69                           41
  CLUS_3                         48                           49
  CLUS_4                         14                           34
  CLUS_5                         34                           19
  CLUS_6                         19                           30
  CLUS_7                         23                           54
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q34) MUTATED       70    112     55
  DEL PEAK 29(13Q34) WILD-TYPE    116    109     48
D58V9, multiclass
        clus
vv       DEL PEAK 29(13Q34) MUTATED DEL PEAK 29(13Q34) WILD-TYPE
  CLUS_1                         70                          116
  CLUS_2                        112                          109
  CLUS_3                         55                           48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q34) MUTATED       30     26     78     47     45     11
  DEL PEAK 29(13Q34) WILD-TYPE     41     13     67     83     51     18
D58V10, multiclass
        clus
vv       DEL PEAK 29(13Q34) MUTATED DEL PEAK 29(13Q34) WILD-TYPE
  CLUS_1                         30                           41
  CLUS_2                         26                           13
  CLUS_3                         78                           67
  CLUS_4                         47                           83
  CLUS_5                         45                           51
  CLUS_6                         11                           18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q34) MUTATED       18     45     44     22     34     41
  DEL PEAK 29(13Q34) WILD-TYPE     41     45     51     21     36     36
D58V11, multiclass
        clus
vv       DEL PEAK 29(13Q34) MUTATED DEL PEAK 29(13Q34) WILD-TYPE
  CLUS_1                         18                           41
  CLUS_2                         45                           45
  CLUS_3                         44                           51
  CLUS_4                         22                           21
  CLUS_5                         34                           36
  CLUS_6                         41                           36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q34) MUTATED       39    121     44
  DEL PEAK 29(13Q34) WILD-TYPE     65    117     48
D58V12, multiclass
        clus
vv       DEL PEAK 29(13Q34) MUTATED DEL PEAK 29(13Q34) WILD-TYPE
  CLUS_1                         39                           65
  CLUS_2                        121                          117
  CLUS_3                         44                           48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 30(14Q32.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q32.33) MUTATED        3      3      4
  DEL PEAK 30(14Q32.33) WILD-TYPE     12      7      3
D59V1, multiclass
        clus
vv       DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  CLUS_1                             3                              12
  CLUS_2                             3                               7
  CLUS_3                             4                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q32.33) MUTATED        3      3      4
  DEL PEAK 30(14Q32.33) WILD-TYPE     11      8      3
D59V2, multiclass
        clus
vv       DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             3                               8
  CLUS_3                             4                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q32.33) MUTATED       54     58     20     18
  DEL PEAK 30(14Q32.33) WILD-TYPE    118     80    112     56
D59V3, multiclass
        clus
vv       DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  CLUS_1                            54                             118
  CLUS_2                            58                              80
  CLUS_3                            20                             112
  CLUS_4                            18                              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q32.33) MUTATED       57     49     25
  DEL PEAK 30(14Q32.33) WILD-TYPE     99    121    104
D59V4, multiclass
        clus
vv       DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  CLUS_1                            57                              99
  CLUS_2                            49                             121
  CLUS_3                            25                             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(14Q32.33) MUTATED       30      4     21     26     27
  DEL PEAK 30(14Q32.33) WILD-TYPE     61     18     45     49     82
D59V5, multiclass
        clus
vv       DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  CLUS_1                            30                              61
  CLUS_2                             4                              18
  CLUS_3                            21                              45
  CLUS_4                            26                              49
  CLUS_5                            27                              82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q32.33) MUTATED       44     46     18
  DEL PEAK 30(14Q32.33) WILD-TYPE    123     87     45
D59V6, multiclass
        clus
vv       DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  CLUS_1                            44                             123
  CLUS_2                            46                              87
  CLUS_3                            18                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(14Q32.33) MUTATED       38     31     31     34     15
  DEL PEAK 30(14Q32.33) WILD-TYPE     92     88     59     81     43
D59V7, multiclass
        clus
vv       DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  CLUS_1                            38                              92
  CLUS_2                            31                              88
  CLUS_3                            31                              59
  CLUS_4                            34                              81
  CLUS_5                            15                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q32.33) MUTATED       18     31     30     12     16     25
  DEL PEAK 30(14Q32.33) WILD-TYPE     60     79     67     36     37     24
                                 vv
clus                              CLUS_7
  DEL PEAK 30(14Q32.33) MUTATED       17
  DEL PEAK 30(14Q32.33) WILD-TYPE     60
D59V8, multiclass
        clus
vv       DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  CLUS_1                            18                              60
  CLUS_2                            31                              79
  CLUS_3                            30                              67
  CLUS_4                            12                              36
  CLUS_5                            16                              37
  CLUS_6                            25                              24
  CLUS_7                            17                              60
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q32.33) MUTATED       48     79     23
  DEL PEAK 30(14Q32.33) WILD-TYPE    138    142     80
D59V9, multiclass
        clus
vv       DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  CLUS_1                            48                             138
  CLUS_2                            79                             142
  CLUS_3                            23                              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q32.33) MUTATED       21     13     46     33     34      3
  DEL PEAK 30(14Q32.33) WILD-TYPE     50     26     99     97     62     26
D59V10, multiclass
        clus
vv       DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  CLUS_1                            21                              50
  CLUS_2                            13                              26
  CLUS_3                            46                              99
  CLUS_4                            33                              97
  CLUS_5                            34                              62
  CLUS_6                             3                              26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q32.33) MUTATED       15     30     30     10     22     21
  DEL PEAK 30(14Q32.33) WILD-TYPE     44     60     65     33     48     56
D59V11, multiclass
        clus
vv       DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  CLUS_1                            15                              44
  CLUS_2                            30                              60
  CLUS_3                            30                              65
  CLUS_4                            10                              33
  CLUS_5                            22                              48
  CLUS_6                            21                              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q32.33) MUTATED       24     77     27
  DEL PEAK 30(14Q32.33) WILD-TYPE     80    161     65
D59V12, multiclass
        clus
vv       DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  CLUS_1                            24                              80
  CLUS_2                            77                             161
  CLUS_3                            27                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 31(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q11.2) MUTATED        7      6      5
  DEL PEAK 31(15Q11.2) WILD-TYPE      8      4      2
D60V1, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                            7                              8
  CLUS_2                            6                              4
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q11.2) MUTATED        6      7      5
  DEL PEAK 31(15Q11.2) WILD-TYPE      8      4      2
D60V2, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            7                              4
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(15Q11.2) MUTATED      124     65     25     49
  DEL PEAK 31(15Q11.2) WILD-TYPE     48     73    107     25
D60V3, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                          124                             48
  CLUS_2                           65                             73
  CLUS_3                           25                            107
  CLUS_4                           49                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q11.2) MUTATED       81    102     45
  DEL PEAK 31(15Q11.2) WILD-TYPE     75     68     84
D60V4, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           81                             75
  CLUS_2                          102                             68
  CLUS_3                           45                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q11.2) MUTATED       59     11     31     41     45
  DEL PEAK 31(15Q11.2) WILD-TYPE     32     11     35     34     64
D60V5, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           59                             32
  CLUS_2                           11                             11
  CLUS_3                           31                             35
  CLUS_4                           41                             34
  CLUS_5                           45                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q11.2) MUTATED       83     74     30
  DEL PEAK 31(15Q11.2) WILD-TYPE     84     59     33
D60V6, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           83                             84
  CLUS_2                           74                             59
  CLUS_3                           30                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q11.2) MUTATED       96     40     21     74     28
  DEL PEAK 31(15Q11.2) WILD-TYPE     34     79     69     41     30
D60V7, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           96                             34
  CLUS_2                           40                             79
  CLUS_3                           21                             69
  CLUS_4                           74                             41
  CLUS_5                           28                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q11.2) MUTATED       39     73     62     12     36      9
  DEL PEAK 31(15Q11.2) WILD-TYPE     39     37     35     36     17     40
                                vv
clus                             CLUS_7
  DEL PEAK 31(15Q11.2) MUTATED       28
  DEL PEAK 31(15Q11.2) WILD-TYPE     49
D60V8, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           39                             39
  CLUS_2                           73                             37
  CLUS_3                           62                             35
  CLUS_4                           12                             36
  CLUS_5                           36                             17
  CLUS_6                            9                             40
  CLUS_7                           28                             49
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q11.2) MUTATED       71    130     59
  DEL PEAK 31(15Q11.2) WILD-TYPE    115     91     44
D60V9, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           71                            115
  CLUS_2                          130                             91
  CLUS_3                           59                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q11.2) MUTATED       29     29     84     51     53     14
  DEL PEAK 31(15Q11.2) WILD-TYPE     42     10     61     79     43     15
D60V10, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           29                             42
  CLUS_2                           29                             10
  CLUS_3                           84                             61
  CLUS_4                           51                             79
  CLUS_5                           53                             43
  CLUS_6                           14                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q11.2) MUTATED       16     51     53     20     40     41
  DEL PEAK 31(15Q11.2) WILD-TYPE     43     39     42     23     30     36
D60V11, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           16                             43
  CLUS_2                           51                             39
  CLUS_3                           53                             42
  CLUS_4                           20                             23
  CLUS_5                           40                             30
  CLUS_6                           41                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q11.2) MUTATED       36    130     55
  DEL PEAK 31(15Q11.2) WILD-TYPE     68    108     37
D60V12, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           36                             68
  CLUS_2                          130                            108
  CLUS_3                           55                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 32(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED        7      7      6
  DEL PEAK 32(15Q15.1) WILD-TYPE      8      3      1
D61V1, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            7                              8
  CLUS_2                            7                              3
  CLUS_3                            6                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED        6      8      6
  DEL PEAK 32(15Q15.1) WILD-TYPE      8      3      1
D61V2, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            8                              3
  CLUS_3                            6                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q15.1) MUTATED      125     73     25     52
  DEL PEAK 32(15Q15.1) WILD-TYPE     47     65    107     22
D61V3, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                          125                             47
  CLUS_2                           73                             65
  CLUS_3                           25                            107
  CLUS_4                           52                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       82    108     45
  DEL PEAK 32(15Q15.1) WILD-TYPE     74     62     84
D61V4, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           82                             74
  CLUS_2                          108                             62
  CLUS_3                           45                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q15.1) MUTATED       62     11     31     41     52
  DEL PEAK 32(15Q15.1) WILD-TYPE     29     11     35     34     57
D61V5, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           62                             29
  CLUS_2                           11                             11
  CLUS_3                           31                             35
  CLUS_4                           41                             34
  CLUS_5                           52                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       86     79     32
  DEL PEAK 32(15Q15.1) WILD-TYPE     81     54     31
D61V6, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           86                             81
  CLUS_2                           79                             54
  CLUS_3                           32                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q15.1) MUTATED      101     40     25     74     31
  DEL PEAK 32(15Q15.1) WILD-TYPE     29     79     65     41     27
D61V7, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                          101                             29
  CLUS_2                           40                             79
  CLUS_3                           25                             65
  CLUS_4                           74                             41
  CLUS_5                           31                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q15.1) MUTATED       39     76     65     12     37     11
  DEL PEAK 32(15Q15.1) WILD-TYPE     39     34     32     36     16     38
                                vv
clus                             CLUS_7
  DEL PEAK 32(15Q15.1) MUTATED       31
  DEL PEAK 32(15Q15.1) WILD-TYPE     46
D61V8, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           39                             39
  CLUS_2                           76                             34
  CLUS_3                           65                             32
  CLUS_4                           12                             36
  CLUS_5                           37                             16
  CLUS_6                           11                             38
  CLUS_7                           31                             46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       73    137     62
  DEL PEAK 32(15Q15.1) WILD-TYPE    113     84     41
D61V9, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           73                            113
  CLUS_2                          137                             84
  CLUS_3                           62                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q15.1) MUTATED       29     29     89     52     58     15
  DEL PEAK 32(15Q15.1) WILD-TYPE     42     10     56     78     38     14
D61V10, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           29                             42
  CLUS_2                           29                             10
  CLUS_3                           89                             56
  CLUS_4                           52                             78
  CLUS_5                           58                             38
  CLUS_6                           15                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q15.1) MUTATED       16     52     54     23     41     41
  DEL PEAK 32(15Q15.1) WILD-TYPE     43     38     41     20     29     36
D61V11, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           16                             43
  CLUS_2                           52                             38
  CLUS_3                           54                             41
  CLUS_4                           23                             20
  CLUS_5                           41                             29
  CLUS_6                           41                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       37    137     53
  DEL PEAK 32(15Q15.1) WILD-TYPE     67    101     39
D61V12, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           37                             67
  CLUS_2                          137                            101
  CLUS_3                           53                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 33(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(16P13.3) MUTATED        0      1      2
  DEL PEAK 33(16P13.3) WILD-TYPE     15      9      5
D62V1, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                            1                              9
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(16P13.3) MUTATED        0      1      2
  DEL PEAK 33(16P13.3) WILD-TYPE     14     10      5
D62V2, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            1                             10
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(16P13.3) MUTATED       23     46     10     32
  DEL PEAK 33(16P13.3) WILD-TYPE    149     92    122     42
D62V3, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                           23                            149
  CLUS_2                           46                             92
  CLUS_3                           10                            122
  CLUS_4                           32                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(16P13.3) MUTATED       45     42     12
  DEL PEAK 33(16P13.3) WILD-TYPE    111    128    117
D62V4, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                           45                            111
  CLUS_2                           42                            128
  CLUS_3                           12                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(16P13.3) MUTATED       11      4     10     34     21
  DEL PEAK 33(16P13.3) WILD-TYPE     80     18     56     41     88
D62V5, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                           11                             80
  CLUS_2                            4                             18
  CLUS_3                           10                             56
  CLUS_4                           34                             41
  CLUS_5                           21                             88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(16P13.3) MUTATED       22     49      9
  DEL PEAK 33(16P13.3) WILD-TYPE    145     84     54
D62V6, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                           22                            145
  CLUS_2                           49                             84
  CLUS_3                            9                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(16P13.3) MUTATED       29      6     23     43      9
  DEL PEAK 33(16P13.3) WILD-TYPE    101    113     67     72     49
D62V7, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                           29                            101
  CLUS_2                            6                            113
  CLUS_3                           23                             67
  CLUS_4                           43                             72
  CLUS_5                            9                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(16P13.3) MUTATED        4     32     23      6     23     15
  DEL PEAK 33(16P13.3) WILD-TYPE     74     78     74     42     30     34
                                vv
clus                             CLUS_7
  DEL PEAK 33(16P13.3) MUTATED        7
  DEL PEAK 33(16P13.3) WILD-TYPE     70
D62V8, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                            4                             74
  CLUS_2                           32                             78
  CLUS_3                           23                             74
  CLUS_4                            6                             42
  CLUS_5                           23                             30
  CLUS_6                           15                             34
  CLUS_7                            7                             70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(16P13.3) MUTATED       24     71     14
  DEL PEAK 33(16P13.3) WILD-TYPE    162    150     89
D62V9, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                           24                            162
  CLUS_2                           71                            150
  CLUS_3                           14                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(16P13.3) MUTATED       11      9     46     13     28      2
  DEL PEAK 33(16P13.3) WILD-TYPE     60     30     99    117     68     27
D62V10, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                           11                             60
  CLUS_2                            9                             30
  CLUS_3                           46                             99
  CLUS_4                           13                            117
  CLUS_5                           28                             68
  CLUS_6                            2                             27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(16P13.3) MUTATED        3     41     18      3     14     17
  DEL PEAK 33(16P13.3) WILD-TYPE     56     49     77     40     56     60
D62V11, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                            3                             56
  CLUS_2                           41                             49
  CLUS_3                           18                             77
  CLUS_4                            3                             40
  CLUS_5                           14                             56
  CLUS_6                           17                             60
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(16P13.3) MUTATED       13     69     14
  DEL PEAK 33(16P13.3) WILD-TYPE     91    169     78
D62V12, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                           13                             91
  CLUS_2                           69                            169
  CLUS_3                           14                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 34(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16Q23.1) MUTATED        4      3      2
  DEL PEAK 34(16Q23.1) WILD-TYPE     11      7      5
D63V1, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                            4                             11
  CLUS_2                            3                              7
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16Q23.1) MUTATED        3      4      2
  DEL PEAK 34(16Q23.1) WILD-TYPE     11      7      5
D63V2, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            4                              7
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16Q23.1) MUTATED       66     54     16     33
  DEL PEAK 34(16Q23.1) WILD-TYPE    106     84    116     41
D63V3, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           66                            106
  CLUS_2                           54                             84
  CLUS_3                           16                            116
  CLUS_4                           33                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16Q23.1) MUTATED       57     67     22
  DEL PEAK 34(16Q23.1) WILD-TYPE     99    103    107
D63V4, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           57                             99
  CLUS_2                           67                            103
  CLUS_3                           22                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16Q23.1) MUTATED       34      8     14     40     23
  DEL PEAK 34(16Q23.1) WILD-TYPE     57     14     52     35     86
D63V5, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           34                             57
  CLUS_2                            8                             14
  CLUS_3                           14                             52
  CLUS_4                           40                             35
  CLUS_5                           23                             86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16Q23.1) MUTATED       46     58     15
  DEL PEAK 34(16Q23.1) WILD-TYPE    121     75     48
D63V6, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           46                            121
  CLUS_2                           58                             75
  CLUS_3                           15                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16Q23.1) MUTATED       68     19     33     39     10
  DEL PEAK 34(16Q23.1) WILD-TYPE     62    100     57     76     48
D63V7, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           68                             62
  CLUS_2                           19                            100
  CLUS_3                           33                             57
  CLUS_4                           39                             76
  CLUS_5                           10                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(16Q23.1) MUTATED       20     59     37      9     17     17
  DEL PEAK 34(16Q23.1) WILD-TYPE     58     51     60     39     36     32
                                vv
clus                             CLUS_7
  DEL PEAK 34(16Q23.1) MUTATED       10
  DEL PEAK 34(16Q23.1) WILD-TYPE     67
D63V8, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           20                             58
  CLUS_2                           59                             51
  CLUS_3                           37                             60
  CLUS_4                            9                             39
  CLUS_5                           17                             36
  CLUS_6                           17                             32
  CLUS_7                           10                             67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16Q23.1) MUTATED       46     86     37
  DEL PEAK 34(16Q23.1) WILD-TYPE    140    135     66
D63V9, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           46                            140
  CLUS_2                           86                            135
  CLUS_3                           37                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(16Q23.1) MUTATED       19     10     64     29     39      8
  DEL PEAK 34(16Q23.1) WILD-TYPE     52     29     81    101     57     21
D63V10, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           19                             52
  CLUS_2                           10                             29
  CLUS_3                           64                             81
  CLUS_4                           29                            101
  CLUS_5                           39                             57
  CLUS_6                            8                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(16Q23.1) MUTATED        5     42     37     12     22     23
  DEL PEAK 34(16Q23.1) WILD-TYPE     54     48     58     31     48     54
D63V11, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                            5                             54
  CLUS_2                           42                             48
  CLUS_3                           37                             58
  CLUS_4                           12                             31
  CLUS_5                           22                             48
  CLUS_6                           23                             54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16Q23.1) MUTATED       19     90     32
  DEL PEAK 34(16Q23.1) WILD-TYPE     85    148     60
D63V12, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           19                             85
  CLUS_2                           90                            148
  CLUS_3                           32                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 35(16Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q24.3) MUTATED        5      3      3
  DEL PEAK 35(16Q24.3) WILD-TYPE     10      7      4
D64V1, multiclass
        clus
vv       DEL PEAK 35(16Q24.3) MUTATED DEL PEAK 35(16Q24.3) WILD-TYPE
  CLUS_1                            5                             10
  CLUS_2                            3                              7
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q24.3) MUTATED        4      4      3
  DEL PEAK 35(16Q24.3) WILD-TYPE     10      7      4
D64V2, multiclass
        clus
vv       DEL PEAK 35(16Q24.3) MUTATED DEL PEAK 35(16Q24.3) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            4                              7
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q24.3) MUTATED       73     57     22     36
  DEL PEAK 35(16Q24.3) WILD-TYPE     99     81    110     38
D64V3, multiclass
        clus
vv       DEL PEAK 35(16Q24.3) MUTATED DEL PEAK 35(16Q24.3) WILD-TYPE
  CLUS_1                           73                             99
  CLUS_2                           57                             81
  CLUS_3                           22                            110
  CLUS_4                           36                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q24.3) MUTATED       64     71     28
  DEL PEAK 35(16Q24.3) WILD-TYPE     92     99    101
D64V4, multiclass
        clus
vv       DEL PEAK 35(16Q24.3) MUTATED DEL PEAK 35(16Q24.3) WILD-TYPE
  CLUS_1                           64                             92
  CLUS_2                           71                             99
  CLUS_3                           28                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(16Q24.3) MUTATED       36      8     17     37     32
  DEL PEAK 35(16Q24.3) WILD-TYPE     55     14     49     38     77
D64V5, multiclass
        clus
vv       DEL PEAK 35(16Q24.3) MUTATED DEL PEAK 35(16Q24.3) WILD-TYPE
  CLUS_1                           36                             55
  CLUS_2                            8                             14
  CLUS_3                           17                             49
  CLUS_4                           37                             38
  CLUS_5                           32                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q24.3) MUTATED       51     60     19
  DEL PEAK 35(16Q24.3) WILD-TYPE    116     73     44
D64V6, multiclass
        clus
vv       DEL PEAK 35(16Q24.3) MUTATED DEL PEAK 35(16Q24.3) WILD-TYPE
  CLUS_1                           51                            116
  CLUS_2                           60                             73
  CLUS_3                           19                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(16Q24.3) MUTATED       71     24     31     48     14
  DEL PEAK 35(16Q24.3) WILD-TYPE     59     95     59     67     44
D64V7, multiclass
        clus
vv       DEL PEAK 35(16Q24.3) MUTATED DEL PEAK 35(16Q24.3) WILD-TYPE
  CLUS_1                           71                             59
  CLUS_2                           24                             95
  CLUS_3                           31                             59
  CLUS_4                           48                             67
  CLUS_5                           14                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(16Q24.3) MUTATED       24     60     42     10     24     15
  DEL PEAK 35(16Q24.3) WILD-TYPE     54     50     55     38     29     34
                                vv
clus                             CLUS_7
  DEL PEAK 35(16Q24.3) MUTATED       13
  DEL PEAK 35(16Q24.3) WILD-TYPE     64
D64V8, multiclass
        clus
vv       DEL PEAK 35(16Q24.3) MUTATED DEL PEAK 35(16Q24.3) WILD-TYPE
  CLUS_1                           24                             54
  CLUS_2                           60                             50
  CLUS_3                           42                             55
  CLUS_4                           10                             38
  CLUS_5                           24                             29
  CLUS_6                           15                             34
  CLUS_7                           13                             64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q24.3) MUTATED       53     95     40
  DEL PEAK 35(16Q24.3) WILD-TYPE    133    126     63
D64V9, multiclass
        clus
vv       DEL PEAK 35(16Q24.3) MUTATED DEL PEAK 35(16Q24.3) WILD-TYPE
  CLUS_1                           53                            133
  CLUS_2                           95                            126
  CLUS_3                           40                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(16Q24.3) MUTATED       21     12     70     32     44      9
  DEL PEAK 35(16Q24.3) WILD-TYPE     50     27     75     98     52     20
D64V10, multiclass
        clus
vv       DEL PEAK 35(16Q24.3) MUTATED DEL PEAK 35(16Q24.3) WILD-TYPE
  CLUS_1                           21                             50
  CLUS_2                           12                             27
  CLUS_3                           70                             75
  CLUS_4                           32                             98
  CLUS_5                           44                             52
  CLUS_6                            9                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(16Q24.3) MUTATED        8     49     40     13     22     26
  DEL PEAK 35(16Q24.3) WILD-TYPE     51     41     55     30     48     51
D64V11, multiclass
        clus
vv       DEL PEAK 35(16Q24.3) MUTATED DEL PEAK 35(16Q24.3) WILD-TYPE
  CLUS_1                            8                             51
  CLUS_2                           49                             41
  CLUS_3                           40                             55
  CLUS_4                           13                             30
  CLUS_5                           22                             48
  CLUS_6                           26                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q24.3) MUTATED       20    100     38
  DEL PEAK 35(16Q24.3) WILD-TYPE     84    138     54
D64V12, multiclass
        clus
vv       DEL PEAK 35(16Q24.3) MUTATED DEL PEAK 35(16Q24.3) WILD-TYPE
  CLUS_1                           20                             84
  CLUS_2                          100                            138
  CLUS_3                           38                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 36(17P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P13.3) MUTATED       10      8      6
  DEL PEAK 36(17P13.3) WILD-TYPE      5      2      1
D65V1, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           10                              5
  CLUS_2                            8                              2
  CLUS_3                            6                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P13.3) MUTATED        9      9      6
  DEL PEAK 36(17P13.3) WILD-TYPE      5      2      1
D65V2, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                            9                              5
  CLUS_2                            9                              2
  CLUS_3                            6                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(17P13.3) MUTATED      125     84     32     40
  DEL PEAK 36(17P13.3) WILD-TYPE     47     54    100     34
D65V3, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                          125                             47
  CLUS_2                           84                             54
  CLUS_3                           32                            100
  CLUS_4                           40                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P13.3) MUTATED       85    111     50
  DEL PEAK 36(17P13.3) WILD-TYPE     71     59     79
D65V4, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           85                             71
  CLUS_2                          111                             59
  CLUS_3                           50                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(17P13.3) MUTATED       63     12     30     46     55
  DEL PEAK 36(17P13.3) WILD-TYPE     28     10     36     29     54
D65V5, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           63                             28
  CLUS_2                           12                             10
  CLUS_3                           30                             36
  CLUS_4                           46                             29
  CLUS_5                           55                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P13.3) MUTATED       93     78     35
  DEL PEAK 36(17P13.3) WILD-TYPE     74     55     28
D65V6, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           93                             74
  CLUS_2                           78                             55
  CLUS_3                           35                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(17P13.3) MUTATED       93     42     47     68     29
  DEL PEAK 36(17P13.3) WILD-TYPE     37     77     43     47     29
D65V7, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           93                             37
  CLUS_2                           42                             77
  CLUS_3                           47                             43
  CLUS_4                           68                             47
  CLUS_5                           29                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(17P13.3) MUTATED       37     77     61     10     34     24
  DEL PEAK 36(17P13.3) WILD-TYPE     41     33     36     38     19     25
                                vv
clus                             CLUS_7
  DEL PEAK 36(17P13.3) MUTATED       36
  DEL PEAK 36(17P13.3) WILD-TYPE     41
D65V8, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           37                             41
  CLUS_2                           77                             33
  CLUS_3                           61                             36
  CLUS_4                           10                             38
  CLUS_5                           34                             19
  CLUS_6                           24                             25
  CLUS_7                           36                             41
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P13.3) MUTATED       88    135     54
  DEL PEAK 36(17P13.3) WILD-TYPE     98     86     49
D65V9, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           88                             98
  CLUS_2                          135                             86
  CLUS_3                           54                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(17P13.3) MUTATED       30     23     90     63     58     13
  DEL PEAK 36(17P13.3) WILD-TYPE     41     16     55     67     38     16
D65V10, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           30                             41
  CLUS_2                           23                             16
  CLUS_3                           90                             55
  CLUS_4                           63                             67
  CLUS_5                           58                             38
  CLUS_6                           13                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(17P13.3) MUTATED       14     53     63     18     38     47
  DEL PEAK 36(17P13.3) WILD-TYPE     45     37     32     25     32     30
D65V11, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           14                             45
  CLUS_2                           53                             37
  CLUS_3                           63                             32
  CLUS_4                           18                             25
  CLUS_5                           38                             32
  CLUS_6                           47                             30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P13.3) MUTATED       41    140     52
  DEL PEAK 36(17P13.3) WILD-TYPE     63     98     40
D65V12, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           41                             63
  CLUS_2                          140                             98
  CLUS_3                           52                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 37(18Q21.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q21.32) MUTATED        4      8      4
  DEL PEAK 37(18Q21.32) WILD-TYPE     11      2      3
D66V1, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                             4                              11
  CLUS_2                             8                               2
  CLUS_3                             4                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q21.32) MUTATED        4      8      4
  DEL PEAK 37(18Q21.32) WILD-TYPE     10      3      3
D66V2, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             8                               3
  CLUS_3                             4                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(18Q21.32) MUTATED      113     79     41     22
  DEL PEAK 37(18Q21.32) WILD-TYPE     59     59     91     52
D66V3, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                           113                              59
  CLUS_2                            79                              59
  CLUS_3                            41                              91
  CLUS_4                            22                              52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q21.32) MUTATED       75     90     62
  DEL PEAK 37(18Q21.32) WILD-TYPE     81     80     67
D66V4, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            75                              81
  CLUS_2                            90                              80
  CLUS_3                            62                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(18Q21.32) MUTATED       51     12     30     50     40
  DEL PEAK 37(18Q21.32) WILD-TYPE     40     10     36     25     69
D66V5, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            51                              40
  CLUS_2                            12                              10
  CLUS_3                            30                              36
  CLUS_4                            50                              25
  CLUS_5                            40                              69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q21.32) MUTATED       74     80     29
  DEL PEAK 37(18Q21.32) WILD-TYPE     93     53     34
D66V6, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            74                              93
  CLUS_2                            80                              53
  CLUS_3                            29                              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(18Q21.32) MUTATED       88     42     50     45     27
  DEL PEAK 37(18Q21.32) WILD-TYPE     42     77     40     70     31
D66V7, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            88                              42
  CLUS_2                            42                              77
  CLUS_3                            50                              40
  CLUS_4                            45                              70
  CLUS_5                            27                              31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(18Q21.32) MUTATED       39     65     58     10     17     29
  DEL PEAK 37(18Q21.32) WILD-TYPE     39     45     39     38     36     20
                                 vv
clus                              CLUS_7
  DEL PEAK 37(18Q21.32) MUTATED       34
  DEL PEAK 37(18Q21.32) WILD-TYPE     43
D66V8, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            39                              39
  CLUS_2                            65                              45
  CLUS_3                            58                              39
  CLUS_4                            10                              38
  CLUS_5                            17                              36
  CLUS_6                            29                              20
  CLUS_7                            34                              43
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q21.32) MUTATED       74    115     62
  DEL PEAK 37(18Q21.32) WILD-TYPE    112    106     41
D66V9, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            74                             112
  CLUS_2                           115                             106
  CLUS_3                            62                              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(18Q21.32) MUTATED       28     18     80     60     51     14
  DEL PEAK 37(18Q21.32) WILD-TYPE     43     21     65     70     45     15
D66V10, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            28                              43
  CLUS_2                            18                              21
  CLUS_3                            80                              65
  CLUS_4                            60                              70
  CLUS_5                            51                              45
  CLUS_6                            14                              15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(18Q21.32) MUTATED       24     37     59     20     37     40
  DEL PEAK 37(18Q21.32) WILD-TYPE     35     53     36     23     33     37
D66V11, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            24                              35
  CLUS_2                            37                              53
  CLUS_3                            59                              36
  CLUS_4                            20                              23
  CLUS_5                            37                              33
  CLUS_6                            40                              37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q21.32) MUTATED       40    124     53
  DEL PEAK 37(18Q21.32) WILD-TYPE     64    114     39
D66V12, multiclass
        clus
vv       DEL PEAK 37(18Q21.32) MUTATED DEL PEAK 37(18Q21.32) WILD-TYPE
  CLUS_1                            40                              64
  CLUS_2                           124                             114
  CLUS_3                            53                              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 38(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18Q23) MUTATED        4      9      4
  DEL PEAK 38(18Q23) WILD-TYPE     11      1      3
D67V1, multiclass
        clus
vv       DEL PEAK 38(18Q23) MUTATED DEL PEAK 38(18Q23) WILD-TYPE
  CLUS_1                          4                           11
  CLUS_2                          9                            1
  CLUS_3                          4                            3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18Q23) MUTATED        4      9      4
  DEL PEAK 38(18Q23) WILD-TYPE     10      2      3
D67V2, multiclass
        clus
vv       DEL PEAK 38(18Q23) MUTATED DEL PEAK 38(18Q23) WILD-TYPE
  CLUS_1                          4                           10
  CLUS_2                          9                            2
  CLUS_3                          4                            3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(18Q23) MUTATED      112     78     40     19
  DEL PEAK 38(18Q23) WILD-TYPE     60     60     92     55
D67V3, multiclass
        clus
vv       DEL PEAK 38(18Q23) MUTATED DEL PEAK 38(18Q23) WILD-TYPE
  CLUS_1                        112                           60
  CLUS_2                         78                           60
  CLUS_3                         40                           92
  CLUS_4                         19                           55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18Q23) MUTATED       70     89     61
  DEL PEAK 38(18Q23) WILD-TYPE     86     81     68
D67V4, multiclass
        clus
vv       DEL PEAK 38(18Q23) MUTATED DEL PEAK 38(18Q23) WILD-TYPE
  CLUS_1                         70                           86
  CLUS_2                         89                           81
  CLUS_3                         61                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(18Q23) MUTATED       52     13     27     48     38
  DEL PEAK 38(18Q23) WILD-TYPE     39      9     39     27     71
D67V5, multiclass
        clus
vv       DEL PEAK 38(18Q23) MUTATED DEL PEAK 38(18Q23) WILD-TYPE
  CLUS_1                         52                           39
  CLUS_2                         13                            9
  CLUS_3                         27                           39
  CLUS_4                         48                           27
  CLUS_5                         38                           71
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18Q23) MUTATED       71     79     28
  DEL PEAK 38(18Q23) WILD-TYPE     96     54     35
D67V6, multiclass
        clus
vv       DEL PEAK 38(18Q23) MUTATED DEL PEAK 38(18Q23) WILD-TYPE
  CLUS_1                         71                           96
  CLUS_2                         79                           54
  CLUS_3                         28                           35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(18Q23) MUTATED       88     42     49     41     27
  DEL PEAK 38(18Q23) WILD-TYPE     42     77     41     74     31
D67V7, multiclass
        clus
vv       DEL PEAK 38(18Q23) MUTATED DEL PEAK 38(18Q23) WILD-TYPE
  CLUS_1                         88                           42
  CLUS_2                         42                           77
  CLUS_3                         49                           41
  CLUS_4                         41                           74
  CLUS_5                         27                           31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 38(18Q23) MUTATED       36     66     56     10     17     28     34
  DEL PEAK 38(18Q23) WILD-TYPE     42     44     41     38     36     21     43
D67V8, multiclass
        clus
vv       DEL PEAK 38(18Q23) MUTATED DEL PEAK 38(18Q23) WILD-TYPE
  CLUS_1                         36                           42
  CLUS_2                         66                           44
  CLUS_3                         56                           41
  CLUS_4                         10                           38
  CLUS_5                         17                           36
  CLUS_6                         28                           21
  CLUS_7                         34                           43
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18Q23) MUTATED       72    112     62
  DEL PEAK 38(18Q23) WILD-TYPE    114    109     41
D67V9, multiclass
        clus
vv       DEL PEAK 38(18Q23) MUTATED DEL PEAK 38(18Q23) WILD-TYPE
  CLUS_1                         72                          114
  CLUS_2                        112                          109
  CLUS_3                         62                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(18Q23) MUTATED       28     18     79     57     50     14
  DEL PEAK 38(18Q23) WILD-TYPE     43     21     66     73     46     15
D67V10, multiclass
        clus
vv       DEL PEAK 38(18Q23) MUTATED DEL PEAK 38(18Q23) WILD-TYPE
  CLUS_1                         28                           43
  CLUS_2                         18                           21
  CLUS_3                         79                           66
  CLUS_4                         57                           73
  CLUS_5                         50                           46
  CLUS_6                         14                           15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(18Q23) MUTATED       24     35     56     19     37     40
  DEL PEAK 38(18Q23) WILD-TYPE     35     55     39     24     33     37
D67V11, multiclass
        clus
vv       DEL PEAK 38(18Q23) MUTATED DEL PEAK 38(18Q23) WILD-TYPE
  CLUS_1                         24                           35
  CLUS_2                         35                           55
  CLUS_3                         56                           39
  CLUS_4                         19                           24
  CLUS_5                         37                           33
  CLUS_6                         40                           37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18Q23) MUTATED       40    122     49
  DEL PEAK 38(18Q23) WILD-TYPE     64    116     43
D67V12, multiclass
        clus
vv       DEL PEAK 38(18Q23) MUTATED DEL PEAK 38(18Q23) WILD-TYPE
  CLUS_1                         40                           64
  CLUS_2                        122                          116
  CLUS_3                         49                           43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 39(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.3) MUTATED        6      4      4
  DEL PEAK 39(19P13.3) WILD-TYPE      9      6      3
D68V1, multiclass
        clus
vv       DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  CLUS_1                            6                              9
  CLUS_2                            4                              6
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.3) MUTATED        6      4      4
  DEL PEAK 39(19P13.3) WILD-TYPE      8      7      3
D68V2, multiclass
        clus
vv       DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            4                              7
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(19P13.3) MUTATED       85     99     43     49
  DEL PEAK 39(19P13.3) WILD-TYPE     87     39     89     25
D68V3, multiclass
        clus
vv       DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  CLUS_1                           85                             87
  CLUS_2                           99                             39
  CLUS_3                           43                             89
  CLUS_4                           49                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.3) MUTATED      122     79     41
  DEL PEAK 39(19P13.3) WILD-TYPE     34     91     88
D68V4, multiclass
        clus
vv       DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  CLUS_1                          122                             34
  CLUS_2                           79                             91
  CLUS_3                           41                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(19P13.3) MUTATED       41     12     44     53     50
  DEL PEAK 39(19P13.3) WILD-TYPE     50     10     22     22     59
D68V5, multiclass
        clus
vv       DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  CLUS_1                           41                             50
  CLUS_2                           12                             10
  CLUS_3                           44                             22
  CLUS_4                           53                             22
  CLUS_5                           50                             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.3) MUTATED       88     84     28
  DEL PEAK 39(19P13.3) WILD-TYPE     79     49     35
D68V6, multiclass
        clus
vv       DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  CLUS_1                           88                             79
  CLUS_2                           84                             49
  CLUS_3                           28                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(19P13.3) MUTATED       65     50     55     83     20
  DEL PEAK 39(19P13.3) WILD-TYPE     65     69     35     32     38
D68V7, multiclass
        clus
vv       DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  CLUS_1                           65                             65
  CLUS_2                           50                             69
  CLUS_3                           55                             35
  CLUS_4                           83                             32
  CLUS_5                           20                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(19P13.3) MUTATED       25     49     63     39     34     42
  DEL PEAK 39(19P13.3) WILD-TYPE     53     61     34      9     19      7
                                vv
clus                             CLUS_7
  DEL PEAK 39(19P13.3) MUTATED       21
  DEL PEAK 39(19P13.3) WILD-TYPE     56
D68V8, multiclass
        clus
vv       DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  CLUS_1                           25                             53
  CLUS_2                           49                             61
  CLUS_3                           63                             34
  CLUS_4                           39                              9
  CLUS_5                           34                             19
  CLUS_6                           42                              7
  CLUS_7                           21                             56
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.3) MUTATED       78    147     45
  DEL PEAK 39(19P13.3) WILD-TYPE    108     74     58
D68V9, multiclass
        clus
vv       DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  CLUS_1                           78                            108
  CLUS_2                          147                             74
  CLUS_3                           45                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(19P13.3) MUTATED       34     25     86     46     68     11
  DEL PEAK 39(19P13.3) WILD-TYPE     37     14     59     84     28     18
D68V10, multiclass
        clus
vv       DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  CLUS_1                           34                             37
  CLUS_2                           25                             14
  CLUS_3                           86                             59
  CLUS_4                           46                             84
  CLUS_5                           68                             28
  CLUS_6                           11                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(19P13.3) MUTATED       26     65     52     18     36     35
  DEL PEAK 39(19P13.3) WILD-TYPE     33     25     43     25     34     42
D68V11, multiclass
        clus
vv       DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  CLUS_1                           26                             33
  CLUS_2                           65                             25
  CLUS_3                           52                             43
  CLUS_4                           18                             25
  CLUS_5                           36                             34
  CLUS_6                           35                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.3) MUTATED       47    147     38
  DEL PEAK 39(19P13.3) WILD-TYPE     57     91     54
D68V12, multiclass
        clus
vv       DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  CLUS_1                           47                             57
  CLUS_2                          147                             91
  CLUS_3                           38                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 40(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19P13.2) MUTATED        6      5      3
  DEL PEAK 40(19P13.2) WILD-TYPE      9      5      4
D69V1, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                            6                              9
  CLUS_2                            5                              5
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19P13.2) MUTATED        6      5      3
  DEL PEAK 40(19P13.2) WILD-TYPE      8      6      4
D69V2, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            5                              6
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(19P13.2) MUTATED       83     93     40     53
  DEL PEAK 40(19P13.2) WILD-TYPE     89     45     92     21
D69V3, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           83                             89
  CLUS_2                           93                             45
  CLUS_3                           40                             92
  CLUS_4                           53                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19P13.2) MUTATED      120     82     34
  DEL PEAK 40(19P13.2) WILD-TYPE     36     88     95
D69V4, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                          120                             36
  CLUS_2                           82                             88
  CLUS_3                           34                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(19P13.2) MUTATED       39     12     44     50     47
  DEL PEAK 40(19P13.2) WILD-TYPE     52     10     22     25     62
D69V5, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           39                             52
  CLUS_2                           12                             10
  CLUS_3                           44                             22
  CLUS_4                           50                             25
  CLUS_5                           47                             62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19P13.2) MUTATED       85     78     29
  DEL PEAK 40(19P13.2) WILD-TYPE     82     55     34
D69V6, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           85                             82
  CLUS_2                           78                             55
  CLUS_3                           29                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(19P13.2) MUTATED       66     47     50     83     20
  DEL PEAK 40(19P13.2) WILD-TYPE     64     72     40     32     38
D69V7, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           66                             64
  CLUS_2                           47                             72
  CLUS_3                           50                             40
  CLUS_4                           83                             32
  CLUS_5                           20                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(19P13.2) MUTATED       22     52     54     38     40     38
  DEL PEAK 40(19P13.2) WILD-TYPE     56     58     43     10     13     11
                                vv
clus                             CLUS_7
  DEL PEAK 40(19P13.2) MUTATED       22
  DEL PEAK 40(19P13.2) WILD-TYPE     55
D69V8, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           22                             56
  CLUS_2                           52                             58
  CLUS_3                           54                             43
  CLUS_4                           38                             10
  CLUS_5                           40                             13
  CLUS_6                           38                             11
  CLUS_7                           22                             55
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19P13.2) MUTATED       76    144     43
  DEL PEAK 40(19P13.2) WILD-TYPE    110     77     60
D69V9, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           76                            110
  CLUS_2                          144                             77
  CLUS_3                           43                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(19P13.2) MUTATED       34     26     81     45     66     11
  DEL PEAK 40(19P13.2) WILD-TYPE     37     13     64     85     30     18
D69V10, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           34                             37
  CLUS_2                           26                             13
  CLUS_3                           81                             64
  CLUS_4                           45                             85
  CLUS_5                           66                             30
  CLUS_6                           11                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(19P13.2) MUTATED       22     66     51     16     39     33
  DEL PEAK 40(19P13.2) WILD-TYPE     37     24     44     27     31     44
D69V11, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           22                             37
  CLUS_2                           66                             24
  CLUS_3                           51                             44
  CLUS_4                           16                             27
  CLUS_5                           39                             31
  CLUS_6                           33                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19P13.2) MUTATED       44    145     38
  DEL PEAK 40(19P13.2) WILD-TYPE     60     93     54
D69V12, multiclass
        clus
vv       DEL PEAK 40(19P13.2) MUTATED DEL PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           44                             60
  CLUS_2                          145                             93
  CLUS_3                           38                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 41(19Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19Q13.33) MUTATED        4      7      3
  DEL PEAK 41(19Q13.33) WILD-TYPE     11      3      4
D70V1, multiclass
        clus
vv       DEL PEAK 41(19Q13.33) MUTATED DEL PEAK 41(19Q13.33) WILD-TYPE
  CLUS_1                             4                              11
  CLUS_2                             7                               3
  CLUS_3                             3                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19Q13.33) MUTATED        4      7      3
  DEL PEAK 41(19Q13.33) WILD-TYPE     10      4      4
D70V2, multiclass
        clus
vv       DEL PEAK 41(19Q13.33) MUTATED DEL PEAK 41(19Q13.33) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             7                               4
  CLUS_3                             3                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(19Q13.33) MUTATED       77     62     27     29
  DEL PEAK 41(19Q13.33) WILD-TYPE     95     76    105     45
D70V3, multiclass
        clus
vv       DEL PEAK 41(19Q13.33) MUTATED DEL PEAK 41(19Q13.33) WILD-TYPE
  CLUS_1                            77                              95
  CLUS_2                            62                              76
  CLUS_3                            27                             105
  CLUS_4                            29                              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19Q13.33) MUTATED       72     68     24
  DEL PEAK 41(19Q13.33) WILD-TYPE     84    102    105
D70V4, multiclass
        clus
vv       DEL PEAK 41(19Q13.33) MUTATED DEL PEAK 41(19Q13.33) WILD-TYPE
  CLUS_1                            72                              84
  CLUS_2                            68                             102
  CLUS_3                            24                             105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(19Q13.33) MUTATED       31      9     35     34     32
  DEL PEAK 41(19Q13.33) WILD-TYPE     60     13     31     41     77
D70V5, multiclass
        clus
vv       DEL PEAK 41(19Q13.33) MUTATED DEL PEAK 41(19Q13.33) WILD-TYPE
  CLUS_1                            31                              60
  CLUS_2                             9                              13
  CLUS_3                            35                              31
  CLUS_4                            34                              41
  CLUS_5                            32                              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19Q13.33) MUTATED       65     63     13
  DEL PEAK 41(19Q13.33) WILD-TYPE    102     70     50
D70V6, multiclass
        clus
vv       DEL PEAK 41(19Q13.33) MUTATED DEL PEAK 41(19Q13.33) WILD-TYPE
  CLUS_1                            65                             102
  CLUS_2                            63                              70
  CLUS_3                            13                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(19Q13.33) MUTATED       59     32     33     54     14
  DEL PEAK 41(19Q13.33) WILD-TYPE     71     87     57     61     44
D70V7, multiclass
        clus
vv       DEL PEAK 41(19Q13.33) MUTATED DEL PEAK 41(19Q13.33) WILD-TYPE
  CLUS_1                            59                              71
  CLUS_2                            32                              87
  CLUS_3                            33                              57
  CLUS_4                            54                              61
  CLUS_5                            14                              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(19Q13.33) MUTATED       19     47     45     23     24     23
  DEL PEAK 41(19Q13.33) WILD-TYPE     59     63     52     25     29     26
                                 vv
clus                              CLUS_7
  DEL PEAK 41(19Q13.33) MUTATED       11
  DEL PEAK 41(19Q13.33) WILD-TYPE     66
D70V8, multiclass
        clus
vv       DEL PEAK 41(19Q13.33) MUTATED DEL PEAK 41(19Q13.33) WILD-TYPE
  CLUS_1                            19                              59
  CLUS_2                            47                              63
  CLUS_3                            45                              52
  CLUS_4                            23                              25
  CLUS_5                            24                              29
  CLUS_6                            23                              26
  CLUS_7                            11                              66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19Q13.33) MUTATED       46    105     39
  DEL PEAK 41(19Q13.33) WILD-TYPE    140    116     64
D70V9, multiclass
        clus
vv       DEL PEAK 41(19Q13.33) MUTATED DEL PEAK 41(19Q13.33) WILD-TYPE
  CLUS_1                            46                             140
  CLUS_2                           105                             116
  CLUS_3                            39                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(19Q13.33) MUTATED       21     22     57     28     48     14
  DEL PEAK 41(19Q13.33) WILD-TYPE     50     17     88    102     48     15
D70V10, multiclass
        clus
vv       DEL PEAK 41(19Q13.33) MUTATED DEL PEAK 41(19Q13.33) WILD-TYPE
  CLUS_1                            21                              50
  CLUS_2                            22                              17
  CLUS_3                            57                              88
  CLUS_4                            28                             102
  CLUS_5                            48                              48
  CLUS_6                            14                              15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(19Q13.33) MUTATED       13     42     35     16     25     24
  DEL PEAK 41(19Q13.33) WILD-TYPE     46     48     60     27     45     53
D70V11, multiclass
        clus
vv       DEL PEAK 41(19Q13.33) MUTATED DEL PEAK 41(19Q13.33) WILD-TYPE
  CLUS_1                            13                              46
  CLUS_2                            42                              48
  CLUS_3                            35                              60
  CLUS_4                            16                              27
  CLUS_5                            25                              45
  CLUS_6                            24                              53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(19Q13.33) MUTATED       27     99     29
  DEL PEAK 41(19Q13.33) WILD-TYPE     77    139     63
D70V12, multiclass
        clus
vv       DEL PEAK 41(19Q13.33) MUTATED DEL PEAK 41(19Q13.33) WILD-TYPE
  CLUS_1                            27                              77
  CLUS_2                            99                             139
  CLUS_3                            29                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 42(20P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20P13) MUTATED        3      3      3
  DEL PEAK 42(20P13) WILD-TYPE     12      7      4
D71V1, multiclass
        clus
vv       DEL PEAK 42(20P13) MUTATED DEL PEAK 42(20P13) WILD-TYPE
  CLUS_1                          3                           12
  CLUS_2                          3                            7
  CLUS_3                          3                            4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20P13) MUTATED        2      4      3
  DEL PEAK 42(20P13) WILD-TYPE     12      7      4
D71V2, multiclass
        clus
vv       DEL PEAK 42(20P13) MUTATED DEL PEAK 42(20P13) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          4                            7
  CLUS_3                          3                            4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(20P13) MUTATED       61     37     22     10
  DEL PEAK 42(20P13) WILD-TYPE    111    101    110     64
D71V3, multiclass
        clus
vv       DEL PEAK 42(20P13) MUTATED DEL PEAK 42(20P13) WILD-TYPE
  CLUS_1                         61                          111
  CLUS_2                         37                          101
  CLUS_3                         22                          110
  CLUS_4                         10                           64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20P13) MUTATED       26     59     30
  DEL PEAK 42(20P13) WILD-TYPE    130    111     99
D71V4, multiclass
        clus
vv       DEL PEAK 42(20P13) MUTATED DEL PEAK 42(20P13) WILD-TYPE
  CLUS_1                         26                          130
  CLUS_2                         59                          111
  CLUS_3                         30                           99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(20P13) MUTATED       33      2     15     22     22
  DEL PEAK 42(20P13) WILD-TYPE     58     20     51     53     87
D71V5, multiclass
        clus
vv       DEL PEAK 42(20P13) MUTATED DEL PEAK 42(20P13) WILD-TYPE
  CLUS_1                         33                           58
  CLUS_2                          2                           20
  CLUS_3                         15                           51
  CLUS_4                         22                           53
  CLUS_5                         22                           87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20P13) MUTATED       40     41     13
  DEL PEAK 42(20P13) WILD-TYPE    127     92     50
D71V6, multiclass
        clus
vv       DEL PEAK 42(20P13) MUTATED DEL PEAK 42(20P13) WILD-TYPE
  CLUS_1                         40                          127
  CLUS_2                         41                           92
  CLUS_3                         13                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(20P13) MUTATED       52     21     26     15     15
  DEL PEAK 42(20P13) WILD-TYPE     78     98     64    100     43
D71V7, multiclass
        clus
vv       DEL PEAK 42(20P13) MUTATED DEL PEAK 42(20P13) WILD-TYPE
  CLUS_1                         52                           78
  CLUS_2                         21                           98
  CLUS_3                         26                           64
  CLUS_4                         15                          100
  CLUS_5                         15                           43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 42(20P13) MUTATED       23     43     20      0     10     16     17
  DEL PEAK 42(20P13) WILD-TYPE     55     67     77     48     43     33     60
D71V8, multiclass
        clus
vv       DEL PEAK 42(20P13) MUTATED DEL PEAK 42(20P13) WILD-TYPE
  CLUS_1                         23                           55
  CLUS_2                         43                           67
  CLUS_3                         20                           77
  CLUS_4                          0                           48
  CLUS_5                         10                           43
  CLUS_6                         16                           33
  CLUS_7                         17                           60
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20P13) MUTATED       46     56     24
  DEL PEAK 42(20P13) WILD-TYPE    140    165     79
D71V9, multiclass
        clus
vv       DEL PEAK 42(20P13) MUTATED DEL PEAK 42(20P13) WILD-TYPE
  CLUS_1                         46                          140
  CLUS_2                         56                          165
  CLUS_3                         24                           79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(20P13) MUTATED       16     11     43     30     19      7
  DEL PEAK 42(20P13) WILD-TYPE     55     28    102    100     77     22
D71V10, multiclass
        clus
vv       DEL PEAK 42(20P13) MUTATED DEL PEAK 42(20P13) WILD-TYPE
  CLUS_1                         16                           55
  CLUS_2                         11                           28
  CLUS_3                         43                          102
  CLUS_4                         30                          100
  CLUS_5                         19                           77
  CLUS_6                          7                           22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(20P13) MUTATED        8     22     33      5     20     18
  DEL PEAK 42(20P13) WILD-TYPE     51     68     62     38     50     59
D71V11, multiclass
        clus
vv       DEL PEAK 42(20P13) MUTATED DEL PEAK 42(20P13) WILD-TYPE
  CLUS_1                          8                           51
  CLUS_2                         22                           68
  CLUS_3                         33                           62
  CLUS_4                          5                           38
  CLUS_5                         20                           50
  CLUS_6                         18                           59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20P13) MUTATED       17     59     30
  DEL PEAK 42(20P13) WILD-TYPE     87    179     62
D71V12, multiclass
        clus
vv       DEL PEAK 42(20P13) MUTATED DEL PEAK 42(20P13) WILD-TYPE
  CLUS_1                         17                           87
  CLUS_2                         59                          179
  CLUS_3                         30                           62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 43(20Q13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20Q13.12) MUTATED        6      1      1
  DEL PEAK 43(20Q13.12) WILD-TYPE      9      9      6
D72V1, multiclass
        clus
vv       DEL PEAK 43(20Q13.12) MUTATED DEL PEAK 43(20Q13.12) WILD-TYPE
  CLUS_1                             6                               9
  CLUS_2                             1                               9
  CLUS_3                             1                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20Q13.12) MUTATED        5      2      1
  DEL PEAK 43(20Q13.12) WILD-TYPE      9      9      6
D72V2, multiclass
        clus
vv       DEL PEAK 43(20Q13.12) MUTATED DEL PEAK 43(20Q13.12) WILD-TYPE
  CLUS_1                             5                               9
  CLUS_2                             2                               9
  CLUS_3                             1                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(20Q13.12) MUTATED       23     19     26     14
  DEL PEAK 43(20Q13.12) WILD-TYPE    149    119    106     60
D72V3, multiclass
        clus
vv       DEL PEAK 43(20Q13.12) MUTATED DEL PEAK 43(20Q13.12) WILD-TYPE
  CLUS_1                            23                             149
  CLUS_2                            19                             119
  CLUS_3                            26                             106
  CLUS_4                            14                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20Q13.12) MUTATED       21     31     16
  DEL PEAK 43(20Q13.12) WILD-TYPE    135    139    113
D72V4, multiclass
        clus
vv       DEL PEAK 43(20Q13.12) MUTATED DEL PEAK 43(20Q13.12) WILD-TYPE
  CLUS_1                            21                             135
  CLUS_2                            31                             139
  CLUS_3                            16                             113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(20Q13.12) MUTATED       16      2     15     15     10
  DEL PEAK 43(20Q13.12) WILD-TYPE     75     20     51     60     99
D72V5, multiclass
        clus
vv       DEL PEAK 43(20Q13.12) MUTATED DEL PEAK 43(20Q13.12) WILD-TYPE
  CLUS_1                            16                              75
  CLUS_2                             2                              20
  CLUS_3                            15                              51
  CLUS_4                            15                              60
  CLUS_5                            10                              99
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20Q13.12) MUTATED       30     23      5
  DEL PEAK 43(20Q13.12) WILD-TYPE    137    110     58
D72V6, multiclass
        clus
vv       DEL PEAK 43(20Q13.12) MUTATED DEL PEAK 43(20Q13.12) WILD-TYPE
  CLUS_1                            30                             137
  CLUS_2                            23                             110
  CLUS_3                             5                              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(20Q13.12) MUTATED       17     25     18     15      7
  DEL PEAK 43(20Q13.12) WILD-TYPE    113     94     72    100     51
D72V7, multiclass
        clus
vv       DEL PEAK 43(20Q13.12) MUTATED DEL PEAK 43(20Q13.12) WILD-TYPE
  CLUS_1                            17                             113
  CLUS_2                            25                              94
  CLUS_3                            18                              72
  CLUS_4                            15                             100
  CLUS_5                             7                              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(20Q13.12) MUTATED       18     17      6     12      8     13
  DEL PEAK 43(20Q13.12) WILD-TYPE     60     93     91     36     45     36
                                 vv
clus                              CLUS_7
  DEL PEAK 43(20Q13.12) MUTATED        8
  DEL PEAK 43(20Q13.12) WILD-TYPE     69
D72V8, multiclass
        clus
vv       DEL PEAK 43(20Q13.12) MUTATED DEL PEAK 43(20Q13.12) WILD-TYPE
  CLUS_1                            18                              60
  CLUS_2                            17                              93
  CLUS_3                             6                              91
  CLUS_4                            12                              36
  CLUS_5                             8                              45
  CLUS_6                            13                              36
  CLUS_7                             8                              69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20Q13.12) MUTATED       35     37     10
  DEL PEAK 43(20Q13.12) WILD-TYPE    151    184     93
D72V9, multiclass
        clus
vv       DEL PEAK 43(20Q13.12) MUTATED DEL PEAK 43(20Q13.12) WILD-TYPE
  CLUS_1                            35                             151
  CLUS_2                            37                             184
  CLUS_3                            10                              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(20Q13.12) MUTATED       18     11     20     20     11      2
  DEL PEAK 43(20Q13.12) WILD-TYPE     53     28    125    110     85     27
D72V10, multiclass
        clus
vv       DEL PEAK 43(20Q13.12) MUTATED DEL PEAK 43(20Q13.12) WILD-TYPE
  CLUS_1                            18                              53
  CLUS_2                            11                              28
  CLUS_3                            20                             125
  CLUS_4                            20                             110
  CLUS_5                            11                              85
  CLUS_6                             2                              27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(20Q13.12) MUTATED       10     15     19      2     12      6
  DEL PEAK 43(20Q13.12) WILD-TYPE     49     75     76     41     58     71
D72V11, multiclass
        clus
vv       DEL PEAK 43(20Q13.12) MUTATED DEL PEAK 43(20Q13.12) WILD-TYPE
  CLUS_1                            10                              49
  CLUS_2                            15                              75
  CLUS_3                            19                              76
  CLUS_4                             2                              41
  CLUS_5                            12                              58
  CLUS_6                             6                              71
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20Q13.12) MUTATED       22     30     12
  DEL PEAK 43(20Q13.12) WILD-TYPE     82    208     80
D72V12, multiclass
        clus
vv       DEL PEAK 43(20Q13.12) MUTATED DEL PEAK 43(20Q13.12) WILD-TYPE
  CLUS_1                            22                              82
  CLUS_2                            30                             208
  CLUS_3                            12                              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 44(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(21Q11.2) MUTATED        2      4      4
  DEL PEAK 44(21Q11.2) WILD-TYPE     13      6      3
D73V1, multiclass
        clus
vv       DEL PEAK 44(21Q11.2) MUTATED DEL PEAK 44(21Q11.2) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                            4                              6
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(21Q11.2) MUTATED        2      4      4
  DEL PEAK 44(21Q11.2) WILD-TYPE     12      7      3
D73V2, multiclass
        clus
vv       DEL PEAK 44(21Q11.2) MUTATED DEL PEAK 44(21Q11.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              7
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(21Q11.2) MUTATED       41     81     18     39
  DEL PEAK 44(21Q11.2) WILD-TYPE    131     57    114     35
D73V3, multiclass
        clus
vv       DEL PEAK 44(21Q11.2) MUTATED DEL PEAK 44(21Q11.2) WILD-TYPE
  CLUS_1                           41                            131
  CLUS_2                           81                             57
  CLUS_3                           18                            114
  CLUS_4                           39                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(21Q11.2) MUTATED       65     61     26
  DEL PEAK 44(21Q11.2) WILD-TYPE     91    109    103
D73V4, multiclass
        clus
vv       DEL PEAK 44(21Q11.2) MUTATED DEL PEAK 44(21Q11.2) WILD-TYPE
  CLUS_1                           65                             91
  CLUS_2                           61                            109
  CLUS_3                           26                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(21Q11.2) MUTATED       21      5     21     38     38
  DEL PEAK 44(21Q11.2) WILD-TYPE     70     17     45     37     71
D73V5, multiclass
        clus
vv       DEL PEAK 44(21Q11.2) MUTATED DEL PEAK 44(21Q11.2) WILD-TYPE
  CLUS_1                           21                             70
  CLUS_2                            5                             17
  CLUS_3                           21                             45
  CLUS_4                           38                             37
  CLUS_5                           38                             71
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(21Q11.2) MUTATED       46     54     23
  DEL PEAK 44(21Q11.2) WILD-TYPE    121     79     40
D73V6, multiclass
        clus
vv       DEL PEAK 44(21Q11.2) MUTATED DEL PEAK 44(21Q11.2) WILD-TYPE
  CLUS_1                           46                            121
  CLUS_2                           54                             79
  CLUS_3                           23                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(21Q11.2) MUTATED       41     14     42     65     14
  DEL PEAK 44(21Q11.2) WILD-TYPE     89    105     48     50     44
D73V7, multiclass
        clus
vv       DEL PEAK 44(21Q11.2) MUTATED DEL PEAK 44(21Q11.2) WILD-TYPE
  CLUS_1                           41                             89
  CLUS_2                           14                            105
  CLUS_3                           42                             48
  CLUS_4                           65                             50
  CLUS_5                           14                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(21Q11.2) MUTATED       10     38     41     12     36     22
  DEL PEAK 44(21Q11.2) WILD-TYPE     68     72     56     36     17     27
                                vv
clus                             CLUS_7
  DEL PEAK 44(21Q11.2) MUTATED       17
  DEL PEAK 44(21Q11.2) WILD-TYPE     60
D73V8, multiclass
        clus
vv       DEL PEAK 44(21Q11.2) MUTATED DEL PEAK 44(21Q11.2) WILD-TYPE
  CLUS_1                           10                             68
  CLUS_2                           38                             72
  CLUS_3                           41                             56
  CLUS_4                           12                             36
  CLUS_5                           36                             17
  CLUS_6                           22                             27
  CLUS_7                           17                             60
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(21Q11.2) MUTATED       40    104     31
  DEL PEAK 44(21Q11.2) WILD-TYPE    146    117     72
D73V9, multiclass
        clus
vv       DEL PEAK 44(21Q11.2) MUTATED DEL PEAK 44(21Q11.2) WILD-TYPE
  CLUS_1                           40                            146
  CLUS_2                          104                            117
  CLUS_3                           31                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(21Q11.2) MUTATED       17     17     52     30     52      7
  DEL PEAK 44(21Q11.2) WILD-TYPE     54     22     93    100     44     22
D73V10, multiclass
        clus
vv       DEL PEAK 44(21Q11.2) MUTATED DEL PEAK 44(21Q11.2) WILD-TYPE
  CLUS_1                           17                             54
  CLUS_2                           17                             22
  CLUS_3                           52                             93
  CLUS_4                           30                            100
  CLUS_5                           52                             44
  CLUS_6                            7                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(21Q11.2) MUTATED        5     45     41      9     19     28
  DEL PEAK 44(21Q11.2) WILD-TYPE     54     45     54     34     51     49
D73V11, multiclass
        clus
vv       DEL PEAK 44(21Q11.2) MUTATED DEL PEAK 44(21Q11.2) WILD-TYPE
  CLUS_1                            5                             54
  CLUS_2                           45                             45
  CLUS_3                           41                             54
  CLUS_4                            9                             34
  CLUS_5                           19                             51
  CLUS_6                           28                             49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(21Q11.2) MUTATED       16    108     23
  DEL PEAK 44(21Q11.2) WILD-TYPE     88    130     69
D73V12, multiclass
        clus
vv       DEL PEAK 44(21Q11.2) MUTATED DEL PEAK 44(21Q11.2) WILD-TYPE
  CLUS_1                           16                             88
  CLUS_2                          108                            130
  CLUS_3                           23                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 45(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(22Q13.32) MUTATED        5      6      4
  DEL PEAK 45(22Q13.32) WILD-TYPE     10      4      3
D74V1, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                             5                              10
  CLUS_2                             6                               4
  CLUS_3                             4                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(22Q13.32) MUTATED        4      7      4
  DEL PEAK 45(22Q13.32) WILD-TYPE     10      4      3
D74V2, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             7                               4
  CLUS_3                             4                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(22Q13.32) MUTATED       89     82     28     51
  DEL PEAK 45(22Q13.32) WILD-TYPE     83     56    104     23
D74V3, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            89                              83
  CLUS_2                            82                              56
  CLUS_3                            28                             104
  CLUS_4                            51                              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(22Q13.32) MUTATED       94     95     31
  DEL PEAK 45(22Q13.32) WILD-TYPE     62     75     98
D74V4, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            94                              62
  CLUS_2                            95                              75
  CLUS_3                            31                              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(22Q13.32) MUTATED       45      7     24     48     53
  DEL PEAK 45(22Q13.32) WILD-TYPE     46     15     42     27     56
D74V5, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            45                              46
  CLUS_2                             7                              15
  CLUS_3                            24                              42
  CLUS_4                            48                              27
  CLUS_5                            53                              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(22Q13.32) MUTATED       64     81     32
  DEL PEAK 45(22Q13.32) WILD-TYPE    103     52     31
D74V6, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            64                             103
  CLUS_2                            81                              52
  CLUS_3                            32                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(22Q13.32) MUTATED       77     34     43     79     14
  DEL PEAK 45(22Q13.32) WILD-TYPE     53     85     47     36     44
D74V7, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            77                              53
  CLUS_2                            34                              85
  CLUS_3                            43                              47
  CLUS_4                            79                              36
  CLUS_5                            14                              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(22Q13.32) MUTATED       26     66     53     15     41     28
  DEL PEAK 45(22Q13.32) WILD-TYPE     52     44     44     33     12     21
                                 vv
clus                              CLUS_7
  DEL PEAK 45(22Q13.32) MUTATED       18
  DEL PEAK 45(22Q13.32) WILD-TYPE     59
D74V8, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            26                              52
  CLUS_2                            66                              44
  CLUS_3                            53                              44
  CLUS_4                            15                              33
  CLUS_5                            41                              12
  CLUS_6                            28                              21
  CLUS_7                            18                              59
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(22Q13.32) MUTATED       65    135     46
  DEL PEAK 45(22Q13.32) WILD-TYPE    121     86     57
D74V9, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            65                             121
  CLUS_2                           135                              86
  CLUS_3                            46                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(22Q13.32) MUTATED       23     25     90     41     58      9
  DEL PEAK 45(22Q13.32) WILD-TYPE     48     14     55     89     38     20
D74V10, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            23                              48
  CLUS_2                            25                              14
  CLUS_3                            90                              55
  CLUS_4                            41                              89
  CLUS_5                            58                              38
  CLUS_6                             9                              20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(22Q13.32) MUTATED       18     60     50     20     29     33
  DEL PEAK 45(22Q13.32) WILD-TYPE     41     30     45     23     41     44
D74V11, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            18                              41
  CLUS_2                            60                              30
  CLUS_3                            50                              45
  CLUS_4                            20                              23
  CLUS_5                            29                              41
  CLUS_6                            33                              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(22Q13.32) MUTATED       33    136     41
  DEL PEAK 45(22Q13.32) WILD-TYPE     71    102     51
D74V12, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            33                              71
  CLUS_2                           136                             102
  CLUS_3                            41                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = DEL PEAK 46(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED        5      4      3
  DEL PEAK 46(XP22.2) WILD-TYPE     10      6      4
D75V1, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                           5                            10
  CLUS_2                           4                             6
  CLUS_3                           3                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED        5      4      3
  DEL PEAK 46(XP22.2) WILD-TYPE      9      7      4
D75V2, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           4                             7
  CLUS_3                           3                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(XP22.2) MUTATED       68     37     18     22
  DEL PEAK 46(XP22.2) WILD-TYPE    104    101    114     52
D75V3, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          68                           104
  CLUS_2                          37                           101
  CLUS_3                          18                           114
  CLUS_4                          22                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       43     58     25
  DEL PEAK 46(XP22.2) WILD-TYPE    113    112    104
D75V4, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          43                           113
  CLUS_2                          58                           112
  CLUS_3                          25                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(XP22.2) MUTATED       34      5     10     25     27
  DEL PEAK 46(XP22.2) WILD-TYPE     57     17     56     50     82
D75V5, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          34                            57
  CLUS_2                           5                            17
  CLUS_3                          10                            56
  CLUS_4                          25                            50
  CLUS_5                          27                            82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       40     46     15
  DEL PEAK 46(XP22.2) WILD-TYPE    127     87     48
D75V6, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          40                           127
  CLUS_2                          46                            87
  CLUS_3                          15                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(XP22.2) MUTATED       58     31     19     27      9
  DEL PEAK 46(XP22.2) WILD-TYPE     72     88     71     88     49
D75V7, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          58                            72
  CLUS_2                          31                            88
  CLUS_3                          19                            71
  CLUS_4                          27                            88
  CLUS_5                           9                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(XP22.2) MUTATED       23     49     33      9      8      8
  DEL PEAK 46(XP22.2) WILD-TYPE     55     61     64     39     45     41
                               vv
clus                            CLUS_7
  DEL PEAK 46(XP22.2) MUTATED       14
  DEL PEAK 46(XP22.2) WILD-TYPE     63
D75V8, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          23                            55
  CLUS_2                          49                            61
  CLUS_3                          33                            64
  CLUS_4                           9                            39
  CLUS_5                           8                            45
  CLUS_6                           8                            41
  CLUS_7                          14                            63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       47     65     31
  DEL PEAK 46(XP22.2) WILD-TYPE    139    156     72
D75V9, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          47                           139
  CLUS_2                          65                           156
  CLUS_3                          31                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(XP22.2) MUTATED       17      8     49     33     29      7
  DEL PEAK 46(XP22.2) WILD-TYPE     54     31     96     97     67     22
D75V10, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          17                            54
  CLUS_2                           8                            31
  CLUS_3                          49                            96
  CLUS_4                          33                            97
  CLUS_5                          29                            67
  CLUS_6                           7                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(XP22.2) MUTATED       13     29     32      8     19     22
  DEL PEAK 46(XP22.2) WILD-TYPE     46     61     63     35     51     55
D75V11, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          13                            46
  CLUS_2                          29                            61
  CLUS_3                          32                            63
  CLUS_4                           8                            35
  CLUS_5                          19                            51
  CLUS_6                          22                            55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       21     70     32
  DEL PEAK 46(XP22.2) WILD-TYPE     83    168     60
D75V12, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          21                            83
  CLUS_2                          70                           168
  CLUS_3                          32                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
