[1] "ofn"        "-oTMESO-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/MESO-TP/22541489/MESO-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/MESO-TP/22533663/transformed.cor.cli.txt"

nPatients in clinical file=87, in cluster file=87, common to both=87
[1] 21 87
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            33                             54 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            33                             54 
[1] "DEL PEAK  2(1P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                           37                            50 
  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                           37                            50 
[1] "DEL PEAK  3(2Q35) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE 
                         17                          70 
  DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE 
                         17                          70 
[1] "DEL PEAK  4(3P21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE 
                           48                            39 
  DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE 
                           48                            39 
[1] "DEL PEAK  5(4Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE 
                         38                          49 
  DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE 
                         38                          49 
[1] "DEL PEAK  6(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           41                            46 
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           41                            46 
[1] "DEL PEAK  7(5Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE 
                           17                            70 
  DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE 
                           17                            70 
[1] "DEL PEAK  8(6Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE 
                           41                            46 
  DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE 
                           41                            46 
[1] "DEL PEAK  9(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                         36                          51 
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                         36                          51 
[1] "DEL PEAK 10(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                           18                            69 
  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                           18                            69 
[1] "DEL PEAK 11(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           51                            36 
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           51                            36 
[1] "DEL PEAK 12(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                            28                             59 
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                            28                             59 
[1] "DEL PEAK 13(10Q25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE 
                            31                             56 
  DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE 
                            31                             56 
[1] "DEL PEAK 14(11Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE 
                            18                             69 
  DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE 
                            18                             69 
[1] "DEL PEAK 15(12P13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE 
                             11                              76 
  DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE 
                             11                              76 
[1] "DEL PEAK 16(13Q14.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE 
                             44                              43 
  DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE 
                             44                              43 
[1] "DEL PEAK 17(14Q32.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                             39                              48 
  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                             39                              48 
[1] "DEL PEAK 18(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE 
                            28                             59 
  DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE 
                            28                             59 
[1] "DEL PEAK 19(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE 
                             6                             81 
  DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE 
                             6                             81 
[1] "DEL PEAK 20(16Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE 
                            22                             65 
  DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE 
                            22                             65 
[1] "DEL PEAK 21(22Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE 
                            68                             19 
  DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE 
                            68                             19 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 87 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 87 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        1     14     10      8
  DEL PEAK  1(1P36.31) WILD-TYPE     26      7      6     15
D1V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            1                             26
  CLUS_2                           14                              7
  CLUS_3                           10                              6
  CLUS_4                            8                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED        1      9     11      8      4
  DEL PEAK  1(1P36.31) WILD-TYPE     15     10      7     17      5
D1V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            9                             10
  CLUS_3                           11                              7
  CLUS_4                            8                             17
  CLUS_5                            4                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        1     12      8      5
  DEL PEAK  1(1P36.31) WILD-TYPE      7     12     16      2
D1V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                           12                             12
  CLUS_3                            8                             16
  CLUS_4                            5                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED        3      4      5      2      4      8
  DEL PEAK  1(1P36.31) WILD-TYPE      6      7      5     10      5      4
D1V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            4                              7
  CLUS_3                            5                              5
  CLUS_4                            2                             10
  CLUS_5                            4                              5
  CLUS_6                            8                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        7     11      8      7
  DEL PEAK  1(1P36.31) WILD-TYPE     19     10     11     14
D1V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            7                             19
  CLUS_2                           11                             10
  CLUS_3                            8                             11
  CLUS_4                            7                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED        4      8     11      5      5
  DEL PEAK  1(1P36.31) WILD-TYPE     19      4     10     10     11
D1V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                            8                              4
  CLUS_3                           11                             10
  CLUS_4                            5                             10
  CLUS_5                            5                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       11      7      8      7
  DEL PEAK  1(1P36.31) WILD-TYPE     10     18      8     18
D1V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           11                             10
  CLUS_2                            7                             18
  CLUS_3                            8                              8
  CLUS_4                            7                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED        9     12      5      6      1
  DEL PEAK  1(1P36.31) WILD-TYPE     20     13      1      7     13
D1V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            9                             20
  CLUS_2                           12                             13
  CLUS_3                            5                              1
  CLUS_4                            6                              7
  CLUS_5                            1                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       15     10      8
  DEL PEAK  1(1P36.31) WILD-TYPE     24     13     15
D1V9, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           15                             24
  CLUS_2                           10                             13
  CLUS_3                            8                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        2     10      7     14
  DEL PEAK  1(1P36.31) WILD-TYPE     15      8      9     20
D1V10, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            2                             15
  CLUS_2                           10                              8
  CLUS_3                            7                              9
  CLUS_4                           14                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = DEL PEAK  2(1P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P21.3) MUTATED        6     11     10     10
  DEL PEAK  2(1P21.3) WILD-TYPE     21     10      6     13
D2V1, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           6                            21
  CLUS_2                          11                            10
  CLUS_3                          10                             6
  CLUS_4                          10                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P21.3) MUTATED        6     10     11      6      4
  DEL PEAK  2(1P21.3) WILD-TYPE     10      9      7     19      5
D2V2, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           6                            10
  CLUS_2                          10                             9
  CLUS_3                          11                             7
  CLUS_4                           6                            19
  CLUS_5                           4                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P21.3) MUTATED        1     14     15      1
  DEL PEAK  2(1P21.3) WILD-TYPE      7     10      9      6
D2V3, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                          14                            10
  CLUS_3                          15                             9
  CLUS_4                           1                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P21.3) MUTATED        1      6      7      8      3      6
  DEL PEAK  2(1P21.3) WILD-TYPE      8      5      3      4      6      6
D2V4, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           6                             5
  CLUS_3                           7                             3
  CLUS_4                           8                             4
  CLUS_5                           3                             6
  CLUS_6                           6                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P21.3) MUTATED        5     11      5     16
  DEL PEAK  2(1P21.3) WILD-TYPE     21     10     14      5
D2V5, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           5                            21
  CLUS_2                          11                            10
  CLUS_3                           5                            14
  CLUS_4                          16                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P21.3) MUTATED        5      8     10      3     11
  DEL PEAK  2(1P21.3) WILD-TYPE     18      4     11     12      5
D2V6, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                           8                             4
  CLUS_3                          10                            11
  CLUS_4                           3                            12
  CLUS_5                          11                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P21.3) MUTATED       13     11      5      8
  DEL PEAK  2(1P21.3) WILD-TYPE      8     14     11     17
D2V7, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                          13                             8
  CLUS_2                          11                            14
  CLUS_3                           5                            11
  CLUS_4                           8                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P21.3) MUTATED       11      9      3      9      5
  DEL PEAK  2(1P21.3) WILD-TYPE     18     16      3      4      9
D2V8, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                          11                            18
  CLUS_2                           9                            16
  CLUS_3                           3                             3
  CLUS_4                           9                             4
  CLUS_5                           5                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P21.3) MUTATED       15     10     12
  DEL PEAK  2(1P21.3) WILD-TYPE     24     13     11
D2V9, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                          15                            24
  CLUS_2                          10                            13
  CLUS_3                          12                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P21.3) MUTATED        5      8      5     19
  DEL PEAK  2(1P21.3) WILD-TYPE     12     10     11     15
D2V10, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           5                            12
  CLUS_2                           8                            10
  CLUS_3                           5                            11
  CLUS_4                          19                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = DEL PEAK  3(2Q35) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q35) MUTATED        0      7      5      5
  DEL PEAK  3(2Q35) WILD-TYPE     27     14     11     18
D3V1, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         0                          27
  CLUS_2                         7                          14
  CLUS_3                         5                          11
  CLUS_4                         5                          18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q35) MUTATED        1      8      4      3      1
  DEL PEAK  3(2Q35) WILD-TYPE     15     11     14     22      8
D3V2, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         1                          15
  CLUS_2                         8                          11
  CLUS_3                         4                          14
  CLUS_4                         3                          22
  CLUS_5                         1                           8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q35) MUTATED        1      7      5      2
  DEL PEAK  3(2Q35) WILD-TYPE      7     17     19      5
D3V3, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         1                           7
  CLUS_2                         7                          17
  CLUS_3                         5                          19
  CLUS_4                         2                           5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q35) MUTATED        0      2      2      3      2      6
  DEL PEAK  3(2Q35) WILD-TYPE      9      9      8      9      7      6
D3V4, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         0                           9
  CLUS_2                         2                           9
  CLUS_3                         2                           8
  CLUS_4                         3                           9
  CLUS_5                         2                           7
  CLUS_6                         6                           6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q35) MUTATED        3      6      4      4
  DEL PEAK  3(2Q35) WILD-TYPE     23     15     15     17
D3V5, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         3                          23
  CLUS_2                         6                          15
  CLUS_3                         4                          15
  CLUS_4                         4                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q35) MUTATED        1      6      6      2      2
  DEL PEAK  3(2Q35) WILD-TYPE     22      6     15     13     14
D3V6, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         1                          22
  CLUS_2                         6                           6
  CLUS_3                         6                          15
  CLUS_4                         2                          13
  CLUS_5                         2                          14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q35) MUTATED        6      6      3      2
  DEL PEAK  3(2Q35) WILD-TYPE     15     19     13     23
D3V7, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         6                          15
  CLUS_2                         6                          19
  CLUS_3                         3                          13
  CLUS_4                         2                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q35) MUTATED        5      6      3      3      0
  DEL PEAK  3(2Q35) WILD-TYPE     24     19      3     10     14
D3V8, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         5                          24
  CLUS_2                         6                          19
  CLUS_3                         3                           3
  CLUS_4                         3                          10
  CLUS_5                         0                          14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q35) MUTATED        8      4      4
  DEL PEAK  3(2Q35) WILD-TYPE     31     19     19
D3V9, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         8                          31
  CLUS_2                         4                          19
  CLUS_3                         4                          19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q35) MUTATED        1      4      5      6
  DEL PEAK  3(2Q35) WILD-TYPE     16     14     11     28
D3V10, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         1                          16
  CLUS_2                         4                          14
  CLUS_3                         5                          11
  CLUS_4                         6                          28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = DEL PEAK  4(3P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P21.1) MUTATED       19     15     10      4
  DEL PEAK  4(3P21.1) WILD-TYPE      8      6      6     19
D4V1, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          19                             8
  CLUS_2                          15                             6
  CLUS_3                          10                             6
  CLUS_4                           4                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P21.1) MUTATED       13      5     16     12      2
  DEL PEAK  4(3P21.1) WILD-TYPE      3     14      2     13      7
D4V2, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          13                             3
  CLUS_2                           5                            14
  CLUS_3                          16                             2
  CLUS_4                          12                            13
  CLUS_5                           2                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P21.1) MUTATED        4     16     11      4
  DEL PEAK  4(3P21.1) WILD-TYPE      4      8     13      3
D4V3, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                           4                             4
  CLUS_2                          16                             8
  CLUS_3                          11                            13
  CLUS_4                           4                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.1) MUTATED        5      7      5      4      6      8
  DEL PEAK  4(3P21.1) WILD-TYPE      4      4      5      8      3      4
D4V4, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                           5                             4
  CLUS_2                           7                             4
  CLUS_3                           5                             5
  CLUS_4                           4                             8
  CLUS_5                           6                             3
  CLUS_6                           8                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P21.1) MUTATED       21      4     10     13
  DEL PEAK  4(3P21.1) WILD-TYPE      5     17      9      8
D4V5, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          21                             5
  CLUS_2                           4                            17
  CLUS_3                          10                             9
  CLUS_4                          13                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P21.1) MUTATED       17     12      3      8      8
  DEL PEAK  4(3P21.1) WILD-TYPE      6      0     18      7      8
D4V6, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          17                             6
  CLUS_2                          12                             0
  CLUS_3                           3                            18
  CLUS_4                           8                             7
  CLUS_5                           8                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P21.1) MUTATED       10     19      5     14
  DEL PEAK  4(3P21.1) WILD-TYPE     11      6     11     11
D4V7, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          10                            11
  CLUS_2                          19                             6
  CLUS_3                           5                            11
  CLUS_4                          14                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P21.1) MUTATED       16      8      3      9     12
  DEL PEAK  4(3P21.1) WILD-TYPE     13     17      3      4      2
D4V8, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          16                            13
  CLUS_2                           8                            17
  CLUS_3                           3                             3
  CLUS_4                           9                             4
  CLUS_5                          12                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.1) MUTATED       22     12     13
  DEL PEAK  4(3P21.1) WILD-TYPE     17     11     10
D4V9, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          22                            17
  CLUS_2                          12                            11
  CLUS_3                          13                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P21.1) MUTATED       14      4      8     21
  DEL PEAK  4(3P21.1) WILD-TYPE      3     14      8     13
D4V10, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          14                             3
  CLUS_2                           4                            14
  CLUS_3                           8                             8
  CLUS_4                          21                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = DEL PEAK  5(4Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q26) MUTATED        1     19      8     10
  DEL PEAK  5(4Q26) WILD-TYPE     26      2      8     13
D5V1, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         1                          26
  CLUS_2                        19                           2
  CLUS_3                         8                           8
  CLUS_4                        10                          13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q26) MUTATED        3     12      9     10      4
  DEL PEAK  5(4Q26) WILD-TYPE     13      7      9     15      5
D5V2, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         3                          13
  CLUS_2                        12                           7
  CLUS_3                         9                           9
  CLUS_4                        10                          15
  CLUS_5                         4                           5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q26) MUTATED        1     13     12      4
  DEL PEAK  5(4Q26) WILD-TYPE      7     11     12      3
D5V3, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         1                           7
  CLUS_2                        13                          11
  CLUS_3                        12                          12
  CLUS_4                         4                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4Q26) MUTATED        1      5      6      5      4      9
  DEL PEAK  5(4Q26) WILD-TYPE      8      6      4      7      5      3
D5V4, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         5                           6
  CLUS_3                         6                           4
  CLUS_4                         5                           7
  CLUS_5                         4                           5
  CLUS_6                         9                           3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q26) MUTATED        4     11      9     14
  DEL PEAK  5(4Q26) WILD-TYPE     22     10     10      7
D5V5, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         4                          22
  CLUS_2                        11                          10
  CLUS_3                         9                          10
  CLUS_4                        14                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q26) MUTATED        2      9     11      6     10
  DEL PEAK  5(4Q26) WILD-TYPE     21      3     10      9      6
D5V6, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         2                          21
  CLUS_2                         9                           3
  CLUS_3                        11                          10
  CLUS_4                         6                           9
  CLUS_5                        10                           6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q26) MUTATED       14     12      7      5
  DEL PEAK  5(4Q26) WILD-TYPE      7     13      9     20
D5V7, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                        14                           7
  CLUS_2                        12                          13
  CLUS_3                         7                           9
  CLUS_4                         5                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q26) MUTATED       14     12      5      5      2
  DEL PEAK  5(4Q26) WILD-TYPE     15     13      1      8     12
D5V8, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                        14                          15
  CLUS_2                        12                          13
  CLUS_3                         5                           1
  CLUS_4                         5                           8
  CLUS_5                         2                          12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q26) MUTATED       15     12      9
  DEL PEAK  5(4Q26) WILD-TYPE     24     11     14
D5V9, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                        15                          24
  CLUS_2                        12                          11
  CLUS_3                         9                          14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q26) MUTATED        3      9      6     18
  DEL PEAK  5(4Q26) WILD-TYPE     14      9     10     16
D5V10, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         3                          14
  CLUS_2                         9                           9
  CLUS_3                         6                          10
  CLUS_4                        18                          16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = DEL PEAK  6(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        0     19     10     12
  DEL PEAK  6(4Q34.3) WILD-TYPE     27      2      6     11
D6V1, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           0                            27
  CLUS_2                          19                             2
  CLUS_3                          10                             6
  CLUS_4                          12                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q34.3) MUTATED        3     14     12      8      4
  DEL PEAK  6(4Q34.3) WILD-TYPE     13      5      6     17      5
D6V2, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           3                            13
  CLUS_2                          14                             5
  CLUS_3                          12                             6
  CLUS_4                           8                            17
  CLUS_5                           4                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        1     14     12      4
  DEL PEAK  6(4Q34.3) WILD-TYPE      7     10     12      3
D6V3, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                          14                            10
  CLUS_3                          12                            12
  CLUS_4                           4                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q34.3) MUTATED        2      6      6      5      5      7
  DEL PEAK  6(4Q34.3) WILD-TYPE      7      5      4      7      4      5
D6V4, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           6                             5
  CLUS_3                           6                             4
  CLUS_4                           5                             7
  CLUS_5                           5                             4
  CLUS_6                           7                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        7     13      8     13
  DEL PEAK  6(4Q34.3) WILD-TYPE     19      8     11      8
D6V5, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           7                            19
  CLUS_2                          13                             8
  CLUS_3                           8                            11
  CLUS_4                          13                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q34.3) MUTATED        3      9     13      6     10
  DEL PEAK  6(4Q34.3) WILD-TYPE     20      3      8      9      6
D6V6, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           3                            20
  CLUS_2                           9                             3
  CLUS_3                          13                             8
  CLUS_4                           6                             9
  CLUS_5                          10                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       14     12      8      7
  DEL PEAK  6(4Q34.3) WILD-TYPE      7     13      8     18
D6V7, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          14                             7
  CLUS_2                          12                            13
  CLUS_3                           8                             8
  CLUS_4                           7                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q34.3) MUTATED       14     14      4      6      3
  DEL PEAK  6(4Q34.3) WILD-TYPE     15     11      2      7     11
D6V8, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          14                            15
  CLUS_2                          14                            11
  CLUS_3                           4                             2
  CLUS_4                           6                             7
  CLUS_5                           3                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       19     11     10
  DEL PEAK  6(4Q34.3) WILD-TYPE     20     12     13
D6V9, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          19                            20
  CLUS_2                          11                            12
  CLUS_3                          10                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        4     12      5     19
  DEL PEAK  6(4Q34.3) WILD-TYPE     13      6     11     15
D6V10, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           4                            13
  CLUS_2                          12                             6
  CLUS_3                           5                            11
  CLUS_4                          19                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = DEL PEAK  7(5Q23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q23.2) MUTATED        2      6      7      2
  DEL PEAK  7(5Q23.2) WILD-TYPE     25     15      9     21
D7V1, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           2                            25
  CLUS_2                           6                            15
  CLUS_3                           7                             9
  CLUS_4                           2                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q23.2) MUTATED        3      5      4      3      2
  DEL PEAK  7(5Q23.2) WILD-TYPE     13     14     14     22      7
D7V2, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           3                            13
  CLUS_2                           5                            14
  CLUS_3                           4                            14
  CLUS_4                           3                            22
  CLUS_5                           2                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q23.2) MUTATED        1      8      5      2
  DEL PEAK  7(5Q23.2) WILD-TYPE      7     16     19      5
D7V3, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           8                            16
  CLUS_3                           5                            19
  CLUS_4                           2                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q23.2) MUTATED        0      4      2      2      3      5
  DEL PEAK  7(5Q23.2) WILD-TYPE      9      7      8     10      6      7
D7V4, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           0                             9
  CLUS_2                           4                             7
  CLUS_3                           2                             8
  CLUS_4                           2                            10
  CLUS_5                           3                             6
  CLUS_6                           5                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q23.2) MUTATED        4      4      3      6
  DEL PEAK  7(5Q23.2) WILD-TYPE     22     17     16     15
D7V5, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           4                            22
  CLUS_2                           4                            17
  CLUS_3                           3                            16
  CLUS_4                           6                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q23.2) MUTATED        3      7      3      2      2
  DEL PEAK  7(5Q23.2) WILD-TYPE     20      5     18     13     14
D7V6, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           3                            20
  CLUS_2                           7                             5
  CLUS_3                           3                            18
  CLUS_4                           2                            13
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q23.2) MUTATED        7      5      1      4
  DEL PEAK  7(5Q23.2) WILD-TYPE     14     20     15     21
D7V7, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           7                            14
  CLUS_2                           5                            20
  CLUS_3                           1                            15
  CLUS_4                           4                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q23.2) MUTATED        7      5      0      4      1
  DEL PEAK  7(5Q23.2) WILD-TYPE     22     20      6      9     13
D7V8, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           7                            22
  CLUS_2                           5                            20
  CLUS_3                           0                             6
  CLUS_4                           4                             9
  CLUS_5                           1                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q23.2) MUTATED        8      4      4
  DEL PEAK  7(5Q23.2) WILD-TYPE     31     19     19
D7V9, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           8                            31
  CLUS_2                           4                            19
  CLUS_3                           4                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q23.2) MUTATED        3      3      2      8
  DEL PEAK  7(5Q23.2) WILD-TYPE     14     15     14     26
D7V10, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           3                            14
  CLUS_2                           3                            15
  CLUS_3                           2                            14
  CLUS_4                           8                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = DEL PEAK  8(6Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q22.1) MUTATED       14     17      7      3
  DEL PEAK  8(6Q22.1) WILD-TYPE     13      4      9     20
D8V1, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          14                            13
  CLUS_2                          17                             4
  CLUS_3                           7                             9
  CLUS_4                           3                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(6Q22.1) MUTATED       10     10      8     10      3
  DEL PEAK  8(6Q22.1) WILD-TYPE      6      9     10     15      6
D8V2, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          10                             6
  CLUS_2                          10                             9
  CLUS_3                           8                            10
  CLUS_4                          10                            15
  CLUS_5                           3                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q22.1) MUTATED        2     10     11      3
  DEL PEAK  8(6Q22.1) WILD-TYPE      6     14     13      4
D8V3, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                          10                            14
  CLUS_3                          11                            13
  CLUS_4                           3                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(6Q22.1) MUTATED        4      2      5      5      4      6
  DEL PEAK  8(6Q22.1) WILD-TYPE      5      9      5      7      5      6
D8V4, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                           2                             9
  CLUS_3                           5                             5
  CLUS_4                           5                             7
  CLUS_5                           4                             5
  CLUS_6                           6                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q22.1) MUTATED       16     10      9      6
  DEL PEAK  8(6Q22.1) WILD-TYPE     10     11     10     15
D8V5, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          16                            10
  CLUS_2                          10                            11
  CLUS_3                           9                            10
  CLUS_4                           6                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(6Q22.1) MUTATED       14      6      9      7      5
  DEL PEAK  8(6Q22.1) WILD-TYPE      9      6     12      8     11
D8V6, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          14                             9
  CLUS_2                           6                             6
  CLUS_3                           9                            12
  CLUS_4                           7                             8
  CLUS_5                           5                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q22.1) MUTATED       14     11      5     11
  DEL PEAK  8(6Q22.1) WILD-TYPE      7     14     11     14
D8V7, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          14                             7
  CLUS_2                          11                            14
  CLUS_3                           5                            11
  CLUS_4                          11                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(6Q22.1) MUTATED       16     10      3      3      9
  DEL PEAK  8(6Q22.1) WILD-TYPE     13     15      3     10      5
D8V8, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          16                            13
  CLUS_2                          10                            15
  CLUS_3                           3                             3
  CLUS_4                           3                            10
  CLUS_5                           9                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6Q22.1) MUTATED       22      9      9
  DEL PEAK  8(6Q22.1) WILD-TYPE     17     14     14
D8V9, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          22                            17
  CLUS_2                           9                            14
  CLUS_3                           9                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q22.1) MUTATED       13      8      6     13
  DEL PEAK  8(6Q22.1) WILD-TYPE      4     10     10     21
D8V10, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          13                             4
  CLUS_2                           8                            10
  CLUS_3                           6                            10
  CLUS_4                          13                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DEL PEAK  9(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED       10     19      5      2
  DEL PEAK  9(6Q26) WILD-TYPE     17      2     11     21
D9V1, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        10                          17
  CLUS_2                        19                           2
  CLUS_3                         5                          11
  CLUS_4                         2                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6Q26) MUTATED        7      9      8      8      4
  DEL PEAK  9(6Q26) WILD-TYPE      9     10     10     17      5
D9V2, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         7                           9
  CLUS_2                         9                          10
  CLUS_3                         8                          10
  CLUS_4                         8                          17
  CLUS_5                         4                           5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED        2     12      9      1
  DEL PEAK  9(6Q26) WILD-TYPE      6     12     15      6
D9V3, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         2                           6
  CLUS_2                        12                          12
  CLUS_3                         9                          15
  CLUS_4                         1                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6Q26) MUTATED        3      2      4      4      7      4
  DEL PEAK  9(6Q26) WILD-TYPE      6      9      6      8      2      8
D9V4, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         3                           6
  CLUS_2                         2                           9
  CLUS_3                         4                           6
  CLUS_4                         4                           8
  CLUS_5                         7                           2
  CLUS_6                         4                           8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED       12     10      7      7
  DEL PEAK  9(6Q26) WILD-TYPE     14     11     12     14
D9V5, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        12                          14
  CLUS_2                        10                          11
  CLUS_3                         7                          12
  CLUS_4                         7                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6Q26) MUTATED       11      3     10      5      7
  DEL PEAK  9(6Q26) WILD-TYPE     12      9     11     10      9
D9V6, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        11                          12
  CLUS_2                         3                           9
  CLUS_3                        10                          11
  CLUS_4                         5                          10
  CLUS_5                         7                           9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED       13     10      3     10
  DEL PEAK  9(6Q26) WILD-TYPE      8     15     13     15
D9V7, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        13                           8
  CLUS_2                        10                          15
  CLUS_3                         3                          13
  CLUS_4                        10                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6Q26) MUTATED       12     10      3      3      8
  DEL PEAK  9(6Q26) WILD-TYPE     17     15      3     10      6
D9V8, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        12                          17
  CLUS_2                        10                          15
  CLUS_3                         3                           3
  CLUS_4                         3                          10
  CLUS_5                         8                           6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q26) MUTATED       20      8      8
  DEL PEAK  9(6Q26) WILD-TYPE     19     15     15
D9V9, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        20                          19
  CLUS_2                         8                          15
  CLUS_3                         8                          15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED       11      9      5     11
  DEL PEAK  9(6Q26) WILD-TYPE      6      9     11     23
D9V10, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        11                           6
  CLUS_2                         9                           9
  CLUS_3                         5                          11
  CLUS_4                        11                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK 10(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P23.2) MUTATED        4      3      4      7
  DEL PEAK 10(8P23.2) WILD-TYPE     23     18     12     16
D10V1, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           4                            23
  CLUS_2                           3                            18
  CLUS_3                           4                            12
  CLUS_4                           7                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(8P23.2) MUTATED        5      2      4      3      4
  DEL PEAK 10(8P23.2) WILD-TYPE     11     17     14     22      5
D10V2, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                           2                            17
  CLUS_3                           4                            14
  CLUS_4                           3                            22
  CLUS_5                           4                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P23.2) MUTATED        2      5      6      2
  DEL PEAK 10(8P23.2) WILD-TYPE      6     19     18      5
D10V3, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           5                            19
  CLUS_3                           6                            18
  CLUS_4                           2                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(8P23.2) MUTATED        1      2      3      3      2      4
  DEL PEAK 10(8P23.2) WILD-TYPE      8      9      7      9      7      8
D10V4, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           2                             9
  CLUS_3                           3                             7
  CLUS_4                           3                             9
  CLUS_5                           2                             7
  CLUS_6                           4                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P23.2) MUTATED        7      4      3      4
  DEL PEAK 10(8P23.2) WILD-TYPE     19     17     16     17
D10V5, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           7                            19
  CLUS_2                           4                            17
  CLUS_3                           3                            16
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(8P23.2) MUTATED        6      2      5      2      3
  DEL PEAK 10(8P23.2) WILD-TYPE     17     10     16     13     13
D10V6, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           6                            17
  CLUS_2                           2                            10
  CLUS_3                           5                            16
  CLUS_4                           2                            13
  CLUS_5                           3                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P23.2) MUTATED        8      3      2      5
  DEL PEAK 10(8P23.2) WILD-TYPE     13     22     14     20
D10V7, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           8                            13
  CLUS_2                           3                            22
  CLUS_3                           2                            14
  CLUS_4                           5                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(8P23.2) MUTATED        8      4      1      3      2
  DEL PEAK 10(8P23.2) WILD-TYPE     21     21      5     10     12
D10V8, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           8                            21
  CLUS_2                           4                            21
  CLUS_3                           1                             5
  CLUS_4                           3                            10
  CLUS_5                           2                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8P23.2) MUTATED        9      5      4
  DEL PEAK 10(8P23.2) WILD-TYPE     30     18     19
D10V9, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           9                            30
  CLUS_2                           5                            18
  CLUS_3                           4                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P23.2) MUTATED        5      4      2      7
  DEL PEAK 10(8P23.2) WILD-TYPE     12     14     14     27
D10V10, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           5                            12
  CLUS_2                           4                            14
  CLUS_3                           2                            14
  CLUS_4                           7                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK 11(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P21.3) MUTATED        5     20     15     11
  DEL PEAK 11(9P21.3) WILD-TYPE     22      1      1     12
D11V1, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           5                            22
  CLUS_2                          20                             1
  CLUS_3                          15                             1
  CLUS_4                          11                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(9P21.3) MUTATED        5     13     16     13      4
  DEL PEAK 11(9P21.3) WILD-TYPE     11      6      2     12      5
D11V2, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                          13                             6
  CLUS_3                          16                             2
  CLUS_4                          13                            12
  CLUS_5                           4                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P21.3) MUTATED        3     19     11      6
  DEL PEAK 11(9P21.3) WILD-TYPE      5      5     13      1
D11V3, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                          19                             5
  CLUS_3                          11                            13
  CLUS_4                           6                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(9P21.3) MUTATED        3      8      6      5      6     11
  DEL PEAK 11(9P21.3) WILD-TYPE      6      3      4      7      3      1
D11V4, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           8                             3
  CLUS_3                           6                             4
  CLUS_4                           5                             7
  CLUS_5                           6                             3
  CLUS_6                          11                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P21.3) MUTATED        9     14     12     16
  DEL PEAK 11(9P21.3) WILD-TYPE     17      7      7      5
D11V5, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           9                            17
  CLUS_2                          14                             7
  CLUS_3                          12                             7
  CLUS_4                          16                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(9P21.3) MUTATED        5     12     14      9     11
  DEL PEAK 11(9P21.3) WILD-TYPE     18      0      7      6      5
D11V6, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                          12                             0
  CLUS_3                          14                             7
  CLUS_4                           9                             6
  CLUS_5                          11                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P21.3) MUTATED       16     17      8     10
  DEL PEAK 11(9P21.3) WILD-TYPE      5      8      8     15
D11V7, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          16                             5
  CLUS_2                          17                             8
  CLUS_3                           8                             8
  CLUS_4                          10                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(9P21.3) MUTATED       19     15      5      8      4
  DEL PEAK 11(9P21.3) WILD-TYPE     10     10      1      5     10
D11V8, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          19                            10
  CLUS_2                          15                            10
  CLUS_3                           5                             1
  CLUS_4                           8                             5
  CLUS_5                           4                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(9P21.3) MUTATED       20     14     16
  DEL PEAK 11(9P21.3) WILD-TYPE     19      9      7
D11V9, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          20                            19
  CLUS_2                          14                             9
  CLUS_3                          16                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P21.3) MUTATED        4     12      9     25
  DEL PEAK 11(9P21.3) WILD-TYPE     13      6      7      9
D11V10, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           4                            13
  CLUS_2                          12                             6
  CLUS_3                           9                             7
  CLUS_4                          25                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK 12(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(10P15.3) MUTATED        2     12      9      5
  DEL PEAK 12(10P15.3) WILD-TYPE     25      9      7     18
D12V1, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                           12                              9
  CLUS_3                            9                              7
  CLUS_4                            5                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(10P15.3) MUTATED        1      9      9      7      2
  DEL PEAK 12(10P15.3) WILD-TYPE     15     10      9     18      7
D12V2, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            9                             10
  CLUS_3                            9                              9
  CLUS_4                            7                             18
  CLUS_5                            2                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(10P15.3) MUTATED        0     10      8      2
  DEL PEAK 12(10P15.3) WILD-TYPE      8     14     16      5
D12V3, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                           10                             14
  CLUS_3                            8                             16
  CLUS_4                            2                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(10P15.3) MUTATED        1      3      3      4      4      5
  DEL PEAK 12(10P15.3) WILD-TYPE      8      8      7      8      5      7
D12V4, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            3                              8
  CLUS_3                            3                              7
  CLUS_4                            4                              8
  CLUS_5                            4                              5
  CLUS_6                            5                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(10P15.3) MUTATED        3      8      7     10
  DEL PEAK 12(10P15.3) WILD-TYPE     23     13     12     11
D12V5, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            3                             23
  CLUS_2                            8                             13
  CLUS_3                            7                             12
  CLUS_4                           10                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(10P15.3) MUTATED        2      6      7      6      7
  DEL PEAK 12(10P15.3) WILD-TYPE     21      6     14      9      9
D12V6, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            2                             21
  CLUS_2                            6                              6
  CLUS_3                            7                             14
  CLUS_4                            6                              9
  CLUS_5                            7                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(10P15.3) MUTATED        9     12      2      5
  DEL PEAK 12(10P15.3) WILD-TYPE     12     13     14     20
D12V7, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            9                             12
  CLUS_2                           12                             13
  CLUS_3                            2                             14
  CLUS_4                            5                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(10P15.3) MUTATED       12      9      1      4      2
  DEL PEAK 12(10P15.3) WILD-TYPE     17     16      5      9     12
D12V8, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                           12                             17
  CLUS_2                            9                             16
  CLUS_3                            1                              5
  CLUS_4                            4                              9
  CLUS_5                            2                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(10P15.3) MUTATED       10      6     10
  DEL PEAK 12(10P15.3) WILD-TYPE     29     17     13
D12V9, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                           10                             29
  CLUS_2                            6                             17
  CLUS_3                           10                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(10P15.3) MUTATED        3      7      2     14
  DEL PEAK 12(10P15.3) WILD-TYPE     14     11     14     20
D12V10, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            3                             14
  CLUS_2                            7                             11
  CLUS_3                            2                             14
  CLUS_4                           14                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK 13(10Q25.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q25.2) MUTATED        9      6      9      7
  DEL PEAK 13(10Q25.2) WILD-TYPE     18     15      7     16
D13V1, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            9                             18
  CLUS_2                            6                             15
  CLUS_3                            9                              7
  CLUS_4                            7                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(10Q25.2) MUTATED        4     10      9      6      2
  DEL PEAK 13(10Q25.2) WILD-TYPE     12      9      9     19      7
D13V2, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                           10                              9
  CLUS_3                            9                              9
  CLUS_4                            6                             19
  CLUS_5                            2                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q25.2) MUTATED        0     10      8      2
  DEL PEAK 13(10Q25.2) WILD-TYPE      8     14     16      5
D13V3, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                           10                             14
  CLUS_3                            8                             16
  CLUS_4                            2                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(10Q25.2) MUTATED        1      4      3      4      4      4
  DEL PEAK 13(10Q25.2) WILD-TYPE      8      7      7      8      5      8
D13V4, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            4                              7
  CLUS_3                            3                              7
  CLUS_4                            4                              8
  CLUS_5                            4                              5
  CLUS_6                            4                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q25.2) MUTATED        7     10      5      9
  DEL PEAK 13(10Q25.2) WILD-TYPE     19     11     14     12
D13V5, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            7                             19
  CLUS_2                           10                             11
  CLUS_3                            5                             14
  CLUS_4                            9                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(10Q25.2) MUTATED        6      4      9      4      8
  DEL PEAK 13(10Q25.2) WILD-TYPE     17      8     12     11      8
D13V6, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            6                             17
  CLUS_2                            4                              8
  CLUS_3                            9                             12
  CLUS_4                            4                             11
  CLUS_5                            8                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q25.2) MUTATED       13      9      3      6
  DEL PEAK 13(10Q25.2) WILD-TYPE      8     16     13     19
D13V7, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                           13                              8
  CLUS_2                            9                             16
  CLUS_3                            3                             13
  CLUS_4                            6                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(10Q25.2) MUTATED       10     12      0      3      6
  DEL PEAK 13(10Q25.2) WILD-TYPE     19     13      6     10      8
D13V8, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                           10                             19
  CLUS_2                           12                             13
  CLUS_3                            0                              6
  CLUS_4                            3                             10
  CLUS_5                            6                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q25.2) MUTATED       16      4      9
  DEL PEAK 13(10Q25.2) WILD-TYPE     23     19     14
D13V9, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                           16                             23
  CLUS_2                            4                             19
  CLUS_3                            9                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q25.2) MUTATED        7      9      3     10
  DEL PEAK 13(10Q25.2) WILD-TYPE     10      9     13     24
D13V10, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            7                             10
  CLUS_2                            9                              9
  CLUS_3                            3                             13
  CLUS_4                           10                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK 14(11Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q23.2) MUTATED        3      1      5      9
  DEL PEAK 14(11Q23.2) WILD-TYPE     24     20     11     14
D14V1, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            3                             24
  CLUS_2                            1                             20
  CLUS_3                            5                             11
  CLUS_4                            9                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(11Q23.2) MUTATED        2      5      3      6      2
  DEL PEAK 14(11Q23.2) WILD-TYPE     14     14     15     19      7
D14V2, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            2                             14
  CLUS_2                            5                             14
  CLUS_3                            3                             15
  CLUS_4                            6                             19
  CLUS_5                            2                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q23.2) MUTATED        2      3      7      2
  DEL PEAK 14(11Q23.2) WILD-TYPE      6     21     17      5
D14V3, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            3                             21
  CLUS_3                            7                             17
  CLUS_4                            2                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(11Q23.2) MUTATED        1      4      3      3      0      3
  DEL PEAK 14(11Q23.2) WILD-TYPE      8      7      7      9      9      9
D14V4, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            4                              7
  CLUS_3                            3                              7
  CLUS_4                            3                              9
  CLUS_5                            0                              9
  CLUS_6                            3                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q23.2) MUTATED        2      7      5      4
  DEL PEAK 14(11Q23.2) WILD-TYPE     24     14     14     17
D14V5, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            2                             24
  CLUS_2                            7                             14
  CLUS_3                            5                             14
  CLUS_4                            4                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(11Q23.2) MUTATED        2      3      6      5      2
  DEL PEAK 14(11Q23.2) WILD-TYPE     21      9     15     10     14
D14V6, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            2                             21
  CLUS_2                            3                              9
  CLUS_3                            6                             15
  CLUS_4                            5                             10
  CLUS_5                            2                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q23.2) MUTATED        7      6      3      2
  DEL PEAK 14(11Q23.2) WILD-TYPE     14     19     13     23
D14V7, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            7                             14
  CLUS_2                            6                             19
  CLUS_3                            3                             13
  CLUS_4                            2                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(11Q23.2) MUTATED        7      5      1      5      0
  DEL PEAK 14(11Q23.2) WILD-TYPE     22     20      5      8     14
D14V8, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            7                             22
  CLUS_2                            5                             20
  CLUS_3                            1                              5
  CLUS_4                            5                              8
  CLUS_5                            0                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q23.2) MUTATED        8      6      3
  DEL PEAK 14(11Q23.2) WILD-TYPE     31     17     20
D14V9, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            8                             31
  CLUS_2                            6                             17
  CLUS_3                            3                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q23.2) MUTATED        0      6      3      8
  DEL PEAK 14(11Q23.2) WILD-TYPE     17     12     13     26
D14V10, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            0                             17
  CLUS_2                            6                             12
  CLUS_3                            3                             13
  CLUS_4                            8                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK 15(12P13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12P13.31) MUTATED        1      4      2      4
  DEL PEAK 15(12P13.31) WILD-TYPE     26     17     14     19
D15V1, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             1                              26
  CLUS_2                             4                              17
  CLUS_3                             2                              14
  CLUS_4                             4                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(12P13.31) MUTATED        0      6      2      3      0
  DEL PEAK 15(12P13.31) WILD-TYPE     16     13     16     22      9
D15V2, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             0                              16
  CLUS_2                             6                              13
  CLUS_3                             2                              16
  CLUS_4                             3                              22
  CLUS_5                             0                               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12P13.31) MUTATED        1      7      1      0
  DEL PEAK 15(12P13.31) WILD-TYPE      7     17     23      7
D15V3, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             1                               7
  CLUS_2                             7                              17
  CLUS_3                             1                              23
  CLUS_4                             0                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(12P13.31) MUTATED        1      3      0      1      2      2
  DEL PEAK 15(12P13.31) WILD-TYPE      8      8     10     11      7     10
D15V4, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             1                               8
  CLUS_2                             3                               8
  CLUS_3                             0                              10
  CLUS_4                             1                              11
  CLUS_5                             2                               7
  CLUS_6                             2                              10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12P13.31) MUTATED        0      5      4      2
  DEL PEAK 15(12P13.31) WILD-TYPE     26     16     15     19
D15V5, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             0                              26
  CLUS_2                             5                              16
  CLUS_3                             4                              15
  CLUS_4                             2                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(12P13.31) MUTATED        0      2      4      3      2
  DEL PEAK 15(12P13.31) WILD-TYPE     23     10     17     12     14
D15V6, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             0                              23
  CLUS_2                             2                              10
  CLUS_3                             4                              17
  CLUS_4                             3                              12
  CLUS_5                             2                              14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12P13.31) MUTATED        6      4      1      0
  DEL PEAK 15(12P13.31) WILD-TYPE     15     21     15     25
D15V7, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             6                              15
  CLUS_2                             4                              21
  CLUS_3                             1                              15
  CLUS_4                             0                              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(12P13.31) MUTATED        5      6      0      0      0
  DEL PEAK 15(12P13.31) WILD-TYPE     24     19      6     13     14
D15V8, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             5                              24
  CLUS_2                             6                              19
  CLUS_3                             0                               6
  CLUS_4                             0                              13
  CLUS_5                             0                              14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(12P13.31) MUTATED        5      3      2
  DEL PEAK 15(12P13.31) WILD-TYPE     34     20     21
D15V9, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             5                              34
  CLUS_2                             3                              20
  CLUS_3                             2                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12P13.31) MUTATED        0      4      1      5
  DEL PEAK 15(12P13.31) WILD-TYPE     17     14     15     29
D15V10, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             0                              17
  CLUS_2                             4                              14
  CLUS_3                             1                              15
  CLUS_4                             5                              29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK 16(13Q14.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q14.11) MUTATED       10     20      8      6
  DEL PEAK 16(13Q14.11) WILD-TYPE     17      1      8     17
D16V1, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                            10                              17
  CLUS_2                            20                               1
  CLUS_3                             8                               8
  CLUS_4                             6                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(13Q14.11) MUTATED        9     10     10     12      3
  DEL PEAK 16(13Q14.11) WILD-TYPE      7      9      8     13      6
D16V2, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                             9                               7
  CLUS_2                            10                               9
  CLUS_3                            10                               8
  CLUS_4                            12                              13
  CLUS_5                             3                               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q14.11) MUTATED        2     13      9      4
  DEL PEAK 16(13Q14.11) WILD-TYPE      6     11     15      3
D16V3, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                             2                               6
  CLUS_2                            13                              11
  CLUS_3                             9                              15
  CLUS_4                             4                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(13Q14.11) MUTATED        3      4      4      4      3     10
  DEL PEAK 16(13Q14.11) WILD-TYPE      6      7      6      8      6      2
D16V4, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                             3                               6
  CLUS_2                             4                               7
  CLUS_3                             4                               6
  CLUS_4                             4                               8
  CLUS_5                             3                               6
  CLUS_6                            10                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q14.11) MUTATED       13      8     12     11
  DEL PEAK 16(13Q14.11) WILD-TYPE     13     13      7     10
D16V5, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                            13                              13
  CLUS_2                             8                              13
  CLUS_3                            12                               7
  CLUS_4                            11                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(13Q14.11) MUTATED       11      9      9      9      6
  DEL PEAK 16(13Q14.11) WILD-TYPE     12      3     12      6     10
D16V6, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                            11                              12
  CLUS_2                             9                               3
  CLUS_3                             9                              12
  CLUS_4                             9                               6
  CLUS_5                             6                              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q14.11) MUTATED       12     12      8     12
  DEL PEAK 16(13Q14.11) WILD-TYPE      9     13      8     13
D16V7, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                            12                               9
  CLUS_2                            12                              13
  CLUS_3                             8                               8
  CLUS_4                            12                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(13Q14.11) MUTATED       14     12      5      6      7
  DEL PEAK 16(13Q14.11) WILD-TYPE     15     13      1      7      7
D16V8, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                            14                              15
  CLUS_2                            12                              13
  CLUS_3                             5                               1
  CLUS_4                             6                               7
  CLUS_5                             7                               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q14.11) MUTATED       22     13      7
  DEL PEAK 16(13Q14.11) WILD-TYPE     17     10     16
D16V9, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                            22                              17
  CLUS_2                            13                              10
  CLUS_3                             7                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q14.11) MUTATED       10      8      8     16
  DEL PEAK 16(13Q14.11) WILD-TYPE      7     10      8     18
D16V10, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                            10                               7
  CLUS_2                             8                              10
  CLUS_3                             8                               8
  CLUS_4                            16                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK 17(14Q32.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q32.31) MUTATED        1     16      9     13
  DEL PEAK 17(14Q32.31) WILD-TYPE     26      5      7     10
D17V1, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             1                              26
  CLUS_2                            16                               5
  CLUS_3                             9                               7
  CLUS_4                            13                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(14Q32.31) MUTATED        3     16      7      8      5
  DEL PEAK 17(14Q32.31) WILD-TYPE     13      3     11     17      4
D17V2, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             3                              13
  CLUS_2                            16                               3
  CLUS_3                             7                              11
  CLUS_4                             8                              17
  CLUS_5                             5                               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q32.31) MUTATED        2     12     13      3
  DEL PEAK 17(14Q32.31) WILD-TYPE      6     12     11      4
D17V3, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             2                               6
  CLUS_2                            12                              12
  CLUS_3                            13                              11
  CLUS_4                             3                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(14Q32.31) MUTATED        2      6      7      5      3      7
  DEL PEAK 17(14Q32.31) WILD-TYPE      7      5      3      7      6      5
D17V4, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             2                               7
  CLUS_2                             6                               5
  CLUS_3                             7                               3
  CLUS_4                             5                               7
  CLUS_5                             3                               6
  CLUS_6                             7                               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q32.31) MUTATED        7     17      5     10
  DEL PEAK 17(14Q32.31) WILD-TYPE     19      4     14     11
D17V5, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             7                              19
  CLUS_2                            17                               4
  CLUS_3                             5                              14
  CLUS_4                            10                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(14Q32.31) MUTATED        5      8     17      2      7
  DEL PEAK 17(14Q32.31) WILD-TYPE     18      4      4     13      9
D17V6, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             5                              18
  CLUS_2                             8                               4
  CLUS_3                            17                               4
  CLUS_4                             2                              13
  CLUS_5                             7                               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q32.31) MUTATED       14      7      7     11
  DEL PEAK 17(14Q32.31) WILD-TYPE      7     18      9     14
D17V7, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                            14                               7
  CLUS_2                             7                              18
  CLUS_3                             7                               9
  CLUS_4                            11                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(14Q32.31) MUTATED        8     15      4      9      3
  DEL PEAK 17(14Q32.31) WILD-TYPE     21     10      2      4     11
D17V8, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             8                              21
  CLUS_2                            15                              10
  CLUS_3                             4                               2
  CLUS_4                             9                               4
  CLUS_5                             3                              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q32.31) MUTATED       22     10      6
  DEL PEAK 17(14Q32.31) WILD-TYPE     17     13     17
D17V9, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                            22                              17
  CLUS_2                            10                              13
  CLUS_3                             6                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q32.31) MUTATED        5     13      7     13
  DEL PEAK 17(14Q32.31) WILD-TYPE     12      5      9     21
D17V10, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             5                              12
  CLUS_2                            13                               5
  CLUS_3                             7                               9
  CLUS_4                            13                              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK 18(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q15.1) MUTATED        4      6     11      7
  DEL PEAK 18(15Q15.1) WILD-TYPE     23     15      5     16
D18V1, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            4                             23
  CLUS_2                            6                             15
  CLUS_3                           11                              5
  CLUS_4                            7                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(15Q15.1) MUTATED        2      9      9      6      2
  DEL PEAK 18(15Q15.1) WILD-TYPE     14     10      9     19      7
D18V2, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            2                             14
  CLUS_2                            9                             10
  CLUS_3                            9                              9
  CLUS_4                            6                             19
  CLUS_5                            2                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q15.1) MUTATED        1     11      7      3
  DEL PEAK 18(15Q15.1) WILD-TYPE      7     13     17      4
D18V3, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                           11                             13
  CLUS_3                            7                             17
  CLUS_4                            3                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(15Q15.1) MUTATED        1      4      4      3      5      5
  DEL PEAK 18(15Q15.1) WILD-TYPE      8      7      6      9      4      7
D18V4, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            4                              7
  CLUS_3                            4                              6
  CLUS_4                            3                              9
  CLUS_5                            5                              4
  CLUS_6                            5                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q15.1) MUTATED        3     11      6      8
  DEL PEAK 18(15Q15.1) WILD-TYPE     23     10     13     13
D18V5, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            3                             23
  CLUS_2                           11                             10
  CLUS_3                            6                             13
  CLUS_4                            8                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(15Q15.1) MUTATED        3      3     11      6      5
  DEL PEAK 18(15Q15.1) WILD-TYPE     20      9     10      9     11
D18V6, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                            3                              9
  CLUS_3                           11                             10
  CLUS_4                            6                              9
  CLUS_5                            5                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q15.1) MUTATED        8     10      3      7
  DEL PEAK 18(15Q15.1) WILD-TYPE     13     15     13     18
D18V7, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            8                             13
  CLUS_2                           10                             15
  CLUS_3                            3                             13
  CLUS_4                            7                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(15Q15.1) MUTATED        8     10      1      6      3
  DEL PEAK 18(15Q15.1) WILD-TYPE     21     15      5      7     11
D18V8, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            8                             21
  CLUS_2                           10                             15
  CLUS_3                            1                              5
  CLUS_4                            6                              7
  CLUS_5                            3                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(15Q15.1) MUTATED       13      5      8
  DEL PEAK 18(15Q15.1) WILD-TYPE     26     18     15
D18V9, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                           13                             26
  CLUS_2                            5                             18
  CLUS_3                            8                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q15.1) MUTATED        3      8      1     14
  DEL PEAK 18(15Q15.1) WILD-TYPE     14     10     15     20
D18V10, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            3                             14
  CLUS_2                            8                             10
  CLUS_3                            1                             15
  CLUS_4                           14                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 19(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16P13.3) MUTATED        1      2      0      3
  DEL PEAK 19(16P13.3) WILD-TYPE     26     19     16     20
D19V1, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            1                             26
  CLUS_2                            2                             19
  CLUS_3                            0                             16
  CLUS_4                            3                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(16P13.3) MUTATED        0      1      0      3      2
  DEL PEAK 19(16P13.3) WILD-TYPE     16     18     18     22      7
D19V2, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            0                             16
  CLUS_2                            1                             18
  CLUS_3                            0                             18
  CLUS_4                            3                             22
  CLUS_5                            2                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16P13.3) MUTATED        0      1      1      1
  DEL PEAK 19(16P13.3) WILD-TYPE      8     23     23      6
D19V3, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                            1                             23
  CLUS_3                            1                             23
  CLUS_4                            1                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(16P13.3) MUTATED        0      0      1      0      1      1
  DEL PEAK 19(16P13.3) WILD-TYPE      9     11      9     12      8     11
D19V4, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            0                             11
  CLUS_3                            1                              9
  CLUS_4                            0                             12
  CLUS_5                            1                              8
  CLUS_6                            1                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16P13.3) MUTATED        0      1      2      3
  DEL PEAK 19(16P13.3) WILD-TYPE     26     20     17     18
D19V5, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            0                             26
  CLUS_2                            1                             20
  CLUS_3                            2                             17
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(16P13.3) MUTATED        0      0      1      2      3
  DEL PEAK 19(16P13.3) WILD-TYPE     23     12     20     13     13
D19V6, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            0                             23
  CLUS_2                            0                             12
  CLUS_3                            1                             20
  CLUS_4                            2                             13
  CLUS_5                            3                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16P13.3) MUTATED        1      2      1      2
  DEL PEAK 19(16P13.3) WILD-TYPE     20     23     15     23
D19V7, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            1                             20
  CLUS_2                            2                             23
  CLUS_3                            1                             15
  CLUS_4                            2                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(16P13.3) MUTATED        2      2      1      1      0
  DEL PEAK 19(16P13.3) WILD-TYPE     27     23      5     12     14
D19V8, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            2                             27
  CLUS_2                            2                             23
  CLUS_3                            1                              5
  CLUS_4                            1                             12
  CLUS_5                            0                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16P13.3) MUTATED        2      2      2
  DEL PEAK 19(16P13.3) WILD-TYPE     37     21     21
D19V9, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            2                             37
  CLUS_2                            2                             21
  CLUS_3                            2                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16P13.3) MUTATED        0      2      1      3
  DEL PEAK 19(16P13.3) WILD-TYPE     17     16     15     31
D19V10, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            0                             17
  CLUS_2                            2                             16
  CLUS_3                            1                             15
  CLUS_4                            3                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 20(16Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16Q24.1) MUTATED        2      8      5      7
  DEL PEAK 20(16Q24.1) WILD-TYPE     25     13     11     16
D20V1, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            8                             13
  CLUS_3                            5                             11
  CLUS_4                            7                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(16Q24.1) MUTATED        2      9      4      6      1
  DEL PEAK 20(16Q24.1) WILD-TYPE     14     10     14     19      8
D20V2, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            2                             14
  CLUS_2                            9                             10
  CLUS_3                            4                             14
  CLUS_4                            6                             19
  CLUS_5                            1                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16Q24.1) MUTATED        2      9      6      2
  DEL PEAK 20(16Q24.1) WILD-TYPE      6     15     18      5
D20V3, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            9                             15
  CLUS_3                            6                             18
  CLUS_4                            2                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(16Q24.1) MUTATED        1      3      3      3      4      5
  DEL PEAK 20(16Q24.1) WILD-TYPE      8      8      7      9      5      7
D20V4, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            3                              8
  CLUS_3                            3                              7
  CLUS_4                            3                              9
  CLUS_5                            4                              5
  CLUS_6                            5                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16Q24.1) MUTATED        3      7      5      7
  DEL PEAK 20(16Q24.1) WILD-TYPE     23     14     14     14
D20V5, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            3                             23
  CLUS_2                            7                             14
  CLUS_3                            5                             14
  CLUS_4                            7                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(16Q24.1) MUTATED        3      2      7      4      6
  DEL PEAK 20(16Q24.1) WILD-TYPE     20     10     14     11     10
D20V6, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                            2                             10
  CLUS_3                            7                             14
  CLUS_4                            4                             11
  CLUS_5                            6                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16Q24.1) MUTATED        5      7      3      7
  DEL PEAK 20(16Q24.1) WILD-TYPE     16     18     13     18
D20V7, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                            7                             18
  CLUS_3                            3                             13
  CLUS_4                            7                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(16Q24.1) MUTATED        6      8      1      6      1
  DEL PEAK 20(16Q24.1) WILD-TYPE     23     17      5      7     13
D20V8, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            8                             17
  CLUS_3                            1                              5
  CLUS_4                            6                              7
  CLUS_5                            1                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(16Q24.1) MUTATED       10      5      6
  DEL PEAK 20(16Q24.1) WILD-TYPE     29     18     17
D20V9, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                           10                             29
  CLUS_2                            5                             18
  CLUS_3                            6                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16Q24.1) MUTATED        1      7      4      9
  DEL PEAK 20(16Q24.1) WILD-TYPE     16     11     12     25
D20V10, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            1                             16
  CLUS_2                            7                             11
  CLUS_3                            4                             12
  CLUS_4                            9                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK 21(22Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q12.2) MUTATED       17     19     15     17
  DEL PEAK 21(22Q12.2) WILD-TYPE     10      2      1      6
D21V1, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           17                             10
  CLUS_2                           19                              2
  CLUS_3                           15                              1
  CLUS_4                           17                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(22Q12.2) MUTATED       12     15     18     15      8
  DEL PEAK 21(22Q12.2) WILD-TYPE      4      4      0     10      1
D21V2, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           12                              4
  CLUS_2                           15                              4
  CLUS_3                           18                              0
  CLUS_4                           15                             10
  CLUS_5                            8                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q12.2) MUTATED        4     21     19      6
  DEL PEAK 21(22Q12.2) WILD-TYPE      4      3      5      1
D21V3, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                           21                              3
  CLUS_3                           19                              5
  CLUS_4                            6                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(22Q12.2) MUTATED        6      9      8      9      7     11
  DEL PEAK 21(22Q12.2) WILD-TYPE      3      2      2      3      2      1
D21V4, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                            6                              3
  CLUS_2                            9                              2
  CLUS_3                            8                              2
  CLUS_4                            9                              3
  CLUS_5                            7                              2
  CLUS_6                           11                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q12.2) MUTATED       20     17     11     20
  DEL PEAK 21(22Q12.2) WILD-TYPE      6      4      8      1
D21V5, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           20                              6
  CLUS_2                           17                              4
  CLUS_3                           11                              8
  CLUS_4                           20                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(22Q12.2) MUTATED       16     12     17      8     15
  DEL PEAK 21(22Q12.2) WILD-TYPE      7      0      4      7      1
D21V6, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           16                              7
  CLUS_2                           12                              0
  CLUS_3                           17                              4
  CLUS_4                            8                              7
  CLUS_5                           15                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q12.2) MUTATED       19     22      9     18
  DEL PEAK 21(22Q12.2) WILD-TYPE      2      3      7      7
D21V7, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           19                              2
  CLUS_2                           22                              3
  CLUS_3                            9                              7
  CLUS_4                           18                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(22Q12.2) MUTATED       23     18      4     12     11
  DEL PEAK 21(22Q12.2) WILD-TYPE      6      7      2      1      3
D21V8, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           23                              6
  CLUS_2                           18                              7
  CLUS_3                            4                              2
  CLUS_4                           12                              1
  CLUS_5                           11                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q12.2) MUTATED       32     15     20
  DEL PEAK 21(22Q12.2) WILD-TYPE      7      8      3
D21V9, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           32                              7
  CLUS_2                           15                              8
  CLUS_3                           20                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q12.2) MUTATED       13     15     10     29
  DEL PEAK 21(22Q12.2) WILD-TYPE      4      3      6      5
D21V10, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           13                              4
  CLUS_2                           15                              3
  CLUS_3                           10                              6
  CLUS_4                           29                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
