[1] "started"
[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/analysis.results.RData"
[1] "MUTSIG"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
                         V1.D                            V2 
              "Time to Death"              "YEARS_TO_BIRTH" 
                           V3                            V4 
          "TUMOR_TISSUE_SITE"           "RADIATION_THERAPY" 
                           V5                            V6 
"KARNOFSKY_PERFORMANCE_SCORE"              "RESIDUAL_TUMOR" 
                           V7 
                  "ETHNICITY" 
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[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D1V1.png"
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[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D1V2.png"
[1] FALSE
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[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D1V3.png"
[1] FALSE
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[1] FALSE
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[1] FALSE
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[1] FALSE
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[1] TRUE
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[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D2V1.png"
[1] FALSE
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[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D2V3.png"
[1] FALSE
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[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D2V7.png"
[1] FALSE
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[1] FALSE
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[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D3V2.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D3V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D3V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D3V7.png"
[1] FALSE
[1] "symlink"
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[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D4V2.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D4V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D4V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D4V6.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D4V7.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D5V1.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D5V2.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D5V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D5V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D5V5.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D5V7.png"
[1] FALSE
[1] "symlink"
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[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D6V2.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D6V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D6V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D6V7.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D7V1.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D7V2.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D7V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D7V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D7V7.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D8V1.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D8V2.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D8V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D8V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D8V7.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D9V1.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D9V2.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D9V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D9V4.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D9V7.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D10V1.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D10V2.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D10V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D10V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D10V7.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D11V1.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D11V2.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D11V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D11V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D11V7.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D12V1.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D12V2.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D12V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D12V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D12V7.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D13V1.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D13V2.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D13V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D13V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D13V7.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D14V1.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D14V2.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D14V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D14V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D14V7.png"
[1] FALSE
[1] "symlink"
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[1] TRUE
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[1] FALSE
[1] "symlink"
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[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D15V4.png"
[1] FALSE
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[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D15V7.png"
[1] FALSE
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[1] FALSE
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[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D16V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D16V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D16V7.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D17V1.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D17V2.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D17V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D17V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D17V7.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D18V1.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D18V2.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D18V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D18V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D18V7.png"
[1] FALSE
[1] "symlink"
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[1] TRUE
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[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D19V2.png"
[1] FALSE
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[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D19V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D19V7.png"
[1] TRUE
[1] "symlink"
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[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D20V2.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D20V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D20V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D20V5.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D20V7.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D21V1.png"
[1] TRUE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D21V2.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D21V3.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D21V4.png"
[1] FALSE
[1] "symlink"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/OV-TP/22572523/D21V7.png"
[1] FALSE
