[1] "ofn"        "-oTPAAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PAAD-TP/22541963/PAAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/22533737/transformed.cor.cli.txt"

nPatients in clinical file=185, in cluster file=184, common to both=184
[1] "Reduce the number of clustering variables from 82 to 80."
[1]  80 184
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               22               162 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               22               162 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               52               132 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               52               132 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               16               168 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               16               168 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               18               166 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               18               166 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               10               174 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               10               174 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               20               164 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               20               164 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               11               173 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               11               173 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                9               175 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                9               175 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               28               156 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               28               156 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               22               162 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               22               162 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                7               177 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                7               177 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                5               179 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                5               179 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               53               131 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               53               131 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               49               135 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               49               135 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               25               159 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               25               159 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               48               136 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               48               136 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                8               176 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                8               176 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               12               172 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               12               172 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                10                174 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                10                174 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                13                171 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                13                171 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                14                170 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                14                170 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                17                167 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                17                167 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                32                152 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                32                152 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                24                160 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                24                160 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                28                156 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                28                156 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                26                158 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                26                158 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                15                169 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                15                169 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                23                161 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                23                161 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                23                161 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                23                161 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                10                174 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                10                174 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                19                165 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                19                165 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                29                155 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                29                155 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                13                171 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                13                171 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                19                165 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                19                165 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                29                155 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                29                155 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                36                148 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                36                148 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                46                138 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                46                138 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 7                177 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 7                177 
[1] "XP GAIN MUTATION ANALYSIS"
[1] 3
  XP GAIN MUTATED XP GAIN WILD-TYPE 
                8               176 
  XP GAIN MUTATED XP GAIN WILD-TYPE 
                8               176 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               15               169 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               15               169 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               34               150 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               34               150 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                8               176 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                8               176 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               10               174 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               10               174 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                4               180 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                4               180 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               36               148 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               36               148 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               19               165 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               19               165 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               25               159 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               25               159 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               24               160 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               24               160 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                9               175 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                9               175 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               11               173 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               11               173 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               64               120 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               64               120 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               82               102 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               82               102 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                3               181 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                3               181 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               42               142 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               42               142 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               16               168 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               16               168 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               74               110 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               74               110 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               43               141 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               43               141 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                36                148 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                36                148 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                30                154 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                30                154 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                17                167 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                17                167 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                15                169 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                15                169 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                19                165 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                19                165 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                28                156 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                28                156 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                20                164 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                20                164 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                15                169 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                15                169 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                30                154 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                30                154 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                10                174 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                10                174 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                13                171 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                13                171 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                79                105 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                79                105 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                19                165 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                19                165 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                54                130 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                54                130 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               104                 80 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               104                 80 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                17                167 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                17                167 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                11                173 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                11                173 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                19                165 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                19                165 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 5                179 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 5                179 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                58                126 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                58                126 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                47                137 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                47                137 
[1] "XP LOSS MUTATION ANALYSIS"
[1] 3
  XP LOSS MUTATED XP LOSS WILD-TYPE 
               27               157 
  XP LOSS MUTATED XP LOSS WILD-TYPE 
               27               157 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               16               168 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               16               168 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 184 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 184 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        4     11      4      3
  1P GAIN WILD-TYPE     22     63     42     35
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               4                22
  CLUS_2              11                63
  CLUS_3               4                42
  CLUS_4               3                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        9      2      7      4
  1P GAIN WILD-TYPE     36     47     45     33
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               9                36
  CLUS_2               2                47
  CLUS_3               7                45
  CLUS_4               4                33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        3      4      2      4      1
  1P GAIN WILD-TYPE     36     21     18     11     22
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               3                36
  CLUS_2               4                21
  CLUS_3               2                18
  CLUS_4               4                11
  CLUS_5               1                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        3      5      2      4      0
  1P GAIN WILD-TYPE     44     20     14     12     18
D1V4, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               3                44
  CLUS_2               5                20
  CLUS_3               2                14
  CLUS_4               4                12
  CLUS_5               0                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        5      4      6      4      2
  1P GAIN WILD-TYPE     34     22     37     35     28
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               5                34
  CLUS_2               4                22
  CLUS_3               6                37
  CLUS_4               4                35
  CLUS_5               2                28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        7     12      2
  1P GAIN WILD-TYPE     67     63     26
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               7                67
  CLUS_2              12                63
  CLUS_3               2                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        6      4      3      5      3
  1P GAIN WILD-TYPE     46     43     22     26     19
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               6                46
  CLUS_2               4                43
  CLUS_3               3                22
  CLUS_4               5                26
  CLUS_5               3                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       14      4      3
  1P GAIN WILD-TYPE     88     38     30
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              14                88
  CLUS_2               4                38
  CLUS_3               3                30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P GAIN MUTATED        4      3      3      2      6      1      1
  1P GAIN WILD-TYPE     23      8     24     11     45     26     16
D1V9, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               4                23
  CLUS_2               3                 8
  CLUS_3               3                24
  CLUS_4               2                11
  CLUS_5               6                45
  CLUS_6               1                26
  CLUS_7               1                16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P GAIN MUTATED        2      7      2      6      3      0
  1P GAIN WILD-TYPE     21     37     17     47     23      8
D1V10, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               2                21
  CLUS_2               7                37
  CLUS_3               2                17
  CLUS_4               6                47
  CLUS_5               3                23
  CLUS_6               0                 8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        7     29      5     11
  1Q GAIN WILD-TYPE     19     45     41     27
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               7                19
  CLUS_2              29                45
  CLUS_3               5                41
  CLUS_4              11                27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       25      7     16      4
  1Q GAIN WILD-TYPE     20     42     36     33
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              25                20
  CLUS_2               7                42
  CLUS_3              16                36
  CLUS_4               4                33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED       13      6      3      6      5
  1Q GAIN WILD-TYPE     26     19     17      9     18
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              13                26
  CLUS_2               6                19
  CLUS_3               3                17
  CLUS_4               6                 9
  CLUS_5               5                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED       12      8      4      7      2
  1Q GAIN WILD-TYPE     35     17     12      9     16
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              12                35
  CLUS_2               8                17
  CLUS_3               4                12
  CLUS_4               7                 9
  CLUS_5               2                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED       18      5     12     10      4
  1Q GAIN WILD-TYPE     21     21     31     29     26
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              18                21
  CLUS_2               5                21
  CLUS_3              12                31
  CLUS_4              10                29
  CLUS_5               4                26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       19     27      3
  1Q GAIN WILD-TYPE     55     48     25
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              19                55
  CLUS_2              27                48
  CLUS_3               3                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED       22      7      7      9      4
  1Q GAIN WILD-TYPE     30     40     18     22     18
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              22                30
  CLUS_2               7                40
  CLUS_3               7                18
  CLUS_4               9                22
  CLUS_5               4                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       36      9      4
  1Q GAIN WILD-TYPE     66     33     29
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              36                66
  CLUS_2               9                33
  CLUS_3               4                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q GAIN MUTATED        7      4      6      2     22      6      1
  1Q GAIN WILD-TYPE     20      7     21     11     29     21     16
D2V9, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               7                20
  CLUS_2               4                 7
  CLUS_3               6                21
  CLUS_4               2                11
  CLUS_5              22                29
  CLUS_6               6                21
  CLUS_7               1                16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q GAIN MUTATED        8     14      6     16      4      0
  1Q GAIN WILD-TYPE     15     30     13     37     22      8
D2V10, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               8                15
  CLUS_2              14                30
  CLUS_3               6                13
  CLUS_4              16                37
  CLUS_5               4                22
  CLUS_6               0                 8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        2      9      1      4
  2P GAIN WILD-TYPE     24     65     45     34
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               2                24
  CLUS_2               9                65
  CLUS_3               1                45
  CLUS_4               4                34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        6      0     10      0
  2P GAIN WILD-TYPE     39     49     42     37
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               6                39
  CLUS_2               0                49
  CLUS_3              10                42
  CLUS_4               0                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        7      1      1      1      3
  2P GAIN WILD-TYPE     32     24     19     14     20
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               7                32
  CLUS_2               1                24
  CLUS_3               1                19
  CLUS_4               1                14
  CLUS_5               3                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        8      2      1      0      2
  2P GAIN WILD-TYPE     39     23     15     16     16
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               8                39
  CLUS_2               2                23
  CLUS_3               1                15
  CLUS_4               0                16
  CLUS_5               2                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        4      2      9      1      0
  2P GAIN WILD-TYPE     35     24     34     38     30
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               4                35
  CLUS_2               2                24
  CLUS_3               9                34
  CLUS_4               1                38
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        8      8      0
  2P GAIN WILD-TYPE     66     67     28
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               8                66
  CLUS_2               8                67
  CLUS_3               0                28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        6      4      1      4      1
  2P GAIN WILD-TYPE     46     43     24     27     21
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               6                46
  CLUS_2               4                43
  CLUS_3               1                24
  CLUS_4               4                27
  CLUS_5               1                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       15      0      1
  2P GAIN WILD-TYPE     87     42     32
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              15                87
  CLUS_2               0                42
  CLUS_3               1                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P GAIN MUTATED        0      2      4      0      8      2      0
  2P GAIN WILD-TYPE     27      9     23     13     43     25     17
D3V9, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               0                27
  CLUS_2               2                 9
  CLUS_3               4                23
  CLUS_4               0                13
  CLUS_5               8                43
  CLUS_6               2                25
  CLUS_7               0                17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P GAIN MUTATED        4      7      2      2      1      0
  2P GAIN WILD-TYPE     19     37     17     51     25      8
D3V10, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               4                19
  CLUS_2               7                37
  CLUS_3               2                17
  CLUS_4               2                51
  CLUS_5               1                25
  CLUS_6               0                 8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        3     10      1      4
  2Q GAIN WILD-TYPE     23     64     45     34
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               3                23
  CLUS_2              10                64
  CLUS_3               1                45
  CLUS_4               4                34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        7      0     11      0
  2Q GAIN WILD-TYPE     38     49     41     37
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               7                38
  CLUS_2               0                49
  CLUS_3              11                41
  CLUS_4               0                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        7      1      1      1      3
  2Q GAIN WILD-TYPE     32     24     19     14     20
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               7                32
  CLUS_2               1                24
  CLUS_3               1                19
  CLUS_4               1                14
  CLUS_5               3                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        8      2      1      0      2
  2Q GAIN WILD-TYPE     39     23     15     16     16
D4V4, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               8                39
  CLUS_2               2                23
  CLUS_3               1                15
  CLUS_4               0                16
  CLUS_5               2                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        4      2     10      1      1
  2Q GAIN WILD-TYPE     35     24     33     38     29
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               4                35
  CLUS_2               2                24
  CLUS_3              10                33
  CLUS_4               1                38
  CLUS_5               1                29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        8     10      0
  2Q GAIN WILD-TYPE     66     65     28
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               8                66
  CLUS_2              10                65
  CLUS_3               0                28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        7      5      1      4      1
  2Q GAIN WILD-TYPE     45     42     24     27     21
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               7                45
  CLUS_2               5                42
  CLUS_3               1                24
  CLUS_4               4                27
  CLUS_5               1                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       17      0      1
  2Q GAIN WILD-TYPE     85     42     32
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              17                85
  CLUS_2               0                42
  CLUS_3               1                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q GAIN MUTATED        0      3      4      1      8      2      0
  2Q GAIN WILD-TYPE     27      8     23     12     43     25     17
D4V9, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               0                27
  CLUS_2               3                 8
  CLUS_3               4                23
  CLUS_4               1                12
  CLUS_5               8                43
  CLUS_6               2                25
  CLUS_7               0                17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2Q GAIN MUTATED        5      7      3      2      1      0
  2Q GAIN WILD-TYPE     18     37     16     51     25      8
D4V10, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               5                18
  CLUS_2               7                37
  CLUS_3               3                16
  CLUS_4               2                51
  CLUS_5               1                25
  CLUS_6               0                 8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        1      8      1      0
  3P GAIN WILD-TYPE     25     66     45     38
D5V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               1                25
  CLUS_2               8                66
  CLUS_3               1                45
  CLUS_4               0                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        4      0      6      0
  3P GAIN WILD-TYPE     41     49     46     37
D5V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               4                41
  CLUS_2               0                49
  CLUS_3               6                46
  CLUS_4               0                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        3      0      1      0      2
  3P GAIN WILD-TYPE     36     25     19     15     21
D5V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                36
  CLUS_2               0                25
  CLUS_3               1                19
  CLUS_4               0                15
  CLUS_5               2                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        2      1      0      0      3
  3P GAIN WILD-TYPE     45     24     16     16     15
D5V4, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                45
  CLUS_2               1                24
  CLUS_3               0                16
  CLUS_4               0                16
  CLUS_5               3                15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        1      0      7      1      1
  3P GAIN WILD-TYPE     38     26     36     38     29
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               1                38
  CLUS_2               0                26
  CLUS_3               7                36
  CLUS_4               1                38
  CLUS_5               1                29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        3      6      1
  3P GAIN WILD-TYPE     71     69     27
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                71
  CLUS_2               6                69
  CLUS_3               1                27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        3      3      1      2      1
  3P GAIN WILD-TYPE     49     44     24     29     21
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                49
  CLUS_2               3                44
  CLUS_3               1                24
  CLUS_4               2                29
  CLUS_5               1                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        8      1      1
  3P GAIN WILD-TYPE     94     41     32
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               8                94
  CLUS_2               1                41
  CLUS_3               1                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P GAIN MUTATED        1      2      3      0      3      1      0
  3P GAIN WILD-TYPE     26      9     24     13     48     26     17
D5V9, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               1                26
  CLUS_2               2                 9
  CLUS_3               3                24
  CLUS_4               0                13
  CLUS_5               3                48
  CLUS_6               1                26
  CLUS_7               0                17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3P GAIN MUTATED        1      5      1      2      1      0
  3P GAIN WILD-TYPE     22     39     18     51     25      8
D5V10, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               1                22
  CLUS_2               5                39
  CLUS_3               1                18
  CLUS_4               2                51
  CLUS_5               1                25
  CLUS_6               0                 8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        2     15      1      2
  3Q GAIN WILD-TYPE     24     59     45     36
D6V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                24
  CLUS_2              15                59
  CLUS_3               1                45
  CLUS_4               2                36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        8      0     12      0
  3Q GAIN WILD-TYPE     37     49     40     37
D6V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               8                37
  CLUS_2               0                49
  CLUS_3              12                40
  CLUS_4               0                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        5      1      3      0      5
  3Q GAIN WILD-TYPE     34     24     17     15     18
D6V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               5                34
  CLUS_2               1                24
  CLUS_3               3                17
  CLUS_4               0                15
  CLUS_5               5                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        5      2      1      0      6
  3Q GAIN WILD-TYPE     42     23     15     16     12
D6V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               5                42
  CLUS_2               2                23
  CLUS_3               1                15
  CLUS_4               0                16
  CLUS_5               6                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        2      1     13      2      2
  3Q GAIN WILD-TYPE     37     25     30     37     28
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                37
  CLUS_2               1                25
  CLUS_3              13                30
  CLUS_4               2                37
  CLUS_5               2                28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        6     12      2
  3Q GAIN WILD-TYPE     68     63     26
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               6                68
  CLUS_2              12                63
  CLUS_3               2                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        7      6      1      3      3
  3Q GAIN WILD-TYPE     45     41     24     28     19
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               7                45
  CLUS_2               6                41
  CLUS_3               1                24
  CLUS_4               3                28
  CLUS_5               3                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       16      1      3
  3Q GAIN WILD-TYPE     86     41     30
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              16                86
  CLUS_2               1                41
  CLUS_3               3                30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q GAIN MUTATED        2      2      4      1      6      4      0
  3Q GAIN WILD-TYPE     25      9     23     12     45     23     17
D6V9, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                25
  CLUS_2               2                 9
  CLUS_3               4                23
  CLUS_4               1                12
  CLUS_5               6                45
  CLUS_6               4                23
  CLUS_7               0                17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q GAIN MUTATED        1     10      1      4      3      0
  3Q GAIN WILD-TYPE     22     34     18     49     23      8
D6V10, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               1                22
  CLUS_2              10                34
  CLUS_3               1                18
  CLUS_4               4                49
  CLUS_5               3                23
  CLUS_6               0                 8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        1      4      0      6
  4P GAIN WILD-TYPE     25     70     46     32
D7V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                25
  CLUS_2               4                70
  CLUS_3               0                46
  CLUS_4               6                32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        1      4      4      2
  4P GAIN WILD-TYPE     44     45     48     35
D7V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                44
  CLUS_2               4                45
  CLUS_3               4                48
  CLUS_4               2                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED        2      0      2      1      0
  4P GAIN WILD-TYPE     37     25     18     14     23
D7V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                37
  CLUS_2               0                25
  CLUS_3               2                18
  CLUS_4               1                14
  CLUS_5               0                23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED        1      0      0      3      1
  4P GAIN WILD-TYPE     46     25     16     13     17
D7V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                46
  CLUS_2               0                25
  CLUS_3               0                16
  CLUS_4               3                13
  CLUS_5               1                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED        1      5      2      0      3
  4P GAIN WILD-TYPE     38     21     41     39     27
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                38
  CLUS_2               5                21
  CLUS_3               2                41
  CLUS_4               0                39
  CLUS_5               3                27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        1      5      5
  4P GAIN WILD-TYPE     73     70     23
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                73
  CLUS_2               5                70
  CLUS_3               5                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED        4      1      0      4      2
  4P GAIN WILD-TYPE     48     46     25     27     20
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4                48
  CLUS_2               1                46
  CLUS_3               0                25
  CLUS_4               4                27
  CLUS_5               2                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        6      0      5
  4P GAIN WILD-TYPE     96     42     28
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               6                96
  CLUS_2               0                42
  CLUS_3               5                28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P GAIN MUTATED        0      1      2      2      1      1      4
  4P GAIN WILD-TYPE     27     10     25     11     50     26     13
D7V9, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                27
  CLUS_2               1                10
  CLUS_3               2                25
  CLUS_4               2                11
  CLUS_5               1                50
  CLUS_6               1                26
  CLUS_7               4                13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P GAIN MUTATED        0      2      2      2      1      4
  4P GAIN WILD-TYPE     23     42     17     51     25      4
D7V10, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                23
  CLUS_2               2                42
  CLUS_3               2                17
  CLUS_4               2                51
  CLUS_5               1                25
  CLUS_6               4                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        0      3      0      6
  4Q GAIN WILD-TYPE     26     71     46     32
D8V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                26
  CLUS_2               3                71
  CLUS_3               0                46
  CLUS_4               6                32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        1      4      3      1
  4Q GAIN WILD-TYPE     44     45     49     36
D8V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                44
  CLUS_2               4                45
  CLUS_3               3                49
  CLUS_4               1                36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED        2      0      2      1      0
  4Q GAIN WILD-TYPE     37     25     18     14     23
D8V3, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2                37
  CLUS_2               0                25
  CLUS_3               2                18
  CLUS_4               1                14
  CLUS_5               0                23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED        1      0      0      3      1
  4Q GAIN WILD-TYPE     46     25     16     13     17
D8V4, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                46
  CLUS_2               0                25
  CLUS_3               0                16
  CLUS_4               3                13
  CLUS_5               1                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED        1      5      1      0      2
  4Q GAIN WILD-TYPE     38     21     42     39     28
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                38
  CLUS_2               5                21
  CLUS_3               1                42
  CLUS_4               0                39
  CLUS_5               2                28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        1      3      5
  4Q GAIN WILD-TYPE     73     72     23
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                73
  CLUS_2               3                72
  CLUS_3               5                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED        3      0      0      4      2
  4Q GAIN WILD-TYPE     49     47     25     27     20
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               3                49
  CLUS_2               0                47
  CLUS_3               0                25
  CLUS_4               4                27
  CLUS_5               2                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        4      0      5
  4Q GAIN WILD-TYPE     98     42     28
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4                98
  CLUS_2               0                42
  CLUS_3               5                28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q GAIN MUTATED        0      0      2      1      1      1      4
  4Q GAIN WILD-TYPE     27     11     25     12     50     26     13
D8V9, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                27
  CLUS_2               0                11
  CLUS_3               2                25
  CLUS_4               1                12
  CLUS_5               1                50
  CLUS_6               1                26
  CLUS_7               4                13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4Q GAIN MUTATED        0      1      1      2      1      4
  4Q GAIN WILD-TYPE     23     43     18     51     25      4
D8V10, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                23
  CLUS_2               1                43
  CLUS_3               1                18
  CLUS_4               2                51
  CLUS_5               1                25
  CLUS_6               4                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        3     12      2     11
  5P GAIN WILD-TYPE     23     62     44     27
D9V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               3                23
  CLUS_2              12                62
  CLUS_3               2                44
  CLUS_4              11                27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        8      7     10      3
  5P GAIN WILD-TYPE     37     42     42     34
D9V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               8                37
  CLUS_2               7                42
  CLUS_3              10                42
  CLUS_4               3                34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        7      4      2      1      2
  5P GAIN WILD-TYPE     32     21     18     14     21
D9V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               7                32
  CLUS_2               4                21
  CLUS_3               2                18
  CLUS_4               1                14
  CLUS_5               2                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        6      4      0      3      3
  5P GAIN WILD-TYPE     41     21     16     13     15
D9V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               6                41
  CLUS_2               4                21
  CLUS_3               0                16
  CLUS_4               3                13
  CLUS_5               3                15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        6      7      9      3      3
  5P GAIN WILD-TYPE     33     19     34     36     27
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               6                33
  CLUS_2               7                19
  CLUS_3               9                34
  CLUS_4               3                36
  CLUS_5               3                27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        9     11      8
  5P GAIN WILD-TYPE     65     64     20
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               9                65
  CLUS_2              11                64
  CLUS_3               8                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        8      3      4     11      2
  5P GAIN WILD-TYPE     44     44     21     20     20
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               8                44
  CLUS_2               3                44
  CLUS_3               4                21
  CLUS_4              11                20
  CLUS_5               2                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       17      3      8
  5P GAIN WILD-TYPE     85     39     25
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              17                85
  CLUS_2               3                39
  CLUS_3               8                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P GAIN MUTATED        4      1      1      2     13      1      6
  5P GAIN WILD-TYPE     23     10     26     11     38     26     11
D9V9, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               4                23
  CLUS_2               1                10
  CLUS_3               1                26
  CLUS_4               2                11
  CLUS_5              13                38
  CLUS_6               1                26
  CLUS_7               6                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P GAIN MUTATED        1      9      4      6      2      6
  5P GAIN WILD-TYPE     22     35     15     47     24      2
D9V10, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                22
  CLUS_2               9                35
  CLUS_3               4                15
  CLUS_4               6                47
  CLUS_5               2                24
  CLUS_6               6                 2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        1      9      2     10
  5Q GAIN WILD-TYPE     25     65     44     28
D10V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                25
  CLUS_2               9                65
  CLUS_3               2                44
  CLUS_4              10                28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        6      7      7      2
  5Q GAIN WILD-TYPE     39     42     45     35
D10V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               6                39
  CLUS_2               7                42
  CLUS_3               7                45
  CLUS_4               2                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        7      2      2      1      2
  5Q GAIN WILD-TYPE     32     23     18     14     21
D10V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               7                32
  CLUS_2               2                23
  CLUS_3               2                18
  CLUS_4               1                14
  CLUS_5               2                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        6      2      0      3      3
  5Q GAIN WILD-TYPE     41     23     16     13     15
D10V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               6                41
  CLUS_2               2                23
  CLUS_3               0                16
  CLUS_4               3                13
  CLUS_5               3                15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        4      6      8      2      2
  5Q GAIN WILD-TYPE     35     20     35     37     28
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               4                35
  CLUS_2               6                20
  CLUS_3               8                35
  CLUS_4               2                37
  CLUS_5               2                28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        8      6      8
  5Q GAIN WILD-TYPE     66     69     20
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               8                66
  CLUS_2               6                69
  CLUS_3               8                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        7      1      3      9      2
  5Q GAIN WILD-TYPE     45     46     22     22     20
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               7                45
  CLUS_2               1                46
  CLUS_3               3                22
  CLUS_4               9                22
  CLUS_5               2                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       12      2      8
  5Q GAIN WILD-TYPE     90     40     25
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              12                90
  CLUS_2               2                40
  CLUS_3               8                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q GAIN MUTATED        2      0      2      1     11      1      5
  5Q GAIN WILD-TYPE     25     11     25     12     40     26     12
D10V9, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               2                25
  CLUS_2               0                11
  CLUS_3               2                25
  CLUS_4               1                12
  CLUS_5              11                40
  CLUS_6               1                26
  CLUS_7               5                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q GAIN MUTATED        1      6      2      5      2      6
  5Q GAIN WILD-TYPE     22     38     17     48     24      2
D10V10, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                22
  CLUS_2               6                38
  CLUS_3               2                17
  CLUS_4               5                48
  CLUS_5               2                24
  CLUS_6               6                 2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        0      5      2      0
  6P GAIN WILD-TYPE     26     69     44     38
D11V1, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               0                26
  CLUS_2               5                69
  CLUS_3               2                44
  CLUS_4               0                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        2      2      3      0
  6P GAIN WILD-TYPE     43     47     49     37
D11V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               2                43
  CLUS_2               2                47
  CLUS_3               3                49
  CLUS_4               0                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        2      1      0      0      2
  6P GAIN WILD-TYPE     37     24     20     15     21
D11V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               2                37
  CLUS_2               1                24
  CLUS_3               0                20
  CLUS_4               0                15
  CLUS_5               2                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        1      1      0      1      2
  6P GAIN WILD-TYPE     46     24     16     15     16
D11V4, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               1                46
  CLUS_2               1                24
  CLUS_3               0                16
  CLUS_4               1                15
  CLUS_5               2                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        2      2      2      1      0
  6P GAIN WILD-TYPE     37     24     41     38     30
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               2                37
  CLUS_2               2                24
  CLUS_3               2                41
  CLUS_4               1                38
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        3      3      1
  6P GAIN WILD-TYPE     71     72     27
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               3                71
  CLUS_2               3                72
  CLUS_3               1                27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        1      1      0      5      0
  6P GAIN WILD-TYPE     51     46     25     26     22
D11V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               1                51
  CLUS_2               1                46
  CLUS_3               0                25
  CLUS_4               5                26
  CLUS_5               0                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        5      1      1
  6P GAIN WILD-TYPE     97     41     32
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               5                97
  CLUS_2               1                41
  CLUS_3               1                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P GAIN MUTATED        2      0      1      0      2      0      1
  6P GAIN WILD-TYPE     25     11     26     13     49     27     16
D11V9, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               2                25
  CLUS_2               0                11
  CLUS_3               1                26
  CLUS_4               0                13
  CLUS_5               2                49
  CLUS_6               0                27
  CLUS_7               1                16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P GAIN MUTATED        1      1      1      2      0      1
  6P GAIN WILD-TYPE     22     43     18     51     26      7
D11V10, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               1                22
  CLUS_2               1                43
  CLUS_3               1                18
  CLUS_4               2                51
  CLUS_5               0                26
  CLUS_6               1                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        0      3      2      0
  6Q GAIN WILD-TYPE     26     71     44     38
D12V1, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               0                26
  CLUS_2               3                71
  CLUS_3               2                44
  CLUS_4               0                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        2      2      1      0
  6Q GAIN WILD-TYPE     43     47     51     37
D12V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               2                43
  CLUS_2               2                47
  CLUS_3               1                51
  CLUS_4               0                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        1      1      0      0      1
  6Q GAIN WILD-TYPE     38     24     20     15     22
D12V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                38
  CLUS_2               1                24
  CLUS_3               0                20
  CLUS_4               0                15
  CLUS_5               1                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        1      1      0      0      1
  6Q GAIN WILD-TYPE     46     24     16     16     17
D12V4, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                46
  CLUS_2               1                24
  CLUS_3               0                16
  CLUS_4               0                16
  CLUS_5               1                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        1      2      1      1      0
  6Q GAIN WILD-TYPE     38     24     42     38     30
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                38
  CLUS_2               2                24
  CLUS_3               1                42
  CLUS_4               1                38
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        2      2      1
  6Q GAIN WILD-TYPE     72     73     27
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               2                72
  CLUS_2               2                73
  CLUS_3               1                27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        0      1      0      4      0
  6Q GAIN WILD-TYPE     52     46     25     27     22
D12V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               0                52
  CLUS_2               1                46
  CLUS_3               0                25
  CLUS_4               4                27
  CLUS_5               0                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        3      1      1
  6Q GAIN WILD-TYPE     99     41     32
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               3                99
  CLUS_2               1                41
  CLUS_3               1                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q GAIN MUTATED        2      0      1      0      0      0      1
  6Q GAIN WILD-TYPE     25     11     26     13     51     27     16
D12V9, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               2                25
  CLUS_2               0                11
  CLUS_3               1                26
  CLUS_4               0                13
  CLUS_5               0                51
  CLUS_6               0                27
  CLUS_7               1                16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q GAIN MUTATED        1      0      0      2      0      1
  6Q GAIN WILD-TYPE     22     44     19     51     26      7
D12V10, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                22
  CLUS_2               0                44
  CLUS_3               0                19
  CLUS_4               2                51
  CLUS_5               0                26
  CLUS_6               1                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        6     28      4     15
  7P GAIN WILD-TYPE     20     46     42     23
D13V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               6                20
  CLUS_2              28                46
  CLUS_3               4                42
  CLUS_4              15                23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       16     10     20      6
  7P GAIN WILD-TYPE     29     39     32     31
D13V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              16                29
  CLUS_2              10                39
  CLUS_3              20                32
  CLUS_4               6                31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED       16      9      1      1      7
  7P GAIN WILD-TYPE     23     16     19     14     16
D13V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              16                23
  CLUS_2               9                16
  CLUS_3               1                19
  CLUS_4               1                14
  CLUS_5               7                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED       16      9      0      4      5
  7P GAIN WILD-TYPE     31     16     16     12     13
D13V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              16                31
  CLUS_2               9                16
  CLUS_3               0                16
  CLUS_4               4                12
  CLUS_5               5                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED       16     10     15      7      3
  7P GAIN WILD-TYPE     23     16     28     32     27
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              16                23
  CLUS_2              10                16
  CLUS_3              15                28
  CLUS_4               7                32
  CLUS_5               3                27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       17     27      7
  7P GAIN WILD-TYPE     57     48     21
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              17                57
  CLUS_2              27                48
  CLUS_3               7                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED       17     11      5     14      4
  7P GAIN WILD-TYPE     35     36     20     17     18
D13V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              17                35
  CLUS_2              11                36
  CLUS_3               5                20
  CLUS_4              14                17
  CLUS_5               4                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       37      7      7
  7P GAIN WILD-TYPE     65     35     26
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              37                65
  CLUS_2               7                35
  CLUS_3               7                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P GAIN MUTATED        6      5      8      1     21      3      6
  7P GAIN WILD-TYPE     21      6     19     12     30     24     11
D13V9, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               6                21
  CLUS_2               5                 6
  CLUS_3               8                19
  CLUS_4               1                12
  CLUS_5              21                30
  CLUS_6               3                24
  CLUS_7               6                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7P GAIN MUTATED        6     17      8     11      2      6
  7P GAIN WILD-TYPE     17     27     11     42     24      2
D13V10, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               6                17
  CLUS_2              17                27
  CLUS_3               8                11
  CLUS_4              11                42
  CLUS_5               2                24
  CLUS_6               6                 2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        6     26      4     13
  7Q GAIN WILD-TYPE     20     48     42     25
D14V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               6                20
  CLUS_2              26                48
  CLUS_3               4                42
  CLUS_4              13                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       15     11     16      6
  7Q GAIN WILD-TYPE     30     38     36     31
D14V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              15                30
  CLUS_2              11                38
  CLUS_3              16                36
  CLUS_4               6                31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED       14      7      1      1      6
  7Q GAIN WILD-TYPE     25     18     19     14     17
D14V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              14                25
  CLUS_2               7                18
  CLUS_3               1                19
  CLUS_4               1                14
  CLUS_5               6                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED       14      7      0      4      4
  7Q GAIN WILD-TYPE     33     18     16     12     14
D14V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              14                33
  CLUS_2               7                18
  CLUS_3               0                16
  CLUS_4               4                12
  CLUS_5               4                14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED       13     10     13      8      3
  7Q GAIN WILD-TYPE     26     16     30     31     27
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              13                26
  CLUS_2              10                16
  CLUS_3              13                30
  CLUS_4               8                31
  CLUS_5               3                27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       15     25      7
  7Q GAIN WILD-TYPE     59     50     21
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              15                59
  CLUS_2              25                50
  CLUS_3               7                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED       14     11      5     13      4
  7Q GAIN WILD-TYPE     38     36     20     18     18
D14V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              14                38
  CLUS_2              11                36
  CLUS_3               5                20
  CLUS_4              13                18
  CLUS_5               4                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       32      8      7
  7Q GAIN WILD-TYPE     70     34     26
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              32                70
  CLUS_2               8                34
  CLUS_3               7                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q GAIN MUTATED        6      5      8      1     18      2      6
  7Q GAIN WILD-TYPE     21      6     19     12     33     25     11
D14V9, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               6                21
  CLUS_2               5                 6
  CLUS_3               8                19
  CLUS_4               1                12
  CLUS_5              18                33
  CLUS_6               2                25
  CLUS_7               6                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q GAIN MUTATED        5     13      8     12      2      6
  7Q GAIN WILD-TYPE     18     31     11     41     24      2
D14V10, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               5                18
  CLUS_2              13                31
  CLUS_3               8                11
  CLUS_4              12                41
  CLUS_5               2                24
  CLUS_6               6                 2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        4      8      2     11
  8P GAIN WILD-TYPE     22     66     44     27
D15V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               4                22
  CLUS_2               8                66
  CLUS_3               2                44
  CLUS_4              11                27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       10      4      7      3
  8P GAIN WILD-TYPE     35     45     45     34
D15V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              10                35
  CLUS_2               4                45
  CLUS_3               7                45
  CLUS_4               3                34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        8      4      4      0      2
  8P GAIN WILD-TYPE     31     21     16     15     21
D15V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               8                31
  CLUS_2               4                21
  CLUS_3               4                16
  CLUS_4               0                15
  CLUS_5               2                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        8      5      2      1      2
  8P GAIN WILD-TYPE     39     20     14     15     16
D15V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               8                39
  CLUS_2               5                20
  CLUS_3               2                14
  CLUS_4               1                15
  CLUS_5               2                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        4      6      8      4      2
  8P GAIN WILD-TYPE     35     20     35     35     28
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               4                35
  CLUS_2               6                20
  CLUS_3               8                35
  CLUS_4               4                35
  CLUS_5               2                28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       10     10      4
  8P GAIN WILD-TYPE     64     65     24
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              10                64
  CLUS_2              10                65
  CLUS_3               4                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        6      3      6      7      2
  8P GAIN WILD-TYPE     46     44     19     24     20
D15V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               6                46
  CLUS_2               3                44
  CLUS_3               6                19
  CLUS_4               7                24
  CLUS_5               2                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       16      4      4
  8P GAIN WILD-TYPE     86     38     29
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              16                86
  CLUS_2               4                38
  CLUS_3               4                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P GAIN MUTATED        5      2      2      1     10      1      3
  8P GAIN WILD-TYPE     22      9     25     12     41     26     14
D15V9, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               5                22
  CLUS_2               2                 9
  CLUS_3               2                25
  CLUS_4               1                12
  CLUS_5              10                41
  CLUS_6               1                26
  CLUS_7               3                14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P GAIN MUTATED        3      7      2      8      2      2
  8P GAIN WILD-TYPE     20     37     17     45     24      6
D15V10, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                20
  CLUS_2               7                37
  CLUS_3               2                17
  CLUS_4               8                45
  CLUS_5               2                24
  CLUS_6               2                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        6     27      2     13
  8Q GAIN WILD-TYPE     20     47     44     25
D16V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               6                20
  CLUS_2              27                47
  CLUS_3               2                44
  CLUS_4              13                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       18      8     16      5
  8Q GAIN WILD-TYPE     27     41     36     32
D16V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              18                27
  CLUS_2               8                41
  CLUS_3              16                36
  CLUS_4               5                32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED       14      7      6      3      6
  8Q GAIN WILD-TYPE     25     18     14     12     17
D16V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              14                25
  CLUS_2               7                18
  CLUS_3               6                14
  CLUS_4               3                12
  CLUS_5               6                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED       14      8      3      4      7
  8Q GAIN WILD-TYPE     33     17     13     12     11
D16V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              14                33
  CLUS_2               8                17
  CLUS_3               3                13
  CLUS_4               4                12
  CLUS_5               7                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED        9      7     18      8      4
  8Q GAIN WILD-TYPE     30     19     25     31     26
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               9                30
  CLUS_2               7                19
  CLUS_3              18                25
  CLUS_4               8                31
  CLUS_5               4                26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       19     22      5
  8Q GAIN WILD-TYPE     55     53     23
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              19                55
  CLUS_2              22                53
  CLUS_3               5                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED       16      7     10      9      4
  8Q GAIN WILD-TYPE     36     40     15     22     18
D16V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              16                36
  CLUS_2               7                40
  CLUS_3              10                15
  CLUS_4               9                22
  CLUS_5               4                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       33      8      5
  8Q GAIN WILD-TYPE     69     34     28
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              33                69
  CLUS_2               8                34
  CLUS_3               5                28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q GAIN MUTATED        8      2      6      3     20      3      4
  8Q GAIN WILD-TYPE     19      9     21     10     31     24     13
D16V9, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               8                19
  CLUS_2               2                 9
  CLUS_3               6                21
  CLUS_4               3                10
  CLUS_5              20                31
  CLUS_6               3                24
  CLUS_7               4                13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q GAIN MUTATED        6     17      3     15      3      2
  8Q GAIN WILD-TYPE     17     27     16     38     23      6
D16V10, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               6                17
  CLUS_2              17                27
  CLUS_3               3                16
  CLUS_4              15                38
  CLUS_5               3                23
  CLUS_6               2                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        2      3      0      3
  9P GAIN WILD-TYPE     24     71     46     35
D17V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                24
  CLUS_2               3                71
  CLUS_3               0                46
  CLUS_4               3                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        2      2      2      2
  9P GAIN WILD-TYPE     43     47     50     35
D17V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                43
  CLUS_2               2                47
  CLUS_3               2                50
  CLUS_4               2                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        2      1      0      1      2
  9P GAIN WILD-TYPE     37     24     20     14     21
D17V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                37
  CLUS_2               1                24
  CLUS_3               0                20
  CLUS_4               1                14
  CLUS_5               2                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        1      2      0      2      1
  9P GAIN WILD-TYPE     46     23     16     14     17
D17V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                46
  CLUS_2               2                23
  CLUS_3               0                16
  CLUS_4               2                14
  CLUS_5               1                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        1      1      4      1      1
  9P GAIN WILD-TYPE     38     25     39     38     29
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                38
  CLUS_2               1                25
  CLUS_3               4                39
  CLUS_4               1                38
  CLUS_5               1                29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        2      5      1
  9P GAIN WILD-TYPE     72     70     27
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                72
  CLUS_2               5                70
  CLUS_3               1                27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        2      3      1      2      0
  9P GAIN WILD-TYPE     50     44     24     29     22
D17V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                50
  CLUS_2               3                44
  CLUS_3               1                24
  CLUS_4               2                29
  CLUS_5               0                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        6      1      1
  9P GAIN WILD-TYPE     96     41     32
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               6                96
  CLUS_2               1                41
  CLUS_3               1                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P GAIN MUTATED        1      1      0      1      4      0      1
  9P GAIN WILD-TYPE     26     10     27     12     47     27     16
D17V9, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                26
  CLUS_2               1                10
  CLUS_3               0                27
  CLUS_4               1                12
  CLUS_5               4                47
  CLUS_6               0                27
  CLUS_7               1                16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P GAIN MUTATED        0      4      2      1      0      1
  9P GAIN WILD-TYPE     23     40     17     52     26      7
D17V10, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                23
  CLUS_2               4                40
  CLUS_3               2                17
  CLUS_4               1                52
  CLUS_5               0                26
  CLUS_6               1                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        1      5      0      6
  9Q GAIN WILD-TYPE     25     69     46     32
D18V1, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               1                25
  CLUS_2               5                69
  CLUS_3               0                46
  CLUS_4               6                32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        3      4      4      1
  9Q GAIN WILD-TYPE     42     45     48     36
D18V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                42
  CLUS_2               4                45
  CLUS_3               4                48
  CLUS_4               1                36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED        5      1      1      1      2
  9Q GAIN WILD-TYPE     34     24     19     14     21
D18V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               5                34
  CLUS_2               1                24
  CLUS_3               1                19
  CLUS_4               1                14
  CLUS_5               2                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED        4      2      0      3      1
  9Q GAIN WILD-TYPE     43     23     16     13     17
D18V4, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               4                43
  CLUS_2               2                23
  CLUS_3               0                16
  CLUS_4               3                13
  CLUS_5               1                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED        3      4      4      1      0
  9Q GAIN WILD-TYPE     36     22     39     38     30
D18V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                36
  CLUS_2               4                22
  CLUS_3               4                39
  CLUS_4               1                38
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        5      4      3
  9Q GAIN WILD-TYPE     69     71     25
D18V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               5                69
  CLUS_2               4                71
  CLUS_3               3                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED        3      2      2      3      2
  9Q GAIN WILD-TYPE     49     45     23     28     20
D18V7, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                49
  CLUS_2               2                45
  CLUS_3               2                23
  CLUS_4               3                28
  CLUS_5               2                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        7      1      4
  9Q GAIN WILD-TYPE     95     41     29
D18V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               7                95
  CLUS_2               1                41
  CLUS_3               4                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q GAIN MUTATED        1      1      0      0      6      1      3
  9Q GAIN WILD-TYPE     26     10     27     13     45     26     14
D18V9, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               1                26
  CLUS_2               1                10
  CLUS_3               0                27
  CLUS_4               0                13
  CLUS_5               6                45
  CLUS_6               1                26
  CLUS_7               3                14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q GAIN MUTATED        2      4      1      1      1      3
  9Q GAIN WILD-TYPE     21     40     18     52     25      5
D18V10, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               2                21
  CLUS_2               4                40
  CLUS_3               1                18
  CLUS_4               1                52
  CLUS_5               1                25
  CLUS_6               3                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        1      4      3      2
  10P GAIN WILD-TYPE     25     70     43     36
D19V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                4                 70
  CLUS_3                3                 43
  CLUS_4                2                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        3      2      5      0
  10P GAIN WILD-TYPE     42     47     47     37
D19V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                3                 42
  CLUS_2                2                 47
  CLUS_3                5                 47
  CLUS_4                0                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        6      0      0      0      0
  10P GAIN WILD-TYPE     33     25     20     15     23
D19V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                6                 33
  CLUS_2                0                 25
  CLUS_3                0                 20
  CLUS_4                0                 15
  CLUS_5                0                 23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        6      0      0      0      0
  10P GAIN WILD-TYPE     41     25     16     16     18
D19V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                6                 41
  CLUS_2                0                 25
  CLUS_3                0                 16
  CLUS_4                0                 16
  CLUS_5                0                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        4      2      2      1      0
  10P GAIN WILD-TYPE     35     24     41     38     30
D19V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                4                 35
  CLUS_2                2                 24
  CLUS_3                2                 41
  CLUS_4                1                 38
  CLUS_5                0                 30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        5      3      1
  10P GAIN WILD-TYPE     69     72     27
D19V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                5                 69
  CLUS_2                3                 72
  CLUS_3                1                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        2      0      2      4      1
  10P GAIN WILD-TYPE     50     47     23     27     21
D19V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                 50
  CLUS_2                0                 47
  CLUS_3                2                 23
  CLUS_4                4                 27
  CLUS_5                1                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        5      2      2
  10P GAIN WILD-TYPE     97     40     31
D19V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                5                 97
  CLUS_2                2                 40
  CLUS_3                2                 31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P GAIN MUTATED        2      0      1      0      3      1      1
  10P GAIN WILD-TYPE     25     11     26     13     48     26     16
D19V9, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                0                 11
  CLUS_3                1                 26
  CLUS_4                0                 13
  CLUS_5                3                 48
  CLUS_6                1                 26
  CLUS_7                1                 16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P GAIN MUTATED        3      1      0      2      1      1
  10P GAIN WILD-TYPE     20     43     19     51     25      7
D19V10, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                1                 43
  CLUS_3                0                 19
  CLUS_4                2                 51
  CLUS_5                1                 25
  CLUS_6                1                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        1      6      3      3
  10Q GAIN WILD-TYPE     25     68     43     35
D20V1, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                6                 68
  CLUS_3                3                 43
  CLUS_4                3                 35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        5      3      5      0
  10Q GAIN WILD-TYPE     40     46     47     37
D20V2, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                5                 40
  CLUS_2                3                 46
  CLUS_3                5                 47
  CLUS_4                0                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED        7      0      0      1      1
  10Q GAIN WILD-TYPE     32     25     20     14     22
D20V3, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                7                 32
  CLUS_2                0                 25
  CLUS_3                0                 20
  CLUS_4                1                 14
  CLUS_5                1                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED        7      0      0      1      1
  10Q GAIN WILD-TYPE     40     25     16     15     17
D20V4, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                7                 40
  CLUS_2                0                 25
  CLUS_3                0                 16
  CLUS_4                1                 15
  CLUS_5                1                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED        4      2      3      2      0
  10Q GAIN WILD-TYPE     35     24     40     37     30
D20V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                4                 35
  CLUS_2                2                 24
  CLUS_3                3                 40
  CLUS_4                2                 37
  CLUS_5                0                 30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        7      3      1
  10Q GAIN WILD-TYPE     67     72     27
D20V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                7                 67
  CLUS_2                3                 72
  CLUS_3                1                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED        3      0      3      4      1
  10Q GAIN WILD-TYPE     49     47     22     27     21
D20V7, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                0                 47
  CLUS_3                3                 22
  CLUS_4                4                 27
  CLUS_5                1                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        6      3      2
  10Q GAIN WILD-TYPE     96     39     31
D20V8, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                6                 96
  CLUS_2                3                 39
  CLUS_3                2                 31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q GAIN MUTATED        3      0      0      0      5      1      1
  10Q GAIN WILD-TYPE     24     11     27     13     46     26     16
D20V9, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 24
  CLUS_2                0                 11
  CLUS_3                0                 27
  CLUS_4                0                 13
  CLUS_5                5                 46
  CLUS_6                1                 26
  CLUS_7                1                 16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10Q GAIN MUTATED        2      2      1      3      1      1
  10Q GAIN WILD-TYPE     21     42     18     50     25      7
D20V10, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                2                 42
  CLUS_3                1                 18
  CLUS_4                3                 50
  CLUS_5                1                 25
  CLUS_6                1                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        1      7      0      6
  11P GAIN WILD-TYPE     25     67     46     32
D21V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                7                 67
  CLUS_3                0                 46
  CLUS_4                6                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        6      0      6      2
  11P GAIN WILD-TYPE     39     49     46     35
D21V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                6                 39
  CLUS_2                0                 49
  CLUS_3                6                 46
  CLUS_4                2                 35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        5      2      0      0      4
  11P GAIN WILD-TYPE     34     23     20     15     19
D21V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                 34
  CLUS_2                2                 23
  CLUS_3                0                 20
  CLUS_4                0                 15
  CLUS_5                4                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        4      1      1      1      4
  11P GAIN WILD-TYPE     43     24     15     15     14
D21V4, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                1                 24
  CLUS_3                1                 15
  CLUS_4                1                 15
  CLUS_5                4                 14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        3      0      6      2      3
  11P GAIN WILD-TYPE     36     26     37     37     27
D21V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                3                 36
  CLUS_2                0                 26
  CLUS_3                6                 37
  CLUS_4                2                 37
  CLUS_5                3                 27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        6      6      2
  11P GAIN WILD-TYPE     68     69     26
D21V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                6                 68
  CLUS_2                6                 69
  CLUS_3                2                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        4      4      3      2      1
  11P GAIN WILD-TYPE     48     43     22     29     21
D21V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                4                 43
  CLUS_3                3                 22
  CLUS_4                2                 29
  CLUS_5                1                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        9      2      3
  11P GAIN WILD-TYPE     93     40     30
D21V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                9                 93
  CLUS_2                2                 40
  CLUS_3                3                 30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P GAIN MUTATED        3      1      2      1      6      1      0
  11P GAIN WILD-TYPE     24     10     25     12     45     26     17
D21V9, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                3                 24
  CLUS_2                1                 10
  CLUS_3                2                 25
  CLUS_4                1                 12
  CLUS_5                6                 45
  CLUS_6                1                 26
  CLUS_7                0                 17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P GAIN MUTATED        1      5      1      4      3      0
  11P GAIN WILD-TYPE     22     39     18     49     23      8
D21V10, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 22
  CLUS_2                5                 39
  CLUS_3                1                 18
  CLUS_4                4                 49
  CLUS_5                3                 23
  CLUS_6                0                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        2      9      0      6
  11Q GAIN WILD-TYPE     24     65     46     32
D22V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                9                 65
  CLUS_3                0                 46
  CLUS_4                6                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        5      0      9      3
  11Q GAIN WILD-TYPE     40     49     43     34
D22V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                5                 40
  CLUS_2                0                 49
  CLUS_3                9                 43
  CLUS_4                3                 34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        5      2      0      0      5
  11Q GAIN WILD-TYPE     34     23     20     15     18
D22V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                5                 34
  CLUS_2                2                 23
  CLUS_3                0                 20
  CLUS_4                0                 15
  CLUS_5                5                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        5      1      0      0      6
  11Q GAIN WILD-TYPE     42     24     16     16     12
D22V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                5                 42
  CLUS_2                1                 24
  CLUS_3                0                 16
  CLUS_4                0                 16
  CLUS_5                6                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        3      0      9      2      3
  11Q GAIN WILD-TYPE     36     26     34     37     27
D22V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 36
  CLUS_2                0                 26
  CLUS_3                9                 34
  CLUS_4                2                 37
  CLUS_5                3                 27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        8      7      2
  11Q GAIN WILD-TYPE     66     68     26
D22V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                8                 66
  CLUS_2                7                 68
  CLUS_3                2                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        6      3      3      3      2
  11Q GAIN WILD-TYPE     46     44     22     28     20
D22V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                6                 46
  CLUS_2                3                 44
  CLUS_3                3                 22
  CLUS_4                3                 28
  CLUS_5                2                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       12      2      3
  11Q GAIN WILD-TYPE     90     40     30
D22V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               12                 90
  CLUS_2                2                 40
  CLUS_3                3                 30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q GAIN MUTATED        3      2      1      2      9      0      0
  11Q GAIN WILD-TYPE     24      9     26     11     42     27     17
D22V9, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 24
  CLUS_2                2                  9
  CLUS_3                1                 26
  CLUS_4                2                 11
  CLUS_5                9                 42
  CLUS_6                0                 27
  CLUS_7                0                 17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q GAIN MUTATED        1      9      1      3      3      0
  11Q GAIN WILD-TYPE     22     35     18     50     23      8
D22V10, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 22
  CLUS_2                9                 35
  CLUS_3                1                 18
  CLUS_4                3                 50
  CLUS_5                3                 23
  CLUS_6                0                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        0     20      2     10
  12P GAIN WILD-TYPE     26     54     44     28
D23V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                0                 26
  CLUS_2               20                 54
  CLUS_3                2                 44
  CLUS_4               10                 28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       12      7     13      0
  12P GAIN WILD-TYPE     33     42     39     37
D23V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               12                 33
  CLUS_2                7                 42
  CLUS_3               13                 39
  CLUS_4                0                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED        5      2      4      2      6
  12P GAIN WILD-TYPE     34     23     16     13     17
D23V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                5                 34
  CLUS_2                2                 23
  CLUS_3                4                 16
  CLUS_4                2                 13
  CLUS_5                6                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED        3      3      3      4      6
  12P GAIN WILD-TYPE     44     22     13     12     12
D23V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                3                 22
  CLUS_3                3                 13
  CLUS_4                4                 12
  CLUS_5                6                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED        6      9     12      3      1
  12P GAIN WILD-TYPE     33     17     31     36     29
D23V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                6                 33
  CLUS_2                9                 17
  CLUS_3               12                 31
  CLUS_4                3                 36
  CLUS_5                1                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       11     13      7
  12P GAIN WILD-TYPE     63     62     21
D23V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               11                 63
  CLUS_2               13                 62
  CLUS_3                7                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED       10      3      3     10      5
  12P GAIN WILD-TYPE     42     44     22     21     17
D23V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               10                 42
  CLUS_2                3                 44
  CLUS_3                3                 22
  CLUS_4               10                 21
  CLUS_5                5                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       19      3      9
  12P GAIN WILD-TYPE     83     39     24
D23V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               19                 83
  CLUS_2                3                 39
  CLUS_3                9                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P GAIN MUTATED        4      1      4      0     10      3      8
  12P GAIN WILD-TYPE     23     10     23     13     41     24      9
D23V9, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                1                 10
  CLUS_3                4                 23
  CLUS_4                0                 13
  CLUS_5               10                 41
  CLUS_6                3                 24
  CLUS_7                8                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12P GAIN MUTATED        2     10      2      8      2      6
  12P GAIN WILD-TYPE     21     34     17     45     24      2
D23V10, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                2                 21
  CLUS_2               10                 34
  CLUS_3                2                 17
  CLUS_4                8                 45
  CLUS_5                2                 24
  CLUS_6                6                  2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        0     16      2      6
  12Q GAIN WILD-TYPE     26     58     44     32
D24V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                0                 26
  CLUS_2               16                 58
  CLUS_3                2                 44
  CLUS_4                6                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        9      6      9      0
  12Q GAIN WILD-TYPE     36     43     43     37
D24V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                9                 36
  CLUS_2                6                 43
  CLUS_3                9                 43
  CLUS_4                0                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED        3      1      4      2      5
  12Q GAIN WILD-TYPE     36     24     16     13     18
D24V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                3                 36
  CLUS_2                1                 24
  CLUS_3                4                 16
  CLUS_4                2                 13
  CLUS_5                5                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED        2      2      3      4      4
  12Q GAIN WILD-TYPE     45     23     13     12     14
D24V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                2                 45
  CLUS_2                2                 23
  CLUS_3                3                 13
  CLUS_4                4                 12
  CLUS_5                4                 14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED        5      9      7      2      1
  12Q GAIN WILD-TYPE     34     17     36     37     29
D24V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                5                 34
  CLUS_2                9                 17
  CLUS_3                7                 36
  CLUS_4                2                 37
  CLUS_5                1                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        9      8      7
  12Q GAIN WILD-TYPE     65     67     21
D24V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                9                 65
  CLUS_2                8                 67
  CLUS_3                7                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED        7      3      2      9      3
  12Q GAIN WILD-TYPE     45     44     23     22     19
D24V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                7                 45
  CLUS_2                3                 44
  CLUS_3                2                 23
  CLUS_4                9                 22
  CLUS_5                3                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       14      2      8
  12Q GAIN WILD-TYPE     88     40     25
D24V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               14                 88
  CLUS_2                2                 40
  CLUS_3                8                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q GAIN MUTATED        4      0      1      0      8      3      7
  12Q GAIN WILD-TYPE     23     11     26     13     43     24     10
D24V9, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                0                 11
  CLUS_3                1                 26
  CLUS_4                0                 13
  CLUS_5                8                 43
  CLUS_6                3                 24
  CLUS_7                7                 10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q GAIN MUTATED        1      7      2      5      2      6
  12Q GAIN WILD-TYPE     22     37     17     48     24      2
D24V10, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                1                 22
  CLUS_2                7                 37
  CLUS_3                2                 17
  CLUS_4                5                 48
  CLUS_5                2                 24
  CLUS_6                6                  2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        3     17      3      5
  13Q GAIN WILD-TYPE     23     57     43     33
D25V1, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                 23
  CLUS_2               17                 57
  CLUS_3                3                 43
  CLUS_4                5                 33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        9      7      7      4
  13Q GAIN WILD-TYPE     36     42     45     33
D25V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                9                 36
  CLUS_2                7                 42
  CLUS_3                7                 45
  CLUS_4                4                 33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        4      2      2      2      3
  13Q GAIN WILD-TYPE     35     23     18     13     20
D25V3, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                 35
  CLUS_2                2                 23
  CLUS_3                2                 18
  CLUS_4                2                 13
  CLUS_5                3                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        6      3      1      1      2
  13Q GAIN WILD-TYPE     41     22     15     15     16
D25V4, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                6                 41
  CLUS_2                3                 22
  CLUS_3                1                 15
  CLUS_4                1                 15
  CLUS_5                2                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        6     10      4      1      6
  13Q GAIN WILD-TYPE     33     16     39     38     24
D25V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                6                 33
  CLUS_2               10                 16
  CLUS_3                4                 39
  CLUS_4                1                 38
  CLUS_5                6                 24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        8     13      6
  13Q GAIN WILD-TYPE     66     62     22
D25V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                8                 66
  CLUS_2               13                 62
  CLUS_3                6                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        7      6      2      8      4
  13Q GAIN WILD-TYPE     45     41     23     23     18
D25V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                7                 45
  CLUS_2                6                 41
  CLUS_3                2                 23
  CLUS_4                8                 23
  CLUS_5                4                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       16      3      8
  13Q GAIN WILD-TYPE     86     39     25
D25V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               16                 86
  CLUS_2                3                 39
  CLUS_3                8                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q GAIN MUTATED        4      2      4      2      7      2      5
  13Q GAIN WILD-TYPE     23      9     23     11     44     25     12
D25V9, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                2                  9
  CLUS_3                4                 23
  CLUS_4                2                 11
  CLUS_5                7                 44
  CLUS_6                2                 25
  CLUS_7                5                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q GAIN MUTATED        4      4      5      7      2      4
  13Q GAIN WILD-TYPE     19     40     14     46     24      4
D25V10, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                4                 40
  CLUS_3                5                 14
  CLUS_4                7                 46
  CLUS_5                2                 24
  CLUS_6                4                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        0     15      1     10
  14Q GAIN WILD-TYPE     26     59     45     28
D26V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                 26
  CLUS_2               15                 59
  CLUS_3                1                 45
  CLUS_4               10                 28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        8      5     11      2
  14Q GAIN WILD-TYPE     37     44     41     35
D26V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                8                 37
  CLUS_2                5                 44
  CLUS_3               11                 41
  CLUS_4                2                 35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED        6      2      4      1      5
  14Q GAIN WILD-TYPE     33     23     16     14     18
D26V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                6                 33
  CLUS_2                2                 23
  CLUS_3                4                 16
  CLUS_4                1                 14
  CLUS_5                5                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED        5      3      3      3      4
  14Q GAIN WILD-TYPE     42     22     13     13     14
D26V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                5                 42
  CLUS_2                3                 22
  CLUS_3                3                 13
  CLUS_4                3                 13
  CLUS_5                4                 14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED        4      6     12      1      3
  14Q GAIN WILD-TYPE     35     20     31     38     27
D26V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                 35
  CLUS_2                6                 20
  CLUS_3               12                 31
  CLUS_4                1                 38
  CLUS_5                3                 27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       10     10      6
  14Q GAIN WILD-TYPE     64     65     22
D26V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               10                 64
  CLUS_2               10                 65
  CLUS_3                6                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED       12      4      2      5      3
  14Q GAIN WILD-TYPE     40     43     23     26     19
D26V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               12                 40
  CLUS_2                4                 43
  CLUS_3                2                 23
  CLUS_4                5                 26
  CLUS_5                3                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       17      3      6
  14Q GAIN WILD-TYPE     85     39     27
D26V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               17                 85
  CLUS_2                3                 39
  CLUS_3                6                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q GAIN MUTATED        3      1      4      1      9      4      4
  14Q GAIN WILD-TYPE     24     10     23     12     42     23     13
D26V9, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                3                 24
  CLUS_2                1                 10
  CLUS_3                4                 23
  CLUS_4                1                 12
  CLUS_5                9                 42
  CLUS_6                4                 23
  CLUS_7                4                 13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q GAIN MUTATED        3      9      2      6      2      4
  14Q GAIN WILD-TYPE     20     35     17     47     24      4
D26V10, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                9                 35
  CLUS_3                2                 17
  CLUS_4                6                 47
  CLUS_5                2                 24
  CLUS_6                4                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        2     11      0      2
  15Q GAIN WILD-TYPE     24     63     46     36
D27V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 24
  CLUS_2               11                 63
  CLUS_3                0                 46
  CLUS_4                2                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        3      3      8      0
  15Q GAIN WILD-TYPE     42     46     44     37
D27V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 42
  CLUS_2                3                 46
  CLUS_3                8                 44
  CLUS_4                0                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        5      2      2      0      2
  15Q GAIN WILD-TYPE     34     23     18     15     21
D27V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                5                 34
  CLUS_2                2                 23
  CLUS_3                2                 18
  CLUS_4                0                 15
  CLUS_5                2                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        5      2      1      1      2
  15Q GAIN WILD-TYPE     42     23     15     15     16
D27V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                5                 42
  CLUS_2                2                 23
  CLUS_3                1                 15
  CLUS_4                1                 15
  CLUS_5                2                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        5      3      4      1      1
  15Q GAIN WILD-TYPE     34     23     39     38     29
D27V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                5                 34
  CLUS_2                3                 23
  CLUS_3                4                 39
  CLUS_4                1                 38
  CLUS_5                1                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       10      3      1
  15Q GAIN WILD-TYPE     64     72     27
D27V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               10                 64
  CLUS_2                3                 72
  CLUS_3                1                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        5      1      1      5      2
  15Q GAIN WILD-TYPE     47     46     24     26     20
D27V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                5                 47
  CLUS_2                1                 46
  CLUS_3                1                 24
  CLUS_4                5                 26
  CLUS_5                2                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        9      3      2
  15Q GAIN WILD-TYPE     93     39     31
D27V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                9                 93
  CLUS_2                3                 39
  CLUS_3                2                 31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q GAIN MUTATED        2      0      3      0      8      1      0
  15Q GAIN WILD-TYPE     25     11     24     13     43     26     17
D27V9, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                0                 11
  CLUS_3                3                 24
  CLUS_4                0                 13
  CLUS_5                8                 43
  CLUS_6                1                 26
  CLUS_7                0                 17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q GAIN MUTATED        3      2      3      4      1      1
  15Q GAIN WILD-TYPE     20     42     16     49     25      7
D27V10, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                2                 42
  CLUS_3                3                 16
  CLUS_4                4                 49
  CLUS_5                1                 25
  CLUS_6                1                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        2     15      0      6
  16P GAIN WILD-TYPE     24     59     46     32
D28V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                2                 24
  CLUS_2               15                 59
  CLUS_3                0                 46
  CLUS_4                6                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        9      2     11      1
  16P GAIN WILD-TYPE     36     47     41     36
D28V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                9                 36
  CLUS_2                2                 47
  CLUS_3               11                 41
  CLUS_4                1                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED       12      3      1      1      0
  16P GAIN WILD-TYPE     27     22     19     14     23
D28V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               12                 27
  CLUS_2                3                 22
  CLUS_3                1                 19
  CLUS_4                1                 14
  CLUS_5                0                 23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED       10      3      1      2      1
  16P GAIN WILD-TYPE     37     22     15     14     17
D28V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               10                 37
  CLUS_2                3                 22
  CLUS_3                1                 15
  CLUS_4                2                 14
  CLUS_5                1                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED        8      3      9      3      0
  16P GAIN WILD-TYPE     31     23     34     36     30
D28V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                8                 31
  CLUS_2                3                 23
  CLUS_3                9                 34
  CLUS_4                3                 36
  CLUS_5                0                 30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       11     12      0
  16P GAIN WILD-TYPE     63     63     28
D28V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               11                 63
  CLUS_2               12                 63
  CLUS_3                0                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED        8      3      3      7      2
  16P GAIN WILD-TYPE     44     44     22     24     20
D28V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                8                 44
  CLUS_2                3                 44
  CLUS_3                3                 22
  CLUS_4                7                 24
  CLUS_5                2                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       20      2      1
  16P GAIN WILD-TYPE     82     40     32
D28V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               20                 82
  CLUS_2                2                 40
  CLUS_3                1                 32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P GAIN MUTATED        2      1      4      0     10      5      1
  16P GAIN WILD-TYPE     25     10     23     13     41     22     16
D28V9, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                1                 10
  CLUS_3                4                 23
  CLUS_4                0                 13
  CLUS_5               10                 41
  CLUS_6                5                 22
  CLUS_7                1                 16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P GAIN MUTATED        3      8      5      6      1      0
  16P GAIN WILD-TYPE     20     36     14     47     25      8
D28V10, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                8                 36
  CLUS_3                5                 14
  CLUS_4                6                 47
  CLUS_5                1                 25
  CLUS_6                0                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        1     15      0      7
  16Q GAIN WILD-TYPE     25     59     46     31
D29V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2               15                 59
  CLUS_3                0                 46
  CLUS_4                7                 31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        8      2     12      1
  16Q GAIN WILD-TYPE     37     47     40     36
D29V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                8                 37
  CLUS_2                2                 47
  CLUS_3               12                 40
  CLUS_4                1                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED       11      3      1      1      2
  16Q GAIN WILD-TYPE     28     22     19     14     21
D29V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               11                 28
  CLUS_2                3                 22
  CLUS_3                1                 19
  CLUS_4                1                 14
  CLUS_5                2                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        9      3      1      2      3
  16Q GAIN WILD-TYPE     38     22     15     14     15
D29V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                9                 38
  CLUS_2                3                 22
  CLUS_3                1                 15
  CLUS_4                2                 14
  CLUS_5                3                 15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        8      2     10      3      0
  16Q GAIN WILD-TYPE     31     24     33     36     30
D29V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                8                 31
  CLUS_2                2                 24
  CLUS_3               10                 33
  CLUS_4                3                 36
  CLUS_5                0                 30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       11     12      0
  16Q GAIN WILD-TYPE     63     63     28
D29V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               11                 63
  CLUS_2               12                 63
  CLUS_3                0                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        9      4      3      6      1
  16Q GAIN WILD-TYPE     43     43     22     25     21
D29V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                9                 43
  CLUS_2                4                 43
  CLUS_3                3                 22
  CLUS_4                6                 25
  CLUS_5                1                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       21      2      0
  16Q GAIN WILD-TYPE     81     40     33
D29V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               21                 81
  CLUS_2                2                 40
  CLUS_3                0                 33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q GAIN MUTATED        2      1      5      0     11      4      0
  16Q GAIN WILD-TYPE     25     10     22     13     40     23     17
D29V9, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                1                 10
  CLUS_3                5                 22
  CLUS_4                0                 13
  CLUS_5               11                 40
  CLUS_6                4                 23
  CLUS_7                0                 17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q GAIN MUTATED        4      9      4      6      0      0
  16Q GAIN WILD-TYPE     19     35     15     47     26      8
D29V10, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                9                 35
  CLUS_3                4                 15
  CLUS_4                6                 47
  CLUS_5                0                 26
  CLUS_6                0                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        1      3      3      3
  17P GAIN WILD-TYPE     25     71     43     35
D30V1, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                3                 71
  CLUS_3                3                 43
  CLUS_4                3                 35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        2      6      1      1
  17P GAIN WILD-TYPE     43     43     51     36
D30V2, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                 43
  CLUS_2                6                 43
  CLUS_3                1                 51
  CLUS_4                1                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED        1      1      2      1      1
  17P GAIN WILD-TYPE     38     24     18     14     22
D30V3, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                1                 24
  CLUS_3                2                 18
  CLUS_4                1                 14
  CLUS_5                1                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED        1      2      1      2      0
  17P GAIN WILD-TYPE     46     23     15     14     18
D30V4, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                2                 23
  CLUS_3                1                 15
  CLUS_4                2                 14
  CLUS_5                0                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED        0      6      2      1      1
  17P GAIN WILD-TYPE     39     20     41     38     29
D30V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                6                 20
  CLUS_3                2                 41
  CLUS_4                1                 38
  CLUS_5                1                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        1      3      6
  17P GAIN WILD-TYPE     73     72     22
D30V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 73
  CLUS_2                3                 72
  CLUS_3                6                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED        1      2      0      5      2
  17P GAIN WILD-TYPE     51     45     25     26     20
D30V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                2                 45
  CLUS_3                0                 25
  CLUS_4                5                 26
  CLUS_5                2                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        3      1      6
  17P GAIN WILD-TYPE     99     41     27
D30V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                3                 99
  CLUS_2                1                 41
  CLUS_3                6                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P GAIN MUTATED        1      0      0      1      3      0      5
  17P GAIN WILD-TYPE     26     11     27     12     48     27     12
D30V9, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 26
  CLUS_2                0                 11
  CLUS_3                0                 27
  CLUS_4                1                 12
  CLUS_5                3                 48
  CLUS_6                0                 27
  CLUS_7                5                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P GAIN MUTATED        0      2      1      1      1      5
  17P GAIN WILD-TYPE     23     42     18     52     25      3
D30V10, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 23
  CLUS_2                2                 42
  CLUS_3                1                 18
  CLUS_4                1                 52
  CLUS_5                1                 25
  CLUS_6                5                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        1      7      3      8
  17Q GAIN WILD-TYPE     25     67     43     30
D31V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                7                 67
  CLUS_3                3                 43
  CLUS_4                8                 30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        5      6      7      1
  17Q GAIN WILD-TYPE     40     43     45     36
D31V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                5                 40
  CLUS_2                6                 43
  CLUS_3                7                 45
  CLUS_4                1                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED        4      3      4      1      2
  17Q GAIN WILD-TYPE     35     22     16     14     21
D31V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 35
  CLUS_2                3                 22
  CLUS_3                4                 16
  CLUS_4                1                 14
  CLUS_5                2                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED        4      4      2      2      2
  17Q GAIN WILD-TYPE     43     21     14     14     16
D31V4, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                4                 21
  CLUS_3                2                 14
  CLUS_4                2                 14
  CLUS_5                2                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED        1      6      9      2      1
  17Q GAIN WILD-TYPE     38     20     34     37     29
D31V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                6                 20
  CLUS_3                9                 34
  CLUS_4                2                 37
  CLUS_5                1                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        4      9      6
  17Q GAIN WILD-TYPE     70     66     22
D31V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 70
  CLUS_2                9                 66
  CLUS_3                6                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED        6      4      0      7      2
  17Q GAIN WILD-TYPE     46     43     25     24     20
D31V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                6                 46
  CLUS_2                4                 43
  CLUS_3                0                 25
  CLUS_4                7                 24
  CLUS_5                2                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       12      1      6
  17Q GAIN WILD-TYPE     90     41     27
D31V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               12                 90
  CLUS_2                1                 41
  CLUS_3                6                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q GAIN MUTATED        2      2      3      0      6      1      5
  17Q GAIN WILD-TYPE     25      9     24     13     45     26     12
D31V9, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                2                  9
  CLUS_3                3                 24
  CLUS_4                0                 13
  CLUS_5                6                 45
  CLUS_6                1                 26
  CLUS_7                5                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q GAIN MUTATED        2      8      0      3      1      5
  17Q GAIN WILD-TYPE     21     36     19     50     25      3
D31V10, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                8                 36
  CLUS_3                0                 19
  CLUS_4                3                 50
  CLUS_5                1                 25
  CLUS_6                5                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        4     19      1      5
  18P GAIN WILD-TYPE     22     55     45     33
D32V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                4                 22
  CLUS_2               19                 55
  CLUS_3                1                 45
  CLUS_4                5                 33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        9      4     13      2
  18P GAIN WILD-TYPE     36     45     39     35
D32V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                9                 36
  CLUS_2                4                 45
  CLUS_3               13                 39
  CLUS_4                2                 35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        8      6      3      1      2
  18P GAIN WILD-TYPE     31     19     17     14     21
D32V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                8                 31
  CLUS_2                6                 19
  CLUS_3                3                 17
  CLUS_4                1                 14
  CLUS_5                2                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        6      6      2      4      2
  18P GAIN WILD-TYPE     41     19     14     12     16
D32V4, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                6                 41
  CLUS_2                6                 19
  CLUS_3                2                 14
  CLUS_4                4                 12
  CLUS_5                2                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED       10      4     11      2      1
  18P GAIN WILD-TYPE     29     22     32     37     29
D32V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               10                 29
  CLUS_2                4                 22
  CLUS_3               11                 32
  CLUS_4                2                 37
  CLUS_5                1                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        8     17      3
  18P GAIN WILD-TYPE     66     58     25
D32V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                8                 66
  CLUS_2               17                 58
  CLUS_3                3                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED       10      7      2      8      1
  18P GAIN WILD-TYPE     42     40     23     23     21
D32V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               10                 42
  CLUS_2                7                 40
  CLUS_3                2                 23
  CLUS_4                8                 23
  CLUS_5                1                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       23      2      3
  18P GAIN WILD-TYPE     79     40     30
D32V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               23                 79
  CLUS_2                2                 40
  CLUS_3                3                 30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P GAIN MUTATED        2      3      4      1     10      3      4
  18P GAIN WILD-TYPE     25      8     23     12     41     24     13
D32V9, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                3                  8
  CLUS_3                4                 23
  CLUS_4                1                 12
  CLUS_5               10                 41
  CLUS_6                3                 24
  CLUS_7                4                 13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P GAIN MUTATED        3     11      5      5      0      3
  18P GAIN WILD-TYPE     20     33     14     48     26      5
D32V10, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                3                 20
  CLUS_2               11                 33
  CLUS_3                5                 14
  CLUS_4                5                 48
  CLUS_5                0                 26
  CLUS_6                3                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        3      6      0      4
  18Q GAIN WILD-TYPE     23     68     46     34
D33V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                3                 23
  CLUS_2                6                 68
  CLUS_3                0                 46
  CLUS_4                4                 34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        4      3      4      1
  18Q GAIN WILD-TYPE     41     46     48     36
D33V2, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                4                 41
  CLUS_2                3                 46
  CLUS_3                4                 48
  CLUS_4                1                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        6      2      1      1      1
  18Q GAIN WILD-TYPE     33     23     19     14     22
D33V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                6                 33
  CLUS_2                2                 23
  CLUS_3                1                 19
  CLUS_4                1                 14
  CLUS_5                1                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        4      2      0      4      1
  18Q GAIN WILD-TYPE     43     23     16     12     17
D33V4, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                2                 23
  CLUS_3                0                 16
  CLUS_4                4                 12
  CLUS_5                1                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        4      3      3      1      1
  18Q GAIN WILD-TYPE     35     23     40     38     29
D33V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                4                 35
  CLUS_2                3                 23
  CLUS_3                3                 40
  CLUS_4                1                 38
  CLUS_5                1                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        3      6      3
  18Q GAIN WILD-TYPE     71     69     25
D33V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                3                 71
  CLUS_2                6                 69
  CLUS_3                3                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        1      4      0      6      1
  18Q GAIN WILD-TYPE     51     43     25     25     21
D33V7, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                4                 43
  CLUS_3                0                 25
  CLUS_4                6                 25
  CLUS_5                1                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        9      0      3
  18Q GAIN WILD-TYPE     93     42     30
D33V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                9                 93
  CLUS_2                0                 42
  CLUS_3                3                 30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q GAIN MUTATED        1      2      0      1      4      1      3
  18Q GAIN WILD-TYPE     26      9     27     12     47     26     14
D33V9, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                 26
  CLUS_2                2                  9
  CLUS_3                0                 27
  CLUS_4                1                 12
  CLUS_5                4                 47
  CLUS_6                1                 26
  CLUS_7                3                 14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q GAIN MUTATED        0      3      5      1      0      3
  18Q GAIN WILD-TYPE     23     41     14     52     26      5
D33V10, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                 23
  CLUS_2                3                 41
  CLUS_3                5                 14
  CLUS_4                1                 52
  CLUS_5                0                 26
  CLUS_6                3                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        1     12      0      6
  19P GAIN WILD-TYPE     25     62     46     32
D34V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2               12                 62
  CLUS_3                0                 46
  CLUS_4                6                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        5      5      8      1
  19P GAIN WILD-TYPE     40     44     44     36
D34V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                5                 40
  CLUS_2                5                 44
  CLUS_3                8                 44
  CLUS_4                1                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED        6      1      1      1      2
  19P GAIN WILD-TYPE     33     24     19     14     21
D34V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                6                 33
  CLUS_2                1                 24
  CLUS_3                1                 19
  CLUS_4                1                 14
  CLUS_5                2                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED        5      1      0      3      2
  19P GAIN WILD-TYPE     42     24     16     13     16
D34V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                5                 42
  CLUS_2                1                 24
  CLUS_3                0                 16
  CLUS_4                3                 13
  CLUS_5                2                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED        5      8      5      1      0
  19P GAIN WILD-TYPE     34     18     38     38     30
D34V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                5                 34
  CLUS_2                8                 18
  CLUS_3                5                 38
  CLUS_4                1                 38
  CLUS_5                0                 30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        8      7      4
  19P GAIN WILD-TYPE     66     68     24
D34V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                8                 66
  CLUS_2                7                 68
  CLUS_3                4                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED        4      2      2      7      4
  19P GAIN WILD-TYPE     48     45     23     24     18
D34V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                2                 45
  CLUS_3                2                 23
  CLUS_4                7                 24
  CLUS_5                4                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       11      3      5
  19P GAIN WILD-TYPE     91     39     28
D34V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               11                 91
  CLUS_2                3                 39
  CLUS_3                5                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P GAIN MUTATED        4      2      2      0      5      2      4
  19P GAIN WILD-TYPE     23      9     25     13     46     25     13
D34V9, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                2                  9
  CLUS_3                2                 25
  CLUS_4                0                 13
  CLUS_5                5                 46
  CLUS_6                2                 25
  CLUS_7                4                 13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P GAIN MUTATED        3      4      3      4      1      4
  19P GAIN WILD-TYPE     20     40     16     49     25      4
D34V10, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                4                 40
  CLUS_3                3                 16
  CLUS_4                4                 49
  CLUS_5                1                 25
  CLUS_6                4                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        2     19      0      8
  19Q GAIN WILD-TYPE     24     55     46     30
D35V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                2                 24
  CLUS_2               19                 55
  CLUS_3                0                 46
  CLUS_4                8                 30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        8      7     12      2
  19Q GAIN WILD-TYPE     37     42     40     35
D35V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                8                 37
  CLUS_2                7                 42
  CLUS_3               12                 40
  CLUS_4                2                 35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED        7      2      3      2      3
  19Q GAIN WILD-TYPE     32     23     17     13     20
D35V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                7                 32
  CLUS_2                2                 23
  CLUS_3                3                 17
  CLUS_4                2                 13
  CLUS_5                3                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED        6      3      1      4      3
  19Q GAIN WILD-TYPE     41     22     15     12     15
D35V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                6                 41
  CLUS_2                3                 22
  CLUS_3                1                 15
  CLUS_4                4                 12
  CLUS_5                3                 15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED        5     11      9      3      1
  19Q GAIN WILD-TYPE     34     15     34     36     29
D35V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                5                 34
  CLUS_2               11                 15
  CLUS_3                9                 34
  CLUS_4                3                 36
  CLUS_5                1                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       13     11      5
  19Q GAIN WILD-TYPE     61     64     23
D35V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               13                 61
  CLUS_2               11                 64
  CLUS_3                5                 23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED        9      3      5      8      4
  19Q GAIN WILD-TYPE     43     44     20     23     18
D35V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                9                 43
  CLUS_2                3                 44
  CLUS_3                5                 20
  CLUS_4                8                 23
  CLUS_5                4                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       17      6      6
  19Q GAIN WILD-TYPE     85     36     27
D35V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               17                 85
  CLUS_2                6                 36
  CLUS_3                6                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q GAIN MUTATED        7      3      4      0      8      2      5
  19Q GAIN WILD-TYPE     20      8     23     13     43     25     12
D35V9, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                7                 20
  CLUS_2                3                  8
  CLUS_3                4                 23
  CLUS_4                0                 13
  CLUS_5                8                 43
  CLUS_6                2                 25
  CLUS_7                5                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q GAIN MUTATED        3      8      3      9      2      4
  19Q GAIN WILD-TYPE     20     36     16     44     24      4
D35V10, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                8                 36
  CLUS_3                3                 16
  CLUS_4                9                 44
  CLUS_5                2                 24
  CLUS_6                4                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        2     18      4     12
  20P GAIN WILD-TYPE     24     56     42     26
D36V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                2                 24
  CLUS_2               18                 56
  CLUS_3                4                 42
  CLUS_4               12                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       15      7     10      3
  20P GAIN WILD-TYPE     30     42     42     34
D36V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               15                 30
  CLUS_2                7                 42
  CLUS_3               10                 42
  CLUS_4                3                 34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED       12      4      2      1      7
  20P GAIN WILD-TYPE     27     21     18     14     16
D36V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               12                 27
  CLUS_2                4                 21
  CLUS_3                2                 18
  CLUS_4                1                 14
  CLUS_5                7                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED       10      5      0      4      7
  20P GAIN WILD-TYPE     37     20     16     12     11
D36V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               10                 37
  CLUS_2                5                 20
  CLUS_3                0                 16
  CLUS_4                4                 12
  CLUS_5                7                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED        9      8     11      2      5
  20P GAIN WILD-TYPE     30     18     32     37     25
D36V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                9                 30
  CLUS_2                8                 18
  CLUS_3               11                 32
  CLUS_4                2                 37
  CLUS_5                5                 25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        9     18      8
  20P GAIN WILD-TYPE     65     57     20
D36V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                9                 65
  CLUS_2               18                 57
  CLUS_3                8                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED       10      7      2     11      5
  20P GAIN WILD-TYPE     42     40     23     20     17
D36V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               10                 42
  CLUS_2                7                 40
  CLUS_3                2                 23
  CLUS_4               11                 20
  CLUS_5                5                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       24      2      9
  20P GAIN WILD-TYPE     78     40     24
D36V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               24                 78
  CLUS_2                2                 40
  CLUS_3                9                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P GAIN MUTATED        2      1      3      3     14      5      6
  20P GAIN WILD-TYPE     25     10     24     10     37     22     11
D36V9, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                1                 10
  CLUS_3                3                 24
  CLUS_4                3                 10
  CLUS_5               14                 37
  CLUS_6                5                 22
  CLUS_7                6                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P GAIN MUTATED        2     11      7      5      4      5
  20P GAIN WILD-TYPE     21     33     12     48     22      3
D36V10, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                2                 21
  CLUS_2               11                 33
  CLUS_3                7                 12
  CLUS_4                5                 48
  CLUS_5                4                 22
  CLUS_6                5                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        2     27      4     13
  20Q GAIN WILD-TYPE     24     47     42     25
D37V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                2                 24
  CLUS_2               27                 47
  CLUS_3                4                 42
  CLUS_4               13                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       16     10     15      4
  20Q GAIN WILD-TYPE     29     39     37     33
D37V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               16                 29
  CLUS_2               10                 39
  CLUS_3               15                 37
  CLUS_4                4                 33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED       14      5      2      3      8
  20Q GAIN WILD-TYPE     25     20     18     12     15
D37V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               14                 25
  CLUS_2                5                 20
  CLUS_3                2                 18
  CLUS_4                3                 12
  CLUS_5                8                 15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED       11      6      0      7      8
  20Q GAIN WILD-TYPE     36     19     16      9     10
D37V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               11                 36
  CLUS_2                6                 19
  CLUS_3                0                 16
  CLUS_4                7                  9
  CLUS_5                8                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED       11      8     15      5      5
  20Q GAIN WILD-TYPE     28     18     28     34     25
D37V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               11                 28
  CLUS_2                8                 18
  CLUS_3               15                 28
  CLUS_4                5                 34
  CLUS_5                5                 25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       13     23      8
  20Q GAIN WILD-TYPE     61     52     20
D37V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               13                 61
  CLUS_2               23                 52
  CLUS_3                8                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED       14      8      4     13      5
  20Q GAIN WILD-TYPE     38     39     21     18     17
D37V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               14                 38
  CLUS_2                8                 39
  CLUS_3                4                 21
  CLUS_4               13                 18
  CLUS_5                5                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       31      4      9
  20Q GAIN WILD-TYPE     71     38     24
D37V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               31                 71
  CLUS_2                4                 38
  CLUS_3                9                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q GAIN MUTATED        2      2      5      3     20      5      6
  20Q GAIN WILD-TYPE     25      9     22     10     31     22     11
D37V9, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                2                  9
  CLUS_3                5                 22
  CLUS_4                3                 10
  CLUS_5               20                 31
  CLUS_6                5                 22
  CLUS_7                6                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20Q GAIN MUTATED        4     15      7      8      4      5
  20Q GAIN WILD-TYPE     19     29     12     45     22      3
D37V10, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                4                 19
  CLUS_2               15                 29
  CLUS_3                7                 12
  CLUS_4                8                 45
  CLUS_5                4                 22
  CLUS_6                5                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        5      1      0      1
  22Q GAIN WILD-TYPE     21     73     46     37
D38V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                5                 21
  CLUS_2                1                 73
  CLUS_3                0                 46
  CLUS_4                1                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        0      0      5      1
  22Q GAIN WILD-TYPE     45     49     47     36
D38V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                 45
  CLUS_2                0                 49
  CLUS_3                5                 47
  CLUS_4                1                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        2      2      1      0      1
  22Q GAIN WILD-TYPE     37     23     19     15     22
D38V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                2                 23
  CLUS_3                1                 19
  CLUS_4                0                 15
  CLUS_5                1                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        2      2      0      0      2
  22Q GAIN WILD-TYPE     45     23     16     16     16
D38V4, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                 45
  CLUS_2                2                 23
  CLUS_3                0                 16
  CLUS_4                0                 16
  CLUS_5                2                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        1      0      3      0      2
  22Q GAIN WILD-TYPE     38     26     40     39     28
D38V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                0                 26
  CLUS_3                3                 40
  CLUS_4                0                 39
  CLUS_5                2                 28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        1      5      0
  22Q GAIN WILD-TYPE     73     70     28
D38V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 73
  CLUS_2                5                 70
  CLUS_3                0                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        3      3      0      0      0
  22Q GAIN WILD-TYPE     49     44     25     31     22
D38V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                3                 44
  CLUS_3                0                 25
  CLUS_4                0                 31
  CLUS_5                0                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        6      0      0
  22Q GAIN WILD-TYPE     96     42     33
D38V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                6                 96
  CLUS_2                0                 42
  CLUS_3                0                 33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q GAIN MUTATED        0      1      1      1      3      0      0
  22Q GAIN WILD-TYPE     27     10     26     12     48     27     17
D38V9, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                 27
  CLUS_2                1                 10
  CLUS_3                1                 26
  CLUS_4                1                 12
  CLUS_5                3                 48
  CLUS_6                0                 27
  CLUS_7                0                 17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q GAIN MUTATED        0      4      1      1      0      0
  22Q GAIN WILD-TYPE     23     40     18     52     26      8
D38V10, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                 23
  CLUS_2                4                 40
  CLUS_3                1                 18
  CLUS_4                1                 52
  CLUS_5                0                 26
  CLUS_6                0                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = XP GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED        1      4      1      2
  XP GAIN WILD-TYPE     25     70     45     36
D39V1, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               1                25
  CLUS_2               4                70
  CLUS_3               1                45
  CLUS_4               2                36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED        1      4      3      0
  XP GAIN WILD-TYPE     44     45     49     37
D39V2, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               1                44
  CLUS_2               4                45
  CLUS_3               3                49
  CLUS_4               0                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP GAIN MUTATED        3      0      1      1      1
  XP GAIN WILD-TYPE     36     25     19     14     22
D39V3, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               3                36
  CLUS_2               0                25
  CLUS_3               1                19
  CLUS_4               1                14
  CLUS_5               1                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP GAIN MUTATED        2      0      0      3      1
  XP GAIN WILD-TYPE     45     25     16     13     17
D39V4, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                25
  CLUS_3               0                16
  CLUS_4               3                13
  CLUS_5               1                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP GAIN MUTATED        2      4      2      0      0
  XP GAIN WILD-TYPE     37     22     41     39     30
D39V5, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               2                37
  CLUS_2               4                22
  CLUS_3               2                41
  CLUS_4               0                39
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED        1      3      4
  XP GAIN WILD-TYPE     73     72     24
D39V6, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               1                73
  CLUS_2               3                72
  CLUS_3               4                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP GAIN MUTATED        2      1      0      4      1
  XP GAIN WILD-TYPE     50     46     25     27     21
D39V7, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               2                50
  CLUS_2               1                46
  CLUS_3               0                25
  CLUS_4               4                27
  CLUS_5               1                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED        4      0      4
  XP GAIN WILD-TYPE     98     42     29
D39V8, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               4                98
  CLUS_2               0                42
  CLUS_3               4                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP GAIN MUTATED        0      1      0      0      3      0      4
  XP GAIN WILD-TYPE     27     10     27     13     48     27     13
D39V9, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               0                27
  CLUS_2               1                10
  CLUS_3               0                27
  CLUS_4               0                13
  CLUS_5               3                48
  CLUS_6               0                27
  CLUS_7               4                13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XP GAIN MUTATED        0      2      2      0      0      4
  XP GAIN WILD-TYPE     23     42     17     53     26      4
D39V10, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               0                23
  CLUS_2               2                42
  CLUS_3               2                17
  CLUS_4               0                53
  CLUS_5               0                26
  CLUS_6               4                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        1      8      1      5
  XQ GAIN WILD-TYPE     25     66     45     33
D40V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               1                25
  CLUS_2               8                66
  CLUS_3               1                45
  CLUS_4               5                33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        2      5      6      2
  XQ GAIN WILD-TYPE     43     44     46     35
D40V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2                43
  CLUS_2               5                44
  CLUS_3               6                46
  CLUS_4               2                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        4      0      1      2      4
  XQ GAIN WILD-TYPE     35     25     19     13     19
D40V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               4                35
  CLUS_2               0                25
  CLUS_3               1                19
  CLUS_4               2                13
  CLUS_5               4                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        2      1      1      5      2
  XQ GAIN WILD-TYPE     45     24     15     11     16
D40V4, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2                45
  CLUS_2               1                24
  CLUS_3               1                15
  CLUS_4               5                11
  CLUS_5               2                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        3      5      4      2      1
  XQ GAIN WILD-TYPE     36     21     39     37     29
D40V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               3                36
  CLUS_2               5                21
  CLUS_3               4                39
  CLUS_4               2                37
  CLUS_5               1                29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        3      6      6
  XQ GAIN WILD-TYPE     71     69     22
D40V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               3                71
  CLUS_2               6                69
  CLUS_3               6                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        6      1      0      6      2
  XQ GAIN WILD-TYPE     46     46     25     25     20
D40V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               6                46
  CLUS_2               1                46
  CLUS_3               0                25
  CLUS_4               6                25
  CLUS_5               2                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        7      2      6
  XQ GAIN WILD-TYPE     95     40     27
D40V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               7                95
  CLUS_2               2                40
  CLUS_3               6                27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ GAIN MUTATED        0      0      2      1      7      0      5
  XQ GAIN WILD-TYPE     27     11     25     12     44     27     12
D40V9, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                27
  CLUS_2               0                11
  CLUS_3               2                25
  CLUS_4               1                12
  CLUS_5               7                44
  CLUS_6               0                27
  CLUS_7               5                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ GAIN MUTATED        1      5      1      2      2      4
  XQ GAIN WILD-TYPE     22     39     18     51     24      4
D40V10, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               1                22
  CLUS_2               5                39
  CLUS_3               1                18
  CLUS_4               2                51
  CLUS_5               2                24
  CLUS_6               4                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        2     20      2     10
  1P LOSS WILD-TYPE     24     54     44     28
D41V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               2                24
  CLUS_2              20                54
  CLUS_3               2                44
  CLUS_4              10                28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED       18      7      8      1
  1P LOSS WILD-TYPE     27     42     44     36
D41V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              18                27
  CLUS_2               7                42
  CLUS_3               8                44
  CLUS_4               1                36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED       15      2      2      0      5
  1P LOSS WILD-TYPE     24     23     18     15     18
D41V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              15                24
  CLUS_2               2                23
  CLUS_3               2                18
  CLUS_4               0                15
  CLUS_5               5                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED       15      3      1      1      4
  1P LOSS WILD-TYPE     32     22     15     15     14
D41V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              15                32
  CLUS_2               3                22
  CLUS_3               1                15
  CLUS_4               1                15
  CLUS_5               4                14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED       13      3      9      5      2
  1P LOSS WILD-TYPE     26     23     34     34     28
D41V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              13                26
  CLUS_2               3                23
  CLUS_3               9                34
  CLUS_4               5                34
  CLUS_5               2                28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       11     19      2
  1P LOSS WILD-TYPE     63     56     26
D41V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              11                63
  CLUS_2              19                56
  CLUS_3               2                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED       16      6      3      5      2
  1P LOSS WILD-TYPE     36     41     22     26     20
D41V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              16                36
  CLUS_2               6                41
  CLUS_3               3                22
  CLUS_4               5                26
  CLUS_5               2                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       24      6      2
  1P LOSS WILD-TYPE     78     36     31
D41V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              24                78
  CLUS_2               6                36
  CLUS_3               2                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P LOSS MUTATED        4      1      3      1     16      4      2
  1P LOSS WILD-TYPE     23     10     24     12     35     23     15
D41V9, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               4                23
  CLUS_2               1                10
  CLUS_3               3                24
  CLUS_4               1                12
  CLUS_5              16                35
  CLUS_6               4                23
  CLUS_7               2                15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P LOSS MUTATED        6     11      4      8      0      2
  1P LOSS WILD-TYPE     17     33     15     45     26      6
D41V10, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               6                17
  CLUS_2              11                33
  CLUS_3               4                15
  CLUS_4               8                45
  CLUS_5               0                26
  CLUS_6               2                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        0      5      0      3
  1Q LOSS WILD-TYPE     26     69     46     35
D42V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               0                26
  CLUS_2               5                69
  CLUS_3               0                46
  CLUS_4               3                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        2      3      3      0
  1Q LOSS WILD-TYPE     43     46     49     37
D42V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               2                43
  CLUS_2               3                46
  CLUS_3               3                49
  CLUS_4               0                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        2      1      0      0      2
  1Q LOSS WILD-TYPE     37     24     20     15     21
D42V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               2                37
  CLUS_2               1                24
  CLUS_3               0                20
  CLUS_4               0                15
  CLUS_5               2                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        3      1      0      0      1
  1Q LOSS WILD-TYPE     44     24     16     16     17
D42V4, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                44
  CLUS_2               1                24
  CLUS_3               0                16
  CLUS_4               0                16
  CLUS_5               1                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        2      2      3      1      0
  1Q LOSS WILD-TYPE     37     24     40     38     30
D42V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               2                37
  CLUS_2               2                24
  CLUS_3               3                40
  CLUS_4               1                38
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        2      4      2
  1Q LOSS WILD-TYPE     72     71     26
D42V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               2                72
  CLUS_2               4                71
  CLUS_3               2                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        1      4      1      2      0
  1Q LOSS WILD-TYPE     51     43     24     29     22
D42V7, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               1                51
  CLUS_2               4                43
  CLUS_3               1                24
  CLUS_4               2                29
  CLUS_5               0                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        5      1      2
  1Q LOSS WILD-TYPE     97     41     31
D42V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               5                97
  CLUS_2               1                41
  CLUS_3               2                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q LOSS MUTATED        0      0      1      0      3      2      1
  1Q LOSS WILD-TYPE     27     11     26     13     48     25     16
D42V9, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               0                27
  CLUS_2               0                11
  CLUS_3               1                26
  CLUS_4               0                13
  CLUS_5               3                48
  CLUS_6               2                25
  CLUS_7               1                16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q LOSS MUTATED        1      3      0      1      0      2
  1Q LOSS WILD-TYPE     22     41     19     52     26      6
D42V10, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               1                22
  CLUS_2               3                41
  CLUS_3               0                19
  CLUS_4               1                52
  CLUS_5               0                26
  CLUS_6               2                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = 2P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        3      5      1      1
  2P LOSS WILD-TYPE     23     69     45     37
D43V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               3                23
  CLUS_2               5                69
  CLUS_3               1                45
  CLUS_4               1                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        0      4      4      2
  2P LOSS WILD-TYPE     45     45     48     35
D43V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               0                45
  CLUS_2               4                45
  CLUS_3               4                48
  CLUS_4               2                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED        2      0      0      0      1
  2P LOSS WILD-TYPE     37     25     20     15     22
D43V3, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                37
  CLUS_2               0                25
  CLUS_3               0                20
  CLUS_4               0                15
  CLUS_5               1                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED        1      0      0      1      1
  2P LOSS WILD-TYPE     46     25     16     15     17
D43V4, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                46
  CLUS_2               0                25
  CLUS_3               0                16
  CLUS_4               1                15
  CLUS_5               1                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED        3      2      1      2      2
  2P LOSS WILD-TYPE     36     24     42     37     28
D43V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               3                36
  CLUS_2               2                24
  CLUS_3               1                42
  CLUS_4               2                37
  CLUS_5               2                28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        2      5      3
  2P LOSS WILD-TYPE     72     70     25
D43V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                72
  CLUS_2               5                70
  CLUS_3               3                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED        1      1      2      5      1
  2P LOSS WILD-TYPE     51     46     23     26     21
D43V7, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                51
  CLUS_2               1                46
  CLUS_3               2                23
  CLUS_4               5                26
  CLUS_5               1                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        5      2      3
  2P LOSS WILD-TYPE     97     40     30
D43V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5                97
  CLUS_2               2                40
  CLUS_3               3                30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P LOSS MUTATED        0      1      2      1      4      0      2
  2P LOSS WILD-TYPE     27     10     25     12     47     27     15
D43V9, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               0                27
  CLUS_2               1                10
  CLUS_3               2                25
  CLUS_4               1                12
  CLUS_5               4                47
  CLUS_6               0                27
  CLUS_7               2                15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P LOSS MUTATED        0      2      3      2      1      2
  2P LOSS WILD-TYPE     23     42     16     51     25      6
D43V10, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               0                23
  CLUS_2               2                42
  CLUS_3               3                16
  CLUS_4               2                51
  CLUS_5               1                25
  CLUS_6               2                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = 2Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        1      2      0      1
  2Q LOSS WILD-TYPE     25     72     46     37
D44V1, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                25
  CLUS_2               2                72
  CLUS_3               0                46
  CLUS_4               1                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        0      2      2      0
  2Q LOSS WILD-TYPE     45     47     50     37
D44V2, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               0                45
  CLUS_2               2                47
  CLUS_3               2                50
  CLUS_4               0                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED        1      0      0      0      0
  2Q LOSS WILD-TYPE     38     25     20     15     23
D44V3, multiclass
[1] "Remove cluster labels:" "2Q LOSS MUTATED"       
clus
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                1               121 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IN        TCGA-3A-A9IU        TCGA-3A-A9IX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-3A-A9IZ        TCGA-3E-AAAZ        TCGA-F2-6879        TCGA-F2-6880 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A4P5        TCGA-FB-A545 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FB-AAPZ        TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FZ-5924        TCGA-FZ-5926        TCGA-H6-A45N        TCGA-H8-A6C1 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HV-A5A6        TCGA-HZ-7918        TCGA-HZ-7919        TCGA-HZ-7920 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924        TCGA-HZ-7925 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HZ-8001        TCGA-HZ-8002        TCGA-HZ-8003        TCGA-HZ-8005 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HZ-8315        TCGA-HZ-8519        TCGA-HZ-8638        TCGA-HZ-A4BH 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7646        TCGA-IB-7647 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7888 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891        TCGA-IB-7893 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS        TCGA-IB-AAUU 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-L1-A7W4        TCGA-LB-A7SX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-M8-A5N4        TCGA-OE-A75W 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-Q3-AA2A        TCGA-RB-A7B8 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-RB-AA9M        TCGA-S4-A8RM        TCGA-S4-A8RO        TCGA-S4-A8RP 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-US-A774        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-Z5-AAPL 
"2Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED        0      0      0      1      0
  2Q LOSS WILD-TYPE     47     25     16     15     18
D44V4, multiclass
[1] "Remove cluster labels:" "2Q LOSS MUTATED"       
clus
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                1               121 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IN        TCGA-3A-A9IU        TCGA-3A-A9IX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-3A-A9IZ        TCGA-3E-AAAZ        TCGA-F2-6879        TCGA-F2-6880 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A4P5        TCGA-FB-A545 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FB-AAPZ        TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FZ-5924        TCGA-FZ-5926        TCGA-H6-A45N        TCGA-H8-A6C1 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HV-A5A6        TCGA-HZ-7918        TCGA-HZ-7919        TCGA-HZ-7920 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924        TCGA-HZ-7925 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HZ-8001        TCGA-HZ-8002        TCGA-HZ-8003        TCGA-HZ-8005 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HZ-8315        TCGA-HZ-8519        TCGA-HZ-8638        TCGA-HZ-A4BH 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7646        TCGA-IB-7647 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7888 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891        TCGA-IB-7893 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST        TCGA-IB-A6UF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IB-A7LX        TCGA-IB-A7M4        TCGA-IB-AAUM        TCGA-IB-AAUN 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IB-AAUO        TCGA-IB-AAUP        TCGA-IB-AAUS        TCGA-IB-AAUU 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IB-AAUV        TCGA-IB-AAUW        TCGA-L1-A7W4        TCGA-LB-A7SX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-LB-A8F3        TCGA-LB-A9Q5        TCGA-M8-A5N4        TCGA-OE-A75W 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-Q3-AA2A        TCGA-RB-A7B8 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-RB-AA9M        TCGA-S4-A8RM        TCGA-S4-A8RO        TCGA-S4-A8RP 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-US-A774        TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-US-A77J        TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-XN-A8T5        TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-Z5-AAPL 
"2Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED        1      2      1      0      0
  2Q LOSS WILD-TYPE     38     24     42     39     30
D44V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                38
  CLUS_2               2                24
  CLUS_3               1                42
  CLUS_4               0                39
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        0      2      2
  2Q LOSS WILD-TYPE     74     73     26
D44V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               0                74
  CLUS_2               2                73
  CLUS_3               2                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED        0      0      0      4      0
  2Q LOSS WILD-TYPE     52     47     25     27     22
D44V7, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               0                52
  CLUS_2               0                47
  CLUS_3               0                25
  CLUS_4               4                27
  CLUS_5               0                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        2      0      2
  2Q LOSS WILD-TYPE    100     42     31
D44V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               2               100
  CLUS_2               0                42
  CLUS_3               2                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q LOSS MUTATED        0      1      0      0      2      0      1
  2Q LOSS WILD-TYPE     27     10     27     13     49     27     16
D44V9, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               0                27
  CLUS_2               1                10
  CLUS_3               0                27
  CLUS_4               0                13
  CLUS_5               2                49
  CLUS_6               0                27
  CLUS_7               1                16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2Q LOSS MUTATED        0      1      1      0      0      2
  2Q LOSS WILD-TYPE     23     43     18     53     26      6
D44V10, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               0                23
  CLUS_2               1                43
  CLUS_3               1                18
  CLUS_4               0                53
  CLUS_5               0                26
  CLUS_6               2                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        9     14      4      9
  3P LOSS WILD-TYPE     17     60     42     29
D45V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               9                17
  CLUS_2              14                60
  CLUS_3               4                42
  CLUS_4               9                29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED       14      8     11      3
  3P LOSS WILD-TYPE     31     41     41     34
D45V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              14                31
  CLUS_2               8                41
  CLUS_3              11                41
  CLUS_4               3                34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED       13      2      3      2      6
  3P LOSS WILD-TYPE     26     23     17     13     17
D45V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              13                26
  CLUS_2               2                23
  CLUS_3               3                17
  CLUS_4               2                13
  CLUS_5               6                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED       11      3      2      4      6
  3P LOSS WILD-TYPE     36     22     14     12     12
D45V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              11                36
  CLUS_2               3                22
  CLUS_3               2                14
  CLUS_4               4                12
  CLUS_5               6                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED       12      5     10      6      2
  3P LOSS WILD-TYPE     27     21     33     33     28
D45V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              12                27
  CLUS_2               5                21
  CLUS_3              10                33
  CLUS_4               6                33
  CLUS_5               2                28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       14     16      5
  3P LOSS WILD-TYPE     60     59     23
D45V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              14                60
  CLUS_2              16                59
  CLUS_3               5                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED       14      4      4      8      5
  3P LOSS WILD-TYPE     38     43     21     23     17
D45V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              14                38
  CLUS_2               4                43
  CLUS_3               4                21
  CLUS_4               8                23
  CLUS_5               5                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       24      5      6
  3P LOSS WILD-TYPE     78     37     27
D45V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              24                78
  CLUS_2               5                37
  CLUS_3               6                27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P LOSS MUTATED        5      2      4      2     13      4      4
  3P LOSS WILD-TYPE     22      9     23     11     38     23     13
D45V9, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               5                22
  CLUS_2               2                 9
  CLUS_3               4                23
  CLUS_4               2                11
  CLUS_5              13                38
  CLUS_6               4                23
  CLUS_7               4                13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3P LOSS MUTATED        8      9      3      8      4      2
  3P LOSS WILD-TYPE     15     35     16     45     22      6
D45V10, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               8                15
  CLUS_2               9                35
  CLUS_3               3                16
  CLUS_4               8                45
  CLUS_5               4                22
  CLUS_6               2                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        4      6      2      7
  3Q LOSS WILD-TYPE     22     68     44     31
D46V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               4                22
  CLUS_2               6                68
  CLUS_3               2                44
  CLUS_4               7                31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        6      7      4      2
  3Q LOSS WILD-TYPE     39     42     48     35
D46V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               6                39
  CLUS_2               7                42
  CLUS_3               4                48
  CLUS_4               2                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED       10      1      0      1      0
  3Q LOSS WILD-TYPE     29     24     20     14     23
D46V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              10                29
  CLUS_2               1                24
  CLUS_3               0                20
  CLUS_4               1                14
  CLUS_5               0                23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        9      1      0      2      0
  3Q LOSS WILD-TYPE     38     24     16     14     18
D46V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               9                38
  CLUS_2               1                24
  CLUS_3               0                16
  CLUS_4               2                14
  CLUS_5               0                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        7      3      3      4      1
  3Q LOSS WILD-TYPE     32     23     40     35     29
D46V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7                32
  CLUS_2               3                23
  CLUS_3               3                40
  CLUS_4               4                35
  CLUS_5               1                29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        9      6      3
  3Q LOSS WILD-TYPE     65     69     25
D46V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               9                65
  CLUS_2               6                69
  CLUS_3               3                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        6      2      4      6      0
  3Q LOSS WILD-TYPE     46     45     21     25     22
D46V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               6                46
  CLUS_2               2                45
  CLUS_3               4                21
  CLUS_4               6                25
  CLUS_5               0                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       11      4      3
  3Q LOSS WILD-TYPE     91     38     30
D46V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              11                91
  CLUS_2               4                38
  CLUS_3               3                30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q LOSS MUTATED        3      0      2      1      8      0      4
  3Q LOSS WILD-TYPE     24     11     25     12     43     27     13
D46V9, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                24
  CLUS_2               0                11
  CLUS_3               2                25
  CLUS_4               1                12
  CLUS_5               8                43
  CLUS_6               0                27
  CLUS_7               4                13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q LOSS MUTATED        4      3      3      5      0      3
  3Q LOSS WILD-TYPE     19     41     16     48     26      5
D46V10, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               4                19
  CLUS_2               3                41
  CLUS_3               3                16
  CLUS_4               5                48
  CLUS_5               0                26
  CLUS_6               3                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = 4P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        3     14      4      4
  4P LOSS WILD-TYPE     23     60     42     34
D47V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               3                23
  CLUS_2              14                60
  CLUS_3               4                42
  CLUS_4               4                34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       10      1     10      4
  4P LOSS WILD-TYPE     35     48     42     33
D47V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              10                35
  CLUS_2               1                48
  CLUS_3              10                42
  CLUS_4               4                33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        8      3      4      0      2
  4P LOSS WILD-TYPE     31     22     16     15     21
D47V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               8                31
  CLUS_2               3                22
  CLUS_3               4                16
  CLUS_4               0                15
  CLUS_5               2                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        8      3      3      1      2
  4P LOSS WILD-TYPE     39     22     13     15     16
D47V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               8                39
  CLUS_2               3                22
  CLUS_3               3                13
  CLUS_4               1                15
  CLUS_5               2                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        5      2     13      2      2
  4P LOSS WILD-TYPE     34     24     30     37     28
D47V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5                34
  CLUS_2               2                24
  CLUS_3              13                30
  CLUS_4               2                37
  CLUS_5               2                28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        7     15      2
  4P LOSS WILD-TYPE     67     60     26
D47V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               7                67
  CLUS_2              15                60
  CLUS_3               2                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        4      9      1      7      3
  4P LOSS WILD-TYPE     48     38     24     24     19
D47V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               4                48
  CLUS_2               9                38
  CLUS_3               1                24
  CLUS_4               7                24
  CLUS_5               3                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       20      1      3
  4P LOSS WILD-TYPE     82     41     30
D47V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              20                82
  CLUS_2               1                41
  CLUS_3               3                30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P LOSS MUTATED        1      2      3      1      8      6      2
  4P LOSS WILD-TYPE     26      9     24     12     43     21     15
D47V9, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               1                26
  CLUS_2               2                 9
  CLUS_3               3                24
  CLUS_4               1                12
  CLUS_5               8                43
  CLUS_6               6                21
  CLUS_7               2                15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P LOSS MUTATED        3      9      5      4      2      0
  4P LOSS WILD-TYPE     20     35     14     49     24      8
D47V10, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               9                35
  CLUS_3               5                14
  CLUS_4               4                49
  CLUS_5               2                24
  CLUS_6               0                 8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = 4Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        1     13      5      5
  4Q LOSS WILD-TYPE     25     61     41     33
D48V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                25
  CLUS_2              13                61
  CLUS_3               5                41
  CLUS_4               5                33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       10      1      9      4
  4Q LOSS WILD-TYPE     35     48     43     33
D48V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              10                35
  CLUS_2               1                48
  CLUS_3               9                43
  CLUS_4               4                33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED        6      4      4      0      3
  4Q LOSS WILD-TYPE     33     21     16     15     20
D48V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               6                33
  CLUS_2               4                21
  CLUS_3               4                16
  CLUS_4               0                15
  CLUS_5               3                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED        7      3      3      0      4
  4Q LOSS WILD-TYPE     40     22     13     16     14
D48V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               7                40
  CLUS_2               3                22
  CLUS_3               3                13
  CLUS_4               0                16
  CLUS_5               4                14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED        4      3     11      1      4
  4Q LOSS WILD-TYPE     35     23     32     38     26
D48V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               4                35
  CLUS_2               3                23
  CLUS_3              11                32
  CLUS_4               1                38
  CLUS_5               4                26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        6     13      4
  4Q LOSS WILD-TYPE     68     62     24
D48V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               6                68
  CLUS_2              13                62
  CLUS_3               4                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED        4      9      1      5      4
  4Q LOSS WILD-TYPE     48     38     24     26     18
D48V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               4                48
  CLUS_2               9                38
  CLUS_3               1                24
  CLUS_4               5                26
  CLUS_5               4                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       17      0      6
  4Q LOSS WILD-TYPE     85     42     27
D48V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              17                85
  CLUS_2               0                42
  CLUS_3               6                27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q LOSS MUTATED        1      1      3      1      7      7      2
  4Q LOSS WILD-TYPE     26     10     24     12     44     20     15
D48V9, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                26
  CLUS_2               1                10
  CLUS_3               3                24
  CLUS_4               1                12
  CLUS_5               7                44
  CLUS_6               7                20
  CLUS_7               2                15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4Q LOSS MUTATED        3      8      4      2      5      0
  4Q LOSS WILD-TYPE     20     36     15     51     21      8
D48V10, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               8                36
  CLUS_3               4                15
  CLUS_4               2                51
  CLUS_5               5                21
  CLUS_6               0                 8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        1      5      1      2
  5P LOSS WILD-TYPE     25     69     45     36
D49V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                25
  CLUS_2               5                69
  CLUS_3               1                45
  CLUS_4               2                36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        3      2      3      1
  5P LOSS WILD-TYPE     42     47     49     36
D49V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                42
  CLUS_2               2                47
  CLUS_3               3                49
  CLUS_4               1                36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        3      2      1      0      1
  5P LOSS WILD-TYPE     36     23     19     15     22
D49V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                36
  CLUS_2               2                23
  CLUS_3               1                19
  CLUS_4               0                15
  CLUS_5               1                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        3      1      1      0      2
  5P LOSS WILD-TYPE     44     24     15     16     16
D49V4, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                44
  CLUS_2               1                24
  CLUS_3               1                15
  CLUS_4               0                16
  CLUS_5               2                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        2      0      4      2      1
  5P LOSS WILD-TYPE     37     26     39     37     29
D49V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               2                37
  CLUS_2               0                26
  CLUS_3               4                39
  CLUS_4               2                37
  CLUS_5               1                29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        6      3      0
  5P LOSS WILD-TYPE     68     72     28
D49V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               6                68
  CLUS_2               3                72
  CLUS_3               0                28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        3      3      2      1      0
  5P LOSS WILD-TYPE     49     44     23     30     22
D49V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                49
  CLUS_2               3                44
  CLUS_3               2                23
  CLUS_4               1                30
  CLUS_5               0                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        6      2      1
  5P LOSS WILD-TYPE     96     40     32
D49V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               6                96
  CLUS_2               2                40
  CLUS_3               1                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P LOSS MUTATED        1      0      3      0      2      1      1
  5P LOSS WILD-TYPE     26     11     24     13     49     26     16
D49V9, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                26
  CLUS_2               0                11
  CLUS_3               3                24
  CLUS_4               0                13
  CLUS_5               2                49
  CLUS_6               1                26
  CLUS_7               1                16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P LOSS MUTATED        2      2      0      3      1      0
  5P LOSS WILD-TYPE     21     42     19     50     25      8
D49V10, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               2                21
  CLUS_2               2                42
  CLUS_3               0                19
  CLUS_4               3                50
  CLUS_5               1                25
  CLUS_6               0                 8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        1      7      1      2
  5Q LOSS WILD-TYPE     25     67     45     36
D50V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                25
  CLUS_2               7                67
  CLUS_3               1                45
  CLUS_4               2                36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        4      1      4      2
  5Q LOSS WILD-TYPE     41     48     48     35
D50V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                41
  CLUS_2               1                48
  CLUS_3               4                48
  CLUS_4               2                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        1      2      1      0      2
  5Q LOSS WILD-TYPE     38     23     19     15     21
D50V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                38
  CLUS_2               2                23
  CLUS_3               1                19
  CLUS_4               0                15
  CLUS_5               2                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        1      1      1      0      3
  5Q LOSS WILD-TYPE     46     24     15     16     15
D50V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                46
  CLUS_2               1                24
  CLUS_3               1                15
  CLUS_4               0                16
  CLUS_5               3                15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        3      0      4      2      2
  5Q LOSS WILD-TYPE     36     26     39     37     28
D50V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               3                36
  CLUS_2               0                26
  CLUS_3               4                39
  CLUS_4               2                37
  CLUS_5               2                28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        5      6      0
  5Q LOSS WILD-TYPE     69     69     28
D50V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               5                69
  CLUS_2               6                69
  CLUS_3               0                28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        2      5      2      2      0
  5Q LOSS WILD-TYPE     50     42     23     29     22
D50V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               2                50
  CLUS_2               5                42
  CLUS_3               2                23
  CLUS_4               2                29
  CLUS_5               0                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        8      2      1
  5Q LOSS WILD-TYPE     94     40     32
D50V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               8                94
  CLUS_2               2                40
  CLUS_3               1                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q LOSS MUTATED        2      0      2      1      2      1      1
  5Q LOSS WILD-TYPE     25     11     25     12     49     26     16
D50V9, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               2                25
  CLUS_2               0                11
  CLUS_3               2                25
  CLUS_4               1                12
  CLUS_5               2                49
  CLUS_6               1                26
  CLUS_7               1                16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q LOSS MUTATED        2      2      2      2      1      0
  5Q LOSS WILD-TYPE     21     42     17     51     25      8
D50V10, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               2                21
  CLUS_2               2                42
  CLUS_3               2                17
  CLUS_4               2                51
  CLUS_5               1                25
  CLUS_6               0                 8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       14     30      0     20
  6P LOSS WILD-TYPE     12     44     46     18
D51V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              14                12
  CLUS_2              30                44
  CLUS_3               0                46
  CLUS_4              20                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       22      9     26      6
  6P LOSS WILD-TYPE     23     40     26     31
D51V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              22                23
  CLUS_2               9                40
  CLUS_3              26                26
  CLUS_4               6                31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED       20      5      5      4      7
  6P LOSS WILD-TYPE     19     20     15     11     16
D51V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              20                19
  CLUS_2               5                20
  CLUS_3               5                15
  CLUS_4               4                11
  CLUS_5               7                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED       21      7      2      5      6
  6P LOSS WILD-TYPE     26     18     14     11     12
D51V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              21                26
  CLUS_2               7                18
  CLUS_3               2                14
  CLUS_4               5                11
  CLUS_5               6                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED       17      7     23      8      5
  6P LOSS WILD-TYPE     22     19     20     31     25
D51V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              17                22
  CLUS_2               7                19
  CLUS_3              23                20
  CLUS_4               8                31
  CLUS_5               5                25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       21     34      5
  6P LOSS WILD-TYPE     53     41     23
D51V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              21                53
  CLUS_2              34                41
  CLUS_3               5                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED       23     14      8     11      4
  6P LOSS WILD-TYPE     29     33     17     20     18
D51V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              23                29
  CLUS_2              14                33
  CLUS_3               8                17
  CLUS_4              11                20
  CLUS_5               4                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       46      7      7
  6P LOSS WILD-TYPE     56     35     26
D51V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              46                56
  CLUS_2               7                35
  CLUS_3               7                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P LOSS MUTATED        8      5      6      3     24      8      6
  6P LOSS WILD-TYPE     19      6     21     10     27     19     11
D51V9, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               8                19
  CLUS_2               5                 6
  CLUS_3               6                21
  CLUS_4               3                10
  CLUS_5              24                27
  CLUS_6               8                19
  CLUS_7               6                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P LOSS MUTATED        9     26      7     12      3      3
  6P LOSS WILD-TYPE     14     18     12     41     23      5
D51V10, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               9                14
  CLUS_2              26                18
  CLUS_3               7                12
  CLUS_4              12                41
  CLUS_5               3                23
  CLUS_6               3                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       18     43      0     21
  6Q LOSS WILD-TYPE      8     31     46     17
D52V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              18                 8
  CLUS_2              43                31
  CLUS_3               0                46
  CLUS_4              21                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       26     10     36      9
  6Q LOSS WILD-TYPE     19     39     16     28
D52V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              26                19
  CLUS_2              10                39
  CLUS_3              36                16
  CLUS_4               9                28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED       24      7     10      3     11
  6Q LOSS WILD-TYPE     15     18     10     12     12
D52V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              24                15
  CLUS_2               7                18
  CLUS_3              10                10
  CLUS_4               3                12
  CLUS_5              11                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED       24     10      6      5     10
  6Q LOSS WILD-TYPE     23     15     10     11      8
D52V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              24                23
  CLUS_2              10                15
  CLUS_3               6                10
  CLUS_4               5                11
  CLUS_5              10                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED       22      7     31     10      7
  6Q LOSS WILD-TYPE     17     19     12     29     23
D52V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              22                17
  CLUS_2               7                19
  CLUS_3              31                12
  CLUS_4              10                29
  CLUS_5               7                23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       29     43      5
  6Q LOSS WILD-TYPE     45     32     23
D52V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              29                45
  CLUS_2              43                32
  CLUS_3               5                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED       34     16     10     13      4
  6Q LOSS WILD-TYPE     18     31     15     18     18
D52V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              34                18
  CLUS_2              16                31
  CLUS_3              10                15
  CLUS_4              13                18
  CLUS_5               4                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       60     10      7
  6Q LOSS WILD-TYPE     42     32     26
D52V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              60                42
  CLUS_2              10                32
  CLUS_3               7                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q LOSS MUTATED        9      7      8      4     36      7      6
  6Q LOSS WILD-TYPE     18      4     19      9     15     20     11
D52V9, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               9                18
  CLUS_2               7                 4
  CLUS_3               8                19
  CLUS_4               4                 9
  CLUS_5              36                15
  CLUS_6               7                20
  CLUS_7               6                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q LOSS MUTATED       13     29      9     20      3      3
  6Q LOSS WILD-TYPE     10     15     10     33     23      5
D52V10, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              13                10
  CLUS_2              29                15
  CLUS_3               9                10
  CLUS_4              20                33
  CLUS_5               3                23
  CLUS_6               3                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = 7Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        0      3      0      0
  7Q LOSS WILD-TYPE     26     71     46     38
D53V1, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                26
  CLUS_2               3                71
  CLUS_3               0                46
  CLUS_4               0                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        0      1      2      0
  7Q LOSS WILD-TYPE     45     48     50     37
D53V2, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                45
  CLUS_2               1                48
  CLUS_3               2                50
  CLUS_4               0                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        0      1      1      0      0
  7Q LOSS WILD-TYPE     39     24     19     15     23
D53V3, multiclass
[1] "Remove cluster labels:" "7Q LOSS MUTATED"       
clus
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                2               120 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IN        TCGA-3A-A9IU        TCGA-3A-A9IX 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-3A-A9IZ        TCGA-3E-AAAZ        TCGA-F2-6879        TCGA-F2-6880 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A4P5        TCGA-FB-A545 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FB-AAPZ        TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FZ-5924        TCGA-FZ-5926        TCGA-H6-A45N        TCGA-H8-A6C1 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HZ-7918        TCGA-HZ-7919        TCGA-HZ-7920        TCGA-HZ-7923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HZ-7924        TCGA-HZ-7925        TCGA-HZ-8001        TCGA-HZ-8002 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8519 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HZ-8638        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7654        TCGA-IB-7885        TCGA-IB-7886 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-8126        TCGA-IB-8127 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IB-AAUM        TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IB-AAUS        TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-L1-A7W4        TCGA-LB-A7SX        TCGA-LB-A8F3        TCGA-LB-A9Q5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-M8-A5N4        TCGA-OE-A75W        TCGA-PZ-A5RE        TCGA-Q3-A5QY 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RM 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-S4-A8RO        TCGA-S4-A8RP        TCGA-US-A774        TCGA-US-A776 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        0      1      0      0      1
  7Q LOSS WILD-TYPE     47     24     16     16     17
D53V4, multiclass
[1] "Remove cluster labels:" "7Q LOSS MUTATED"       
clus
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                2               120 
       TCGA-2J-AAB4        TCGA-2J-AAB8        TCGA-2J-AAB9        TCGA-2J-AABA 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-2J-AABF        TCGA-2J-AABH        TCGA-2J-AABK        TCGA-2J-AABO 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-2J-AABR        TCGA-2L-AAQA        TCGA-2L-AAQI        TCGA-2L-AAQJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-2L-AAQL        TCGA-2L-AAQM        TCGA-3A-A9I5        TCGA-3A-A9IB 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-3A-A9IH        TCGA-3A-A9IN        TCGA-3A-A9IU        TCGA-3A-A9IX 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-3A-A9IZ        TCGA-3E-AAAZ        TCGA-F2-6879        TCGA-F2-6880 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A8YN        TCGA-FB-A4P5        TCGA-FB-A545 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-AAPP        TCGA-FB-AAPQ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FB-AAPZ        TCGA-FB-AAQ1        TCGA-FB-AAQ6        TCGA-FZ-5919 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5921        TCGA-FZ-5922        TCGA-FZ-5923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FZ-5924        TCGA-FZ-5926        TCGA-H6-A45N        TCGA-H8-A6C1 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HZ-7918        TCGA-HZ-7919        TCGA-HZ-7920        TCGA-HZ-7923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HZ-7924        TCGA-HZ-7925        TCGA-HZ-8001        TCGA-HZ-8002 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8519 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HZ-8638        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7654        TCGA-IB-7885        TCGA-IB-7886 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-8126        TCGA-IB-8127 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UF        TCGA-IB-A7LX        TCGA-IB-A7M4 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IB-AAUM        TCGA-IB-AAUN        TCGA-IB-AAUO        TCGA-IB-AAUP 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IB-AAUS        TCGA-IB-AAUU        TCGA-IB-AAUV        TCGA-IB-AAUW 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-L1-A7W4        TCGA-LB-A7SX        TCGA-LB-A8F3        TCGA-LB-A9Q5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-M8-A5N4        TCGA-OE-A75W        TCGA-PZ-A5RE        TCGA-Q3-A5QY 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-Q3-AA2A        TCGA-RB-A7B8        TCGA-RB-AA9M        TCGA-S4-A8RM 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-S4-A8RO        TCGA-S4-A8RP        TCGA-US-A774        TCGA-US-A776 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-US-A779        TCGA-US-A77E        TCGA-US-A77G        TCGA-US-A77J 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-XD-AAUH        TCGA-XD-AAUI        TCGA-XD-AAUL        TCGA-XN-A8T5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-YB-A89D        TCGA-YH-A8SY        TCGA-YY-A8LH        TCGA-Z5-AAPL 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        0      0      1      1      1
  7Q LOSS WILD-TYPE     39     26     42     38     29
D53V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                39
  CLUS_2               0                26
  CLUS_3               1                42
  CLUS_4               1                38
  CLUS_5               1                29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        2      1      0
  7Q LOSS WILD-TYPE     72     74     28
D53V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               2                72
  CLUS_2               1                74
  CLUS_3               0                28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        1      0      1      1      0
  7Q LOSS WILD-TYPE     51     47     24     30     22
D53V7, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                51
  CLUS_2               0                47
  CLUS_3               1                24
  CLUS_4               1                30
  CLUS_5               0                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        2      1      0
  7Q LOSS WILD-TYPE    100     41     33
D53V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               2               100
  CLUS_2               1                41
  CLUS_3               0                33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q LOSS MUTATED        1      0      1      0      1      0      0
  7Q LOSS WILD-TYPE     26     11     26     13     50     27     17
D53V9, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                26
  CLUS_2               0                11
  CLUS_3               1                26
  CLUS_4               0                13
  CLUS_5               1                50
  CLUS_6               0                27
  CLUS_7               0                17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q LOSS MUTATED        0      1      0      2      0      0
  7Q LOSS WILD-TYPE     23     43     19     51     26      8
D53V10, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                23
  CLUS_2               1                43
  CLUS_3               0                19
  CLUS_4               2                51
  CLUS_5               0                26
  CLUS_6               0                 8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        2     36      3      1
  8P LOSS WILD-TYPE     24     38     43     37
D54V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               2                24
  CLUS_2              36                38
  CLUS_3               3                43
  CLUS_4               1                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED       10      7     21      4
  8P LOSS WILD-TYPE     35     42     31     33
D54V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              10                35
  CLUS_2               7                42
  CLUS_3              21                31
  CLUS_4               4                33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED       13      3      2      2      5
  8P LOSS WILD-TYPE     26     22     18     13     18
D54V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              13                26
  CLUS_2               3                22
  CLUS_3               2                18
  CLUS_4               2                13
  CLUS_5               5                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED       12      3      1      3      6
  8P LOSS WILD-TYPE     35     22     15     13     12
D54V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              12                35
  CLUS_2               3                22
  CLUS_3               1                15
  CLUS_4               3                13
  CLUS_5               6                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED       11      5     17      5      3
  8P LOSS WILD-TYPE     28     21     26     34     27
D54V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              11                28
  CLUS_2               5                21
  CLUS_3              17                26
  CLUS_4               5                34
  CLUS_5               3                27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       12     26      3
  8P LOSS WILD-TYPE     62     49     25
D54V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              12                62
  CLUS_2              26                49
  CLUS_3               3                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED       16      9      3      8      5
  8P LOSS WILD-TYPE     36     38     22     23     17
D54V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              16                36
  CLUS_2               9                38
  CLUS_3               3                22
  CLUS_4               8                23
  CLUS_5               5                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       32      4      5
  8P LOSS WILD-TYPE     70     38     28
D54V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              32                70
  CLUS_2               4                38
  CLUS_3               5                28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P LOSS MUTATED        4      4      3      3     19      4      3
  8P LOSS WILD-TYPE     23      7     24     10     32     23     14
D54V9, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               4                23
  CLUS_2               4                 7
  CLUS_3               3                24
  CLUS_4               3                10
  CLUS_5              19                32
  CLUS_6               4                23
  CLUS_7               3                14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P LOSS MUTATED        8     14      6      8      2      2
  8P LOSS WILD-TYPE     15     30     13     45     24      6
D54V10, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               8                15
  CLUS_2              14                30
  CLUS_3               6                13
  CLUS_4               8                45
  CLUS_5               2                24
  CLUS_6               2                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        0     14      2      0
  8Q LOSS WILD-TYPE     26     60     44     38
D55V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                26
  CLUS_2              14                60
  CLUS_3               2                44
  CLUS_4               0                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        4      2      8      2
  8Q LOSS WILD-TYPE     41     47     44     35
D55V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               4                41
  CLUS_2               2                47
  CLUS_3               8                44
  CLUS_4               2                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        6      0      0      0      2
  8Q LOSS WILD-TYPE     33     25     20     15     21
D55V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               6                33
  CLUS_2               0                25
  CLUS_3               0                20
  CLUS_4               0                15
  CLUS_5               2                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        5      0      0      1      2
  8Q LOSS WILD-TYPE     42     25     16     15     16
D55V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               5                42
  CLUS_2               0                25
  CLUS_3               0                16
  CLUS_4               1                15
  CLUS_5               2                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        6      2      5      2      1
  8Q LOSS WILD-TYPE     33     24     38     37     29
D55V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               6                33
  CLUS_2               2                24
  CLUS_3               5                38
  CLUS_4               2                37
  CLUS_5               1                29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        6      9      1
  8Q LOSS WILD-TYPE     68     66     27
D55V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               6                68
  CLUS_2               9                66
  CLUS_3               1                27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        5      4      0      5      2
  8Q LOSS WILD-TYPE     47     43     25     26     20
D55V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               5                47
  CLUS_2               4                43
  CLUS_3               0                25
  CLUS_4               5                26
  CLUS_5               2                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       12      2      2
  8Q LOSS WILD-TYPE     90     40     31
D55V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              12                90
  CLUS_2               2                40
  CLUS_3               2                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q LOSS MUTATED        2      2      0      1      7      1      2
  8Q LOSS WILD-TYPE     25      9     27     12     44     26     15
D55V9, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               2                25
  CLUS_2               2                 9
  CLUS_3               0                27
  CLUS_4               1                12
  CLUS_5               7                44
  CLUS_6               1                26
  CLUS_7               2                15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q LOSS MUTATED        3      2      5      4      0      1
  8Q LOSS WILD-TYPE     20     42     14     49     26      7
D55V10, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               2                42
  CLUS_3               5                14
  CLUS_4               4                49
  CLUS_5               0                26
  CLUS_6               1                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       11     43      3     17
  9P LOSS WILD-TYPE     15     31     43     21
D56V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              11                15
  CLUS_2              43                31
  CLUS_3               3                43
  CLUS_4              17                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       20     12     32      9
  9P LOSS WILD-TYPE     25     37     20     28
D56V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              20                25
  CLUS_2              12                37
  CLUS_3              32                20
  CLUS_4               9                28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED       20     13      8      1     10
  9P LOSS WILD-TYPE     19     12     12     14     13
D56V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              20                19
  CLUS_2              13                12
  CLUS_3               8                12
  CLUS_4               1                14
  CLUS_5              10                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED       19     13      8      2     10
  9P LOSS WILD-TYPE     28     12      8     14      8
D56V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              19                28
  CLUS_2              13                12
  CLUS_3               8                 8
  CLUS_4               2                14
  CLUS_5              10                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED       20      4     24     10     10
  9P LOSS WILD-TYPE     19     22     19     29     20
D56V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              20                19
  CLUS_2               4                22
  CLUS_3              24                19
  CLUS_4              10                29
  CLUS_5              10                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       30     33      5
  9P LOSS WILD-TYPE     44     42     23
D56V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              30                44
  CLUS_2              33                42
  CLUS_3               5                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED       29     14      9     10      6
  9P LOSS WILD-TYPE     23     33     16     21     16
D56V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              29                23
  CLUS_2              14                33
  CLUS_3               9                16
  CLUS_4              10                21
  CLUS_5               6                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       48     12      8
  9P LOSS WILD-TYPE     54     30     25
D56V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              48                54
  CLUS_2              12                30
  CLUS_3               8                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P LOSS MUTATED        9      4     11      3     28      9      3
  9P LOSS WILD-TYPE     18      7     16     10     23     18     14
D56V9, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               9                18
  CLUS_2               4                 7
  CLUS_3              11                16
  CLUS_4               3                10
  CLUS_5              28                23
  CLUS_6               9                18
  CLUS_7               3                14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P LOSS MUTATED       12     23      6     18      8      0
  9P LOSS WILD-TYPE     11     21     13     35     18      8
D56V10, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              12                11
  CLUS_2              23                21
  CLUS_3               6                13
  CLUS_4              18                35
  CLUS_5               8                18
  CLUS_6               0                 8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        6     21      3     13
  9Q LOSS WILD-TYPE     20     53     43     25
D57V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               6                20
  CLUS_2              21                53
  CLUS_3               3                43
  CLUS_4              13                25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       11     10     17      4
  9Q LOSS WILD-TYPE     34     39     35     33
D57V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              11                34
  CLUS_2              10                39
  CLUS_3              17                35
  CLUS_4               4                33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED        8      9      5      2      7
  9Q LOSS WILD-TYPE     31     16     15     13     16
D57V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               8                31
  CLUS_2               9                16
  CLUS_3               5                15
  CLUS_4               2                13
  CLUS_5               7                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED        7     10      6      3      5
  9Q LOSS WILD-TYPE     40     15     10     13     13
D57V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               7                40
  CLUS_2              10                15
  CLUS_3               6                10
  CLUS_4               3                13
  CLUS_5               5                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED       11      2     11      8      6
  9Q LOSS WILD-TYPE     28     24     32     31     24
D57V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              11                28
  CLUS_2               2                24
  CLUS_3              11                32
  CLUS_4               8                31
  CLUS_5               6                24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       19     15      4
  9Q LOSS WILD-TYPE     55     60     24
D57V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              19                55
  CLUS_2              15                60
  CLUS_3               4                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED       17      7      5      7      2
  9Q LOSS WILD-TYPE     35     40     20     24     20
D57V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              17                35
  CLUS_2               7                40
  CLUS_3               5                20
  CLUS_4               7                24
  CLUS_5               2                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       26      8      4
  9Q LOSS WILD-TYPE     76     34     29
D57V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              26                76
  CLUS_2               8                34
  CLUS_3               4                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q LOSS MUTATED        6      1      6      1     13      9      1
  9Q LOSS WILD-TYPE     21     10     21     12     38     18     16
D57V9, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               6                21
  CLUS_2               1                10
  CLUS_3               6                21
  CLUS_4               1                12
  CLUS_5              13                38
  CLUS_6               9                18
  CLUS_7               1                16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q LOSS MUTATED        6     14      2     10      5      0
  9Q LOSS WILD-TYPE     17     30     17     43     21      8
D57V10, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               6                17
  CLUS_2              14                30
  CLUS_3               2                17
  CLUS_4              10                43
  CLUS_5               5                21
  CLUS_6               0                 8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       10     15      0     11
  10P LOSS WILD-TYPE     16     59     46     27
D58V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               10                 16
  CLUS_2               15                 59
  CLUS_3                0                 46
  CLUS_4               11                 27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       11      7     12      5
  10P LOSS WILD-TYPE     34     42     40     32
D58V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               11                 34
  CLUS_2                7                 42
  CLUS_3               12                 40
  CLUS_4                5                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        8      3      3      2      5
  10P LOSS WILD-TYPE     31     22     17     13     18
D58V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                8                 31
  CLUS_2                3                 22
  CLUS_3                3                 17
  CLUS_4                2                 13
  CLUS_5                5                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        6      4      3      3      5
  10P LOSS WILD-TYPE     41     21     13     13     13
D58V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                6                 41
  CLUS_2                4                 21
  CLUS_3                3                 13
  CLUS_4                3                 13
  CLUS_5                5                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        3      5     17      6      3
  10P LOSS WILD-TYPE     36     21     26     33     27
D58V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                 36
  CLUS_2                5                 21
  CLUS_3               17                 26
  CLUS_4                6                 33
  CLUS_5                3                 27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       10     19      5
  10P LOSS WILD-TYPE     64     56     23
D58V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               10                 64
  CLUS_2               19                 56
  CLUS_3                5                 23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        8      9      4      9      4
  10P LOSS WILD-TYPE     44     38     21     22     18
D58V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                8                 44
  CLUS_2                9                 38
  CLUS_3                4                 21
  CLUS_4                9                 22
  CLUS_5                4                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       24      4      6
  10P LOSS WILD-TYPE     78     38     27
D58V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               24                 78
  CLUS_2                4                 38
  CLUS_3                6                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P LOSS MUTATED        2      5      2      2     13      3      6
  10P LOSS WILD-TYPE     25      6     25     11     38     24     11
D58V9, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                5                  6
  CLUS_3                2                 25
  CLUS_4                2                 11
  CLUS_5               13                 38
  CLUS_6                3                 24
  CLUS_7                6                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P LOSS MUTATED        3     12      6      8      1      3
  10P LOSS WILD-TYPE     20     32     13     45     25      5
D58V10, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                 20
  CLUS_2               12                 32
  CLUS_3                6                 13
  CLUS_4                8                 45
  CLUS_5                1                 25
  CLUS_6                3                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        9     13      0      8
  10Q LOSS WILD-TYPE     17     61     46     30
D59V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                9                 17
  CLUS_2               13                 61
  CLUS_3                0                 46
  CLUS_4                8                 30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        7      7     10      5
  10Q LOSS WILD-TYPE     38     42     42     32
D59V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                7                 38
  CLUS_2                7                 42
  CLUS_3               10                 42
  CLUS_4                5                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        7      3      3      1      4
  10Q LOSS WILD-TYPE     32     22     17     14     19
D59V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                7                 32
  CLUS_2                3                 22
  CLUS_3                3                 17
  CLUS_4                1                 14
  CLUS_5                4                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        3      4      3      4      4
  10Q LOSS WILD-TYPE     44     21     13     12     14
D59V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                4                 21
  CLUS_3                3                 13
  CLUS_4                4                 12
  CLUS_5                4                 14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        4      4     14      4      3
  10Q LOSS WILD-TYPE     35     22     29     35     27
D59V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                4                 35
  CLUS_2                4                 22
  CLUS_3               14                 29
  CLUS_4                4                 35
  CLUS_5                3                 27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        6     19      4
  10Q LOSS WILD-TYPE     68     56     24
D59V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                6                 68
  CLUS_2               19                 56
  CLUS_3                4                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        4      9      3     10      3
  10Q LOSS WILD-TYPE     48     38     22     21     19
D59V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                9                 38
  CLUS_3                3                 22
  CLUS_4               10                 21
  CLUS_5                3                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       20      4      5
  10Q LOSS WILD-TYPE     82     38     28
D59V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               20                 82
  CLUS_2                4                 38
  CLUS_3                5                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q LOSS MUTATED        1      4      4      2     10      1      6
  10Q LOSS WILD-TYPE     26      7     23     11     41     26     11
D59V9, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                1                 26
  CLUS_2                4                  7
  CLUS_3                4                 23
  CLUS_4                2                 11
  CLUS_5               10                 41
  CLUS_6                1                 26
  CLUS_7                6                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10Q LOSS MUTATED        4      8      6      7      0      3
  10Q LOSS WILD-TYPE     19     36     13     46     26      5
D59V10, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                8                 36
  CLUS_3                6                 13
  CLUS_4                7                 46
  CLUS_5                0                 26
  CLUS_6                3                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        1      8      1      7
  11P LOSS WILD-TYPE     25     66     45     31
D60V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                8                 66
  CLUS_3                1                 45
  CLUS_4                7                 31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        5      8      4      0
  11P LOSS WILD-TYPE     40     41     48     37
D60V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                5                 40
  CLUS_2                8                 41
  CLUS_3                4                 48
  CLUS_4                0                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        6      0      0      1      3
  11P LOSS WILD-TYPE     33     25     20     14     20
D60V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                6                 33
  CLUS_2                0                 25
  CLUS_3                0                 20
  CLUS_4                1                 14
  CLUS_5                3                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        5      0      0      3      2
  11P LOSS WILD-TYPE     42     25     16     13     16
D60V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                5                 42
  CLUS_2                0                 25
  CLUS_3                0                 16
  CLUS_4                3                 13
  CLUS_5                2                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        3      3      5      5      0
  11P LOSS WILD-TYPE     36     23     38     34     30
D60V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                3                 36
  CLUS_2                3                 23
  CLUS_3                5                 38
  CLUS_4                5                 34
  CLUS_5                0                 30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        7      6      3
  11P LOSS WILD-TYPE     67     69     25
D60V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                7                 67
  CLUS_2                6                 69
  CLUS_3                3                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        3      1      3      8      1
  11P LOSS WILD-TYPE     49     46     22     23     21
D60V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                1                 46
  CLUS_3                3                 22
  CLUS_4                8                 23
  CLUS_5                1                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        7      5      4
  11P LOSS WILD-TYPE     95     37     29
D60V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                7                 95
  CLUS_2                5                 37
  CLUS_3                4                 29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P LOSS MUTATED        2      0      3      0      7      0      3
  11P LOSS WILD-TYPE     25     11     24     13     44     27     14
D60V9, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                0                 11
  CLUS_3                3                 24
  CLUS_4                0                 13
  CLUS_5                7                 44
  CLUS_6                0                 27
  CLUS_7                3                 14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P LOSS MUTATED        0      3      3      6      0      3
  11P LOSS WILD-TYPE     23     41     16     47     26      5
D60V10, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                0                 23
  CLUS_2                3                 41
  CLUS_3                3                 16
  CLUS_4                6                 47
  CLUS_5                0                 26
  CLUS_6                3                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        1      8      1      5
  11Q LOSS WILD-TYPE     25     66     45     33
D61V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                8                 66
  CLUS_3                1                 45
  CLUS_4                5                 33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        5      6      4      0
  11Q LOSS WILD-TYPE     40     43     48     37
D61V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                5                 40
  CLUS_2                6                 43
  CLUS_3                4                 48
  CLUS_4                0                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        3      0      0      2      1
  11Q LOSS WILD-TYPE     36     25     20     13     22
D61V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                3                 36
  CLUS_2                0                 25
  CLUS_3                0                 20
  CLUS_4                2                 13
  CLUS_5                1                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        0      0      0      5      1
  11Q LOSS WILD-TYPE     47     25     16     11     17
D61V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                0                 47
  CLUS_2                0                 25
  CLUS_3                0                 16
  CLUS_4                5                 11
  CLUS_5                1                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        4      3      2      4      1
  11Q LOSS WILD-TYPE     35     23     41     35     29
D61V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                4                 35
  CLUS_2                3                 23
  CLUS_3                2                 41
  CLUS_4                4                 35
  CLUS_5                1                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        4      7      3
  11Q LOSS WILD-TYPE     70     68     25
D61V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                4                 70
  CLUS_2                7                 68
  CLUS_3                3                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        1      1      2      9      1
  11Q LOSS WILD-TYPE     51     46     23     22     21
D61V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                1                 46
  CLUS_3                2                 23
  CLUS_4                9                 22
  CLUS_5                1                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        6      4      4
  11Q LOSS WILD-TYPE     96     38     29
D61V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                6                 96
  CLUS_2                4                 38
  CLUS_3                4                 29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q LOSS MUTATED        2      0      1      1      5      0      4
  11Q LOSS WILD-TYPE     25     11     26     12     46     27     13
D61V9, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                0                 11
  CLUS_3                1                 26
  CLUS_4                1                 12
  CLUS_5                5                 46
  CLUS_6                0                 27
  CLUS_7                4                 13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q LOSS MUTATED        0      0      5      5      0      3
  11Q LOSS WILD-TYPE     23     44     14     48     26      5
D61V10, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                0                 23
  CLUS_2                0                 44
  CLUS_3                5                 14
  CLUS_4                5                 48
  CLUS_5                0                 26
  CLUS_6                3                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = 12P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        6     10      2      1
  12P LOSS WILD-TYPE     20     64     44     37
D62V1, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                6                 20
  CLUS_2               10                 64
  CLUS_3                2                 44
  CLUS_4                1                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        5      1     10      3
  12P LOSS WILD-TYPE     40     48     42     34
D62V2, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                5                 40
  CLUS_2                1                 48
  CLUS_3               10                 42
  CLUS_4                3                 34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P LOSS MUTATED       11      0      0      0      0
  12P LOSS WILD-TYPE     28     25     20     15     23
D62V3, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               11                 28
  CLUS_2                0                 25
  CLUS_3                0                 20
  CLUS_4                0                 15
  CLUS_5                0                 23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P LOSS MUTATED       11      0      0      0      0
  12P LOSS WILD-TYPE     36     25     16     16     18
D62V4, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               11                 36
  CLUS_2                0                 25
  CLUS_3                0                 16
  CLUS_4                0                 16
  CLUS_5                0                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P LOSS MUTATED        7      1      8      0      2
  12P LOSS WILD-TYPE     32     25     35     39     28
D62V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                7                 32
  CLUS_2                1                 25
  CLUS_3                8                 35
  CLUS_4                0                 39
  CLUS_5                2                 28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        5     13      0
  12P LOSS WILD-TYPE     69     62     28
D62V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                5                 69
  CLUS_2               13                 62
  CLUS_3                0                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P LOSS MUTATED        6      5      1      5      1
  12P LOSS WILD-TYPE     46     42     24     26     21
D62V7, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                6                 46
  CLUS_2                5                 42
  CLUS_3                1                 24
  CLUS_4                5                 26
  CLUS_5                1                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       18      0      0
  12P LOSS WILD-TYPE     84     42     33
D62V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               18                 84
  CLUS_2                0                 42
  CLUS_3                0                 33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P LOSS MUTATED        2      3      1      2      8      1      0
  12P LOSS WILD-TYPE     25      8     26     11     43     26     17
D62V9, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                3                  8
  CLUS_3                1                 26
  CLUS_4                2                 11
  CLUS_5                8                 43
  CLUS_6                1                 26
  CLUS_7                0                 17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12P LOSS MUTATED        6      5      5      1      0      0
  12P LOSS WILD-TYPE     17     39     14     52     26      8
D62V10, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                6                 17
  CLUS_2                5                 39
  CLUS_3                5                 14
  CLUS_4                1                 52
  CLUS_5                0                 26
  CLUS_6                0                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = 12Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        8     14      2      4
  12Q LOSS WILD-TYPE     18     60     44     34
D63V1, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                8                 18
  CLUS_2               14                 60
  CLUS_3                2                 44
  CLUS_4                4                 34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        8      4     13      3
  12Q LOSS WILD-TYPE     37     45     39     34
D63V2, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                8                 37
  CLUS_2                4                 45
  CLUS_3               13                 39
  CLUS_4                3                 34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED       11      1      1      0      2
  12Q LOSS WILD-TYPE     28     24     19     15     21
D63V3, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               11                 28
  CLUS_2                1                 24
  CLUS_3                1                 19
  CLUS_4                0                 15
  CLUS_5                2                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED       10      1      1      0      3
  12Q LOSS WILD-TYPE     37     24     15     16     15
D63V4, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               10                 37
  CLUS_2                1                 24
  CLUS_3                1                 15
  CLUS_4                0                 16
  CLUS_5                3                 15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED        6      2     13      4      1
  12Q LOSS WILD-TYPE     33     24     30     35     29
D63V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                6                 33
  CLUS_2                2                 24
  CLUS_3               13                 30
  CLUS_4                4                 35
  CLUS_5                1                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        8     18      0
  12Q LOSS WILD-TYPE     66     57     28
D63V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                8                 66
  CLUS_2               18                 57
  CLUS_3                0                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED        9      5      4      6      2
  12Q LOSS WILD-TYPE     43     42     21     25     20
D63V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                9                 43
  CLUS_2                5                 42
  CLUS_3                4                 21
  CLUS_4                6                 25
  CLUS_5                2                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       21      4      1
  12Q LOSS WILD-TYPE     81     38     32
D63V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               21                 81
  CLUS_2                4                 38
  CLUS_3                1                 32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q LOSS MUTATED        2      5      4      1     10      1      2
  12Q LOSS WILD-TYPE     25      6     23     12     41     26     15
D63V9, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                5                  6
  CLUS_3                4                 23
  CLUS_4                1                 12
  CLUS_5               10                 41
  CLUS_6                1                 26
  CLUS_7                2                 15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q LOSS MUTATED        4      9      4      8      0      0
  12Q LOSS WILD-TYPE     19     35     15     45     26      8
D63V10, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                9                 35
  CLUS_3                4                 15
  CLUS_4                8                 45
  CLUS_5                0                 26
  CLUS_6                0                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED        4     14      1      1
  13Q LOSS WILD-TYPE     22     60     45     37
D64V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                4                 22
  CLUS_2               14                 60
  CLUS_3                1                 45
  CLUS_4                1                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED        6      2     11      1
  13Q LOSS WILD-TYPE     39     47     41     36
D64V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                6                 39
  CLUS_2                2                 47
  CLUS_3               11                 41
  CLUS_4                1                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED        6      3      2      1      3
  13Q LOSS WILD-TYPE     33     22     18     14     20
D64V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                6                 33
  CLUS_2                3                 22
  CLUS_3                2                 18
  CLUS_4                1                 14
  CLUS_5                3                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED        4      4      1      3      3
  13Q LOSS WILD-TYPE     43     21     15     13     15
D64V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                4                 21
  CLUS_3                1                 15
  CLUS_4                3                 13
  CLUS_5                3                 15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED        5      1     11      1      1
  13Q LOSS WILD-TYPE     34     25     32     38     29
D64V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                5                 34
  CLUS_2                1                 25
  CLUS_3               11                 32
  CLUS_4                1                 38
  CLUS_5                1                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        6     12      1
  13Q LOSS WILD-TYPE     68     63     27
D64V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                6                 68
  CLUS_2               12                 63
  CLUS_3                1                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED        6      6      0      7      0
  13Q LOSS WILD-TYPE     46     41     25     24     22
D64V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                6                 46
  CLUS_2                6                 41
  CLUS_3                0                 25
  CLUS_4                7                 24
  CLUS_5                0                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       17      1      1
  13Q LOSS WILD-TYPE     85     41     32
D64V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               17                 85
  CLUS_2                1                 41
  CLUS_3                1                 32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q LOSS MUTATED        0      1      3      1      8      4      2
  13Q LOSS WILD-TYPE     27     10     24     12     43     23     15
D64V9, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                0                 27
  CLUS_2                1                 10
  CLUS_3                3                 24
  CLUS_4                1                 12
  CLUS_5                8                 43
  CLUS_6                4                 23
  CLUS_7                2                 15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q LOSS MUTATED        1     10      4      3      0      1
  13Q LOSS WILD-TYPE     22     34     15     50     26      7
D64V10, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                1                 22
  CLUS_2               10                 34
  CLUS_3                4                 15
  CLUS_4                3                 50
  CLUS_5                0                 26
  CLUS_6                1                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = 14Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        3      7      4      1
  14Q LOSS WILD-TYPE     23     67     42     37
D65V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                3                 23
  CLUS_2                7                 67
  CLUS_3                4                 42
  CLUS_4                1                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        7      1      6      1
  14Q LOSS WILD-TYPE     38     48     46     36
D65V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                7                 38
  CLUS_2                1                 48
  CLUS_3                6                 46
  CLUS_4                1                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        6      1      1      0      2
  14Q LOSS WILD-TYPE     33     24     19     15     21
D65V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                6                 33
  CLUS_2                1                 24
  CLUS_3                1                 19
  CLUS_4                0                 15
  CLUS_5                2                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        6      1      1      0      2
  14Q LOSS WILD-TYPE     41     24     15     16     16
D65V4, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                6                 41
  CLUS_2                1                 24
  CLUS_3                1                 15
  CLUS_4                0                 16
  CLUS_5                2                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        1      2      8      2      2
  14Q LOSS WILD-TYPE     38     24     35     37     28
D65V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                2                 24
  CLUS_3                8                 35
  CLUS_4                2                 37
  CLUS_5                2                 28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        3     10      2
  14Q LOSS WILD-TYPE     71     65     26
D65V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                3                 71
  CLUS_2               10                 65
  CLUS_3                2                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        3      4      0      5      3
  14Q LOSS WILD-TYPE     49     43     25     26     19
D65V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                4                 43
  CLUS_3                0                 25
  CLUS_4                5                 26
  CLUS_5                3                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       10      1      4
  14Q LOSS WILD-TYPE     92     41     29
D65V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               10                 92
  CLUS_2                1                 41
  CLUS_3                4                 29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q LOSS MUTATED        1      2      0      2      5      3      0
  14Q LOSS WILD-TYPE     26      9     27     11     46     24     17
D65V9, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                1                 26
  CLUS_2                2                  9
  CLUS_3                0                 27
  CLUS_4                2                 11
  CLUS_5                5                 46
  CLUS_6                3                 24
  CLUS_7                0                 17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q LOSS MUTATED        1      4      2      2      4      0
  14Q LOSS WILD-TYPE     22     40     17     51     22      8
D65V10, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                1                 22
  CLUS_2                4                 40
  CLUS_3                2                 17
  CLUS_4                2                 51
  CLUS_5                4                 22
  CLUS_6                0                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = 15Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        2     19      2      7
  15Q LOSS WILD-TYPE     24     55     44     31
D66V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                2                 24
  CLUS_2               19                 55
  CLUS_3                2                 44
  CLUS_4                7                 31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        9      2     14      5
  15Q LOSS WILD-TYPE     36     47     38     32
D66V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                9                 36
  CLUS_2                2                 47
  CLUS_3               14                 38
  CLUS_4                5                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED        8      6      2      1      3
  15Q LOSS WILD-TYPE     31     19     18     14     20
D66V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                8                 31
  CLUS_2                6                 19
  CLUS_3                2                 18
  CLUS_4                1                 14
  CLUS_5                3                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED        6      5      2      2      5
  15Q LOSS WILD-TYPE     41     20     14     14     13
D66V4, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                6                 41
  CLUS_2                5                 20
  CLUS_3                2                 14
  CLUS_4                2                 14
  CLUS_5                5                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED        7      2     15      1      5
  15Q LOSS WILD-TYPE     32     24     28     38     25
D66V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                7                 32
  CLUS_2                2                 24
  CLUS_3               15                 28
  CLUS_4                1                 38
  CLUS_5                5                 25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        8     21      1
  15Q LOSS WILD-TYPE     66     54     27
D66V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                8                 66
  CLUS_2               21                 54
  CLUS_3                1                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED       10     10      3      5      2
  15Q LOSS WILD-TYPE     42     37     22     26     20
D66V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               10                 42
  CLUS_2               10                 37
  CLUS_3                3                 22
  CLUS_4                5                 26
  CLUS_5                2                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       25      2      3
  15Q LOSS WILD-TYPE     77     40     30
D66V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               25                 77
  CLUS_2                2                 40
  CLUS_3                3                 30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q LOSS MUTATED        2      2      4      2     12      4      2
  15Q LOSS WILD-TYPE     25      9     23     11     39     23     15
D66V9, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                2                  9
  CLUS_3                4                 23
  CLUS_4                2                 11
  CLUS_5               12                 39
  CLUS_6                4                 23
  CLUS_7                2                 15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q LOSS MUTATED        3     13      6      4      1      1
  15Q LOSS WILD-TYPE     20     31     13     49     25      7
D66V10, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                3                 20
  CLUS_2               13                 31
  CLUS_3                6                 13
  CLUS_4                4                 49
  CLUS_5                1                 25
  CLUS_6                1                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        2      4      1      3
  16P LOSS WILD-TYPE     24     70     45     35
D67V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                4                 70
  CLUS_3                1                 45
  CLUS_4                3                 35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        1      4      4      1
  16P LOSS WILD-TYPE     44     45     48     36
D67V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                 44
  CLUS_2                4                 45
  CLUS_3                4                 48
  CLUS_4                1                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        0      0      1      1      3
  16P LOSS WILD-TYPE     39     25     19     14     20
D67V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                0                 25
  CLUS_3                1                 19
  CLUS_4                1                 14
  CLUS_5                3                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        0      0      1      1      3
  16P LOSS WILD-TYPE     47     25     15     15     15
D67V4, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 47
  CLUS_2                0                 25
  CLUS_3                1                 15
  CLUS_4                1                 15
  CLUS_5                3                 15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        1      3      4      1      1
  16P LOSS WILD-TYPE     38     23     39     38     29
D67V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                3                 23
  CLUS_3                4                 39
  CLUS_4                1                 38
  CLUS_5                1                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        2      5      3
  16P LOSS WILD-TYPE     72     70     25
D67V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                2                 72
  CLUS_2                5                 70
  CLUS_3                3                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        2      3      1      4      0
  16P LOSS WILD-TYPE     50     44     24     27     22
D67V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                2                 50
  CLUS_2                3                 44
  CLUS_3                1                 24
  CLUS_4                4                 27
  CLUS_5                0                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        6      1      3
  16P LOSS WILD-TYPE     96     41     30
D67V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                6                 96
  CLUS_2                1                 41
  CLUS_3                3                 30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P LOSS MUTATED        1      1      0      1      4      0      2
  16P LOSS WILD-TYPE     26     10     27     12     47     27     15
D67V9, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                 26
  CLUS_2                1                 10
  CLUS_3                0                 27
  CLUS_4                1                 12
  CLUS_5                4                 47
  CLUS_6                0                 27
  CLUS_7                2                 15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P LOSS MUTATED        1      3      1      1      0      3
  16P LOSS WILD-TYPE     22     41     18     52     26      5
D67V10, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                 22
  CLUS_2                3                 41
  CLUS_3                1                 18
  CLUS_4                1                 52
  CLUS_5                0                 26
  CLUS_6                3                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        4      6      1      2
  16Q LOSS WILD-TYPE     22     68     45     36
D68V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                4                 22
  CLUS_2                6                 68
  CLUS_3                1                 45
  CLUS_4                2                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        3      4      5      1
  16Q LOSS WILD-TYPE     42     45     47     36
D68V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                 42
  CLUS_2                4                 45
  CLUS_3                5                 47
  CLUS_4                1                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        1      0      1      1      1
  16Q LOSS WILD-TYPE     38     25     19     14     22
D68V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                0                 25
  CLUS_3                1                 19
  CLUS_4                1                 14
  CLUS_5                1                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        1      0      1      1      1
  16Q LOSS WILD-TYPE     46     25     15     15     17
D68V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                0                 25
  CLUS_3                1                 15
  CLUS_4                1                 15
  CLUS_5                1                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        3      4      4      1      1
  16Q LOSS WILD-TYPE     36     22     39     38     29
D68V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                 36
  CLUS_2                4                 22
  CLUS_3                4                 39
  CLUS_4                1                 38
  CLUS_5                1                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        2      8      3
  16Q LOSS WILD-TYPE     72     67     25
D68V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                2                 72
  CLUS_2                8                 67
  CLUS_3                3                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        2      3      1      6      1
  16Q LOSS WILD-TYPE     50     44     24     25     21
D68V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                2                 50
  CLUS_2                3                 44
  CLUS_3                1                 24
  CLUS_4                6                 25
  CLUS_5                1                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        8      1      4
  16Q LOSS WILD-TYPE     94     41     29
D68V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                8                 94
  CLUS_2                1                 41
  CLUS_3                4                 29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q LOSS MUTATED        1      1      0      1      4      2      3
  16Q LOSS WILD-TYPE     26     10     27     12     47     25     14
D68V9, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                1                 26
  CLUS_2                1                 10
  CLUS_3                0                 27
  CLUS_4                1                 12
  CLUS_5                4                 47
  CLUS_6                2                 25
  CLUS_7                3                 14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q LOSS MUTATED        2      3      2      1      1      3
  16Q LOSS WILD-TYPE     21     41     17     52     25      5
D68V10, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                3                 41
  CLUS_3                2                 17
  CLUS_4                1                 52
  CLUS_5                1                 25
  CLUS_6                3                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       10     51      1     17
  17P LOSS WILD-TYPE     16     23     45     21
D69V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               10                 16
  CLUS_2               51                 23
  CLUS_3                1                 45
  CLUS_4               17                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       27      9     38      5
  17P LOSS WILD-TYPE     18     40     14     32
D69V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               27                 18
  CLUS_2                9                 40
  CLUS_3               38                 14
  CLUS_4                5                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED       26     10      8      5      8
  17P LOSS WILD-TYPE     13     15     12     10     15
D69V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               26                 13
  CLUS_2               10                 15
  CLUS_3                8                 12
  CLUS_4                5                 10
  CLUS_5                8                 15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED       29     10      6      5      7
  17P LOSS WILD-TYPE     18     15     10     11     11
D69V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               29                 18
  CLUS_2               10                 15
  CLUS_3                6                 10
  CLUS_4                5                 11
  CLUS_5                7                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED       26      5     29     11      5
  17P LOSS WILD-TYPE     13     21     14     28     25
D69V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               26                 13
  CLUS_2                5                 21
  CLUS_3               29                 14
  CLUS_4               11                 28
  CLUS_5                5                 25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       37     38      1
  17P LOSS WILD-TYPE     37     37     27
D69V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               37                 37
  CLUS_2               38                 37
  CLUS_3                1                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED       36     13     11     11      5
  17P LOSS WILD-TYPE     16     34     14     20     17
D69V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               36                 16
  CLUS_2               13                 34
  CLUS_3               11                 14
  CLUS_4               11                 20
  CLUS_5                5                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       57     14      5
  17P LOSS WILD-TYPE     45     28     28
D69V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               57                 45
  CLUS_2               14                 28
  CLUS_3                5                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P LOSS MUTATED       10      3     11      0     37     11      3
  17P LOSS WILD-TYPE     17      8     16     13     14     16     14
D69V9, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               10                 17
  CLUS_2                3                  8
  CLUS_3               11                 16
  CLUS_4                0                 13
  CLUS_5               37                 14
  CLUS_6               11                 16
  CLUS_7                3                 14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P LOSS MUTATED       12     30      6     22      5      0
  17P LOSS WILD-TYPE     11     14     13     31     21      8
D69V10, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               12                 11
  CLUS_2               30                 14
  CLUS_3                6                 13
  CLUS_4               22                 31
  CLUS_5                5                 21
  CLUS_6                0                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = 17Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        1     12      0      6
  17Q LOSS WILD-TYPE     25     62     46     32
D70V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                1                 25
  CLUS_2               12                 62
  CLUS_3                0                 46
  CLUS_4                6                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        8      3      6      2
  17Q LOSS WILD-TYPE     37     46     46     35
D70V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                8                 37
  CLUS_2                3                 46
  CLUS_3                6                 46
  CLUS_4                2                 35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED        9      1      0      3      1
  17Q LOSS WILD-TYPE     30     24     20     12     22
D70V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                9                 30
  CLUS_2                1                 24
  CLUS_3                0                 20
  CLUS_4                3                 12
  CLUS_5                1                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED        9      1      1      3      0
  17Q LOSS WILD-TYPE     38     24     15     13     18
D70V4, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                9                 38
  CLUS_2                1                 24
  CLUS_3                1                 15
  CLUS_4                3                 13
  CLUS_5                0                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED        8      2      2      3      2
  17Q LOSS WILD-TYPE     31     24     41     36     28
D70V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                8                 31
  CLUS_2                2                 24
  CLUS_3                2                 41
  CLUS_4                3                 36
  CLUS_5                2                 28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        8      8      1
  17Q LOSS WILD-TYPE     66     67     27
D70V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                8                 66
  CLUS_2                8                 67
  CLUS_3                1                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED        6      2      4      3      2
  17Q LOSS WILD-TYPE     46     45     21     28     20
D70V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                6                 46
  CLUS_2                2                 45
  CLUS_3                4                 21
  CLUS_4                3                 28
  CLUS_5                2                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       12      3      2
  17Q LOSS WILD-TYPE     90     39     31
D70V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               12                 90
  CLUS_2                3                 39
  CLUS_3                2                 31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q LOSS MUTATED        2      0      2      1      8      3      1
  17Q LOSS WILD-TYPE     25     11     25     12     43     24     16
D70V9, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                0                 11
  CLUS_3                2                 25
  CLUS_4                1                 12
  CLUS_5                8                 43
  CLUS_6                3                 24
  CLUS_7                1                 16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q LOSS MUTATED        2      4      4      5      2      0
  17Q LOSS WILD-TYPE     21     40     15     48     24      8
D70V10, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                4                 40
  CLUS_3                4                 15
  CLUS_4                5                 48
  CLUS_5                2                 24
  CLUS_6                0                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        6     21      8     19
  18P LOSS WILD-TYPE     20     53     38     19
D71V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                6                 20
  CLUS_2               21                 53
  CLUS_3                8                 38
  CLUS_4               19                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       17     12     13     12
  18P LOSS WILD-TYPE     28     37     39     25
D71V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               17                 28
  CLUS_2               12                 37
  CLUS_3               13                 39
  CLUS_4               12                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED       11      8      6      7      6
  18P LOSS WILD-TYPE     28     17     14      8     17
D71V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               11                 28
  CLUS_2                8                 17
  CLUS_3                6                 14
  CLUS_4                7                  8
  CLUS_5                6                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED       15      9      3      5      6
  18P LOSS WILD-TYPE     32     16     13     11     12
D71V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               15                 32
  CLUS_2                9                 16
  CLUS_3                3                 13
  CLUS_4                5                 11
  CLUS_5                6                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED       11      8     12     11     11
  18P LOSS WILD-TYPE     28     18     31     28     19
D71V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               11                 28
  CLUS_2                8                 18
  CLUS_3               12                 31
  CLUS_4               11                 28
  CLUS_5               11                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       25     20      8
  18P LOSS WILD-TYPE     49     55     20
D71V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               25                 49
  CLUS_2               20                 55
  CLUS_3                8                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED       12     16     10      5     10
  18P LOSS WILD-TYPE     40     31     15     26     12
D71V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               12                 40
  CLUS_2               16                 31
  CLUS_3               10                 15
  CLUS_4                5                 26
  CLUS_5               10                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       30     13     10
  18P LOSS WILD-TYPE     72     29     23
D71V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               30                 72
  CLUS_2               13                 29
  CLUS_3               10                 23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P LOSS MUTATED       11      0      6      5     16     11      4
  18P LOSS WILD-TYPE     16     11     21      8     35     16     13
D71V9, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               11                 16
  CLUS_2                0                 11
  CLUS_3                6                 21
  CLUS_4                5                  8
  CLUS_5               16                 35
  CLUS_6               11                 16
  CLUS_7                4                 13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P LOSS MUTATED        9      9      8     18      9      0
  18P LOSS WILD-TYPE     14     35     11     35     17      8
D71V10, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                9                 14
  CLUS_2                9                 35
  CLUS_3                8                 11
  CLUS_4               18                 35
  CLUS_5                9                 17
  CLUS_6                0                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       14     55     10     25
  18Q LOSS WILD-TYPE     12     19     36     13
D72V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               14                 12
  CLUS_2               55                 19
  CLUS_3               10                 36
  CLUS_4               25                 13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       30     20     40     14
  18Q LOSS WILD-TYPE     15     29     12     23
D72V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               30                 15
  CLUS_2               20                 29
  CLUS_3               40                 12
  CLUS_4               14                 23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED       23     15      9      8     11
  18Q LOSS WILD-TYPE     16     10     11      7     12
D72V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               23                 16
  CLUS_2               15                 10
  CLUS_3                9                 11
  CLUS_4                8                  7
  CLUS_5               11                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED       27     16      8      6      9
  18Q LOSS WILD-TYPE     20      9      8     10      9
D72V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               27                 20
  CLUS_2               16                  9
  CLUS_3                8                  8
  CLUS_4                6                 10
  CLUS_5                9                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED       26     12     33     18     12
  18Q LOSS WILD-TYPE     13     14     10     21     18
D72V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               26                 13
  CLUS_2               12                 14
  CLUS_3               33                 10
  CLUS_4               18                 21
  CLUS_5               12                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       43     50      8
  18Q LOSS WILD-TYPE     31     25     20
D72V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               43                 31
  CLUS_2               50                 25
  CLUS_3                8                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED       41     23     16      9     12
  18Q LOSS WILD-TYPE     11     24      9     22     10
D72V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               41                 11
  CLUS_2               23                 24
  CLUS_3               16                  9
  CLUS_4                9                 22
  CLUS_5               12                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       69     20     12
  18Q LOSS WILD-TYPE     33     22     21
D72V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               69                 33
  CLUS_2               20                 22
  CLUS_3               12                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q LOSS MUTATED       17      6     13      5     37     16      5
  18Q LOSS WILD-TYPE     10      5     14      8     14     11     12
D72V9, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               17                 10
  CLUS_2                6                  5
  CLUS_3               13                 14
  CLUS_4                5                  8
  CLUS_5               37                 14
  CLUS_6               16                 11
  CLUS_7                5                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q LOSS MUTATED       18     33      8     30     10      0
  18Q LOSS WILD-TYPE      5     11     11     23     16      8
D72V10, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               18                  5
  CLUS_2               33                 11
  CLUS_3                8                 11
  CLUS_4               30                 23
  CLUS_5               10                 16
  CLUS_6                0                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = 19P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        4     11      0      2
  19P LOSS WILD-TYPE     22     63     46     36
D73V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                4                 22
  CLUS_2               11                 63
  CLUS_3                0                 46
  CLUS_4                2                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        5      1      9      2
  19P LOSS WILD-TYPE     40     48     43     35
D73V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                5                 40
  CLUS_2                1                 48
  CLUS_3                9                 43
  CLUS_4                2                 35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        2      1      3      1      4
  19P LOSS WILD-TYPE     37     24     17     14     19
D73V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                1                 24
  CLUS_3                3                 17
  CLUS_4                1                 14
  CLUS_5                4                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        1      2      2      2      4
  19P LOSS WILD-TYPE     46     23     14     14     14
D73V4, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                2                 23
  CLUS_3                2                 14
  CLUS_4                2                 14
  CLUS_5                4                 14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        1      0     11      2      3
  19P LOSS WILD-TYPE     38     26     32     37     27
D73V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                0                 26
  CLUS_3               11                 32
  CLUS_4                2                 37
  CLUS_5                3                 27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        5     12      0
  19P LOSS WILD-TYPE     69     63     28
D73V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                5                 69
  CLUS_2               12                 63
  CLUS_3                0                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        7      5      2      3      0
  19P LOSS WILD-TYPE     45     42     23     28     22
D73V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                7                 45
  CLUS_2                5                 42
  CLUS_3                2                 23
  CLUS_4                3                 28
  CLUS_5                0                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       16      1      0
  19P LOSS WILD-TYPE     86     41     33
D73V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               16                 86
  CLUS_2                1                 41
  CLUS_3                0                 33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P LOSS MUTATED        1      2      3      2      8      0      0
  19P LOSS WILD-TYPE     26      9     24     11     43     27     17
D73V9, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 26
  CLUS_2                2                  9
  CLUS_3                3                 24
  CLUS_4                2                 11
  CLUS_5                8                 43
  CLUS_6                0                 27
  CLUS_7                0                 17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P LOSS MUTATED        1      6      4      5      0      0
  19P LOSS WILD-TYPE     22     38     15     48     26      8
D73V10, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 22
  CLUS_2                6                 38
  CLUS_3                4                 15
  CLUS_4                5                 48
  CLUS_5                0                 26
  CLUS_6                0                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        3      6      0      2
  19Q LOSS WILD-TYPE     23     68     46     36
D74V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                3                 23
  CLUS_2                6                 68
  CLUS_3                0                 46
  CLUS_4                2                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        5      0      5      1
  19Q LOSS WILD-TYPE     40     49     47     36
D74V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                5                 40
  CLUS_2                0                 49
  CLUS_3                5                 47
  CLUS_4                1                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        2      1      1      0      4
  19Q LOSS WILD-TYPE     37     24     19     15     19
D74V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                1                 24
  CLUS_3                1                 19
  CLUS_4                0                 15
  CLUS_5                4                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        1      2      1      1      3
  19Q LOSS WILD-TYPE     46     23     15     15     15
D74V4, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                2                 23
  CLUS_3                1                 15
  CLUS_4                1                 15
  CLUS_5                3                 15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        2      0      8      0      1
  19Q LOSS WILD-TYPE     37     26     35     39     29
D74V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                0                 26
  CLUS_3                8                 35
  CLUS_4                0                 39
  CLUS_5                1                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1     10      0
  19Q LOSS WILD-TYPE     73     65     28
D74V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 73
  CLUS_2               10                 65
  CLUS_3                0                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        4      4      0      2      1
  19Q LOSS WILD-TYPE     48     43     25     29     21
D74V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                4                 43
  CLUS_3                0                 25
  CLUS_4                2                 29
  CLUS_5                1                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       11      0      0
  19Q LOSS WILD-TYPE     91     42     33
D74V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               11                 91
  CLUS_2                0                 42
  CLUS_3                0                 33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q LOSS MUTATED        1      2      2      1      4      0      0
  19Q LOSS WILD-TYPE     26      9     25     12     47     27     17
D74V9, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 26
  CLUS_2                2                  9
  CLUS_3                2                 25
  CLUS_4                1                 12
  CLUS_5                4                 47
  CLUS_6                0                 27
  CLUS_7                0                 17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q LOSS MUTATED        2      5      2      1      0      0
  19Q LOSS WILD-TYPE     21     39     17     52     26      8
D74V10, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                5                 39
  CLUS_3                2                 17
  CLUS_4                1                 52
  CLUS_5                0                 26
  CLUS_6                0                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = 20P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        5     11      0      3
  20P LOSS WILD-TYPE     21     63     46     35
D75V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                5                 21
  CLUS_2               11                 63
  CLUS_3                0                 46
  CLUS_4                3                 35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        7      2      8      2
  20P LOSS WILD-TYPE     38     47     44     35
D75V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                7                 38
  CLUS_2                2                 47
  CLUS_3                8                 44
  CLUS_4                2                 35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        4      2      2      3      1
  20P LOSS WILD-TYPE     35     23     18     12     22
D75V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 35
  CLUS_2                2                 23
  CLUS_3                2                 18
  CLUS_4                3                 12
  CLUS_5                1                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        4      2      2      3      1
  20P LOSS WILD-TYPE     43     23     14     13     17
D75V4, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                2                 23
  CLUS_3                2                 14
  CLUS_4                3                 13
  CLUS_5                1                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        5      1      6      6      0
  20P LOSS WILD-TYPE     34     25     37     33     30
D75V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                5                 34
  CLUS_2                1                 25
  CLUS_3                6                 37
  CLUS_4                6                 33
  CLUS_5                0                 30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       10      8      0
  20P LOSS WILD-TYPE     64     67     28
D75V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               10                 64
  CLUS_2                8                 67
  CLUS_3                0                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        9      2      4      3      0
  20P LOSS WILD-TYPE     43     45     21     28     22
D75V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                9                 43
  CLUS_2                2                 45
  CLUS_3                4                 21
  CLUS_4                3                 28
  CLUS_5                0                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       14      4      0
  20P LOSS WILD-TYPE     88     38     33
D75V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               14                 88
  CLUS_2                4                 38
  CLUS_3                0                 33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P LOSS MUTATED        4      0      1      0      8      5      0
  20P LOSS WILD-TYPE     23     11     26     13     43     22     17
D75V9, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                0                 11
  CLUS_3                1                 26
  CLUS_4                0                 13
  CLUS_5                8                 43
  CLUS_6                5                 22
  CLUS_7                0                 17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P LOSS MUTATED        3      7      0      8      0      0
  20P LOSS WILD-TYPE     20     37     19     45     26      8
D75V10, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                7                 37
  CLUS_3                0                 19
  CLUS_4                8                 45
  CLUS_5                0                 26
  CLUS_6                0                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = 20Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        3      2      0      0
  20Q LOSS WILD-TYPE     23     72     46     38
D76V1, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                3                 23
  CLUS_2                2                 72
  CLUS_3                0                 46
  CLUS_4                0                 38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        1      1      3      0
  20Q LOSS WILD-TYPE     44     48     49     37
D76V2, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                 44
  CLUS_2                1                 48
  CLUS_3                3                 49
  CLUS_4                0                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q LOSS MUTATED        1      0      0      0      0
  20Q LOSS WILD-TYPE     38     25     20     15     23
D76V3, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 1                121 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-3A-A9IU         TCGA-3A-A9IX         TCGA-3A-A9IZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-3E-AAAZ         TCGA-F2-6879         TCGA-F2-6880 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A4P5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FB-A545         TCGA-FB-A5VM         TCGA-FB-A78T 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FB-AAPP         TCGA-FB-AAPQ         TCGA-FB-AAPZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FB-AAQ1         TCGA-FB-AAQ6         TCGA-FZ-5919 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5921         TCGA-FZ-5922 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FZ-5923         TCGA-FZ-5924         TCGA-FZ-5926 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-H8-A6C1         TCGA-HV-A5A6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7919         TCGA-HZ-7920 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-8001         TCGA-HZ-8002 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HZ-8003         TCGA-HZ-8005         TCGA-HZ-8315 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8638         TCGA-HZ-A4BH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7646 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-7647         TCGA-IB-7649         TCGA-IB-7651 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-7652         TCGA-IB-7654         TCGA-IB-7885 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-8126         TCGA-IB-8127 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST         TCGA-IB-A6UF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-AAUS         TCGA-IB-AAUU         TCGA-IB-AAUV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-L1-A7W4         TCGA-LB-A8F3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-LB-A9Q5         TCGA-M8-A5N4         TCGA-OE-A75W 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PZ-A5RE         TCGA-Q3-A5QY         TCGA-Q3-AA2A 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RB-A7B8         TCGA-RB-AA9M         TCGA-S4-A8RM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-S4-A8RP         TCGA-US-A774 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-US-A776         TCGA-US-A779         TCGA-US-A77E 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-US-A77G         TCGA-US-A77J         TCGA-XD-AAUH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-XD-AAUI         TCGA-XD-AAUL         TCGA-XN-A8T5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-YB-A89D         TCGA-YH-A8SY         TCGA-YY-A8LH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-Z5-AAPL 
"20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q LOSS MUTATED        1      0      0      0      0
  20Q LOSS WILD-TYPE     46     25     16     16     18
D76V4, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 1                121 
        TCGA-2J-AAB4         TCGA-2J-AAB8         TCGA-2J-AAB9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-2J-AABA         TCGA-2J-AABF         TCGA-2J-AABH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-2J-AABK         TCGA-2J-AABO         TCGA-2J-AABR 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-2L-AAQA         TCGA-2L-AAQI         TCGA-2L-AAQJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-2L-AAQL         TCGA-2L-AAQM         TCGA-3A-A9I5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-3A-A9IB         TCGA-3A-A9IH         TCGA-3A-A9IN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-3A-A9IU         TCGA-3A-A9IX         TCGA-3A-A9IZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-3E-AAAZ         TCGA-F2-6879         TCGA-F2-6880 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A8YN         TCGA-FB-A4P5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FB-A545         TCGA-FB-A5VM         TCGA-FB-A78T 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FB-AAPP         TCGA-FB-AAPQ         TCGA-FB-AAPZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FB-AAQ1         TCGA-FB-AAQ6         TCGA-FZ-5919 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5921         TCGA-FZ-5922 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FZ-5923         TCGA-FZ-5924         TCGA-FZ-5926 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-H8-A6C1         TCGA-HV-A5A6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7919         TCGA-HZ-7920 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-8001         TCGA-HZ-8002 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HZ-8003         TCGA-HZ-8005         TCGA-HZ-8315 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8638         TCGA-HZ-A4BH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7646 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-7647         TCGA-IB-7649         TCGA-IB-7651 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-7652         TCGA-IB-7654         TCGA-IB-7885 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-8126         TCGA-IB-8127 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST         TCGA-IB-A6UF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-A7LX         TCGA-IB-A7M4         TCGA-IB-AAUM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-AAUN         TCGA-IB-AAUO         TCGA-IB-AAUP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-AAUS         TCGA-IB-AAUU         TCGA-IB-AAUV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IB-AAUW         TCGA-L1-A7W4         TCGA-LB-A8F3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-LB-A9Q5         TCGA-M8-A5N4         TCGA-OE-A75W 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PZ-A5RE         TCGA-Q3-A5QY         TCGA-Q3-AA2A 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RB-A7B8         TCGA-RB-AA9M         TCGA-S4-A8RM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S4-A8RO         TCGA-S4-A8RP         TCGA-US-A774 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-US-A776         TCGA-US-A779         TCGA-US-A77E 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-US-A77G         TCGA-US-A77J         TCGA-XD-AAUH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-XD-AAUI         TCGA-XD-AAUL         TCGA-XN-A8T5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-YB-A89D         TCGA-YH-A8SY         TCGA-YY-A8LH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-Z5-AAPL 
"20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q LOSS MUTATED        1      0      2      2      0
  20Q LOSS WILD-TYPE     38     26     41     37     30
D76V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                0                 26
  CLUS_3                2                 41
  CLUS_4                2                 37
  CLUS_5                0                 30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        2      3      0
  20Q LOSS WILD-TYPE     72     72     28
D76V6, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                 72
  CLUS_2                3                 72
  CLUS_3                0                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q LOSS MUTATED        3      1      1      0      0
  20Q LOSS WILD-TYPE     49     46     24     31     22
D76V7, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                1                 46
  CLUS_3                1                 24
  CLUS_4                0                 31
  CLUS_5                0                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        4      1      0
  20Q LOSS WILD-TYPE     98     41     33
D76V8, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                 98
  CLUS_2                1                 41
  CLUS_3                0                 33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q LOSS MUTATED        1      0      0      0      2      2      0
  20Q LOSS WILD-TYPE     26     11     27     13     49     25     17
D76V9, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                 26
  CLUS_2                0                 11
  CLUS_3                0                 27
  CLUS_4                0                 13
  CLUS_5                2                 49
  CLUS_6                2                 25
  CLUS_7                0                 17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20Q LOSS MUTATED        0      3      0      2      0      0
  20Q LOSS WILD-TYPE     23     41     19     51     26      8
D76V10, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                 23
  CLUS_2                3                 41
  CLUS_3                0                 19
  CLUS_4                2                 51
  CLUS_5                0                 26
  CLUS_6                0                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        7     32      3     16
  21Q LOSS WILD-TYPE     19     42     43     22
D77V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                7                 19
  CLUS_2               32                 42
  CLUS_3                3                 43
  CLUS_4               16                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       17      9     24      7
  21Q LOSS WILD-TYPE     28     40     28     30
D77V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               17                 28
  CLUS_2                9                 40
  CLUS_3               24                 28
  CLUS_4                7                 30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED       12      6      5      7      8
  21Q LOSS WILD-TYPE     27     19     15      8     15
D77V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               12                 27
  CLUS_2                6                 19
  CLUS_3                5                 15
  CLUS_4                7                  8
  CLUS_5                8                 15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED       13      7      2      7      9
  21Q LOSS WILD-TYPE     34     18     14      9      9
D77V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               13                 34
  CLUS_2                7                 18
  CLUS_3                2                 14
  CLUS_4                7                  9
  CLUS_5                9                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED       15      6     17      9      8
  21Q LOSS WILD-TYPE     24     20     26     30     22
D77V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               15                 24
  CLUS_2                6                 20
  CLUS_3               17                 26
  CLUS_4                9                 30
  CLUS_5                8                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       24     27      4
  21Q LOSS WILD-TYPE     50     48     24
D77V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               24                 50
  CLUS_2               27                 48
  CLUS_3                4                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED       17     12      8     14      4
  21Q LOSS WILD-TYPE     35     35     17     17     18
D77V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               17                 35
  CLUS_2               12                 35
  CLUS_3                8                 17
  CLUS_4               14                 17
  CLUS_5                4                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       39     11      5
  21Q LOSS WILD-TYPE     63     31     28
D77V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               39                 63
  CLUS_2               11                 31
  CLUS_3                5                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q LOSS MUTATED        7      2      8      3     22      9      2
  21Q LOSS WILD-TYPE     20      9     19     10     29     18     15
D77V9, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                7                 20
  CLUS_2                2                  9
  CLUS_3                8                 19
  CLUS_4                3                 10
  CLUS_5               22                 29
  CLUS_6                9                 18
  CLUS_7                2                 15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  21Q LOSS MUTATED        7     16      8     16      4      2
  21Q LOSS WILD-TYPE     16     28     11     37     22      6
D77V10, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                7                 16
  CLUS_2               16                 28
  CLUS_3                8                 11
  CLUS_4               16                 37
  CLUS_5                4                 22
  CLUS_6                2                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        1     31      2     13
  22Q LOSS WILD-TYPE     25     43     44     25
D78V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                 25
  CLUS_2               31                 43
  CLUS_3                2                 44
  CLUS_4               13                 25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       19      7     17      4
  22Q LOSS WILD-TYPE     26     42     35     33
D78V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               19                 26
  CLUS_2                7                 42
  CLUS_3               17                 35
  CLUS_4                4                 33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED       11      4      5      4      7
  22Q LOSS WILD-TYPE     28     21     15     11     16
D78V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               11                 28
  CLUS_2                4                 21
  CLUS_3                5                 15
  CLUS_4                4                 11
  CLUS_5                7                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED       12      5      5      4      5
  22Q LOSS WILD-TYPE     35     20     11     12     13
D78V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               12                 35
  CLUS_2                5                 20
  CLUS_3                5                 11
  CLUS_4                4                 12
  CLUS_5                5                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED       11      7     16      6      4
  22Q LOSS WILD-TYPE     28     19     27     33     26
D78V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               11                 28
  CLUS_2                7                 19
  CLUS_3               16                 27
  CLUS_4                6                 33
  CLUS_5                4                 26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       18     22      4
  22Q LOSS WILD-TYPE     56     53     24
D78V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               18                 56
  CLUS_2               22                 53
  CLUS_3                4                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED       19     10      6      6      3
  22Q LOSS WILD-TYPE     33     37     19     25     19
D78V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               19                 33
  CLUS_2               10                 37
  CLUS_3                6                 19
  CLUS_4                6                 25
  CLUS_5                3                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       33      6      5
  22Q LOSS WILD-TYPE     69     36     28
D78V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               33                 69
  CLUS_2                6                 36
  CLUS_3                5                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q LOSS MUTATED        6      2      4      1     20      8      2
  22Q LOSS WILD-TYPE     21      9     23     12     31     19     15
D78V9, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                6                 21
  CLUS_2                2                  9
  CLUS_3                4                 23
  CLUS_4                1                 12
  CLUS_5               20                 31
  CLUS_6                8                 19
  CLUS_7                2                 15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q LOSS MUTATED        5     16      5     13      2      2
  22Q LOSS WILD-TYPE     18     28     14     40     24      6
D78V10, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                5                 18
  CLUS_2               16                 28
  CLUS_3                5                 14
  CLUS_4               13                 40
  CLUS_5                2                 24
  CLUS_6                2                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = XP LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED        3     17      1      6
  XP LOSS WILD-TYPE     23     57     45     32
D79V1, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               3                23
  CLUS_2              17                57
  CLUS_3               1                45
  CLUS_4               6                32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED       10      5      9      3
  XP LOSS WILD-TYPE     35     44     43     34
D79V2, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              10                35
  CLUS_2               5                44
  CLUS_3               9                43
  CLUS_4               3                34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP LOSS MUTATED        9      0      1      1      4
  XP LOSS WILD-TYPE     30     25     19     14     19
D79V3, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               9                30
  CLUS_2               0                25
  CLUS_3               1                19
  CLUS_4               1                14
  CLUS_5               4                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP LOSS MUTATED        8      1      2      2      2
  XP LOSS WILD-TYPE     39     24     14     14     16
D79V4, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               8                39
  CLUS_2               1                24
  CLUS_3               2                14
  CLUS_4               2                14
  CLUS_5               2                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP LOSS MUTATED        7      4      7      7      1
  XP LOSS WILD-TYPE     32     22     36     32     29
D79V5, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               7                32
  CLUS_2               4                22
  CLUS_3               7                36
  CLUS_4               7                32
  CLUS_5               1                29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED        8     15      3
  XP LOSS WILD-TYPE     66     60     25
D79V6, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               8                66
  CLUS_2              15                60
  CLUS_3               3                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP LOSS MUTATED       12      3      4      5      2
  XP LOSS WILD-TYPE     40     44     21     26     20
D79V7, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              12                40
  CLUS_2               3                44
  CLUS_3               4                21
  CLUS_4               5                26
  CLUS_5               2                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED       16      6      4
  XP LOSS WILD-TYPE     86     36     29
D79V8, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              16                86
  CLUS_2               6                36
  CLUS_3               4                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP LOSS MUTATED        3      3      3      1     12      2      1
  XP LOSS WILD-TYPE     24      8     24     12     39     25     16
D79V9, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               3                24
  CLUS_2               3                 8
  CLUS_3               3                24
  CLUS_4               1                12
  CLUS_5              12                39
  CLUS_6               2                25
  CLUS_7               1                16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XP LOSS MUTATED        3     11      0      7      3      1
  XP LOSS WILD-TYPE     20     33     19     46     23      7
D79V10, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2              11                33
  CLUS_3               0                19
  CLUS_4               7                46
  CLUS_5               3                23
  CLUS_6               1                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        2     11      1      2
  XQ LOSS WILD-TYPE     24     63     45     36
D80V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                24
  CLUS_2              11                63
  CLUS_3               1                45
  CLUS_4               2                36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        6      4      6      0
  XQ LOSS WILD-TYPE     39     45     46     37
D80V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               6                39
  CLUS_2               4                45
  CLUS_3               6                46
  CLUS_4               0                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        6      0      0      0      1
  XQ LOSS WILD-TYPE     33     25     20     15     22
D80V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               6                33
  CLUS_2               0                25
  CLUS_3               0                20
  CLUS_4               0                15
  CLUS_5               1                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        6      0      0      0      1
  XQ LOSS WILD-TYPE     41     25     16     16     17
D80V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               6                41
  CLUS_2               0                25
  CLUS_3               0                16
  CLUS_4               0                16
  CLUS_5               1                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        3      3      5      4      0
  XQ LOSS WILD-TYPE     36     23     38     35     30
D80V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3                36
  CLUS_2               3                23
  CLUS_3               5                38
  CLUS_4               4                35
  CLUS_5               0                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        5      9      1
  XQ LOSS WILD-TYPE     69     66     27
D80V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               5                69
  CLUS_2               9                66
  CLUS_3               1                27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        6      2      3      3      1
  XQ LOSS WILD-TYPE     46     45     22     28     21
D80V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               6                46
  CLUS_2               2                45
  CLUS_3               3                22
  CLUS_4               3                28
  CLUS_5               1                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       10      3      2
  XQ LOSS WILD-TYPE     92     39     31
D80V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              10                92
  CLUS_2               3                39
  CLUS_3               2                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ LOSS MUTATED        2      3      1      0      6      2      0
  XQ LOSS WILD-TYPE     25      8     26     13     45     25     17
D80V9, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                25
  CLUS_2               3                 8
  CLUS_3               1                26
  CLUS_4               0                13
  CLUS_5               6                45
  CLUS_6               2                25
  CLUS_7               0                17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ LOSS MUTATED        2      6      0      4      1      1
  XQ LOSS WILD-TYPE     21     38     19     49     25      7
D80V10, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                21
  CLUS_2               6                38
  CLUS_3               0                19
  CLUS_4               4                49
  CLUS_5               1                25
  CLUS_6               1                 7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
