[1] "ofn"        "-oTPCPG-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PCPG-TP/22542422/PCPG-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PCPG-TP/22533877/transformed.cor.cli.txt"

nPatients in clinical file=179, in cluster file=162, common to both=162
[1]  28 162
[1] "AMP PEAK 1(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE 
                          30                          132 
  AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE 
                          30                          132 
[1] "AMP PEAK 2(4Q31.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE 
                          15                          147 
  AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE 
                          15                          147 
[1] "AMP PEAK 3(11P15.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(11P15.2) MUTATED AMP PEAK 3(11P15.2) WILD-TYPE 
                            8                           154 
  AMP PEAK 3(11P15.2) MUTATED AMP PEAK 3(11P15.2) WILD-TYPE 
                            8                           154 
[1] "AMP PEAK 4(12Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 4(12Q13.3) MUTATED AMP PEAK 4(12Q13.3) WILD-TYPE 
                           16                           146 
  AMP PEAK 4(12Q13.3) MUTATED AMP PEAK 4(12Q13.3) WILD-TYPE 
                           16                           146 
[1] "AMP PEAK 5(14Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 5(14Q24.3) MUTATED AMP PEAK 5(14Q24.3) WILD-TYPE 
                           10                           152 
  AMP PEAK 5(14Q24.3) MUTATED AMP PEAK 5(14Q24.3) WILD-TYPE 
                           10                           152 
[1] "AMP PEAK 6(17Q21.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 6(17Q21.31) MUTATED AMP PEAK 6(17Q21.31) WILD-TYPE 
                            16                            146 
  AMP PEAK 6(17Q21.31) MUTATED AMP PEAK 6(17Q21.31) WILD-TYPE 
                            16                            146 
[1] "DEL PEAK  1(1P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE 
                        113                          49 
  DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE 
                        113                          49 
[1] "DEL PEAK  2(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE 
                         21                         141 
  DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE 
                         21                         141 
[1] "DEL PEAK  3(3P24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE 
                           64                            98 
  DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE 
                           64                            98 
[1] "DEL PEAK  4(3Q26.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE 
                           93                            69 
  DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE 
                           93                            69 
[1] "DEL PEAK  5(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                           13                           149 
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                           13                           149 
[1] "DEL PEAK  6(4Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q34.2) MUTATED DEL PEAK  6(4Q34.2) WILD-TYPE 
                           13                           149 
  DEL PEAK  6(4Q34.2) MUTATED DEL PEAK  6(4Q34.2) WILD-TYPE 
                           13                           149 
[1] "DEL PEAK  7(5Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                         12                         150 
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                         12                         150 
[1] "DEL PEAK  8(6P12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(6P12.3) MUTATED DEL PEAK  8(6P12.3) WILD-TYPE 
                           10                           152 
  DEL PEAK  8(6P12.3) MUTATED DEL PEAK  8(6P12.3) WILD-TYPE 
                           10                           152 
[1] "DEL PEAK  9(6Q16.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6Q16.1) MUTATED DEL PEAK  9(6Q16.1) WILD-TYPE 
                           24                           138 
  DEL PEAK  9(6Q16.1) MUTATED DEL PEAK  9(6Q16.1) WILD-TYPE 
                           24                           138 
[1] "DEL PEAK 10(8P22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE 
                         25                         137 
  DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE 
                         25                         137 
[1] "DEL PEAK 11(8Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(8Q23.3) MUTATED DEL PEAK 11(8Q23.3) WILD-TYPE 
                           13                           149 
  DEL PEAK 11(8Q23.3) MUTATED DEL PEAK 11(8Q23.3) WILD-TYPE 
                           13                           149 
[1] "DEL PEAK 12(9P24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE 
                           15                           147 
  DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE 
                           15                           147 
[1] "DEL PEAK 13(9Q21.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE 
                            14                            148 
  DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE 
                            14                            148 
[1] "DEL PEAK 14(11P15.4) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE 
                            58                            104 
  DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE 
                            58                            104 
[1] "DEL PEAK 15(11Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE 
                            50                            112 
  DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE 
                            50                            112 
[1] "DEL PEAK 16(12Q21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(12Q21.33) MUTATED DEL PEAK 16(12Q21.33) WILD-TYPE 
                              8                             154 
  DEL PEAK 16(12Q21.33) MUTATED DEL PEAK 16(12Q21.33) WILD-TYPE 
                              8                             154 
[1] "DEL PEAK 17(13Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(13Q22.3) MUTATED DEL PEAK 17(13Q22.3) WILD-TYPE 
                             8                            154 
  DEL PEAK 17(13Q22.3) MUTATED DEL PEAK 17(13Q22.3) WILD-TYPE 
                             8                            154 
[1] "DEL PEAK 18(16Q21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(16Q21) MUTATED DEL PEAK 18(16Q21) WILD-TYPE 
                           5                          157 
  DEL PEAK 18(16Q21) MUTATED DEL PEAK 18(16Q21) WILD-TYPE 
                           5                          157 
[1] "DEL PEAK 19(17P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(17P13.2) MUTATED DEL PEAK 19(17P13.2) WILD-TYPE 
                            64                             98 
  DEL PEAK 19(17P13.2) MUTATED DEL PEAK 19(17P13.2) WILD-TYPE 
                            64                             98 
[1] "DEL PEAK 20(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(17Q11.2) MUTATED DEL PEAK 20(17Q11.2) WILD-TYPE 
                            42                            120 
  DEL PEAK 20(17Q11.2) MUTATED DEL PEAK 20(17Q11.2) WILD-TYPE 
                            42                            120 
[1] "DEL PEAK 21(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE 
                             65                              97 
  DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE 
                             65                              97 
[1] "DEL PEAK 22(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE 
                           46                           116 
  DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE 
                           46                           116 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 162 columns.

Variable 1:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 162 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(1Q21.3) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 1(1Q21.3) MUTATED       17      0      0     11      2
  AMP PEAK 1(1Q21.3) WILD-TYPE     20     40     10     39     23
D1V1, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                         17                           20
  CLUS_2                          0                           40
  CLUS_3                          0                           10
  CLUS_4                         11                           39
  CLUS_5                          2                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q21.3) MUTATED       10     17      3
  AMP PEAK 1(1Q21.3) WILD-TYPE     30     60     42
D1V2, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                         10                           30
  CLUS_2                         17                           60
  CLUS_3                          3                           42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q21.3) MUTATED        2      3      4      4
  AMP PEAK 1(1Q21.3) WILD-TYPE     14     17     19     14
D1V3, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          2                           14
  CLUS_2                          3                           17
  CLUS_3                          4                           19
  CLUS_4                          4                           14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q21.3) MUTATED        5      4      4
  AMP PEAK 1(1Q21.3) WILD-TYPE     26     14     24
D1V4, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          5                           26
  CLUS_2                          4                           14
  CLUS_3                          4                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q21.3) MUTATED        7     13      8      2
  AMP PEAK 1(1Q21.3) WILD-TYPE     25     52     36     19
D1V5, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          7                           25
  CLUS_2                         13                           52
  CLUS_3                          8                           36
  CLUS_4                          2                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q21.3) MUTATED        6     12      9      3
  AMP PEAK 1(1Q21.3) WILD-TYPE     28     52     34     18
D1V6, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          6                           28
  CLUS_2                         12                           52
  CLUS_3                          9                           34
  CLUS_4                          3                           18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q21.3) MUTATED       11     10      9
  AMP PEAK 1(1Q21.3) WILD-TYPE     52     34     46
D1V7, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                         11                           52
  CLUS_2                         10                           34
  CLUS_3                          9                           46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q21.3) MUTATED       15      9      4      2
  AMP PEAK 1(1Q21.3) WILD-TYPE     51     45     14     22
D1V8, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                         15                           51
  CLUS_2                          9                           45
  CLUS_3                          4                           14
  CLUS_4                          2                           22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 1(1Q21.3) MUTATED        9     14      1      3      3
  AMP PEAK 1(1Q21.3) WILD-TYPE     24     36     15     30     26
D1V9, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          9                           24
  CLUS_2                         14                           36
  CLUS_3                          1                           15
  CLUS_4                          3                           30
  CLUS_5                          3                           26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 1(1Q21.3) MUTATED        3      9      9      2      1      4      2
  AMP PEAK 1(1Q21.3) WILD-TYPE     15     32     18     13     22     14     17
D1V10, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          3                           15
  CLUS_2                          9                           32
  CLUS_3                          9                           18
  CLUS_4                          2                           13
  CLUS_5                          1                           22
  CLUS_6                          4                           14
  CLUS_7                          2                           17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK 2(4Q31.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 2(4Q31.1) MUTATED        4      2      3      2      4
  AMP PEAK 2(4Q31.1) WILD-TYPE     33     38      7     48     21
D2V1, multiclass
        clus
vv       AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE
  CLUS_1                          4                           33
  CLUS_2                          2                           38
  CLUS_3                          3                            7
  CLUS_4                          2                           48
  CLUS_5                          4                           21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(4Q31.1) MUTATED        1      9      5
  AMP PEAK 2(4Q31.1) WILD-TYPE     39     68     40
D2V2, multiclass
        clus
vv       AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE
  CLUS_1                          1                           39
  CLUS_2                          9                           68
  CLUS_3                          5                           40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(4Q31.1) MUTATED        3      1      2      2
  AMP PEAK 2(4Q31.1) WILD-TYPE     13     19     21     16
D2V3, multiclass
        clus
vv       AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE
  CLUS_1                          3                           13
  CLUS_2                          1                           19
  CLUS_3                          2                           21
  CLUS_4                          2                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(4Q31.1) MUTATED        5      3      0
  AMP PEAK 2(4Q31.1) WILD-TYPE     26     15     28
D2V4, multiclass
        clus
vv       AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE
  CLUS_1                          5                           26
  CLUS_2                          3                           15
  CLUS_3                          0                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(4Q31.1) MUTATED        1      5      7      2
  AMP PEAK 2(4Q31.1) WILD-TYPE     31     60     37     19
D2V5, multiclass
        clus
vv       AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE
  CLUS_1                          1                           31
  CLUS_2                          5                           60
  CLUS_3                          7                           37
  CLUS_4                          2                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(4Q31.1) MUTATED        9      5      0      1
  AMP PEAK 2(4Q31.1) WILD-TYPE     25     59     43     20
D2V6, multiclass
        clus
vv       AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE
  CLUS_1                          9                           25
  CLUS_2                          5                           59
  CLUS_3                          0                           43
  CLUS_4                          1                           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(4Q31.1) MUTATED        4      5      6
  AMP PEAK 2(4Q31.1) WILD-TYPE     59     39     49
D2V7, multiclass
        clus
vv       AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE
  CLUS_1                          4                           59
  CLUS_2                          5                           39
  CLUS_3                          6                           49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(4Q31.1) MUTATED        7      5      3      0
  AMP PEAK 2(4Q31.1) WILD-TYPE     59     49     15     24
D2V8, multiclass
        clus
vv       AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE
  CLUS_1                          7                           59
  CLUS_2                          5                           49
  CLUS_3                          3                           15
  CLUS_4                          0                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 2(4Q31.1) MUTATED        6      4      4      1      0
  AMP PEAK 2(4Q31.1) WILD-TYPE     27     46     12     32     29
D2V9, multiclass
        clus
vv       AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE
  CLUS_1                          6                           27
  CLUS_2                          4                           46
  CLUS_3                          4                           12
  CLUS_4                          1                           32
  CLUS_5                          0                           29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 2(4Q31.1) MUTATED        2      3      6      1      0      3      0
  AMP PEAK 2(4Q31.1) WILD-TYPE     16     38     21     14     23     15     19
D2V10, multiclass
        clus
vv       AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE
  CLUS_1                          2                           16
  CLUS_2                          3                           38
  CLUS_3                          6                           21
  CLUS_4                          1                           14
  CLUS_5                          0                           23
  CLUS_6                          3                           15
  CLUS_7                          0                           19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK 3(11P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 3(11P15.2) MUTATED        3      0      2      3      0
  AMP PEAK 3(11P15.2) WILD-TYPE     34     40      8     47     25
D3V1, multiclass
        clus
vv       AMP PEAK 3(11P15.2) MUTATED AMP PEAK 3(11P15.2) WILD-TYPE
  CLUS_1                           3                            34
  CLUS_2                           0                            40
  CLUS_3                           2                             8
  CLUS_4                           3                            47
  CLUS_5                           0                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(11P15.2) MUTATED        1      7      0
  AMP PEAK 3(11P15.2) WILD-TYPE     39     70     45
D3V2, multiclass
        clus
vv       AMP PEAK 3(11P15.2) MUTATED AMP PEAK 3(11P15.2) WILD-TYPE
  CLUS_1                           1                            39
  CLUS_2                           7                            70
  CLUS_3                           0                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(11P15.2) MUTATED        2      0      3      1
  AMP PEAK 3(11P15.2) WILD-TYPE     14     20     20     17
D3V3, multiclass
        clus
vv       AMP PEAK 3(11P15.2) MUTATED AMP PEAK 3(11P15.2) WILD-TYPE
  CLUS_1                           2                            14
  CLUS_2                           0                            20
  CLUS_3                           3                            20
  CLUS_4                           1                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(11P15.2) MUTATED        1      3      2
  AMP PEAK 3(11P15.2) WILD-TYPE     30     15     26
D3V4, multiclass
        clus
vv       AMP PEAK 3(11P15.2) MUTATED AMP PEAK 3(11P15.2) WILD-TYPE
  CLUS_1                           1                            30
  CLUS_2                           3                            15
  CLUS_3                           2                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(11P15.2) MUTATED        1      6      1      0
  AMP PEAK 3(11P15.2) WILD-TYPE     31     59     43     21
D3V5, multiclass
        clus
vv       AMP PEAK 3(11P15.2) MUTATED AMP PEAK 3(11P15.2) WILD-TYPE
  CLUS_1                           1                            31
  CLUS_2                           6                            59
  CLUS_3                           1                            43
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(11P15.2) MUTATED        2      6      0      0
  AMP PEAK 3(11P15.2) WILD-TYPE     32     58     43     21
D3V6, multiclass
        clus
vv       AMP PEAK 3(11P15.2) MUTATED AMP PEAK 3(11P15.2) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                           6                            58
  CLUS_3                           0                            43
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(11P15.2) MUTATED        2      1      5
  AMP PEAK 3(11P15.2) WILD-TYPE     61     43     50
D3V7, multiclass
        clus
vv       AMP PEAK 3(11P15.2) MUTATED AMP PEAK 3(11P15.2) WILD-TYPE
  CLUS_1                           2                            61
  CLUS_2                           1                            43
  CLUS_3                           5                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(11P15.2) MUTATED        2      5      0      1
  AMP PEAK 3(11P15.2) WILD-TYPE     64     49     18     23
D3V8, multiclass
        clus
vv       AMP PEAK 3(11P15.2) MUTATED AMP PEAK 3(11P15.2) WILD-TYPE
  CLUS_1                           2                            64
  CLUS_2                           5                            49
  CLUS_3                           0                            18
  CLUS_4                           1                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 3(11P15.2) MUTATED        0      5      2      1      0
  AMP PEAK 3(11P15.2) WILD-TYPE     33     45     14     32     29
D3V9, multiclass
        clus
vv       AMP PEAK 3(11P15.2) MUTATED AMP PEAK 3(11P15.2) WILD-TYPE
  CLUS_1                           0                            33
  CLUS_2                           5                            45
  CLUS_3                           2                            14
  CLUS_4                           1                            32
  CLUS_5                           0                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(11P15.2) MUTATED        1      3      1      3      0      0
  AMP PEAK 3(11P15.2) WILD-TYPE     17     38     26     12     23     18
                               vv
clus                            CLUS_7
  AMP PEAK 3(11P15.2) MUTATED        0
  AMP PEAK 3(11P15.2) WILD-TYPE     19
D3V10, multiclass
        clus
vv       AMP PEAK 3(11P15.2) MUTATED AMP PEAK 3(11P15.2) WILD-TYPE
  CLUS_1                           1                            17
  CLUS_2                           3                            38
  CLUS_3                           1                            26
  CLUS_4                           3                            12
  CLUS_5                           0                            23
  CLUS_6                           0                            18
  CLUS_7                           0                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK 4(12Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 4(12Q13.3) MUTATED        3      4      0      9      0
  AMP PEAK 4(12Q13.3) WILD-TYPE     34     36     10     41     25
D4V1, multiclass
        clus
vv       AMP PEAK 4(12Q13.3) MUTATED AMP PEAK 4(12Q13.3) WILD-TYPE
  CLUS_1                           3                            34
  CLUS_2                           4                            36
  CLUS_3                           0                            10
  CLUS_4                           9                            41
  CLUS_5                           0                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(12Q13.3) MUTATED        5      4      7
  AMP PEAK 4(12Q13.3) WILD-TYPE     35     73     38
D4V2, multiclass
        clus
vv       AMP PEAK 4(12Q13.3) MUTATED AMP PEAK 4(12Q13.3) WILD-TYPE
  CLUS_1                           5                            35
  CLUS_2                           4                            73
  CLUS_3                           7                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(12Q13.3) MUTATED        2      2      1      2
  AMP PEAK 4(12Q13.3) WILD-TYPE     14     18     22     16
D4V3, multiclass
        clus
vv       AMP PEAK 4(12Q13.3) MUTATED AMP PEAK 4(12Q13.3) WILD-TYPE
  CLUS_1                           2                            14
  CLUS_2                           2                            18
  CLUS_3                           1                            22
  CLUS_4                           2                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(12Q13.3) MUTATED        1      2      4
  AMP PEAK 4(12Q13.3) WILD-TYPE     30     16     24
D4V4, multiclass
        clus
vv       AMP PEAK 4(12Q13.3) MUTATED AMP PEAK 4(12Q13.3) WILD-TYPE
  CLUS_1                           1                            30
  CLUS_2                           2                            16
  CLUS_3                           4                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(12Q13.3) MUTATED        4      6      5      1
  AMP PEAK 4(12Q13.3) WILD-TYPE     28     59     39     20
D4V5, multiclass
        clus
vv       AMP PEAK 4(12Q13.3) MUTATED AMP PEAK 4(12Q13.3) WILD-TYPE
  CLUS_1                           4                            28
  CLUS_2                           6                            59
  CLUS_3                           5                            39
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(12Q13.3) MUTATED        5      5      5      1
  AMP PEAK 4(12Q13.3) WILD-TYPE     29     59     38     20
D4V6, multiclass
        clus
vv       AMP PEAK 4(12Q13.3) MUTATED AMP PEAK 4(12Q13.3) WILD-TYPE
  CLUS_1                           5                            29
  CLUS_2                           5                            59
  CLUS_3                           5                            38
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(12Q13.3) MUTATED       11      1      4
  AMP PEAK 4(12Q13.3) WILD-TYPE     52     43     51
D4V7, multiclass
        clus
vv       AMP PEAK 4(12Q13.3) MUTATED AMP PEAK 4(12Q13.3) WILD-TYPE
  CLUS_1                          11                            52
  CLUS_2                           1                            43
  CLUS_3                           4                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(12Q13.3) MUTATED       10      4      0      2
  AMP PEAK 4(12Q13.3) WILD-TYPE     56     50     18     22
D4V8, multiclass
        clus
vv       AMP PEAK 4(12Q13.3) MUTATED AMP PEAK 4(12Q13.3) WILD-TYPE
  CLUS_1                          10                            56
  CLUS_2                           4                            50
  CLUS_3                           0                            18
  CLUS_4                           2                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 4(12Q13.3) MUTATED        3      5      0      8      0
  AMP PEAK 4(12Q13.3) WILD-TYPE     30     45     16     25     29
D4V9, multiclass
        clus
vv       AMP PEAK 4(12Q13.3) MUTATED AMP PEAK 4(12Q13.3) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           5                            45
  CLUS_3                           0                            16
  CLUS_4                           8                            25
  CLUS_5                           0                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 4(12Q13.3) MUTATED        4      4      2      0      5      0
  AMP PEAK 4(12Q13.3) WILD-TYPE     14     37     25     15     18     18
                               vv
clus                            CLUS_7
  AMP PEAK 4(12Q13.3) MUTATED        1
  AMP PEAK 4(12Q13.3) WILD-TYPE     18
D4V10, multiclass
        clus
vv       AMP PEAK 4(12Q13.3) MUTATED AMP PEAK 4(12Q13.3) WILD-TYPE
  CLUS_1                           4                            14
  CLUS_2                           4                            37
  CLUS_3                           2                            25
  CLUS_4                           0                            15
  CLUS_5                           5                            18
  CLUS_6                           0                            18
  CLUS_7                           1                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK 5(14Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 5(14Q24.3) MUTATED        1      3      0      6      0
  AMP PEAK 5(14Q24.3) WILD-TYPE     36     37     10     44     25
D5V1, multiclass
        clus
vv       AMP PEAK 5(14Q24.3) MUTATED AMP PEAK 5(14Q24.3) WILD-TYPE
  CLUS_1                           1                            36
  CLUS_2                           3                            37
  CLUS_3                           0                            10
  CLUS_4                           6                            44
  CLUS_5                           0                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(14Q24.3) MUTATED        4      4      2
  AMP PEAK 5(14Q24.3) WILD-TYPE     36     73     43
D5V2, multiclass
        clus
vv       AMP PEAK 5(14Q24.3) MUTATED AMP PEAK 5(14Q24.3) WILD-TYPE
  CLUS_1                           4                            36
  CLUS_2                           4                            73
  CLUS_3                           2                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(14Q24.3) MUTATED        0      1      2      2
  AMP PEAK 5(14Q24.3) WILD-TYPE     16     19     21     16
D5V3, multiclass
        clus
vv       AMP PEAK 5(14Q24.3) MUTATED AMP PEAK 5(14Q24.3) WILD-TYPE
  CLUS_1                           0                            16
  CLUS_2                           1                            19
  CLUS_3                           2                            21
  CLUS_4                           2                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(14Q24.3) MUTATED        1      0      4
  AMP PEAK 5(14Q24.3) WILD-TYPE     30     18     24
D5V4, multiclass
        clus
vv       AMP PEAK 5(14Q24.3) MUTATED AMP PEAK 5(14Q24.3) WILD-TYPE
  CLUS_1                           1                            30
  CLUS_2                           0                            18
  CLUS_3                           4                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(14Q24.3) MUTATED        2      4      3      1
  AMP PEAK 5(14Q24.3) WILD-TYPE     30     61     41     20
D5V5, multiclass
        clus
vv       AMP PEAK 5(14Q24.3) MUTATED AMP PEAK 5(14Q24.3) WILD-TYPE
  CLUS_1                           2                            30
  CLUS_2                           4                            61
  CLUS_3                           3                            41
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(14Q24.3) MUTATED        5      3      2      0
  AMP PEAK 5(14Q24.3) WILD-TYPE     29     61     41     21
D5V6, multiclass
        clus
vv       AMP PEAK 5(14Q24.3) MUTATED AMP PEAK 5(14Q24.3) WILD-TYPE
  CLUS_1                           5                            29
  CLUS_2                           3                            61
  CLUS_3                           2                            41
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(14Q24.3) MUTATED        6      2      2
  AMP PEAK 5(14Q24.3) WILD-TYPE     57     42     53
D5V7, multiclass
        clus
vv       AMP PEAK 5(14Q24.3) MUTATED AMP PEAK 5(14Q24.3) WILD-TYPE
  CLUS_1                           6                            57
  CLUS_2                           2                            42
  CLUS_3                           2                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(14Q24.3) MUTATED        6      2      1      1
  AMP PEAK 5(14Q24.3) WILD-TYPE     60     52     17     23
D5V8, multiclass
        clus
vv       AMP PEAK 5(14Q24.3) MUTATED AMP PEAK 5(14Q24.3) WILD-TYPE
  CLUS_1                           6                            60
  CLUS_2                           2                            52
  CLUS_3                           1                            17
  CLUS_4                           1                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 5(14Q24.3) MUTATED        3      3      0      4      0
  AMP PEAK 5(14Q24.3) WILD-TYPE     30     47     16     29     29
D5V9, multiclass
        clus
vv       AMP PEAK 5(14Q24.3) MUTATED AMP PEAK 5(14Q24.3) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           3                            47
  CLUS_3                           0                            16
  CLUS_4                           4                            29
  CLUS_5                           0                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 5(14Q24.3) MUTATED        2      2      2      0      2      1
  AMP PEAK 5(14Q24.3) WILD-TYPE     16     39     25     15     21     17
                               vv
clus                            CLUS_7
  AMP PEAK 5(14Q24.3) MUTATED        1
  AMP PEAK 5(14Q24.3) WILD-TYPE     18
D5V10, multiclass
        clus
vv       AMP PEAK 5(14Q24.3) MUTATED AMP PEAK 5(14Q24.3) WILD-TYPE
  CLUS_1                           2                            16
  CLUS_2                           2                            39
  CLUS_3                           2                            25
  CLUS_4                           0                            15
  CLUS_5                           2                            21
  CLUS_6                           1                            17
  CLUS_7                           1                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK 6(17Q21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 6(17Q21.31) MUTATED        8      2      1      2      3
  AMP PEAK 6(17Q21.31) WILD-TYPE     29     38      9     48     22
D6V1, multiclass
        clus
vv       AMP PEAK 6(17Q21.31) MUTATED AMP PEAK 6(17Q21.31) WILD-TYPE
  CLUS_1                            8                             29
  CLUS_2                            2                             38
  CLUS_3                            1                              9
  CLUS_4                            2                             48
  CLUS_5                            3                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q21.31) MUTATED        4      8      4
  AMP PEAK 6(17Q21.31) WILD-TYPE     36     69     41
D6V2, multiclass
        clus
vv       AMP PEAK 6(17Q21.31) MUTATED AMP PEAK 6(17Q21.31) WILD-TYPE
  CLUS_1                            4                             36
  CLUS_2                            8                             69
  CLUS_3                            4                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(17Q21.31) MUTATED        1      1      2      4
  AMP PEAK 6(17Q21.31) WILD-TYPE     15     19     21     14
D6V3, multiclass
        clus
vv       AMP PEAK 6(17Q21.31) MUTATED AMP PEAK 6(17Q21.31) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            1                             19
  CLUS_3                            2                             21
  CLUS_4                            4                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q21.31) MUTATED        5      2      1
  AMP PEAK 6(17Q21.31) WILD-TYPE     26     16     27
D6V4, multiclass
        clus
vv       AMP PEAK 6(17Q21.31) MUTATED AMP PEAK 6(17Q21.31) WILD-TYPE
  CLUS_1                            5                             26
  CLUS_2                            2                             16
  CLUS_3                            1                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(17Q21.31) MUTATED        2      6      7      1
  AMP PEAK 6(17Q21.31) WILD-TYPE     30     59     37     20
D6V5, multiclass
        clus
vv       AMP PEAK 6(17Q21.31) MUTATED AMP PEAK 6(17Q21.31) WILD-TYPE
  CLUS_1                            2                             30
  CLUS_2                            6                             59
  CLUS_3                            7                             37
  CLUS_4                            1                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(17Q21.31) MUTATED       10      5      1      0
  AMP PEAK 6(17Q21.31) WILD-TYPE     24     59     42     21
D6V6, multiclass
        clus
vv       AMP PEAK 6(17Q21.31) MUTATED AMP PEAK 6(17Q21.31) WILD-TYPE
  CLUS_1                           10                             24
  CLUS_2                            5                             59
  CLUS_3                            1                             42
  CLUS_4                            0                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q21.31) MUTATED        7      4      5
  AMP PEAK 6(17Q21.31) WILD-TYPE     56     40     50
D6V7, multiclass
        clus
vv       AMP PEAK 6(17Q21.31) MUTATED AMP PEAK 6(17Q21.31) WILD-TYPE
  CLUS_1                            7                             56
  CLUS_2                            4                             40
  CLUS_3                            5                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(17Q21.31) MUTATED       10      4      2      0
  AMP PEAK 6(17Q21.31) WILD-TYPE     56     50     16     24
D6V8, multiclass
        clus
vv       AMP PEAK 6(17Q21.31) MUTATED AMP PEAK 6(17Q21.31) WILD-TYPE
  CLUS_1                           10                             56
  CLUS_2                            4                             50
  CLUS_3                            2                             16
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 6(17Q21.31) MUTATED        6      5      4      0      1
  AMP PEAK 6(17Q21.31) WILD-TYPE     27     45     12     33     28
D6V9, multiclass
        clus
vv       AMP PEAK 6(17Q21.31) MUTATED AMP PEAK 6(17Q21.31) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                            5                             45
  CLUS_3                            4                             12
  CLUS_4                            0                             33
  CLUS_5                            1                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 6(17Q21.31) MUTATED        2      3      8      1      0      2
  AMP PEAK 6(17Q21.31) WILD-TYPE     16     38     19     14     23     16
                                vv
clus                             CLUS_7
  AMP PEAK 6(17Q21.31) MUTATED        0
  AMP PEAK 6(17Q21.31) WILD-TYPE     19
D6V10, multiclass
        clus
vv       AMP PEAK 6(17Q21.31) MUTATED AMP PEAK 6(17Q21.31) WILD-TYPE
  CLUS_1                            2                             16
  CLUS_2                            3                             38
  CLUS_3                            8                             19
  CLUS_4                            1                             14
  CLUS_5                            0                             23
  CLUS_6                            2                             16
  CLUS_7                            0                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = DEL PEAK  1(1P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P12) MUTATED       28     14      8     40     23
  DEL PEAK  1(1P12) WILD-TYPE      9     26      2     10      2
D7V1, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        28                           9
  CLUS_2                        14                          26
  CLUS_3                         8                           2
  CLUS_4                        40                          10
  CLUS_5                        23                           2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P12) MUTATED       25     67     21
  DEL PEAK  1(1P12) WILD-TYPE     15     10     24
D7V2, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        25                          15
  CLUS_2                        67                          10
  CLUS_3                        21                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P12) MUTATED       13     13     18     10
  DEL PEAK  1(1P12) WILD-TYPE      3      7      5      8
D7V3, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        13                           3
  CLUS_2                        13                           7
  CLUS_3                        18                           5
  CLUS_4                        10                           8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P12) MUTATED       15     17     22
  DEL PEAK  1(1P12) WILD-TYPE     16      1      6
D7V4, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        15                          16
  CLUS_2                        17                           1
  CLUS_3                        22                           6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P12) MUTATED       23     59     21     10
  DEL PEAK  1(1P12) WILD-TYPE      9      6     23     11
D7V5, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        23                           9
  CLUS_2                        59                           6
  CLUS_3                        21                          23
  CLUS_4                        10                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P12) MUTATED       19     58     27      9
  DEL PEAK  1(1P12) WILD-TYPE     15      6     16     12
D7V6, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        19                          15
  CLUS_2                        58                           6
  CLUS_3                        27                          16
  CLUS_4                         9                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P12) MUTATED       38     27     48
  DEL PEAK  1(1P12) WILD-TYPE     25     17      7
D7V7, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        38                          25
  CLUS_2                        27                          17
  CLUS_3                        48                           7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P12) MUTATED       41     46     12     14
  DEL PEAK  1(1P12) WILD-TYPE     25      8      6     10
D7V8, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        41                          25
  CLUS_2                        46                           8
  CLUS_3                        12                           6
  CLUS_4                        14                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P12) MUTATED       20     43     13     20     17
  DEL PEAK  1(1P12) WILD-TYPE     13      7      3     13     12
D7V9, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        20                          13
  CLUS_2                        43                           7
  CLUS_3                        13                           3
  CLUS_4                        20                          13
  CLUS_5                        17                          12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  1(1P12) MUTATED       11     35     19     15     12     12      9
  DEL PEAK  1(1P12) WILD-TYPE      7      6      8      0     11      6     10
D7V10, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        11                           7
  CLUS_2                        35                           6
  CLUS_3                        19                           8
  CLUS_4                        15                           0
  CLUS_5                        12                          11
  CLUS_6                        12                           6
  CLUS_7                         9                          10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = DEL PEAK  2(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1Q44) MUTATED        3      7      0      7      4
  DEL PEAK  2(1Q44) WILD-TYPE     34     33     10     43     21
D8V1, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         3                          34
  CLUS_2                         7                          33
  CLUS_3                         0                          10
  CLUS_4                         7                          43
  CLUS_5                         4                          21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q44) MUTATED        7      8      6
  DEL PEAK  2(1Q44) WILD-TYPE     33     69     39
D8V2, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         7                          33
  CLUS_2                         8                          69
  CLUS_3                         6                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q44) MUTATED        1      4      0      3
  DEL PEAK  2(1Q44) WILD-TYPE     15     16     23     15
D8V3, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         1                          15
  CLUS_2                         4                          16
  CLUS_3                         0                          23
  CLUS_4                         3                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q44) MUTATED        3      0      5
  DEL PEAK  2(1Q44) WILD-TYPE     28     18     23
D8V4, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         3                          28
  CLUS_2                         0                          18
  CLUS_3                         5                          23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q44) MUTATED        7      5      7      2
  DEL PEAK  2(1Q44) WILD-TYPE     25     60     37     19
D8V5, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         7                          25
  CLUS_2                         5                          60
  CLUS_3                         7                          37
  CLUS_4                         2                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q44) MUTATED        7      5      7      2
  DEL PEAK  2(1Q44) WILD-TYPE     27     59     36     19
D8V6, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         7                          27
  CLUS_2                         5                          59
  CLUS_3                         7                          36
  CLUS_4                         2                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q44) MUTATED       11      5      5
  DEL PEAK  2(1Q44) WILD-TYPE     52     39     50
D8V7, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        11                          52
  CLUS_2                         5                          39
  CLUS_3                         5                          50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q44) MUTATED       11      5      2      3
  DEL PEAK  2(1Q44) WILD-TYPE     55     49     16     21
D8V8, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        11                          55
  CLUS_2                         5                          49
  CLUS_3                         2                          16
  CLUS_4                         3                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1Q44) MUTATED        3      5      1      9      3
  DEL PEAK  2(1Q44) WILD-TYPE     30     45     15     24     26
D8V9, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         3                          30
  CLUS_2                         5                          45
  CLUS_3                         1                          15
  CLUS_4                         9                          24
  CLUS_5                         3                          26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1Q44) MUTATED        4      4      5      1      4      2      1
  DEL PEAK  2(1Q44) WILD-TYPE     14     37     22     14     19     16     18
D8V10, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         4                          14
  CLUS_2                         4                          37
  CLUS_3                         5                          22
  CLUS_4                         1                          14
  CLUS_5                         4                          19
  CLUS_6                         2                          16
  CLUS_7                         1                          18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DEL PEAK  3(3P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(3P24.1) MUTATED       13     15      1     29      6
  DEL PEAK  3(3P24.1) WILD-TYPE     24     25      9     21     19
D9V1, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                          13                            24
  CLUS_2                          15                            25
  CLUS_3                           1                             9
  CLUS_4                          29                            21
  CLUS_5                           6                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P24.1) MUTATED       21     23     20
  DEL PEAK  3(3P24.1) WILD-TYPE     19     54     25
D9V2, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                          21                            19
  CLUS_2                          23                            54
  CLUS_3                          20                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P24.1) MUTATED        4     11      9      5
  DEL PEAK  3(3P24.1) WILD-TYPE     12      9     14     13
D9V3, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                          11                             9
  CLUS_3                           9                            14
  CLUS_4                           5                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P24.1) MUTATED       10      4     15
  DEL PEAK  3(3P24.1) WILD-TYPE     21     14     13
D9V4, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                          10                            21
  CLUS_2                           4                            14
  CLUS_3                          15                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P24.1) MUTATED       18     15     27      4
  DEL PEAK  3(3P24.1) WILD-TYPE     14     50     17     17
D9V5, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                          18                            14
  CLUS_2                          15                            50
  CLUS_3                          27                            17
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P24.1) MUTATED       12     17     31      4
  DEL PEAK  3(3P24.1) WILD-TYPE     22     47     12     17
D9V6, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                          12                            22
  CLUS_2                          17                            47
  CLUS_3                          31                            12
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P24.1) MUTATED       38      7     19
  DEL PEAK  3(3P24.1) WILD-TYPE     25     37     36
D9V7, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                          38                            25
  CLUS_2                           7                            37
  CLUS_3                          19                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P24.1) MUTATED       39     15      6      4
  DEL PEAK  3(3P24.1) WILD-TYPE     27     39     12     20
D9V8, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                          39                            27
  CLUS_2                          15                            39
  CLUS_3                           6                            12
  CLUS_4                           4                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(3P24.1) MUTATED       11     15      3     27      8
  DEL PEAK  3(3P24.1) WILD-TYPE     22     35     13      6     21
D9V9, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                          11                            22
  CLUS_2                          15                            35
  CLUS_3                           3                            13
  CLUS_4                          27                             6
  CLUS_5                           8                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(3P24.1) MUTATED        6     15     13      1     20      6
  DEL PEAK  3(3P24.1) WILD-TYPE     12     26     14     14      3     12
                               vv
clus                            CLUS_7
  DEL PEAK  3(3P24.1) MUTATED        3
  DEL PEAK  3(3P24.1) WILD-TYPE     16
D9V10, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                           6                            12
  CLUS_2                          15                            26
  CLUS_3                          13                            14
  CLUS_4                           1                            14
  CLUS_5                          20                             3
  CLUS_6                           6                            12
  CLUS_7                           3                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK  4(3Q26.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3Q26.1) MUTATED        9     12      6     45     21
  DEL PEAK  4(3Q26.1) WILD-TYPE     28     28      4      5      4
D10V1, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                           9                            28
  CLUS_2                          12                            28
  CLUS_3                           6                             4
  CLUS_4                          45                             5
  CLUS_5                          21                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3Q26.1) MUTATED       21     47     25
  DEL PEAK  4(3Q26.1) WILD-TYPE     19     30     20
D10V2, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                          21                            19
  CLUS_2                          47                            30
  CLUS_3                          25                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q26.1) MUTATED       10     15     16      5
  DEL PEAK  4(3Q26.1) WILD-TYPE      6      5      7     13
D10V3, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                          10                             6
  CLUS_2                          15                             5
  CLUS_3                          16                             7
  CLUS_4                           5                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3Q26.1) MUTATED       13     15     18
  DEL PEAK  4(3Q26.1) WILD-TYPE     18      3     10
D10V4, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                          13                            18
  CLUS_2                          15                             3
  CLUS_3                          18                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q26.1) MUTATED       20     44     22      7
  DEL PEAK  4(3Q26.1) WILD-TYPE     12     21     22     14
D10V5, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                          20                            12
  CLUS_2                          44                            21
  CLUS_3                          22                            22
  CLUS_4                           7                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q26.1) MUTATED        6     47     33      7
  DEL PEAK  4(3Q26.1) WILD-TYPE     28     17     10     14
D10V6, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                           6                            28
  CLUS_2                          47                            17
  CLUS_3                          33                            10
  CLUS_4                           7                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3Q26.1) MUTATED       38     16     39
  DEL PEAK  4(3Q26.1) WILD-TYPE     25     28     16
D10V7, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                          38                            25
  CLUS_2                          16                            28
  CLUS_3                          39                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q26.1) MUTATED       39     38      5     11
  DEL PEAK  4(3Q26.1) WILD-TYPE     27     16     13     13
D10V8, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                          39                            27
  CLUS_2                          38                            16
  CLUS_3                           5                            13
  CLUS_4                          11                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3Q26.1) MUTATED       10     36      8     23     16
  DEL PEAK  4(3Q26.1) WILD-TYPE     23     14      8     10     13
D10V9, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                          10                            23
  CLUS_2                          36                            14
  CLUS_3                           8                             8
  CLUS_4                          23                            10
  CLUS_5                          16                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3Q26.1) MUTATED        5     31     16      9     19      5
  DEL PEAK  4(3Q26.1) WILD-TYPE     13     10     11      6      4     13
                               vv
clus                            CLUS_7
  DEL PEAK  4(3Q26.1) MUTATED        8
  DEL PEAK  4(3Q26.1) WILD-TYPE     11
D10V10, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                           5                            13
  CLUS_2                          31                            10
  CLUS_3                          16                            11
  CLUS_4                           9                             6
  CLUS_5                          19                             4
  CLUS_6                           5                            13
  CLUS_7                           8                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK  5(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q22.1) MUTATED        1      6      0      5      1
  DEL PEAK  5(4Q22.1) WILD-TYPE     36     34     10     45     24
D11V1, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           1                            36
  CLUS_2                           6                            34
  CLUS_3                           0                            10
  CLUS_4                           5                            45
  CLUS_5                           1                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q22.1) MUTATED        2      6      5
  DEL PEAK  5(4Q22.1) WILD-TYPE     38     71     40
D11V2, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                           6                            71
  CLUS_3                           5                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q22.1) MUTATED        1      4      2      0
  DEL PEAK  5(4Q22.1) WILD-TYPE     15     16     21     18
D11V3, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           1                            15
  CLUS_2                           4                            16
  CLUS_3                           2                            21
  CLUS_4                           0                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q22.1) MUTATED        2      1      4
  DEL PEAK  5(4Q22.1) WILD-TYPE     29     17     24
D11V4, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           2                            29
  CLUS_2                           1                            17
  CLUS_3                           4                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q22.1) MUTATED        1      3      8      1
  DEL PEAK  5(4Q22.1) WILD-TYPE     31     62     36     20
D11V5, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           1                            31
  CLUS_2                           3                            62
  CLUS_3                           8                            36
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q22.1) MUTATED        3      4      6      0
  DEL PEAK  5(4Q22.1) WILD-TYPE     31     60     37     21
D11V6, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           3                            31
  CLUS_2                           4                            60
  CLUS_3                           6                            37
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q22.1) MUTATED        7      4      2
  DEL PEAK  5(4Q22.1) WILD-TYPE     56     40     53
D11V7, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           7                            56
  CLUS_2                           4                            40
  CLUS_3                           2                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q22.1) MUTATED        7      2      2      2
  DEL PEAK  5(4Q22.1) WILD-TYPE     59     52     16     22
D11V8, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           7                            59
  CLUS_2                           2                            52
  CLUS_3                           2                            16
  CLUS_4                           2                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q22.1) MUTATED        3      3      0      5      2
  DEL PEAK  5(4Q22.1) WILD-TYPE     30     47     16     28     27
D11V9, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           3                            47
  CLUS_3                           0                            16
  CLUS_4                           5                            28
  CLUS_5                           2                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4Q22.1) MUTATED        0      2      2      0      5      2
  DEL PEAK  5(4Q22.1) WILD-TYPE     18     39     25     15     18     16
                               vv
clus                            CLUS_7
  DEL PEAK  5(4Q22.1) MUTATED        2
  DEL PEAK  5(4Q22.1) WILD-TYPE     17
D11V10, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           0                            18
  CLUS_2                           2                            39
  CLUS_3                           2                            25
  CLUS_4                           0                            15
  CLUS_5                           5                            18
  CLUS_6                           2                            16
  CLUS_7                           2                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK  6(4Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q34.2) MUTATED        0      7      1      4      1
  DEL PEAK  6(4Q34.2) WILD-TYPE     37     33      9     46     24
D12V1, multiclass
        clus
vv       DEL PEAK  6(4Q34.2) MUTATED DEL PEAK  6(4Q34.2) WILD-TYPE
  CLUS_1                           0                            37
  CLUS_2                           7                            33
  CLUS_3                           1                             9
  CLUS_4                           4                            46
  CLUS_5                           1                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.2) MUTATED        1      7      5
  DEL PEAK  6(4Q34.2) WILD-TYPE     39     70     40
D12V2, multiclass
        clus
vv       DEL PEAK  6(4Q34.2) MUTATED DEL PEAK  6(4Q34.2) WILD-TYPE
  CLUS_1                           1                            39
  CLUS_2                           7                            70
  CLUS_3                           5                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.2) MUTATED        1      2      3      0
  DEL PEAK  6(4Q34.2) WILD-TYPE     15     18     20     18
D12V3, multiclass
        clus
vv       DEL PEAK  6(4Q34.2) MUTATED DEL PEAK  6(4Q34.2) WILD-TYPE
  CLUS_1                           1                            15
  CLUS_2                           2                            18
  CLUS_3                           3                            20
  CLUS_4                           0                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.2) MUTATED        1      1      4
  DEL PEAK  6(4Q34.2) WILD-TYPE     30     17     24
D12V4, multiclass
        clus
vv       DEL PEAK  6(4Q34.2) MUTATED DEL PEAK  6(4Q34.2) WILD-TYPE
  CLUS_1                           1                            30
  CLUS_2                           1                            17
  CLUS_3                           4                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.2) MUTATED        1      3      8      1
  DEL PEAK  6(4Q34.2) WILD-TYPE     31     62     36     20
D12V5, multiclass
        clus
vv       DEL PEAK  6(4Q34.2) MUTATED DEL PEAK  6(4Q34.2) WILD-TYPE
  CLUS_1                           1                            31
  CLUS_2                           3                            62
  CLUS_3                           8                            36
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.2) MUTATED        3      5      5      0
  DEL PEAK  6(4Q34.2) WILD-TYPE     31     59     38     21
D12V6, multiclass
        clus
vv       DEL PEAK  6(4Q34.2) MUTATED DEL PEAK  6(4Q34.2) WILD-TYPE
  CLUS_1                           3                            31
  CLUS_2                           5                            59
  CLUS_3                           5                            38
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.2) MUTATED        7      3      3
  DEL PEAK  6(4Q34.2) WILD-TYPE     56     41     52
D12V7, multiclass
        clus
vv       DEL PEAK  6(4Q34.2) MUTATED DEL PEAK  6(4Q34.2) WILD-TYPE
  CLUS_1                           7                            56
  CLUS_2                           3                            41
  CLUS_3                           3                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.2) MUTATED        7      4      1      1
  DEL PEAK  6(4Q34.2) WILD-TYPE     59     50     17     23
D12V8, multiclass
        clus
vv       DEL PEAK  6(4Q34.2) MUTATED DEL PEAK  6(4Q34.2) WILD-TYPE
  CLUS_1                           7                            59
  CLUS_2                           4                            50
  CLUS_3                           1                            17
  CLUS_4                           1                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q34.2) MUTATED        2      3      1      6      1
  DEL PEAK  6(4Q34.2) WILD-TYPE     31     47     15     27     28
D12V9, multiclass
        clus
vv       DEL PEAK  6(4Q34.2) MUTATED DEL PEAK  6(4Q34.2) WILD-TYPE
  CLUS_1                           2                            31
  CLUS_2                           3                            47
  CLUS_3                           1                            15
  CLUS_4                           6                            27
  CLUS_5                           1                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q34.2) MUTATED        2      2      1      1      5      1
  DEL PEAK  6(4Q34.2) WILD-TYPE     16     39     26     14     18     17
                               vv
clus                            CLUS_7
  DEL PEAK  6(4Q34.2) MUTATED        1
  DEL PEAK  6(4Q34.2) WILD-TYPE     18
D12V10, multiclass
        clus
vv       DEL PEAK  6(4Q34.2) MUTATED DEL PEAK  6(4Q34.2) WILD-TYPE
  CLUS_1                           2                            16
  CLUS_2                           2                            39
  CLUS_3                           1                            26
  CLUS_4                           1                            14
  CLUS_5                           5                            18
  CLUS_6                           1                            17
  CLUS_7                           1                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK  7(5Q15) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q15) MUTATED        0      2      0      7      3
  DEL PEAK  7(5Q15) WILD-TYPE     37     38     10     43     22
D13V1, multiclass
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  CLUS_1                         0                          37
  CLUS_2                         2                          38
  CLUS_3                         0                          10
  CLUS_4                         7                          43
  CLUS_5                         3                          22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q15) MUTATED        3      7      2
  DEL PEAK  7(5Q15) WILD-TYPE     37     70     43
D13V2, multiclass
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  CLUS_1                         3                          37
  CLUS_2                         7                          70
  CLUS_3                         2                          43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q15) MUTATED        3      4      0      1
  DEL PEAK  7(5Q15) WILD-TYPE     13     16     23     17
D13V3, multiclass
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  CLUS_1                         3                          13
  CLUS_2                         4                          16
  CLUS_3                         0                          23
  CLUS_4                         1                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q15) MUTATED        4      2      2
  DEL PEAK  7(5Q15) WILD-TYPE     27     16     26
D13V4, multiclass
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  CLUS_1                         4                          27
  CLUS_2                         2                          16
  CLUS_3                         2                          26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q15) MUTATED        2      5      4      1
  DEL PEAK  7(5Q15) WILD-TYPE     30     60     40     20
D13V5, multiclass
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  CLUS_1                         2                          30
  CLUS_2                         5                          60
  CLUS_3                         4                          40
  CLUS_4                         1                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q15) MUTATED        3      5      3      1
  DEL PEAK  7(5Q15) WILD-TYPE     31     59     40     20
D13V6, multiclass
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  CLUS_1                         3                          31
  CLUS_2                         5                          59
  CLUS_3                         3                          40
  CLUS_4                         1                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q15) MUTATED        4      3      5
  DEL PEAK  7(5Q15) WILD-TYPE     59     41     50
D13V7, multiclass
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  CLUS_1                         4                          59
  CLUS_2                         3                          41
  CLUS_3                         5                          50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q15) MUTATED        4      5      3      0
  DEL PEAK  7(5Q15) WILD-TYPE     62     49     15     24
D13V8, multiclass
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  CLUS_1                         4                          62
  CLUS_2                         5                          49
  CLUS_3                         3                          15
  CLUS_4                         0                          24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q15) MUTATED        4      1      1      4      2
  DEL PEAK  7(5Q15) WILD-TYPE     29     49     15     29     27
D13V9, multiclass
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  CLUS_1                         4                          29
  CLUS_2                         1                          49
  CLUS_3                         1                          15
  CLUS_4                         4                          29
  CLUS_5                         2                          27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  7(5Q15) MUTATED        0      3      1      2      3      3      0
  DEL PEAK  7(5Q15) WILD-TYPE     18     38     26     13     20     15     19
D13V10, multiclass
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  CLUS_1                         0                          18
  CLUS_2                         3                          38
  CLUS_3                         1                          26
  CLUS_4                         2                          13
  CLUS_5                         3                          20
  CLUS_6                         3                          15
  CLUS_7                         0                          19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK  8(6P12.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(6P12.3) MUTATED        4      3      0      3      0
  DEL PEAK  8(6P12.3) WILD-TYPE     33     37     10     47     25
D14V1, multiclass
        clus
vv       DEL PEAK  8(6P12.3) MUTATED DEL PEAK  8(6P12.3) WILD-TYPE
  CLUS_1                           4                            33
  CLUS_2                           3                            37
  CLUS_3                           0                            10
  CLUS_4                           3                            47
  CLUS_5                           0                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6P12.3) MUTATED        2      3      5
  DEL PEAK  8(6P12.3) WILD-TYPE     38     74     40
D14V2, multiclass
        clus
vv       DEL PEAK  8(6P12.3) MUTATED DEL PEAK  8(6P12.3) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                           3                            74
  CLUS_3                           5                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6P12.3) MUTATED        0      1      0      0
  DEL PEAK  8(6P12.3) WILD-TYPE     16     19     23     18
D14V3, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  8(6P12.3) MUTATED"
clus
  DEL PEAK  8(6P12.3) MUTATED DEL PEAK  8(6P12.3) WILD-TYPE 
                            1                            76 
                   TCGA-P8-A5KC                    TCGA-P8-A5KD 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-P8-A6RX                    TCGA-P8-A6RY 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-PR-A5PF                    TCGA-PR-A5PG 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-PR-A5PH                    TCGA-QR-A6GO 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-QR-A6GT                    TCGA-QR-A6GU 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-QR-A6GZ                    TCGA-QR-A6H2 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-QR-A70W                    TCGA-QT-A5XJ 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-QT-A5XK                    TCGA-QT-A5XL 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-QT-A5XM                    TCGA-QT-A5XN 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-QT-A5XO                    TCGA-QT-A5XP 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-QT-A69Q                    TCGA-QT-A7U0 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RM-A68T                    TCGA-RM-A68W 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RT-A6Y9                    TCGA-RT-A6YA 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RT-A6YC                    TCGA-RW-A67V 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RW-A67X                    TCGA-RW-A680 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RW-A681                    TCGA-RW-A685 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RW-A688                    TCGA-RW-A689 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RW-A68A                    TCGA-RW-A68B 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RW-A68C                    TCGA-RW-A68D 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RW-A68F                    TCGA-RW-A68G 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RW-A8AZ                    TCGA-RX-A8JQ 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-S7-A7WL                    TCGA-S7-A7WM 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-S7-A7WN                    TCGA-S7-A7WP 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-S7-A7WQ                    TCGA-S7-A7WR 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-S7-A7WU                    TCGA-S7-A7WV 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-S7-A7WW                    TCGA-S7-A7WX 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-S7-A7X0                    TCGA-S7-A7X1 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-S7-A7X2                    TCGA-SA-A6C2 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-SP-A6QJ                    TCGA-SR-A6MQ 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-SR-A6MX                    TCGA-SR-A6MY 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-SR-A6MZ                    TCGA-TT-A6YN 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-W2-A7HC                    TCGA-W2-A7HF 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-WB-A80Q                    TCGA-WB-A814 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-WB-A815                    TCGA-WB-A817 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-WB-A818                    TCGA-WB-A819 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-WB-A81G                    TCGA-WB-A81M 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-WB-A81P                    TCGA-WB-A81T 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-WB-A81V                    TCGA-WB-A81W 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6P12.3) MUTATED        1      0      0
  DEL PEAK  8(6P12.3) WILD-TYPE     30     18     28
D14V4, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  8(6P12.3) MUTATED"
clus
  DEL PEAK  8(6P12.3) MUTATED DEL PEAK  8(6P12.3) WILD-TYPE 
                            1                            76 
                   TCGA-P8-A5KC                    TCGA-P8-A5KD 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-P8-A6RX                    TCGA-P8-A6RY 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-PR-A5PF                    TCGA-PR-A5PG 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-PR-A5PH                    TCGA-QR-A6GO 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-QR-A6GT                    TCGA-QR-A6GU 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-QR-A6GZ                    TCGA-QR-A6H2 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-QR-A70W                    TCGA-QT-A5XJ 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-QT-A5XK                    TCGA-QT-A5XL 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-QT-A5XM                    TCGA-QT-A5XN 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-QT-A5XO                    TCGA-QT-A5XP 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-QT-A69Q                    TCGA-QT-A7U0 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RM-A68T                    TCGA-RM-A68W 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RT-A6Y9                    TCGA-RT-A6YA 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RT-A6YC                    TCGA-RW-A67V 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RW-A67X                    TCGA-RW-A680 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RW-A681                    TCGA-RW-A685 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RW-A688                    TCGA-RW-A689 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RW-A68A                    TCGA-RW-A68B 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RW-A68C                    TCGA-RW-A68D 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RW-A68F                    TCGA-RW-A68G 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-RW-A8AZ                    TCGA-RX-A8JQ 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-S7-A7WL                    TCGA-S7-A7WM 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-S7-A7WN                    TCGA-S7-A7WP 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-S7-A7WQ                    TCGA-S7-A7WR 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-S7-A7WU                    TCGA-S7-A7WV 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-S7-A7WW                    TCGA-S7-A7WX 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-S7-A7X0                    TCGA-S7-A7X1 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-S7-A7X2                    TCGA-SA-A6C2 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-SP-A6QJ                    TCGA-SR-A6MQ 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-SR-A6MX                    TCGA-SR-A6MY 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-SR-A6MZ                    TCGA-TT-A6YN 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-W2-A7HC                    TCGA-W2-A7HF 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-WB-A80Q                    TCGA-WB-A814 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-WB-A815                    TCGA-WB-A817 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-WB-A818                    TCGA-WB-A819 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-WB-A81G                    TCGA-WB-A81M 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-WB-A81P                    TCGA-WB-A81T 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                   TCGA-WB-A81V                    TCGA-WB-A81W 
"DEL PEAK  8(6P12.3) WILD-TYPE" "DEL PEAK  8(6P12.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6P12.3) MUTATED        1      1      4      4
  DEL PEAK  8(6P12.3) WILD-TYPE     31     64     40     17
D14V5, multiclass
        clus
vv       DEL PEAK  8(6P12.3) MUTATED DEL PEAK  8(6P12.3) WILD-TYPE
  CLUS_1                           1                            31
  CLUS_2                           1                            64
  CLUS_3                           4                            40
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6P12.3) MUTATED        2      2      2      4
  DEL PEAK  8(6P12.3) WILD-TYPE     32     62     41     17
D14V6, multiclass
        clus
vv       DEL PEAK  8(6P12.3) MUTATED DEL PEAK  8(6P12.3) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                           2                            62
  CLUS_3                           2                            41
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6P12.3) MUTATED        3      5      2
  DEL PEAK  8(6P12.3) WILD-TYPE     60     39     53
D14V7, multiclass
        clus
vv       DEL PEAK  8(6P12.3) MUTATED DEL PEAK  8(6P12.3) WILD-TYPE
  CLUS_1                           3                            60
  CLUS_2                           5                            39
  CLUS_3                           2                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6P12.3) MUTATED        3      2      1      4
  DEL PEAK  8(6P12.3) WILD-TYPE     63     52     17     20
D14V8, multiclass
        clus
vv       DEL PEAK  8(6P12.3) MUTATED DEL PEAK  8(6P12.3) WILD-TYPE
  CLUS_1                           3                            63
  CLUS_2                           2                            52
  CLUS_3                           1                            17
  CLUS_4                           4                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(6P12.3) MUTATED        1      3      0      3      3
  DEL PEAK  8(6P12.3) WILD-TYPE     32     47     16     30     26
D14V9, multiclass
        clus
vv       DEL PEAK  8(6P12.3) MUTATED DEL PEAK  8(6P12.3) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                           3                            47
  CLUS_3                           0                            16
  CLUS_4                           3                            30
  CLUS_5                           3                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(6P12.3) MUTATED        0      2      1      0      2      1
  DEL PEAK  8(6P12.3) WILD-TYPE     18     39     26     15     21     17
                               vv
clus                            CLUS_7
  DEL PEAK  8(6P12.3) MUTATED        4
  DEL PEAK  8(6P12.3) WILD-TYPE     15
D14V10, multiclass
        clus
vv       DEL PEAK  8(6P12.3) MUTATED DEL PEAK  8(6P12.3) WILD-TYPE
  CLUS_1                           0                            18
  CLUS_2                           2                            39
  CLUS_3                           1                            26
  CLUS_4                           0                            15
  CLUS_5                           2                            21
  CLUS_6                           1                            17
  CLUS_7                           4                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK  9(6Q16.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6Q16.1) MUTATED        3      3      4     11      3
  DEL PEAK  9(6Q16.1) WILD-TYPE     34     37      6     39     22
D15V1, multiclass
        clus
vv       DEL PEAK  9(6Q16.1) MUTATED DEL PEAK  9(6Q16.1) WILD-TYPE
  CLUS_1                           3                            34
  CLUS_2                           3                            37
  CLUS_3                           4                             6
  CLUS_4                          11                            39
  CLUS_5                           3                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q16.1) MUTATED        2     16      6
  DEL PEAK  9(6Q16.1) WILD-TYPE     38     61     39
D15V2, multiclass
        clus
vv       DEL PEAK  9(6Q16.1) MUTATED DEL PEAK  9(6Q16.1) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                          16                            61
  CLUS_3                           6                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q16.1) MUTATED        2      2      7      0
  DEL PEAK  9(6Q16.1) WILD-TYPE     14     18     16     18
D15V3, multiclass
        clus
vv       DEL PEAK  9(6Q16.1) MUTATED DEL PEAK  9(6Q16.1) WILD-TYPE
  CLUS_1                           2                            14
  CLUS_2                           2                            18
  CLUS_3                           7                            16
  CLUS_4                           0                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q16.1) MUTATED        2      4      5
  DEL PEAK  9(6Q16.1) WILD-TYPE     29     14     23
D15V4, multiclass
        clus
vv       DEL PEAK  9(6Q16.1) MUTATED DEL PEAK  9(6Q16.1) WILD-TYPE
  CLUS_1                           2                            29
  CLUS_2                           4                            14
  CLUS_3                           5                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q16.1) MUTATED        1     15      4      4
  DEL PEAK  9(6Q16.1) WILD-TYPE     31     50     40     17
D15V5, multiclass
        clus
vv       DEL PEAK  9(6Q16.1) MUTATED DEL PEAK  9(6Q16.1) WILD-TYPE
  CLUS_1                           1                            31
  CLUS_2                          15                            50
  CLUS_3                           4                            40
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q16.1) MUTATED        1     16      3      4
  DEL PEAK  9(6Q16.1) WILD-TYPE     33     48     40     17
D15V6, multiclass
        clus
vv       DEL PEAK  9(6Q16.1) MUTATED DEL PEAK  9(6Q16.1) WILD-TYPE
  CLUS_1                           1                            33
  CLUS_2                          16                            48
  CLUS_3                           3                            40
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q16.1) MUTATED        4      6     14
  DEL PEAK  9(6Q16.1) WILD-TYPE     59     38     41
D15V7, multiclass
        clus
vv       DEL PEAK  9(6Q16.1) MUTATED DEL PEAK  9(6Q16.1) WILD-TYPE
  CLUS_1                           4                            59
  CLUS_2                           6                            38
  CLUS_3                          14                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q16.1) MUTATED        4     15      1      4
  DEL PEAK  9(6Q16.1) WILD-TYPE     62     39     17     20
D15V8, multiclass
        clus
vv       DEL PEAK  9(6Q16.1) MUTATED DEL PEAK  9(6Q16.1) WILD-TYPE
  CLUS_1                           4                            62
  CLUS_2                          15                            39
  CLUS_3                           1                            17
  CLUS_4                           4                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6Q16.1) MUTATED        1     13      2      5      3
  DEL PEAK  9(6Q16.1) WILD-TYPE     32     37     14     28     26
D15V9, multiclass
        clus
vv       DEL PEAK  9(6Q16.1) MUTATED DEL PEAK  9(6Q16.1) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                          13                            37
  CLUS_3                           2                            14
  CLUS_4                           5                            28
  CLUS_5                           3                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6Q16.1) MUTATED        0     11      1      4      3      1
  DEL PEAK  9(6Q16.1) WILD-TYPE     18     30     26     11     20     17
                               vv
clus                            CLUS_7
  DEL PEAK  9(6Q16.1) MUTATED        4
  DEL PEAK  9(6Q16.1) WILD-TYPE     15
D15V10, multiclass
        clus
vv       DEL PEAK  9(6Q16.1) MUTATED DEL PEAK  9(6Q16.1) WILD-TYPE
  CLUS_1                           0                            18
  CLUS_2                          11                            30
  CLUS_3                           1                            26
  CLUS_4                           4                            11
  CLUS_5                           3                            20
  CLUS_6                           1                            17
  CLUS_7                           4                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK 10(8P22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(8P22) MUTATED        9      2      0     11      3
  DEL PEAK 10(8P22) WILD-TYPE     28     38     10     39     22
D16V1, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         9                          28
  CLUS_2                         2                          38
  CLUS_3                         0                          10
  CLUS_4                        11                          39
  CLUS_5                         3                          22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8P22) MUTATED        5     16      4
  DEL PEAK 10(8P22) WILD-TYPE     35     61     41
D16V2, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         5                          35
  CLUS_2                        16                          61
  CLUS_3                         4                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P22) MUTATED        2      3      5      1
  DEL PEAK 10(8P22) WILD-TYPE     14     17     18     17
D16V3, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         2                          14
  CLUS_2                         3                          17
  CLUS_3                         5                          18
  CLUS_4                         1                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8P22) MUTATED        3      3      5
  DEL PEAK 10(8P22) WILD-TYPE     28     15     23
D16V4, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         3                          28
  CLUS_2                         3                          15
  CLUS_3                         5                          23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P22) MUTATED        3     18      3      1
  DEL PEAK 10(8P22) WILD-TYPE     29     47     41     20
D16V5, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         3                          29
  CLUS_2                        18                          47
  CLUS_3                         3                          41
  CLUS_4                         1                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P22) MUTATED        5     17      2      1
  DEL PEAK 10(8P22) WILD-TYPE     29     47     41     20
D16V6, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         5                          29
  CLUS_2                        17                          47
  CLUS_3                         2                          41
  CLUS_4                         1                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8P22) MUTATED        8      4     13
  DEL PEAK 10(8P22) WILD-TYPE     55     40     42
D16V7, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         8                          55
  CLUS_2                         4                          40
  CLUS_3                        13                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P22) MUTATED        8     13      2      2
  DEL PEAK 10(8P22) WILD-TYPE     58     41     16     22
D16V8, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         8                          58
  CLUS_2                        13                          41
  CLUS_3                         2                          16
  CLUS_4                         2                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(8P22) MUTATED        5     13      1      4      2
  DEL PEAK 10(8P22) WILD-TYPE     28     37     15     29     27
D16V9, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         5                          28
  CLUS_2                        13                          37
  CLUS_3                         1                          15
  CLUS_4                         4                          29
  CLUS_5                         2                          27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 10(8P22) MUTATED        4     11      3      2      1      2      2
  DEL PEAK 10(8P22) WILD-TYPE     14     30     24     13     22     16     17
D16V10, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         4                          14
  CLUS_2                        11                          30
  CLUS_3                         3                          24
  CLUS_4                         2                          13
  CLUS_5                         1                          22
  CLUS_6                         2                          16
  CLUS_7                         2                          17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK 11(8Q23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(8Q23.3) MUTATED        1      1      0      7      4
  DEL PEAK 11(8Q23.3) WILD-TYPE     36     39     10     43     21
D17V1, multiclass
        clus
vv       DEL PEAK 11(8Q23.3) MUTATED DEL PEAK 11(8Q23.3) WILD-TYPE
  CLUS_1                           1                            36
  CLUS_2                           1                            39
  CLUS_3                           0                            10
  CLUS_4                           7                            43
  CLUS_5                           4                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8Q23.3) MUTATED        3      6      4
  DEL PEAK 11(8Q23.3) WILD-TYPE     37     71     41
D17V2, multiclass
        clus
vv       DEL PEAK 11(8Q23.3) MUTATED DEL PEAK 11(8Q23.3) WILD-TYPE
  CLUS_1                           3                            37
  CLUS_2                           6                            71
  CLUS_3                           4                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8Q23.3) MUTATED        0      2      1      0
  DEL PEAK 11(8Q23.3) WILD-TYPE     16     18     22     18
D17V3, multiclass
        clus
vv       DEL PEAK 11(8Q23.3) MUTATED DEL PEAK 11(8Q23.3) WILD-TYPE
  CLUS_1                           0                            16
  CLUS_2                           2                            18
  CLUS_3                           1                            22
  CLUS_4                           0                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8Q23.3) MUTATED        1      1      1
  DEL PEAK 11(8Q23.3) WILD-TYPE     30     17     27
D17V4, multiclass
        clus
vv       DEL PEAK 11(8Q23.3) MUTATED DEL PEAK 11(8Q23.3) WILD-TYPE
  CLUS_1                           1                            30
  CLUS_2                           1                            17
  CLUS_3                           1                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8Q23.3) MUTATED        4      7      1      1
  DEL PEAK 11(8Q23.3) WILD-TYPE     28     58     43     20
D17V5, multiclass
        clus
vv       DEL PEAK 11(8Q23.3) MUTATED DEL PEAK 11(8Q23.3) WILD-TYPE
  CLUS_1                           4                            28
  CLUS_2                           7                            58
  CLUS_3                           1                            43
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8Q23.3) MUTATED        3      7      3      0
  DEL PEAK 11(8Q23.3) WILD-TYPE     31     57     40     21
D17V6, multiclass
        clus
vv       DEL PEAK 11(8Q23.3) MUTATED DEL PEAK 11(8Q23.3) WILD-TYPE
  CLUS_1                           3                            31
  CLUS_2                           7                            57
  CLUS_3                           3                            40
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8Q23.3) MUTATED        6      0      7
  DEL PEAK 11(8Q23.3) WILD-TYPE     57     44     48
D17V7, multiclass
        clus
vv       DEL PEAK 11(8Q23.3) MUTATED DEL PEAK 11(8Q23.3) WILD-TYPE
  CLUS_1                           6                            57
  CLUS_2                           0                            44
  CLUS_3                           7                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8Q23.3) MUTATED        7      5      1      0
  DEL PEAK 11(8Q23.3) WILD-TYPE     59     49     17     24
D17V8, multiclass
        clus
vv       DEL PEAK 11(8Q23.3) MUTATED DEL PEAK 11(8Q23.3) WILD-TYPE
  CLUS_1                           7                            59
  CLUS_2                           5                            49
  CLUS_3                           1                            17
  CLUS_4                           0                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(8Q23.3) MUTATED        3      6      0      2      2
  DEL PEAK 11(8Q23.3) WILD-TYPE     30     44     16     31     27
D17V9, multiclass
        clus
vv       DEL PEAK 11(8Q23.3) MUTATED DEL PEAK 11(8Q23.3) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           6                            44
  CLUS_3                           0                            16
  CLUS_4                           2                            31
  CLUS_5                           2                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(8Q23.3) MUTATED        2      5      4      1      0      1
  DEL PEAK 11(8Q23.3) WILD-TYPE     16     36     23     14     23     17
                               vv
clus                            CLUS_7
  DEL PEAK 11(8Q23.3) MUTATED        0
  DEL PEAK 11(8Q23.3) WILD-TYPE     19
D17V10, multiclass
        clus
vv       DEL PEAK 11(8Q23.3) MUTATED DEL PEAK 11(8Q23.3) WILD-TYPE
  CLUS_1                           2                            16
  CLUS_2                           5                            36
  CLUS_3                           4                            23
  CLUS_4                           1                            14
  CLUS_5                           0                            23
  CLUS_6                           1                            17
  CLUS_7                           0                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK 12(9P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(9P24.2) MUTATED        6      2      2      2      3
  DEL PEAK 12(9P24.2) WILD-TYPE     31     38      8     48     22
D18V1, multiclass
        clus
vv       DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE
  CLUS_1                           6                            31
  CLUS_2                           2                            38
  CLUS_3                           2                             8
  CLUS_4                           2                            48
  CLUS_5                           3                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P24.2) MUTATED        3     11      1
  DEL PEAK 12(9P24.2) WILD-TYPE     37     66     44
D18V2, multiclass
        clus
vv       DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE
  CLUS_1                           3                            37
  CLUS_2                          11                            66
  CLUS_3                           1                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P24.2) MUTATED        0      0      4      1
  DEL PEAK 12(9P24.2) WILD-TYPE     16     20     19     17
D18V3, multiclass
        clus
vv       DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE
  CLUS_1                           0                            16
  CLUS_2                           0                            20
  CLUS_3                           4                            19
  CLUS_4                           1                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P24.2) MUTATED        1      0      4
  DEL PEAK 12(9P24.2) WILD-TYPE     30     18     24
D18V4, multiclass
        clus
vv       DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE
  CLUS_1                           1                            30
  CLUS_2                           0                            18
  CLUS_3                           4                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P24.2) MUTATED        1     10      4      0
  DEL PEAK 12(9P24.2) WILD-TYPE     31     55     40     21
D18V5, multiclass
        clus
vv       DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE
  CLUS_1                           1                            31
  CLUS_2                          10                            55
  CLUS_3                           4                            40
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P24.2) MUTATED        4      9      2      0
  DEL PEAK 12(9P24.2) WILD-TYPE     30     55     41     21
D18V6, multiclass
        clus
vv       DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE
  CLUS_1                           4                            30
  CLUS_2                           9                            55
  CLUS_3                           2                            41
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P24.2) MUTATED        4      4      7
  DEL PEAK 12(9P24.2) WILD-TYPE     59     40     48
D18V7, multiclass
        clus
vv       DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE
  CLUS_1                           4                            59
  CLUS_2                           4                            40
  CLUS_3                           7                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P24.2) MUTATED        4      8      3      0
  DEL PEAK 12(9P24.2) WILD-TYPE     62     46     15     24
D18V8, multiclass
        clus
vv       DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE
  CLUS_1                           4                            62
  CLUS_2                           8                            46
  CLUS_3                           3                            15
  CLUS_4                           0                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(9P24.2) MUTATED        5      7      1      2      0
  DEL PEAK 12(9P24.2) WILD-TYPE     28     43     15     31     29
D18V9, multiclass
        clus
vv       DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE
  CLUS_1                           5                            28
  CLUS_2                           7                            43
  CLUS_3                           1                            15
  CLUS_4                           2                            31
  CLUS_5                           0                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(9P24.2) MUTATED        1      8      2      0      1      3
  DEL PEAK 12(9P24.2) WILD-TYPE     17     33     25     15     22     15
                               vv
clus                            CLUS_7
  DEL PEAK 12(9P24.2) MUTATED        0
  DEL PEAK 12(9P24.2) WILD-TYPE     19
D18V10, multiclass
        clus
vv       DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE
  CLUS_1                           1                            17
  CLUS_2                           8                            33
  CLUS_3                           2                            25
  CLUS_4                           0                            15
  CLUS_5                           1                            22
  CLUS_6                           3                            15
  CLUS_7                           0                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 13(9Q21.12) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(9Q21.12) MUTATED        3      2      2      4      3
  DEL PEAK 13(9Q21.12) WILD-TYPE     34     38      8     46     22
D19V1, multiclass
        clus
vv       DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE
  CLUS_1                            3                             34
  CLUS_2                            2                             38
  CLUS_3                            2                              8
  CLUS_4                            4                             46
  CLUS_5                            3                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.12) MUTATED        5      8      1
  DEL PEAK 13(9Q21.12) WILD-TYPE     35     69     44
D19V2, multiclass
        clus
vv       DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE
  CLUS_1                            5                             35
  CLUS_2                            8                             69
  CLUS_3                            1                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9Q21.12) MUTATED        0      0      5      1
  DEL PEAK 13(9Q21.12) WILD-TYPE     16     20     18     17
D19V3, multiclass
        clus
vv       DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE
  CLUS_1                            0                             16
  CLUS_2                            0                             20
  CLUS_3                            5                             18
  CLUS_4                            1                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.12) MUTATED        1      0      5
  DEL PEAK 13(9Q21.12) WILD-TYPE     30     18     23
D19V4, multiclass
        clus
vv       DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                            0                             18
  CLUS_3                            5                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9Q21.12) MUTATED        3      8      3      0
  DEL PEAK 13(9Q21.12) WILD-TYPE     29     57     41     21
D19V5, multiclass
        clus
vv       DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE
  CLUS_1                            3                             29
  CLUS_2                            8                             57
  CLUS_3                            3                             41
  CLUS_4                            0                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9Q21.12) MUTATED        3      8      3      0
  DEL PEAK 13(9Q21.12) WILD-TYPE     31     56     40     21
D19V6, multiclass
        clus
vv       DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE
  CLUS_1                            3                             31
  CLUS_2                            8                             56
  CLUS_3                            3                             40
  CLUS_4                            0                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.12) MUTATED        6      2      6
  DEL PEAK 13(9Q21.12) WILD-TYPE     57     42     49
D19V7, multiclass
        clus
vv       DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE
  CLUS_1                            6                             57
  CLUS_2                            2                             42
  CLUS_3                            6                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9Q21.12) MUTATED        4      7      3      0
  DEL PEAK 13(9Q21.12) WILD-TYPE     62     47     15     24
D19V8, multiclass
        clus
vv       DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE
  CLUS_1                            4                             62
  CLUS_2                            7                             47
  CLUS_3                            3                             15
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(9Q21.12) MUTATED        5      5      0      3      1
  DEL PEAK 13(9Q21.12) WILD-TYPE     28     45     16     30     28
D19V9, multiclass
        clus
vv       DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE
  CLUS_1                            5                             28
  CLUS_2                            5                             45
  CLUS_3                            0                             16
  CLUS_4                            3                             30
  CLUS_5                            1                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(9Q21.12) MUTATED        1      6      2      0      2      3
  DEL PEAK 13(9Q21.12) WILD-TYPE     17     35     25     15     21     15
                                vv
clus                             CLUS_7
  DEL PEAK 13(9Q21.12) MUTATED        0
  DEL PEAK 13(9Q21.12) WILD-TYPE     19
D19V10, multiclass
        clus
vv       DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE
  CLUS_1                            1                             17
  CLUS_2                            6                             35
  CLUS_3                            2                             25
  CLUS_4                            0                             15
  CLUS_5                            2                             21
  CLUS_6                            3                             15
  CLUS_7                            0                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 14(11P15.4) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(11P15.4) MUTATED       10     21      0     18      9
  DEL PEAK 14(11P15.4) WILD-TYPE     27     19     10     32     16
D20V1, multiclass
        clus
vv       DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  CLUS_1                           10                             27
  CLUS_2                           21                             19
  CLUS_3                            0                             10
  CLUS_4                           18                             32
  CLUS_5                            9                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11P15.4) MUTATED       22     14     22
  DEL PEAK 14(11P15.4) WILD-TYPE     18     63     23
D20V2, multiclass
        clus
vv       DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  CLUS_1                           22                             18
  CLUS_2                           14                             63
  CLUS_3                           22                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11P15.4) MUTATED        4     11      5      8
  DEL PEAK 14(11P15.4) WILD-TYPE     12      9     18     10
D20V3, multiclass
        clus
vv       DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                           11                              9
  CLUS_3                            5                             18
  CLUS_4                            8                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11P15.4) MUTATED       12      3     13
  DEL PEAK 14(11P15.4) WILD-TYPE     19     15     15
D20V4, multiclass
        clus
vv       DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  CLUS_1                           12                             19
  CLUS_2                            3                             15
  CLUS_3                           13                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11P15.4) MUTATED       12     14     26      6
  DEL PEAK 14(11P15.4) WILD-TYPE     20     51     18     15
D20V5, multiclass
        clus
vv       DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  CLUS_1                           12                             20
  CLUS_2                           14                             51
  CLUS_3                           26                             18
  CLUS_4                            6                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11P15.4) MUTATED       11     10     31      6
  DEL PEAK 14(11P15.4) WILD-TYPE     23     54     12     15
D20V6, multiclass
        clus
vv       DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  CLUS_1                           11                             23
  CLUS_2                           10                             54
  CLUS_3                           31                             12
  CLUS_4                            6                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11P15.4) MUTATED       36     10     12
  DEL PEAK 14(11P15.4) WILD-TYPE     27     34     43
D20V7, multiclass
        clus
vv       DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  CLUS_1                           36                             27
  CLUS_2                           10                             34
  CLUS_3                           12                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11P15.4) MUTATED       39      8      5      6
  DEL PEAK 14(11P15.4) WILD-TYPE     27     46     13     18
D20V8, multiclass
        clus
vv       DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  CLUS_1                           39                             27
  CLUS_2                            8                             46
  CLUS_3                            5                             13
  CLUS_4                            6                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(11P15.4) MUTATED       10      8      3     23     13
  DEL PEAK 14(11P15.4) WILD-TYPE     23     42     13     10     16
D20V9, multiclass
        clus
vv       DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  CLUS_1                           10                             23
  CLUS_2                            8                             42
  CLUS_3                            3                             13
  CLUS_4                           23                             10
  CLUS_5                           13                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(11P15.4) MUTATED        9      7      8      2     21      5
  DEL PEAK 14(11P15.4) WILD-TYPE      9     34     19     13      2     13
                                vv
clus                             CLUS_7
  DEL PEAK 14(11P15.4) MUTATED        5
  DEL PEAK 14(11P15.4) WILD-TYPE     14
D20V10, multiclass
        clus
vv       DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  CLUS_1                            9                              9
  CLUS_2                            7                             34
  CLUS_3                            8                             19
  CLUS_4                            2                             13
  CLUS_5                           21                              2
  CLUS_6                            5                             13
  CLUS_7                            5                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK 15(11Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(11Q22.1) MUTATED        8     22      1     19      0
  DEL PEAK 15(11Q22.1) WILD-TYPE     29     18      9     31     25
D21V1, multiclass
        clus
vv       DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                            8                             29
  CLUS_2                           22                             18
  CLUS_3                            1                              9
  CLUS_4                           19                             31
  CLUS_5                            0                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q22.1) MUTATED       15     18     17
  DEL PEAK 15(11Q22.1) WILD-TYPE     25     59     28
D21V2, multiclass
        clus
vv       DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                           15                             25
  CLUS_2                           18                             59
  CLUS_3                           17                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q22.1) MUTATED        5     11      6      9
  DEL PEAK 15(11Q22.1) WILD-TYPE     11      9     17      9
D21V3, multiclass
        clus
vv       DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                           11                              9
  CLUS_3                            6                             17
  CLUS_4                            9                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q22.1) MUTATED       15      3     13
  DEL PEAK 15(11Q22.1) WILD-TYPE     16     15     15
D21V4, multiclass
        clus
vv       DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                           15                             16
  CLUS_2                            3                             15
  CLUS_3                           13                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q22.1) MUTATED        8     11     25      6
  DEL PEAK 15(11Q22.1) WILD-TYPE     24     54     19     15
D21V5, multiclass
        clus
vv       DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                            8                             24
  CLUS_2                           11                             54
  CLUS_3                           25                             19
  CLUS_4                            6                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q22.1) MUTATED       11     12     22      5
  DEL PEAK 15(11Q22.1) WILD-TYPE     23     52     21     16
D21V6, multiclass
        clus
vv       DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                           11                             23
  CLUS_2                           12                             52
  CLUS_3                           22                             21
  CLUS_4                            5                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q22.1) MUTATED       29     13      8
  DEL PEAK 15(11Q22.1) WILD-TYPE     34     31     47
D21V7, multiclass
        clus
vv       DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                           29                             34
  CLUS_2                           13                             31
  CLUS_3                            8                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q22.1) MUTATED       31      8      3      8
  DEL PEAK 15(11Q22.1) WILD-TYPE     35     46     15     16
D21V8, multiclass
        clus
vv       DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                           31                             35
  CLUS_2                            8                             46
  CLUS_3                            3                             15
  CLUS_4                            8                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(11Q22.1) MUTATED        9      8      3     20     10
  DEL PEAK 15(11Q22.1) WILD-TYPE     24     42     13     13     19
D21V9, multiclass
        clus
vv       DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                            9                             24
  CLUS_2                            8                             42
  CLUS_3                            3                             13
  CLUS_4                           20                             13
  CLUS_5                           10                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(11Q22.1) MUTATED        8      8      7      1     17      3
  DEL PEAK 15(11Q22.1) WILD-TYPE     10     33     20     14      6     15
                                vv
clus                             CLUS_7
  DEL PEAK 15(11Q22.1) MUTATED        6
  DEL PEAK 15(11Q22.1) WILD-TYPE     13
D21V10, multiclass
        clus
vv       DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                            8                             10
  CLUS_2                            8                             33
  CLUS_3                            7                             20
  CLUS_4                            1                             14
  CLUS_5                           17                              6
  CLUS_6                            3                             15
  CLUS_7                            6                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK 16(12Q21.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(12Q21.33) MUTATED        4      1      1      2      0
  DEL PEAK 16(12Q21.33) WILD-TYPE     33     39      9     48     25
D22V1, multiclass
        clus
vv       DEL PEAK 16(12Q21.33) MUTATED DEL PEAK 16(12Q21.33) WILD-TYPE
  CLUS_1                             4                              33
  CLUS_2                             1                              39
  CLUS_3                             1                               9
  CLUS_4                             2                              48
  CLUS_5                             0                              25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(12Q21.33) MUTATED        2      5      1
  DEL PEAK 16(12Q21.33) WILD-TYPE     38     72     44
D22V2, multiclass
        clus
vv       DEL PEAK 16(12Q21.33) MUTATED DEL PEAK 16(12Q21.33) WILD-TYPE
  CLUS_1                             2                              38
  CLUS_2                             5                              72
  CLUS_3                             1                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(12Q21.33) MUTATED        0      1      2      0
  DEL PEAK 16(12Q21.33) WILD-TYPE     16     19     21     18
D22V3, multiclass
        clus
vv       DEL PEAK 16(12Q21.33) MUTATED DEL PEAK 16(12Q21.33) WILD-TYPE
  CLUS_1                             0                              16
  CLUS_2                             1                              19
  CLUS_3                             2                              21
  CLUS_4                             0                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(12Q21.33) MUTATED        1      0      2
  DEL PEAK 16(12Q21.33) WILD-TYPE     30     18     26
D22V4, multiclass
        clus
vv       DEL PEAK 16(12Q21.33) MUTATED DEL PEAK 16(12Q21.33) WILD-TYPE
  CLUS_1                             1                              30
  CLUS_2                             0                              18
  CLUS_3                             2                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(12Q21.33) MUTATED        1      3      3      1
  DEL PEAK 16(12Q21.33) WILD-TYPE     31     62     41     20
D22V5, multiclass
        clus
vv       DEL PEAK 16(12Q21.33) MUTATED DEL PEAK 16(12Q21.33) WILD-TYPE
  CLUS_1                             1                              31
  CLUS_2                             3                              62
  CLUS_3                             3                              41
  CLUS_4                             1                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(12Q21.33) MUTATED        2      4      1      1
  DEL PEAK 16(12Q21.33) WILD-TYPE     32     60     42     20
D22V6, multiclass
        clus
vv       DEL PEAK 16(12Q21.33) MUTATED DEL PEAK 16(12Q21.33) WILD-TYPE
  CLUS_1                             2                              32
  CLUS_2                             4                              60
  CLUS_3                             1                              42
  CLUS_4                             1                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(12Q21.33) MUTATED        2      2      4
  DEL PEAK 16(12Q21.33) WILD-TYPE     61     42     51
D22V7, multiclass
        clus
vv       DEL PEAK 16(12Q21.33) MUTATED DEL PEAK 16(12Q21.33) WILD-TYPE
  CLUS_1                             2                              61
  CLUS_2                             2                              42
  CLUS_3                             4                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(12Q21.33) MUTATED        2      4      1      1
  DEL PEAK 16(12Q21.33) WILD-TYPE     64     50     17     23
D22V8, multiclass
        clus
vv       DEL PEAK 16(12Q21.33) MUTATED DEL PEAK 16(12Q21.33) WILD-TYPE
  CLUS_1                             2                              64
  CLUS_2                             4                              50
  CLUS_3                             1                              17
  CLUS_4                             1                              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(12Q21.33) MUTATED        1      4      0      2      1
  DEL PEAK 16(12Q21.33) WILD-TYPE     32     46     16     31     28
D22V9, multiclass
        clus
vv       DEL PEAK 16(12Q21.33) MUTATED DEL PEAK 16(12Q21.33) WILD-TYPE
  CLUS_1                             1                              32
  CLUS_2                             4                              46
  CLUS_3                             0                              16
  CLUS_4                             2                              31
  CLUS_5                             1                              28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(12Q21.33) MUTATED        0      4      1      0      1      1
  DEL PEAK 16(12Q21.33) WILD-TYPE     18     37     26     15     22     17
                                 vv
clus                              CLUS_7
  DEL PEAK 16(12Q21.33) MUTATED        1
  DEL PEAK 16(12Q21.33) WILD-TYPE     18
D22V10, multiclass
        clus
vv       DEL PEAK 16(12Q21.33) MUTATED DEL PEAK 16(12Q21.33) WILD-TYPE
  CLUS_1                             0                              18
  CLUS_2                             4                              37
  CLUS_3                             1                              26
  CLUS_4                             0                              15
  CLUS_5                             1                              22
  CLUS_6                             1                              17
  CLUS_7                             1                              18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK 17(13Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(13Q22.3) MUTATED        2      2      0      3      1
  DEL PEAK 17(13Q22.3) WILD-TYPE     35     38     10     47     24
D23V1, multiclass
        clus
vv       DEL PEAK 17(13Q22.3) MUTATED DEL PEAK 17(13Q22.3) WILD-TYPE
  CLUS_1                            2                             35
  CLUS_2                            2                             38
  CLUS_3                            0                             10
  CLUS_4                            3                             47
  CLUS_5                            1                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q22.3) MUTATED        1      5      2
  DEL PEAK 17(13Q22.3) WILD-TYPE     39     72     43
D23V2, multiclass
        clus
vv       DEL PEAK 17(13Q22.3) MUTATED DEL PEAK 17(13Q22.3) WILD-TYPE
  CLUS_1                            1                             39
  CLUS_2                            5                             72
  CLUS_3                            2                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(13Q22.3) MUTATED        0      2      0      1
  DEL PEAK 17(13Q22.3) WILD-TYPE     16     18     23     17
D23V3, multiclass
        clus
vv       DEL PEAK 17(13Q22.3) MUTATED DEL PEAK 17(13Q22.3) WILD-TYPE
  CLUS_1                            0                             16
  CLUS_2                            2                             18
  CLUS_3                            0                             23
  CLUS_4                            1                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q22.3) MUTATED        2      0      1
  DEL PEAK 17(13Q22.3) WILD-TYPE     29     18     27
D23V4, multiclass
        clus
vv       DEL PEAK 17(13Q22.3) MUTATED DEL PEAK 17(13Q22.3) WILD-TYPE
  CLUS_1                            2                             29
  CLUS_2                            0                             18
  CLUS_3                            1                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(13Q22.3) MUTATED        0      4      4      0
  DEL PEAK 17(13Q22.3) WILD-TYPE     32     61     40     21
D23V5, multiclass
        clus
vv       DEL PEAK 17(13Q22.3) MUTATED DEL PEAK 17(13Q22.3) WILD-TYPE
  CLUS_1                            0                             32
  CLUS_2                            4                             61
  CLUS_3                            4                             40
  CLUS_4                            0                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(13Q22.3) MUTATED        3      4      1      0
  DEL PEAK 17(13Q22.3) WILD-TYPE     31     60     42     21
D23V6, multiclass
        clus
vv       DEL PEAK 17(13Q22.3) MUTATED DEL PEAK 17(13Q22.3) WILD-TYPE
  CLUS_1                            3                             31
  CLUS_2                            4                             60
  CLUS_3                            1                             42
  CLUS_4                            0                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q22.3) MUTATED        3      2      3
  DEL PEAK 17(13Q22.3) WILD-TYPE     60     42     52
D23V7, multiclass
        clus
vv       DEL PEAK 17(13Q22.3) MUTATED DEL PEAK 17(13Q22.3) WILD-TYPE
  CLUS_1                            3                             60
  CLUS_2                            2                             42
  CLUS_3                            3                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(13Q22.3) MUTATED        3      4      1      0
  DEL PEAK 17(13Q22.3) WILD-TYPE     63     50     17     24
D23V8, multiclass
        clus
vv       DEL PEAK 17(13Q22.3) MUTATED DEL PEAK 17(13Q22.3) WILD-TYPE
  CLUS_1                            3                             63
  CLUS_2                            4                             50
  CLUS_3                            1                             17
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(13Q22.3) MUTATED        1      3      2      2      0
  DEL PEAK 17(13Q22.3) WILD-TYPE     32     47     14     31     29
D23V9, multiclass
        clus
vv       DEL PEAK 17(13Q22.3) MUTATED DEL PEAK 17(13Q22.3) WILD-TYPE
  CLUS_1                            1                             32
  CLUS_2                            3                             47
  CLUS_3                            2                             14
  CLUS_4                            2                             31
  CLUS_5                            0                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(13Q22.3) MUTATED        0      3      2      1      1      1
  DEL PEAK 17(13Q22.3) WILD-TYPE     18     38     25     14     22     17
                                vv
clus                             CLUS_7
  DEL PEAK 17(13Q22.3) MUTATED        0
  DEL PEAK 17(13Q22.3) WILD-TYPE     19
D23V10, multiclass
        clus
vv       DEL PEAK 17(13Q22.3) MUTATED DEL PEAK 17(13Q22.3) WILD-TYPE
  CLUS_1                            0                             18
  CLUS_2                            3                             38
  CLUS_3                            2                             25
  CLUS_4                            1                             14
  CLUS_5                            1                             22
  CLUS_6                            1                             17
  CLUS_7                            0                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK 18(16Q21) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(16Q21) MUTATED        0      2      0      3      0
  DEL PEAK 18(16Q21) WILD-TYPE     37     38     10     47     25
D24V1, multiclass
        clus
vv       DEL PEAK 18(16Q21) MUTATED DEL PEAK 18(16Q21) WILD-TYPE
  CLUS_1                          0                           37
  CLUS_2                          2                           38
  CLUS_3                          0                           10
  CLUS_4                          3                           47
  CLUS_5                          0                           25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(16Q21) MUTATED        2      2      1
  DEL PEAK 18(16Q21) WILD-TYPE     38     75     44
D24V2, multiclass
        clus
vv       DEL PEAK 18(16Q21) MUTATED DEL PEAK 18(16Q21) WILD-TYPE
  CLUS_1                          2                           38
  CLUS_2                          2                           75
  CLUS_3                          1                           44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(16Q21) MUTATED        1      1      0      1
  DEL PEAK 18(16Q21) WILD-TYPE     15     19     23     17
D24V3, multiclass
        clus
vv       DEL PEAK 18(16Q21) MUTATED DEL PEAK 18(16Q21) WILD-TYPE
  CLUS_1                          1                           15
  CLUS_2                          1                           19
  CLUS_3                          0                           23
  CLUS_4                          1                           17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(16Q21) MUTATED        2      0      1
  DEL PEAK 18(16Q21) WILD-TYPE     29     18     27
D24V4, multiclass
        clus
vv       DEL PEAK 18(16Q21) MUTATED DEL PEAK 18(16Q21) WILD-TYPE
  CLUS_1                          2                           29
  CLUS_2                          0                           18
  CLUS_3                          1                           27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(16Q21) MUTATED        2      1      2      0
  DEL PEAK 18(16Q21) WILD-TYPE     30     64     42     21
D24V5, multiclass
        clus
vv       DEL PEAK 18(16Q21) MUTATED DEL PEAK 18(16Q21) WILD-TYPE
  CLUS_1                          2                           30
  CLUS_2                          1                           64
  CLUS_3                          2                           42
  CLUS_4                          0                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(16Q21) MUTATED        4      1      0      0
  DEL PEAK 18(16Q21) WILD-TYPE     30     63     43     21
D24V6, multiclass
        clus
vv       DEL PEAK 18(16Q21) MUTATED DEL PEAK 18(16Q21) WILD-TYPE
  CLUS_1                          4                           30
  CLUS_2                          1                           63
  CLUS_3                          0                           43
  CLUS_4                          0                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(16Q21) MUTATED        3      2      0
  DEL PEAK 18(16Q21) WILD-TYPE     60     42     55
D24V7, multiclass
        clus
vv       DEL PEAK 18(16Q21) MUTATED DEL PEAK 18(16Q21) WILD-TYPE
  CLUS_1                          3                           60
  CLUS_2                          2                           42
  CLUS_3                          0                           55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(16Q21) MUTATED        3      1      1      0
  DEL PEAK 18(16Q21) WILD-TYPE     63     53     17     24
D24V8, multiclass
        clus
vv       DEL PEAK 18(16Q21) MUTATED DEL PEAK 18(16Q21) WILD-TYPE
  CLUS_1                          3                           63
  CLUS_2                          1                           53
  CLUS_3                          1                           17
  CLUS_4                          0                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(16Q21) MUTATED        2      0      0      2      1
  DEL PEAK 18(16Q21) WILD-TYPE     31     50     16     31     28
D24V9, multiclass
        clus
vv       DEL PEAK 18(16Q21) MUTATED DEL PEAK 18(16Q21) WILD-TYPE
  CLUS_1                          2                           31
  CLUS_2                          0                           50
  CLUS_3                          0                           16
  CLUS_4                          2                           31
  CLUS_5                          1                           28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 18(16Q21) MUTATED        1      1      2      0      0      1      0
  DEL PEAK 18(16Q21) WILD-TYPE     17     40     25     15     23     17     19
D24V10, multiclass
        clus
vv       DEL PEAK 18(16Q21) MUTATED DEL PEAK 18(16Q21) WILD-TYPE
  CLUS_1                          1                           17
  CLUS_2                          1                           40
  CLUS_3                          2                           25
  CLUS_4                          0                           15
  CLUS_5                          0                           23
  CLUS_6                          1                           17
  CLUS_7                          0                           19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK 19(17P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(17P13.2) MUTATED       12     12      8     28      4
  DEL PEAK 19(17P13.2) WILD-TYPE     25     28      2     22     21
D25V1, multiclass
        clus
vv       DEL PEAK 19(17P13.2) MUTATED DEL PEAK 19(17P13.2) WILD-TYPE
  CLUS_1                           12                             25
  CLUS_2                           12                             28
  CLUS_3                            8                              2
  CLUS_4                           28                             22
  CLUS_5                            4                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(17P13.2) MUTATED        9     42     13
  DEL PEAK 19(17P13.2) WILD-TYPE     31     35     32
D25V2, multiclass
        clus
vv       DEL PEAK 19(17P13.2) MUTATED DEL PEAK 19(17P13.2) WILD-TYPE
  CLUS_1                            9                             31
  CLUS_2                           42                             35
  CLUS_3                           13                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(17P13.2) MUTATED       10      9     10      6
  DEL PEAK 19(17P13.2) WILD-TYPE      6     11     13     12
D25V3, multiclass
        clus
vv       DEL PEAK 19(17P13.2) MUTATED DEL PEAK 19(17P13.2) WILD-TYPE
  CLUS_1                           10                              6
  CLUS_2                            9                             11
  CLUS_3                           10                             13
  CLUS_4                            6                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(17P13.2) MUTATED       10     12     13
  DEL PEAK 19(17P13.2) WILD-TYPE     21      6     15
D25V4, multiclass
        clus
vv       DEL PEAK 19(17P13.2) MUTATED DEL PEAK 19(17P13.2) WILD-TYPE
  CLUS_1                           10                             21
  CLUS_2                           12                              6
  CLUS_3                           13                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(17P13.2) MUTATED        9     36     14      5
  DEL PEAK 19(17P13.2) WILD-TYPE     23     29     30     16
D25V5, multiclass
        clus
vv       DEL PEAK 19(17P13.2) MUTATED DEL PEAK 19(17P13.2) WILD-TYPE
  CLUS_1                            9                             23
  CLUS_2                           36                             29
  CLUS_3                           14                             30
  CLUS_4                            5                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(17P13.2) MUTATED       10     36     13      5
  DEL PEAK 19(17P13.2) WILD-TYPE     24     28     30     16
D25V6, multiclass
        clus
vv       DEL PEAK 19(17P13.2) MUTATED DEL PEAK 19(17P13.2) WILD-TYPE
  CLUS_1                           10                             24
  CLUS_2                           36                             28
  CLUS_3                           13                             30
  CLUS_4                            5                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(17P13.2) MUTATED       21     13     30
  DEL PEAK 19(17P13.2) WILD-TYPE     42     31     25
D25V7, multiclass
        clus
vv       DEL PEAK 19(17P13.2) MUTATED DEL PEAK 19(17P13.2) WILD-TYPE
  CLUS_1                           21                             42
  CLUS_2                           13                             31
  CLUS_3                           30                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(17P13.2) MUTATED       18     30      9      7
  DEL PEAK 19(17P13.2) WILD-TYPE     48     24      9     17
D25V8, multiclass
        clus
vv       DEL PEAK 19(17P13.2) MUTATED DEL PEAK 19(17P13.2) WILD-TYPE
  CLUS_1                           18                             48
  CLUS_2                           30                             24
  CLUS_3                            9                              9
  CLUS_4                            7                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(17P13.2) MUTATED       12     24      9     12      7
  DEL PEAK 19(17P13.2) WILD-TYPE     21     26      7     21     22
D25V9, multiclass
        clus
vv       DEL PEAK 19(17P13.2) MUTATED DEL PEAK 19(17P13.2) WILD-TYPE
  CLUS_1                           12                             21
  CLUS_2                           24                             26
  CLUS_3                            9                              7
  CLUS_4                           12                             21
  CLUS_5                            7                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(17P13.2) MUTATED        8     20      4      9      9      9
  DEL PEAK 19(17P13.2) WILD-TYPE     10     21     23      6     14      9
                                vv
clus                             CLUS_7
  DEL PEAK 19(17P13.2) MUTATED        5
  DEL PEAK 19(17P13.2) WILD-TYPE     14
D25V10, multiclass
        clus
vv       DEL PEAK 19(17P13.2) MUTATED DEL PEAK 19(17P13.2) WILD-TYPE
  CLUS_1                            8                             10
  CLUS_2                           20                             21
  CLUS_3                            4                             23
  CLUS_4                            9                              6
  CLUS_5                            9                             14
  CLUS_6                            9                              9
  CLUS_7                            5                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 20(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(17Q11.2) MUTATED        6      7      4     23      2
  DEL PEAK 20(17Q11.2) WILD-TYPE     31     33      6     27     23
D26V1, multiclass
        clus
vv       DEL PEAK 20(17Q11.2) MUTATED DEL PEAK 20(17Q11.2) WILD-TYPE
  CLUS_1                            6                             31
  CLUS_2                            7                             33
  CLUS_3                            4                              6
  CLUS_4                           23                             27
  CLUS_5                            2                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(17Q11.2) MUTATED        4     28     10
  DEL PEAK 20(17Q11.2) WILD-TYPE     36     49     35
D26V2, multiclass
        clus
vv       DEL PEAK 20(17Q11.2) MUTATED DEL PEAK 20(17Q11.2) WILD-TYPE
  CLUS_1                            4                             36
  CLUS_2                           28                             49
  CLUS_3                           10                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(17Q11.2) MUTATED        4      6      8      0
  DEL PEAK 20(17Q11.2) WILD-TYPE     12     14     15     18
D26V3, multiclass
        clus
vv       DEL PEAK 20(17Q11.2) MUTATED DEL PEAK 20(17Q11.2) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            6                             14
  CLUS_3                            8                             15
  CLUS_4                            0                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(17Q11.2) MUTATED        4      4     10
  DEL PEAK 20(17Q11.2) WILD-TYPE     27     14     18
D26V4, multiclass
        clus
vv       DEL PEAK 20(17Q11.2) MUTATED DEL PEAK 20(17Q11.2) WILD-TYPE
  CLUS_1                            4                             27
  CLUS_2                            4                             14
  CLUS_3                           10                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(17Q11.2) MUTATED        5     25      9      3
  DEL PEAK 20(17Q11.2) WILD-TYPE     27     40     35     18
D26V5, multiclass
        clus
vv       DEL PEAK 20(17Q11.2) MUTATED DEL PEAK 20(17Q11.2) WILD-TYPE
  CLUS_1                            5                             27
  CLUS_2                           25                             40
  CLUS_3                            9                             35
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(17Q11.2) MUTATED        6     27      6      3
  DEL PEAK 20(17Q11.2) WILD-TYPE     28     37     37     18
D26V6, multiclass
        clus
vv       DEL PEAK 20(17Q11.2) MUTATED DEL PEAK 20(17Q11.2) WILD-TYPE
  CLUS_1                            6                             28
  CLUS_2                           27                             37
  CLUS_3                            6                             37
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(17Q11.2) MUTATED       13      9     20
  DEL PEAK 20(17Q11.2) WILD-TYPE     50     35     35
D26V7, multiclass
        clus
vv       DEL PEAK 20(17Q11.2) MUTATED DEL PEAK 20(17Q11.2) WILD-TYPE
  CLUS_1                           13                             50
  CLUS_2                            9                             35
  CLUS_3                           20                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(17Q11.2) MUTATED       12     21      4      5
  DEL PEAK 20(17Q11.2) WILD-TYPE     54     33     14     19
D26V8, multiclass
        clus
vv       DEL PEAK 20(17Q11.2) MUTATED DEL PEAK 20(17Q11.2) WILD-TYPE
  CLUS_1                           12                             54
  CLUS_2                           21                             33
  CLUS_3                            4                             14
  CLUS_4                            5                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(17Q11.2) MUTATED        6     18      4     10      4
  DEL PEAK 20(17Q11.2) WILD-TYPE     27     32     12     23     25
D26V9, multiclass
        clus
vv       DEL PEAK 20(17Q11.2) MUTATED DEL PEAK 20(17Q11.2) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                           18                             32
  CLUS_3                            4                             12
  CLUS_4                           10                             23
  CLUS_5                            4                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(17Q11.2) MUTATED        6     18      1      3      7      4
  DEL PEAK 20(17Q11.2) WILD-TYPE     12     23     26     12     16     14
                                vv
clus                             CLUS_7
  DEL PEAK 20(17Q11.2) MUTATED        3
  DEL PEAK 20(17Q11.2) WILD-TYPE     16
D26V10, multiclass
        clus
vv       DEL PEAK 20(17Q11.2) MUTATED DEL PEAK 20(17Q11.2) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                           18                             23
  CLUS_3                            1                             26
  CLUS_4                            3                             12
  CLUS_5                            7                             16
  CLUS_6                            4                             14
  CLUS_7                            3                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 21(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(22Q13.31) MUTATED       18      5      9     29      4
  DEL PEAK 21(22Q13.31) WILD-TYPE     19     35      1     21     21
D27V1, multiclass
        clus
vv       DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE
  CLUS_1                            18                              19
  CLUS_2                             5                              35
  CLUS_3                             9                               1
  CLUS_4                            29                              21
  CLUS_5                             4                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q13.31) MUTATED       10     40     15
  DEL PEAK 21(22Q13.31) WILD-TYPE     30     37     30
D27V2, multiclass
        clus
vv       DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE
  CLUS_1                            10                              30
  CLUS_2                            40                              37
  CLUS_3                            15                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q13.31) MUTATED        7      8     10      5
  DEL PEAK 21(22Q13.31) WILD-TYPE      9     12     13     13
D27V3, multiclass
        clus
vv       DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE
  CLUS_1                             7                               9
  CLUS_2                             8                              12
  CLUS_3                            10                              13
  CLUS_4                             5                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q13.31) MUTATED        8     11     11
  DEL PEAK 21(22Q13.31) WILD-TYPE     23      7     17
D27V4, multiclass
        clus
vv       DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE
  CLUS_1                             8                              23
  CLUS_2                            11                               7
  CLUS_3                            11                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q13.31) MUTATED        8     36     13      8
  DEL PEAK 21(22Q13.31) WILD-TYPE     24     29     31     13
D27V5, multiclass
        clus
vv       DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE
  CLUS_1                             8                              24
  CLUS_2                            36                              29
  CLUS_3                            13                              31
  CLUS_4                             8                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q13.31) MUTATED       13     37      8      7
  DEL PEAK 21(22Q13.31) WILD-TYPE     21     27     35     14
D27V6, multiclass
        clus
vv       DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE
  CLUS_1                            13                              21
  CLUS_2                            37                              27
  CLUS_3                             8                              35
  CLUS_4                             7                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q13.31) MUTATED       16     20     29
  DEL PEAK 21(22Q13.31) WILD-TYPE     47     24     26
D27V7, multiclass
        clus
vv       DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE
  CLUS_1                            16                              47
  CLUS_2                            20                              24
  CLUS_3                            29                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q13.31) MUTATED       18     29      7     11
  DEL PEAK 21(22Q13.31) WILD-TYPE     48     25     11     13
D27V8, multiclass
        clus
vv       DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE
  CLUS_1                            18                              48
  CLUS_2                            29                              25
  CLUS_3                             7                              11
  CLUS_4                            11                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(22Q13.31) MUTATED       11     28      8      9      9
  DEL PEAK 21(22Q13.31) WILD-TYPE     22     22      8     24     20
D27V9, multiclass
        clus
vv       DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE
  CLUS_1                            11                              22
  CLUS_2                            28                              22
  CLUS_3                             8                               8
  CLUS_4                             9                              24
  CLUS_5                             9                              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(22Q13.31) MUTATED        6     22      7      9      5      7
  DEL PEAK 21(22Q13.31) WILD-TYPE     12     19     20      6     18     11
                                 vv
clus                              CLUS_7
  DEL PEAK 21(22Q13.31) MUTATED        9
  DEL PEAK 21(22Q13.31) WILD-TYPE     10
D27V10, multiclass
        clus
vv       DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE
  CLUS_1                             6                              12
  CLUS_2                            22                              19
  CLUS_3                             7                              20
  CLUS_4                             9                               6
  CLUS_5                             5                              18
  CLUS_6                             7                              11
  CLUS_7                             9                              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 22(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(XP21.1) MUTATED        6      4      2     24     10
  DEL PEAK 22(XP21.1) WILD-TYPE     31     36      8     26     15
D28V1, multiclass
        clus
vv       DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE
  CLUS_1                           6                            31
  CLUS_2                           4                            36
  CLUS_3                           2                             8
  CLUS_4                          24                            26
  CLUS_5                          10                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(XP21.1) MUTATED        9     32      5
  DEL PEAK 22(XP21.1) WILD-TYPE     31     45     40
D28V2, multiclass
        clus
vv       DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE
  CLUS_1                           9                            31
  CLUS_2                          32                            45
  CLUS_3                           5                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(XP21.1) MUTATED        7      7      8      1
  DEL PEAK 22(XP21.1) WILD-TYPE      9     13     15     17
D28V3, multiclass
        clus
vv       DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE
  CLUS_1                           7                             9
  CLUS_2                           7                            13
  CLUS_3                           8                            15
  CLUS_4                           1                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(XP21.1) MUTATED        6      7     10
  DEL PEAK 22(XP21.1) WILD-TYPE     25     11     18
D28V4, multiclass
        clus
vv       DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE
  CLUS_1                           6                            25
  CLUS_2                           7                            11
  CLUS_3                          10                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(XP21.1) MUTATED       10     25      9      2
  DEL PEAK 22(XP21.1) WILD-TYPE     22     40     35     19
D28V5, multiclass
        clus
vv       DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE
  CLUS_1                          10                            22
  CLUS_2                          25                            40
  CLUS_3                           9                            35
  CLUS_4                           2                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(XP21.1) MUTATED        7     27     11      1
  DEL PEAK 22(XP21.1) WILD-TYPE     27     37     32     20
D28V6, multiclass
        clus
vv       DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE
  CLUS_1                           7                            27
  CLUS_2                          27                            37
  CLUS_3                          11                            32
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(XP21.1) MUTATED       12      7     27
  DEL PEAK 22(XP21.1) WILD-TYPE     51     37     28
D28V7, multiclass
        clus
vv       DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE
  CLUS_1                          12                            51
  CLUS_2                           7                            37
  CLUS_3                          27                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(XP21.1) MUTATED       15     21      7      3
  DEL PEAK 22(XP21.1) WILD-TYPE     51     33     11     21
D28V8, multiclass
        clus
vv       DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE
  CLUS_1                          15                            51
  CLUS_2                          21                            33
  CLUS_3                           7                            11
  CLUS_4                           3                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(XP21.1) MUTATED        9     20      3      8      6
  DEL PEAK 22(XP21.1) WILD-TYPE     24     30     13     25     23
D28V9, multiclass
        clus
vv       DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE
  CLUS_1                           9                            24
  CLUS_2                          20                            30
  CLUS_3                           3                            13
  CLUS_4                           8                            25
  CLUS_5                           6                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(XP21.1) MUTATED        3     19      6      5      5      7
  DEL PEAK 22(XP21.1) WILD-TYPE     15     22     21     10     18     11
                               vv
clus                            CLUS_7
  DEL PEAK 22(XP21.1) MUTATED        1
  DEL PEAK 22(XP21.1) WILD-TYPE     18
D28V10, multiclass
        clus
vv       DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE
  CLUS_1                           3                            15
  CLUS_2                          19                            22
  CLUS_3                           6                            21
  CLUS_4                           5                            10
  CLUS_5                           5                            18
  CLUS_6                           7                            11
  CLUS_7                           1                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
