[1] "ofn"        "-oTPRAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PRAD-TP/22553796/PRAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PRAD-TP/22533739/transformed.cor.cli.txt"

nPatients in clinical file=498, in cluster file=492, common to both=492
[1]  63 492
[1] "AMP PEAK  1(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         40                         452 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         40                         452 
[1] "AMP PEAK  2(3Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE 
                           75                           417 
  AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE 
                           75                           417 
[1] "AMP PEAK  3(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                           86                           406 
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                           86                           406 
[1] "AMP PEAK  4(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE 
                           20                           472 
  AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE 
                           20                           472 
[1] "AMP PEAK  5(4Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE 
                           22                           470 
  AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE 
                           22                           470 
[1] "AMP PEAK  6(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE 
                           28                           464 
  AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE 
                           28                           464 
[1] "AMP PEAK  7(7P14.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE 
                          104                           388 
  AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE 
                          104                           388 
[1] "AMP PEAK  8(7Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE 
                          101                           391 
  AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE 
                          101                           391 
[1] "AMP PEAK  9(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE 
                            67                            425 
  AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE 
                            67                            425 
[1] "AMP PEAK 10(8Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE 
                          157                           335 
  AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE 
                          157                           335 
[1] "AMP PEAK 11(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                           152                            340 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                           152                            340 
[1] "AMP PEAK 12(9Q33.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE 
                           62                           430 
  AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE 
                           62                           430 
[1] "AMP PEAK 13(11Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE 
                            48                            444 
  AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE 
                            48                            444 
[1] "AMP PEAK 14(12Q23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE 
                            36                            456 
  AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE 
                            36                            456 
[1] "AMP PEAK 15(13Q12.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE 
                             25                             467 
  AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE 
                             25                             467 
[1] "AMP PEAK 16(14Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE 
                            30                            462 
  AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE 
                            30                            462 
[1] "AMP PEAK 17(15Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE 
                            16                            476 
  AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE 
                            16                            476 
[1] "AMP PEAK 18(16Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE 
                            30                            462 
  AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE 
                            30                            462 
[1] "AMP PEAK 19(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17P11.2) MUTATED AMP PEAK 19(17P11.2) WILD-TYPE 
                            22                            470 
  AMP PEAK 19(17P11.2) MUTATED AMP PEAK 19(17P11.2) WILD-TYPE 
                            22                            470 
[1] "AMP PEAK 20(17Q23.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(17Q23.2) MUTATED AMP PEAK 20(17Q23.2) WILD-TYPE 
                            25                            467 
  AMP PEAK 20(17Q23.2) MUTATED AMP PEAK 20(17Q23.2) WILD-TYPE 
                            25                            467 
[1] "AMP PEAK 21(18Q21.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(18Q21.31) MUTATED AMP PEAK 21(18Q21.31) WILD-TYPE 
                             13                             479 
  AMP PEAK 21(18Q21.31) MUTATED AMP PEAK 21(18Q21.31) WILD-TYPE 
                             13                             479 
[1] "AMP PEAK 22(19Q13.43) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(19Q13.43) MUTATED AMP PEAK 22(19Q13.43) WILD-TYPE 
                             19                             473 
  AMP PEAK 22(19Q13.43) MUTATED AMP PEAK 22(19Q13.43) WILD-TYPE 
                             19                             473 
[1] "AMP PEAK 23(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(20Q13.2) MUTATED AMP PEAK 23(20Q13.2) WILD-TYPE 
                            45                            447 
  AMP PEAK 23(20Q13.2) MUTATED AMP PEAK 23(20Q13.2) WILD-TYPE 
                            45                            447 
[1] "AMP PEAK 24(XP22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE 
                           27                           465 
  AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE 
                           27                           465 
[1] "AMP PEAK 25(XQ12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(XQ12) MUTATED AMP PEAK 25(XQ12) WILD-TYPE 
                         16                         476 
  AMP PEAK 25(XQ12) MUTATED AMP PEAK 25(XQ12) WILD-TYPE 
                         16                         476 
[1] "AMP PEAK 26(XQ21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE 
                           14                           478 
  AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE 
                           14                           478 
[1] "AMP PEAK 27(XQ21.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(XQ21.31) MUTATED AMP PEAK 27(XQ21.31) WILD-TYPE 
                            13                            479 
  AMP PEAK 27(XQ21.31) MUTATED AMP PEAK 27(XQ21.31) WILD-TYPE 
                            13                            479 
[1] "AMP PEAK 28(XQ25) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE 
                         19                         473 
  AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE 
                         19                         473 
[1] "DEL PEAK  1(1P31.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE 
                           60                           432 
  DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE 
                           60                           432 
[1] "DEL PEAK  2(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           58                           434 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           58                           434 
[1] "DEL PEAK  3(1Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE 
                           28                           464 
  DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE 
                           28                           464 
[1] "DEL PEAK  4(1Q42.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE 
                           47                           445 
  DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE 
                           47                           445 
[1] "DEL PEAK  5(2P21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE 
                         46                         446 
  DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE 
                         46                         446 
[1] "DEL PEAK  6(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE 
                           92                           400 
  DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE 
                           92                           400 
[1] "DEL PEAK  7(2Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE 
                           85                           407 
  DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE 
                           85                           407 
[1] "DEL PEAK  8(3P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE 
                         78                         414 
  DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE 
                         78                         414 
[1] "DEL PEAK  9(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE 
                         32                         460 
  DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE 
                         32                         460 
[1] "DEL PEAK 10(4Q28.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE 
                           51                           441 
  DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE 
                           51                           441 
[1] "DEL PEAK 11(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                          105                           387 
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                          105                           387 
[1] "DEL PEAK 12(5Q13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE 
                           99                           393 
  DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE 
                           99                           393 
[1] "DEL PEAK 13(5Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE 
                          109                           383 
  DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE 
                          109                           383 
[1] "DEL PEAK 14(6P25.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE 
                           46                           446 
  DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE 
                           46                           446 
[1] "DEL PEAK 15(6Q14.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE 
                          180                           312 
  DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE 
                          180                           312 
[1] "DEL PEAK 16(8P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(8P21.3) MUTATED DEL PEAK 16(8P21.3) WILD-TYPE 
                          294                           198 
  DEL PEAK 16(8P21.3) MUTATED DEL PEAK 16(8P21.3) WILD-TYPE 
                          294                           198 
[1] "DEL PEAK 17(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                         45                         447 
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                         45                         447 
[1] "DEL PEAK 18(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                            157                             335 
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                            157                             335 
[1] "DEL PEAK 19(11P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE 
                            34                            458 
  DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE 
                            34                            458 
[1] "DEL PEAK 20(11Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(11Q22.3) MUTATED DEL PEAK 20(11Q22.3) WILD-TYPE 
                            43                            449 
  DEL PEAK 20(11Q22.3) MUTATED DEL PEAK 20(11Q22.3) WILD-TYPE 
                            43                            449 
[1] "DEL PEAK 21(11Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE 
                            48                            444 
  DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE 
                            48                            444 
[1] "DEL PEAK 22(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE 
                           124                            368 
  DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE 
                           124                            368 
[1] "DEL PEAK 23(12Q24.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(12Q24.32) MUTATED DEL PEAK 23(12Q24.32) WILD-TYPE 
                             43                             449 
  DEL PEAK 23(12Q24.32) MUTATED DEL PEAK 23(12Q24.32) WILD-TYPE 
                             43                             449 
[1] "DEL PEAK 24(13Q14.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(13Q14.13) MUTATED DEL PEAK 24(13Q14.13) WILD-TYPE 
                            227                             265 
  DEL PEAK 24(13Q14.13) MUTATED DEL PEAK 24(13Q14.13) WILD-TYPE 
                            227                             265 
[1] "DEL PEAK 25(13Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE 
                           176                            316 
  DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE 
                           176                            316 
[1] "DEL PEAK 26(15Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(15Q21.3) MUTATED DEL PEAK 26(15Q21.3) WILD-TYPE 
                            67                            425 
  DEL PEAK 26(15Q21.3) MUTATED DEL PEAK 26(15Q21.3) WILD-TYPE 
                            67                            425 
[1] "DEL PEAK 27(16Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(16Q22.3) MUTATED DEL PEAK 27(16Q22.3) WILD-TYPE 
                           191                            301 
  DEL PEAK 27(16Q22.3) MUTATED DEL PEAK 27(16Q22.3) WILD-TYPE 
                           191                            301 
[1] "DEL PEAK 28(16Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(16Q24.1) MUTATED DEL PEAK 28(16Q24.1) WILD-TYPE 
                           213                            279 
  DEL PEAK 28(16Q24.1) MUTATED DEL PEAK 28(16Q24.1) WILD-TYPE 
                           213                            279 
[1] "DEL PEAK 29(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE 
                           163                            329 
  DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE 
                           163                            329 
[1] "DEL PEAK 30(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(17Q21.31) MUTATED DEL PEAK 30(17Q21.31) WILD-TYPE 
                             96                             396 
  DEL PEAK 30(17Q21.31) MUTATED DEL PEAK 30(17Q21.31) WILD-TYPE 
                             96                             396 
[1] "DEL PEAK 31(18Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(18Q21.31) MUTATED DEL PEAK 31(18Q21.31) WILD-TYPE 
                            131                             361 
  DEL PEAK 31(18Q21.31) MUTATED DEL PEAK 31(18Q21.31) WILD-TYPE 
                            131                             361 
[1] "DEL PEAK 32(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE 
                         137                          355 
  DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE 
                         137                          355 
[1] "DEL PEAK 33(19Q13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(19Q13.2) MUTATED DEL PEAK 33(19Q13.2) WILD-TYPE 
                            52                            440 
  DEL PEAK 33(19Q13.2) MUTATED DEL PEAK 33(19Q13.2) WILD-TYPE 
                            52                            440 
[1] "DEL PEAK 34(21Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(21Q22.2) MUTATED DEL PEAK 34(21Q22.2) WILD-TYPE 
                            52                            440 
  DEL PEAK 34(21Q22.2) MUTATED DEL PEAK 34(21Q22.2) WILD-TYPE 
                            52                            440 
[1] "DEL PEAK 35(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(21Q22.3) MUTATED DEL PEAK 35(21Q22.3) WILD-TYPE 
                           146                            346 
  DEL PEAK 35(21Q22.3) MUTATED DEL PEAK 35(21Q22.3) WILD-TYPE 
                           146                            346 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 492 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 492 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        5      0      3     32
  AMP PEAK  1(1Q22) WILD-TYPE    103     91     95    163
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         5                         103
  CLUS_2                         0                          91
  CLUS_3                         3                          95
  CLUS_4                        32                         163
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        6     10     13     11
  AMP PEAK  1(1Q22) WILD-TYPE    155    127    111     59
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         6                         155
  CLUS_2                        10                         127
  CLUS_3                        13                         111
  CLUS_4                        11                          59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q22) MUTATED        5      1      3      4      9      9
  AMP PEAK  1(1Q22) WILD-TYPE    100     50     41     47     49     29
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         5                         100
  CLUS_2                         1                          50
  CLUS_3                         3                          41
  CLUS_4                         4                          47
  CLUS_5                         9                          49
  CLUS_6                         9                          29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        3      8      8     12
  AMP PEAK  1(1Q22) WILD-TYPE     71    105     84     56
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         3                          71
  CLUS_2                         8                         105
  CLUS_3                         8                          84
  CLUS_4                        12                          56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        3     13     19      5
  AMP PEAK  1(1Q22) WILD-TYPE     92    128    128    103
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         3                          92
  CLUS_2                        13                         128
  CLUS_3                        19                         128
  CLUS_4                         5                         103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED        3     25     12
  AMP PEAK  1(1Q22) WILD-TYPE    168    180    103
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         3                         168
  CLUS_2                        25                         180
  CLUS_3                        12                         103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       26      3      3      8
  AMP PEAK  1(1Q22) WILD-TYPE    182     68    120     78
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        26                         182
  CLUS_2                         3                          68
  CLUS_3                         3                         120
  CLUS_4                         8                          78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q22) MUTATED        5      7      5     22      1
  AMP PEAK  1(1Q22) WILD-TYPE    142     91     54    106     55
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         5                         142
  CLUS_2                         7                          91
  CLUS_3                         5                          54
  CLUS_4                        22                         106
  CLUS_5                         1                          55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        2     12      5      7
  AMP PEAK  1(1Q22) WILD-TYPE     63     79     73     77
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         2                          63
  CLUS_2                        12                          79
  CLUS_3                         5                          73
  CLUS_4                         7                          77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q22) MUTATED        2     15      4      1      4
  AMP PEAK  1(1Q22) WILD-TYPE     73     71     65     22     61
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         2                          73
  CLUS_2                        15                          71
  CLUS_3                         4                          65
  CLUS_4                         1                          22
  CLUS_5                         4                          61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(3Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(3Q21.3) MUTATED        6      1      5     63
  AMP PEAK  2(3Q21.3) WILD-TYPE    102     90     93    132
D2V1, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                           6                           102
  CLUS_2                           1                            90
  CLUS_3                           5                            93
  CLUS_4                          63                           132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(3Q21.3) MUTATED       12     25     16     22
  AMP PEAK  2(3Q21.3) WILD-TYPE    149    112    108     48
D2V2, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                          12                           149
  CLUS_2                          25                           112
  CLUS_3                          16                           108
  CLUS_4                          22                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(3Q21.3) MUTATED        8      8      6      7     13      9
  AMP PEAK  2(3Q21.3) WILD-TYPE     97     43     38     44     45     29
D2V3, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                           8                            97
  CLUS_2                           8                            43
  CLUS_3                           6                            38
  CLUS_4                           7                            44
  CLUS_5                          13                            45
  CLUS_6                           9                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(3Q21.3) MUTATED        5     22      8     16
  AMP PEAK  2(3Q21.3) WILD-TYPE     69     91     84     52
D2V4, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                           5                            69
  CLUS_2                          22                            91
  CLUS_3                           8                            84
  CLUS_4                          16                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(3Q21.3) MUTATED        7     19     41      8
  AMP PEAK  2(3Q21.3) WILD-TYPE     88    122    106    100
D2V5, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                           7                            88
  CLUS_2                          19                           122
  CLUS_3                          41                           106
  CLUS_4                           8                           100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(3Q21.3) MUTATED       11     45     19
  AMP PEAK  2(3Q21.3) WILD-TYPE    160    160     96
D2V6, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                          11                           160
  CLUS_2                          45                           160
  CLUS_3                          19                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(3Q21.3) MUTATED       41     11     11     11
  AMP PEAK  2(3Q21.3) WILD-TYPE    167     60    112     75
D2V7, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                          41                           167
  CLUS_2                          11                            60
  CLUS_3                          11                           112
  CLUS_4                          11                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(3Q21.3) MUTATED       12     15      6     35      6
  AMP PEAK  2(3Q21.3) WILD-TYPE    135     83     53     93     50
D2V8, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                          12                           135
  CLUS_2                          15                            83
  CLUS_3                           6                            53
  CLUS_4                          35                            93
  CLUS_5                           6                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(3Q21.3) MUTATED        2     20     12     12
  AMP PEAK  2(3Q21.3) WILD-TYPE     63     71     66     72
D2V9, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                           2                            63
  CLUS_2                          20                            71
  CLUS_3                          12                            66
  CLUS_4                          12                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(3Q21.3) MUTATED        5     22     11      1      7
  AMP PEAK  2(3Q21.3) WILD-TYPE     70     64     58     22     58
D2V10, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                           5                            70
  CLUS_2                          22                            64
  CLUS_3                          11                            58
  CLUS_4                           1                            22
  CLUS_5                           7                            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.2) MUTATED        8      3      8     67
  AMP PEAK  3(3Q26.2) WILD-TYPE    100     88     90    128
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           8                           100
  CLUS_2                           3                            88
  CLUS_3                           8                            90
  CLUS_4                          67                           128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.2) MUTATED       20     24     20     22
  AMP PEAK  3(3Q26.2) WILD-TYPE    141    113    104     48
D3V2, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          20                           141
  CLUS_2                          24                           113
  CLUS_3                          20                           104
  CLUS_4                          22                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.2) MUTATED       15      8      6      7     14     12
  AMP PEAK  3(3Q26.2) WILD-TYPE     90     43     38     44     44     26
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          15                            90
  CLUS_2                           8                            43
  CLUS_3                           6                            38
  CLUS_4                           7                            44
  CLUS_5                          14                            44
  CLUS_6                          12                            26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.2) MUTATED        8     24     13     17
  AMP PEAK  3(3Q26.2) WILD-TYPE     66     89     79     51
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           8                            66
  CLUS_2                          24                            89
  CLUS_3                          13                            79
  CLUS_4                          17                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.2) MUTATED        8     23     43     12
  AMP PEAK  3(3Q26.2) WILD-TYPE     87    118    104     96
D3V5, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           8                            87
  CLUS_2                          23                           118
  CLUS_3                          43                           104
  CLUS_4                          12                            96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       19     46     21
  AMP PEAK  3(3Q26.2) WILD-TYPE    152    159     94
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          19                           152
  CLUS_2                          46                           159
  CLUS_3                          21                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.2) MUTATED       47     13     13     12
  AMP PEAK  3(3Q26.2) WILD-TYPE    161     58    110     74
D3V7, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          47                           161
  CLUS_2                          13                            58
  CLUS_3                          13                           110
  CLUS_4                          12                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3Q26.2) MUTATED       17     16      8     36      8
  AMP PEAK  3(3Q26.2) WILD-TYPE    130     82     51     92     48
D3V8, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          17                           130
  CLUS_2                          16                            82
  CLUS_3                           8                            51
  CLUS_4                          36                            92
  CLUS_5                           8                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q26.2) MUTATED        5     22     16     10
  AMP PEAK  3(3Q26.2) WILD-TYPE     60     69     62     74
D3V9, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           5                            60
  CLUS_2                          22                            69
  CLUS_3                          16                            62
  CLUS_4                          10                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3Q26.2) MUTATED        4     26     14      4      5
  AMP PEAK  3(3Q26.2) WILD-TYPE     71     60     55     19     60
D3V10, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           4                            71
  CLUS_2                          26                            60
  CLUS_3                          14                            55
  CLUS_4                           4                            19
  CLUS_5                           5                            60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4P16.3) MUTATED        1      0      1     18
  AMP PEAK  4(4P16.3) WILD-TYPE    107     91     97    177
D4V1, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           1                           107
  CLUS_2                           0                            91
  CLUS_3                           1                            97
  CLUS_4                          18                           177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4P16.3) MUTATED        2      7      4      7
  AMP PEAK  4(4P16.3) WILD-TYPE    159    130    120     63
D4V2, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           2                           159
  CLUS_2                           7                           130
  CLUS_3                           4                           120
  CLUS_4                           7                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(4P16.3) MUTATED        4      1      1      2      2      4
  AMP PEAK  4(4P16.3) WILD-TYPE    101     50     43     49     56     34
D4V3, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           4                           101
  CLUS_2                           1                            50
  CLUS_3                           1                            43
  CLUS_4                           2                            49
  CLUS_5                           2                            56
  CLUS_6                           4                            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4P16.3) MUTATED        3      1      3      7
  AMP PEAK  4(4P16.3) WILD-TYPE     71    112     89     61
D4V4, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           3                            71
  CLUS_2                           1                           112
  CLUS_3                           3                            89
  CLUS_4                           7                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4P16.3) MUTATED        1      5     12      2
  AMP PEAK  4(4P16.3) WILD-TYPE     94    136    135    106
D4V5, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           1                            94
  CLUS_2                           5                           136
  CLUS_3                          12                           135
  CLUS_4                           2                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4P16.3) MUTATED        4     13      3
  AMP PEAK  4(4P16.3) WILD-TYPE    167    192    112
D4V6, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           4                           167
  CLUS_2                          13                           192
  CLUS_3                           3                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4P16.3) MUTATED        9      1      5      4
  AMP PEAK  4(4P16.3) WILD-TYPE    199     70    118     82
D4V7, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           9                           199
  CLUS_2                           1                            70
  CLUS_3                           5                           118
  CLUS_4                           4                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(4P16.3) MUTATED        4      2      1     11      1
  AMP PEAK  4(4P16.3) WILD-TYPE    143     96     58    117     55
D4V8, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           4                           143
  CLUS_2                           2                            96
  CLUS_3                           1                            58
  CLUS_4                          11                           117
  CLUS_5                           1                            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(4P16.3) MUTATED        2      4      2      5
  AMP PEAK  4(4P16.3) WILD-TYPE     63     87     76     79
D4V9, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           2                            63
  CLUS_2                           4                            87
  CLUS_3                           2                            76
  CLUS_4                           5                            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(4P16.3) MUTATED        1      5      3      1      3
  AMP PEAK  4(4P16.3) WILD-TYPE     74     81     66     22     62
D4V10, multiclass
        clus
vv       AMP PEAK  4(4P16.3) MUTATED AMP PEAK  4(4P16.3) WILD-TYPE
  CLUS_1                           1                            74
  CLUS_2                           5                            81
  CLUS_3                           3                            66
  CLUS_4                           1                            22
  CLUS_5                           3                            62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(4Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q13.3) MUTATED        2      0      1     19
  AMP PEAK  5(4Q13.3) WILD-TYPE    106     91     97    176
D5V1, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           2                           106
  CLUS_2                           0                            91
  CLUS_3                           1                            97
  CLUS_4                          19                           176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q13.3) MUTATED        7      5      3      7
  AMP PEAK  5(4Q13.3) WILD-TYPE    154    132    121     63
D5V2, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           7                           154
  CLUS_2                           5                           132
  CLUS_3                           3                           121
  CLUS_4                           7                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(4Q13.3) MUTATED        2      2      2      1      7      4
  AMP PEAK  5(4Q13.3) WILD-TYPE    103     49     42     50     51     34
D5V3, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           2                           103
  CLUS_2                           2                            49
  CLUS_3                           2                            42
  CLUS_4                           1                            50
  CLUS_5                           7                            51
  CLUS_6                           4                            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q13.3) MUTATED        1      8      2      7
  AMP PEAK  5(4Q13.3) WILD-TYPE     73    105     90     61
D5V4, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           1                            73
  CLUS_2                           8                           105
  CLUS_3                           2                            90
  CLUS_4                           7                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q13.3) MUTATED        0      6     12      4
  AMP PEAK  5(4Q13.3) WILD-TYPE     95    135    135    104
D5V5, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           0                            95
  CLUS_2                           6                           135
  CLUS_3                          12                           135
  CLUS_4                           4                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q13.3) MUTATED        5     13      4
  AMP PEAK  5(4Q13.3) WILD-TYPE    166    192    111
D5V6, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           5                           166
  CLUS_2                          13                           192
  CLUS_3                           4                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q13.3) MUTATED       16      2      3      0
  AMP PEAK  5(4Q13.3) WILD-TYPE    192     69    120     86
D5V7, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                          16                           192
  CLUS_2                           2                            69
  CLUS_3                           3                           120
  CLUS_4                           0                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(4Q13.3) MUTATED        3      5      3     10      0
  AMP PEAK  5(4Q13.3) WILD-TYPE    144     93     56    118     56
D5V8, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           3                           144
  CLUS_2                           5                            93
  CLUS_3                           3                            56
  CLUS_4                          10                           118
  CLUS_5                           0                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q13.3) MUTATED        1      5      5      0
  AMP PEAK  5(4Q13.3) WILD-TYPE     64     86     73     84
D5V9, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           1                            64
  CLUS_2                           5                            86
  CLUS_3                           5                            73
  CLUS_4                           0                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(4Q13.3) MUTATED        1      5      4      1      0
  AMP PEAK  5(4Q13.3) WILD-TYPE     74     81     65     22     65
D5V10, multiclass
        clus
vv       AMP PEAK  5(4Q13.3) MUTATED AMP PEAK  5(4Q13.3) WILD-TYPE
  CLUS_1                           1                            74
  CLUS_2                           5                            81
  CLUS_3                           4                            65
  CLUS_4                           1                            22
  CLUS_5                           0                            65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(5Q35.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5Q35.3) MUTATED        4      0      1     23
  AMP PEAK  6(5Q35.3) WILD-TYPE    104     91     97    172
D6V1, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           4                           104
  CLUS_2                           0                            91
  CLUS_3                           1                            97
  CLUS_4                          23                           172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5Q35.3) MUTATED        3      7      6     12
  AMP PEAK  6(5Q35.3) WILD-TYPE    158    130    118     58
D6V2, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           3                           158
  CLUS_2                           7                           130
  CLUS_3                           6                           118
  CLUS_4                          12                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5Q35.3) MUTATED        3      5      2      3      7      5
  AMP PEAK  6(5Q35.3) WILD-TYPE    102     46     42     48     51     33
D6V3, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           3                           102
  CLUS_2                           5                            46
  CLUS_3                           2                            42
  CLUS_4                           3                            48
  CLUS_5                           7                            51
  CLUS_6                           5                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5Q35.3) MUTATED        3      7      6      9
  AMP PEAK  6(5Q35.3) WILD-TYPE     71    106     86     59
D6V4, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           3                            71
  CLUS_2                           7                           106
  CLUS_3                           6                            86
  CLUS_4                           9                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5Q35.3) MUTATED        3      9     12      4
  AMP PEAK  6(5Q35.3) WILD-TYPE     92    132    135    104
D6V5, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           3                            92
  CLUS_2                           9                           132
  CLUS_3                          12                           135
  CLUS_4                           4                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5Q35.3) MUTATED        4     16      8
  AMP PEAK  6(5Q35.3) WILD-TYPE    167    189    107
D6V6, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           4                           167
  CLUS_2                          16                           189
  CLUS_3                           8                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5Q35.3) MUTATED       15      4      7      2
  AMP PEAK  6(5Q35.3) WILD-TYPE    193     67    116     84
D6V7, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                          15                           193
  CLUS_2                           4                            67
  CLUS_3                           7                           116
  CLUS_4                           2                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5Q35.3) MUTATED        6      6      0     16      0
  AMP PEAK  6(5Q35.3) WILD-TYPE    141     92     59    112     56
D6V8, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           6                           141
  CLUS_2                           6                            92
  CLUS_3                           0                            59
  CLUS_4                          16                           112
  CLUS_5                           0                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5Q35.3) MUTATED        0     11      6      2
  AMP PEAK  6(5Q35.3) WILD-TYPE     65     80     72     82
D6V9, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                          11                            80
  CLUS_3                           6                            72
  CLUS_4                           2                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5Q35.3) MUTATED        4     11      3      0      1
  AMP PEAK  6(5Q35.3) WILD-TYPE     71     75     66     23     64
D6V10, multiclass
        clus
vv       AMP PEAK  6(5Q35.3) MUTATED AMP PEAK  6(5Q35.3) WILD-TYPE
  CLUS_1                           4                            71
  CLUS_2                          11                            75
  CLUS_3                           3                            66
  CLUS_4                           0                            23
  CLUS_5                           1                            64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(7P14.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7P14.3) MUTATED        7      6     12     79
  AMP PEAK  7(7P14.3) WILD-TYPE    101     85     86    116
D7V1, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                           7                           101
  CLUS_2                           6                            85
  CLUS_3                          12                            86
  CLUS_4                          79                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7P14.3) MUTATED       13     47     20     24
  AMP PEAK  7(7P14.3) WILD-TYPE    148     90    104     46
D7V2, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                          13                           148
  CLUS_2                          47                            90
  CLUS_3                          20                           104
  CLUS_4                          24                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7P14.3) MUTATED       18     13     10      4     24      8
  AMP PEAK  7(7P14.3) WILD-TYPE     87     38     34     47     34     30
D7V3, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                          18                            87
  CLUS_2                          13                            38
  CLUS_3                          10                            34
  CLUS_4                           4                            47
  CLUS_5                          24                            34
  CLUS_6                           8                            30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7P14.3) MUTATED       12     25     20     20
  AMP PEAK  7(7P14.3) WILD-TYPE     62     88     72     48
D7V4, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                          12                            62
  CLUS_2                          25                            88
  CLUS_3                          20                            72
  CLUS_4                          20                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7P14.3) MUTATED       14     21     60      9
  AMP PEAK  7(7P14.3) WILD-TYPE     81    120     87     99
D7V5, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                          14                            81
  CLUS_2                          21                           120
  CLUS_3                          60                            87
  CLUS_4                           9                            99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7P14.3) MUTATED       22     64     18
  AMP PEAK  7(7P14.3) WILD-TYPE    149    141     97
D7V6, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                          22                           149
  CLUS_2                          64                           141
  CLUS_3                          18                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7P14.3) MUTATED       56     17     12     18
  AMP PEAK  7(7P14.3) WILD-TYPE    152     54    111     68
D7V7, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                          56                           152
  CLUS_2                          17                            54
  CLUS_3                          12                           111
  CLUS_4                          18                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(7P14.3) MUTATED       17     28     13     38      7
  AMP PEAK  7(7P14.3) WILD-TYPE    130     70     46     90     49
D7V8, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                          17                           130
  CLUS_2                          28                            70
  CLUS_3                          13                            46
  CLUS_4                          38                            90
  CLUS_5                           7                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7P14.3) MUTATED        5     27     19     19
  AMP PEAK  7(7P14.3) WILD-TYPE     60     64     59     65
D7V9, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                           5                            60
  CLUS_2                          27                            64
  CLUS_3                          19                            59
  CLUS_4                          19                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(7P14.3) MUTATED        9     29     18      2     12
  AMP PEAK  7(7P14.3) WILD-TYPE     66     57     51     21     53
D7V10, multiclass
        clus
vv       AMP PEAK  7(7P14.3) MUTATED AMP PEAK  7(7P14.3) WILD-TYPE
  CLUS_1                           9                            66
  CLUS_2                          29                            57
  CLUS_3                          18                            51
  CLUS_4                           2                            21
  CLUS_5                          12                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(7Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q22.1) MUTATED        7      6     11     77
  AMP PEAK  8(7Q22.1) WILD-TYPE    101     85     87    118
D8V1, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                           7                           101
  CLUS_2                           6                            85
  CLUS_3                          11                            87
  CLUS_4                          77                           118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q22.1) MUTATED       14     46     20     21
  AMP PEAK  8(7Q22.1) WILD-TYPE    147     91    104     49
D8V2, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                          14                           147
  CLUS_2                          46                            91
  CLUS_3                          20                           104
  CLUS_4                          21                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(7Q22.1) MUTATED       17     12      9      4     24      7
  AMP PEAK  8(7Q22.1) WILD-TYPE     88     39     35     47     34     31
D8V3, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                          17                            88
  CLUS_2                          12                            39
  CLUS_3                           9                            35
  CLUS_4                           4                            47
  CLUS_5                          24                            34
  CLUS_6                           7                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q22.1) MUTATED       12     24     17     20
  AMP PEAK  8(7Q22.1) WILD-TYPE     62     89     75     48
D8V4, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                          12                            62
  CLUS_2                          24                            89
  CLUS_3                          17                            75
  CLUS_4                          20                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q22.1) MUTATED       14     18     61      8
  AMP PEAK  8(7Q22.1) WILD-TYPE     81    123     86    100
D8V5, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                          14                            81
  CLUS_2                          18                           123
  CLUS_3                          61                            86
  CLUS_4                           8                           100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q22.1) MUTATED       22     64     15
  AMP PEAK  8(7Q22.1) WILD-TYPE    149    141    100
D8V6, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                          22                           149
  CLUS_2                          64                           141
  CLUS_3                          15                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q22.1) MUTATED       55     18     11     16
  AMP PEAK  8(7Q22.1) WILD-TYPE    153     53    112     70
D8V7, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                          55                           153
  CLUS_2                          18                            53
  CLUS_3                          11                           112
  CLUS_4                          16                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(7Q22.1) MUTATED       13     30     16     36      5
  AMP PEAK  8(7Q22.1) WILD-TYPE    134     68     43     92     51
D8V8, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                          13                           134
  CLUS_2                          30                            68
  CLUS_3                          16                            43
  CLUS_4                          36                            92
  CLUS_5                           5                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q22.1) MUTATED        4     27     21     17
  AMP PEAK  8(7Q22.1) WILD-TYPE     61     64     57     67
D8V9, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                           4                            61
  CLUS_2                          27                            64
  CLUS_3                          21                            57
  CLUS_4                          17                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(7Q22.1) MUTATED        9     29     20      1     10
  AMP PEAK  8(7Q22.1) WILD-TYPE     66     57     49     22     55
D8V10, multiclass
        clus
vv       AMP PEAK  8(7Q22.1) MUTATED AMP PEAK  8(7Q22.1) WILD-TYPE
  CLUS_1                           9                            66
  CLUS_2                          29                            57
  CLUS_3                          20                            49
  CLUS_4                           1                            22
  CLUS_5                          10                            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8P11.23) MUTATED        1      6      3     57
  AMP PEAK  9(8P11.23) WILD-TYPE    107     85     95    138
D9V1, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                            1                            107
  CLUS_2                            6                             85
  CLUS_3                            3                             95
  CLUS_4                           57                            138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8P11.23) MUTATED        7     29     10     21
  AMP PEAK  9(8P11.23) WILD-TYPE    154    108    114     49
D9V2, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                            7                            154
  CLUS_2                           29                            108
  CLUS_3                           10                            114
  CLUS_4                           21                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8P11.23) MUTATED        6      7      4      5     17     10
  AMP PEAK  9(8P11.23) WILD-TYPE     99     44     40     46     41     28
D9V3, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                            6                             99
  CLUS_2                            7                             44
  CLUS_3                            4                             40
  CLUS_4                            5                             46
  CLUS_5                           17                             41
  CLUS_6                           10                             28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8P11.23) MUTATED        9     15      7     18
  AMP PEAK  9(8P11.23) WILD-TYPE     65     98     85     50
D9V4, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                            9                             65
  CLUS_2                           15                             98
  CLUS_3                            7                             85
  CLUS_4                           18                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8P11.23) MUTATED        8     10     42      7
  AMP PEAK  9(8P11.23) WILD-TYPE     87    131    105    101
D9V5, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                            8                             87
  CLUS_2                           10                            131
  CLUS_3                           42                            105
  CLUS_4                            7                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.23) MUTATED       13     43     11
  AMP PEAK  9(8P11.23) WILD-TYPE    158    162    104
D9V6, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           13                            158
  CLUS_2                           43                            162
  CLUS_3                           11                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8P11.23) MUTATED       41      9      6     10
  AMP PEAK  9(8P11.23) WILD-TYPE    167     62    117     76
D9V7, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           41                            167
  CLUS_2                            9                             62
  CLUS_3                            6                            117
  CLUS_4                           10                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(8P11.23) MUTATED       10     12      6     31      7
  AMP PEAK  9(8P11.23) WILD-TYPE    137     86     53     97     49
D9V8, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           10                            137
  CLUS_2                           12                             86
  CLUS_3                            6                             53
  CLUS_4                           31                             97
  CLUS_5                            7                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8P11.23) MUTATED        2     25      8     10
  AMP PEAK  9(8P11.23) WILD-TYPE     63     66     70     74
D9V9, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                            2                             63
  CLUS_2                           25                             66
  CLUS_3                            8                             70
  CLUS_4                           10                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(8P11.23) MUTATED        5     25      8      1      6
  AMP PEAK  9(8P11.23) WILD-TYPE     70     61     61     22     59
D9V10, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                            5                             70
  CLUS_2                           25                             61
  CLUS_3                            8                             61
  CLUS_4                            1                             22
  CLUS_5                            6                             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(8Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q22.1) MUTATED       16      8      8    125
  AMP PEAK 10(8Q22.1) WILD-TYPE     92     83     90     70
D10V1, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          16                            92
  CLUS_2                           8                            83
  CLUS_3                           8                            90
  CLUS_4                         125                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q22.1) MUTATED       21     61     38     37
  AMP PEAK 10(8Q22.1) WILD-TYPE    140     76     86     33
D10V2, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          21                           140
  CLUS_2                          61                            76
  CLUS_3                          38                            86
  CLUS_4                          37                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8Q22.1) MUTATED       19     16     10     15     32     21
  AMP PEAK 10(8Q22.1) WILD-TYPE     86     35     34     36     26     17
D10V3, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          19                            86
  CLUS_2                          16                            35
  CLUS_3                          10                            34
  CLUS_4                          15                            36
  CLUS_5                          32                            26
  CLUS_6                          21                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q22.1) MUTATED       14     33     27     39
  AMP PEAK 10(8Q22.1) WILD-TYPE     60     80     65     29
D10V4, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          14                            60
  CLUS_2                          33                            80
  CLUS_3                          27                            65
  CLUS_4                          39                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q22.1) MUTATED       17     39     77     24
  AMP PEAK 10(8Q22.1) WILD-TYPE     78    102     70     84
D10V5, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          17                            78
  CLUS_2                          39                           102
  CLUS_3                          77                            70
  CLUS_4                          24                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q22.1) MUTATED       31     90     36
  AMP PEAK 10(8Q22.1) WILD-TYPE    140    115     79
D10V6, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          31                           140
  CLUS_2                          90                           115
  CLUS_3                          36                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q22.1) MUTATED       94     18     19     24
  AMP PEAK 10(8Q22.1) WILD-TYPE    114     53    104     62
D10V7, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          94                           114
  CLUS_2                          18                            53
  CLUS_3                          19                           104
  CLUS_4                          24                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8Q22.1) MUTATED       25     29     24     65     12
  AMP PEAK 10(8Q22.1) WILD-TYPE    122     69     35     63     44
D10V8, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          25                           122
  CLUS_2                          29                            69
  CLUS_3                          24                            35
  CLUS_4                          65                            63
  CLUS_5                          12                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q22.1) MUTATED        9     47     20     25
  AMP PEAK 10(8Q22.1) WILD-TYPE     56     44     58     59
D10V9, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                           9                            56
  CLUS_2                          47                            44
  CLUS_3                          20                            58
  CLUS_4                          25                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8Q22.1) MUTATED       16     47     18      5     15
  AMP PEAK 10(8Q22.1) WILD-TYPE     59     39     51     18     50
D10V10, multiclass
        clus
vv       AMP PEAK 10(8Q22.1) MUTATED AMP PEAK 10(8Q22.1) WILD-TYPE
  CLUS_1                          16                            59
  CLUS_2                          47                            39
  CLUS_3                          18                            51
  CLUS_4                           5                            18
  CLUS_5                          15                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q24.21) MUTATED       16      9      7    120
  AMP PEAK 11(8Q24.21) WILD-TYPE     92     82     91     75
D11V1, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           16                             92
  CLUS_2                            9                             82
  CLUS_3                            7                             91
  CLUS_4                          120                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q24.21) MUTATED       21     58     36     37
  AMP PEAK 11(8Q24.21) WILD-TYPE    140     79     88     33
D11V2, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           21                            140
  CLUS_2                           58                             79
  CLUS_3                           36                             88
  CLUS_4                           37                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8Q24.21) MUTATED       19     15      9     15     27     22
  AMP PEAK 11(8Q24.21) WILD-TYPE     86     36     35     36     31     16
D11V3, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           19                             86
  CLUS_2                           15                             36
  CLUS_3                            9                             35
  CLUS_4                           15                             36
  CLUS_5                           27                             31
  CLUS_6                           22                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q24.21) MUTATED       14     30     26     37
  AMP PEAK 11(8Q24.21) WILD-TYPE     60     83     66     31
D11V4, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           14                             60
  CLUS_2                           30                             83
  CLUS_3                           26                             66
  CLUS_4                           37                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q24.21) MUTATED       17     36     78     21
  AMP PEAK 11(8Q24.21) WILD-TYPE     78    105     69     87
D11V5, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           17                             78
  CLUS_2                           36                            105
  CLUS_3                           78                             69
  CLUS_4                           21                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED       29     90     33
  AMP PEAK 11(8Q24.21) WILD-TYPE    142    115     82
D11V6, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           29                            142
  CLUS_2                           90                            115
  CLUS_3                           33                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q24.21) MUTATED       91     19     17     23
  AMP PEAK 11(8Q24.21) WILD-TYPE    117     52    106     63
D11V7, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           91                            117
  CLUS_2                           19                             52
  CLUS_3                           17                            106
  CLUS_4                           23                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8Q24.21) MUTATED       21     29     23     65     12
  AMP PEAK 11(8Q24.21) WILD-TYPE    126     69     36     63     44
D11V8, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           21                            126
  CLUS_2                           29                             69
  CLUS_3                           23                             36
  CLUS_4                           65                             63
  CLUS_5                           12                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q24.21) MUTATED        9     45     20     24
  AMP PEAK 11(8Q24.21) WILD-TYPE     56     46     58     60
D11V9, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                            9                             56
  CLUS_2                           45                             46
  CLUS_3                           20                             58
  CLUS_4                           24                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8Q24.21) MUTATED       17     43     17      5     16
  AMP PEAK 11(8Q24.21) WILD-TYPE     58     43     52     18     49
D11V10, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           17                             58
  CLUS_2                           43                             43
  CLUS_3                           17                             52
  CLUS_4                            5                             18
  CLUS_5                           16                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(9Q33.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(9Q33.3) MUTATED        5      2      1     54
  AMP PEAK 12(9Q33.3) WILD-TYPE    103     89     97    141
D12V1, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                           5                           103
  CLUS_2                           2                            89
  CLUS_3                           1                            97
  CLUS_4                          54                           141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(9Q33.3) MUTATED       12      9     18     23
  AMP PEAK 12(9Q33.3) WILD-TYPE    149    128    106     47
D12V2, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                          12                           149
  CLUS_2                           9                           128
  CLUS_3                          18                           106
  CLUS_4                          23                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(9Q33.3) MUTATED        6      8      5      3     10     11
  AMP PEAK 12(9Q33.3) WILD-TYPE     99     43     39     48     48     27
D12V3, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                           6                            99
  CLUS_2                           8                            43
  CLUS_3                           5                            39
  CLUS_4                           3                            48
  CLUS_5                          10                            48
  CLUS_6                          11                            27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(9Q33.3) MUTATED        3     17     13     10
  AMP PEAK 12(9Q33.3) WILD-TYPE     71     96     79     58
D12V4, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                           3                            71
  CLUS_2                          17                            96
  CLUS_3                          13                            79
  CLUS_4                          10                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(9Q33.3) MUTATED        2     19     32      9
  AMP PEAK 12(9Q33.3) WILD-TYPE     93    122    115     99
D12V5, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                           2                            93
  CLUS_2                          19                           122
  CLUS_3                          32                           115
  CLUS_4                           9                            99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(9Q33.3) MUTATED       12     34     16
  AMP PEAK 12(9Q33.3) WILD-TYPE    159    171     99
D12V6, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                          12                           159
  CLUS_2                          34                           171
  CLUS_3                          16                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(9Q33.3) MUTATED       35      8     10      8
  AMP PEAK 12(9Q33.3) WILD-TYPE    173     63    113     78
D12V7, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                          35                           173
  CLUS_2                           8                            63
  CLUS_3                          10                           113
  CLUS_4                           8                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(9Q33.3) MUTATED       10     10      7     30      4
  AMP PEAK 12(9Q33.3) WILD-TYPE    137     88     52     98     52
D12V8, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                          10                           137
  CLUS_2                          10                            88
  CLUS_3                           7                            52
  CLUS_4                          30                            98
  CLUS_5                           4                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(9Q33.3) MUTATED        2     14      9      9
  AMP PEAK 12(9Q33.3) WILD-TYPE     63     77     69     75
D12V9, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                           2                            63
  CLUS_2                          14                            77
  CLUS_3                           9                            69
  CLUS_4                           9                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(9Q33.3) MUTATED        4     15      9      1      5
  AMP PEAK 12(9Q33.3) WILD-TYPE     71     71     60     22     60
D12V10, multiclass
        clus
vv       AMP PEAK 12(9Q33.3) MUTATED AMP PEAK 12(9Q33.3) WILD-TYPE
  CLUS_1                           4                            71
  CLUS_2                          15                            71
  CLUS_3                           9                            60
  CLUS_4                           1                            22
  CLUS_5                           5                            60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(11Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q13.2) MUTATED        4      0      2     42
  AMP PEAK 13(11Q13.2) WILD-TYPE    104     91     96    153
D13V1, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                            4                            104
  CLUS_2                            0                             91
  CLUS_3                            2                             96
  CLUS_4                           42                            153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q13.2) MUTATED        8     15      9     16
  AMP PEAK 13(11Q13.2) WILD-TYPE    153    122    115     54
D13V2, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                            8                            153
  CLUS_2                           15                            122
  CLUS_3                            9                            115
  CLUS_4                           16                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(11Q13.2) MUTATED        6      6      2      3     13      4
  AMP PEAK 13(11Q13.2) WILD-TYPE     99     45     42     48     45     34
D13V3, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                            6                             99
  CLUS_2                            6                             45
  CLUS_3                            2                             42
  CLUS_4                            3                             48
  CLUS_5                           13                             45
  CLUS_6                            4                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q13.2) MUTATED        5     11      6     12
  AMP PEAK 13(11Q13.2) WILD-TYPE     69    102     86     56
D13V4, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                            5                             69
  CLUS_2                           11                            102
  CLUS_3                            6                             86
  CLUS_4                           12                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q13.2) MUTATED        4      9     27      8
  AMP PEAK 13(11Q13.2) WILD-TYPE     91    132    120    100
D13V5, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                            4                             91
  CLUS_2                            9                            132
  CLUS_3                           27                            120
  CLUS_4                            8                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q13.2) MUTATED        8     33      7
  AMP PEAK 13(11Q13.2) WILD-TYPE    163    172    108
D13V6, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                            8                            163
  CLUS_2                           33                            172
  CLUS_3                            7                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q13.2) MUTATED       29      8      5      5
  AMP PEAK 13(11Q13.2) WILD-TYPE    179     63    118     81
D13V7, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                           29                            179
  CLUS_2                            8                             63
  CLUS_3                            5                            118
  CLUS_4                            5                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(11Q13.2) MUTATED        6     11      5     24      1
  AMP PEAK 13(11Q13.2) WILD-TYPE    141     87     54    104     55
D13V8, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                            6                            141
  CLUS_2                           11                             87
  CLUS_3                            5                             54
  CLUS_4                           24                            104
  CLUS_5                            1                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q13.2) MUTATED        1     13     11      4
  AMP PEAK 13(11Q13.2) WILD-TYPE     64     78     67     80
D13V9, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                           13                             78
  CLUS_3                           11                             67
  CLUS_4                            4                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(11Q13.2) MUTATED        4     11     10      0      4
  AMP PEAK 13(11Q13.2) WILD-TYPE     71     75     59     23     61
D13V10, multiclass
        clus
vv       AMP PEAK 13(11Q13.2) MUTATED AMP PEAK 13(11Q13.2) WILD-TYPE
  CLUS_1                            4                             71
  CLUS_2                           11                             75
  CLUS_3                           10                             59
  CLUS_4                            0                             23
  CLUS_5                            4                             61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q23.1) MUTATED        4      2      4     26
  AMP PEAK 14(12Q23.1) WILD-TYPE    104     89     94    169
D14V1, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                            4                            104
  CLUS_2                            2                             89
  CLUS_3                            4                             94
  CLUS_4                           26                            169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q23.1) MUTATED        7     10      3     16
  AMP PEAK 14(12Q23.1) WILD-TYPE    154    127    121     54
D14V2, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                            7                            154
  CLUS_2                           10                            127
  CLUS_3                            3                            121
  CLUS_4                           16                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(12Q23.1) MUTATED        2      8      2      6      9      4
  AMP PEAK 14(12Q23.1) WILD-TYPE    103     43     42     45     49     34
D14V3, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                            2                            103
  CLUS_2                            8                             43
  CLUS_3                            2                             42
  CLUS_4                            6                             45
  CLUS_5                            9                             49
  CLUS_6                            4                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q23.1) MUTATED        3     10      5     13
  AMP PEAK 14(12Q23.1) WILD-TYPE     71    103     87     55
D14V4, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                            3                             71
  CLUS_2                           10                            103
  CLUS_3                            5                             87
  CLUS_4                           13                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q23.1) MUTATED        2      7     21      6
  AMP PEAK 14(12Q23.1) WILD-TYPE     93    134    126    102
D14V5, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                            2                             93
  CLUS_2                            7                            134
  CLUS_3                           21                            126
  CLUS_4                            6                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q23.1) MUTATED        8     24      4
  AMP PEAK 14(12Q23.1) WILD-TYPE    163    181    111
D14V6, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                            8                            163
  CLUS_2                           24                            181
  CLUS_3                            4                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q23.1) MUTATED       23      6      5      1
  AMP PEAK 14(12Q23.1) WILD-TYPE    185     65    118     85
D14V7, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                           23                            185
  CLUS_2                            6                             65
  CLUS_3                            5                            118
  CLUS_4                            1                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(12Q23.1) MUTATED        7      5      2     21      0
  AMP PEAK 14(12Q23.1) WILD-TYPE    140     93     57    107     56
D14V8, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                            7                            140
  CLUS_2                            5                             93
  CLUS_3                            2                             57
  CLUS_4                           21                            107
  CLUS_5                            0                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q23.1) MUTATED        3     11      8      1
  AMP PEAK 14(12Q23.1) WILD-TYPE     62     80     70     83
D14V9, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                            3                             62
  CLUS_2                           11                             80
  CLUS_3                            8                             70
  CLUS_4                            1                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(12Q23.1) MUTATED        4     12      4      2      1
  AMP PEAK 14(12Q23.1) WILD-TYPE     71     74     65     21     64
D14V10, multiclass
        clus
vv       AMP PEAK 14(12Q23.1) MUTATED AMP PEAK 14(12Q23.1) WILD-TYPE
  CLUS_1                            4                             71
  CLUS_2                           12                             74
  CLUS_3                            4                             65
  CLUS_4                            2                             21
  CLUS_5                            1                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q12.11) MUTATED        1      0      2     22
  AMP PEAK 15(13Q12.11) WILD-TYPE    107     91     96    173
D15V1, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             1                             107
  CLUS_2                             0                              91
  CLUS_3                             2                              96
  CLUS_4                            22                             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q12.11) MUTATED        2      5      9      9
  AMP PEAK 15(13Q12.11) WILD-TYPE    159    132    115     61
D15V2, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             2                             159
  CLUS_2                             5                             132
  CLUS_3                             9                             115
  CLUS_4                             9                              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(13Q12.11) MUTATED        2      2      0      3      5      7
  AMP PEAK 15(13Q12.11) WILD-TYPE    103     49     44     48     53     31
D15V3, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             2                             103
  CLUS_2                             2                              49
  CLUS_3                             0                              44
  CLUS_4                             3                              48
  CLUS_5                             5                              53
  CLUS_6                             7                              31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q12.11) MUTATED        3      3      2     11
  AMP PEAK 15(13Q12.11) WILD-TYPE     71    110     90     57
D15V4, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             3                              71
  CLUS_2                             3                             110
  CLUS_3                             2                              90
  CLUS_4                            11                              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q12.11) MUTATED        1      6     16      2
  AMP PEAK 15(13Q12.11) WILD-TYPE     94    135    131    106
D15V5, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             1                              94
  CLUS_2                             6                             135
  CLUS_3                            16                             131
  CLUS_4                             2                             106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q12.11) MUTATED        4     14      7
  AMP PEAK 15(13Q12.11) WILD-TYPE    167    191    108
D15V6, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             4                             167
  CLUS_2                            14                             191
  CLUS_3                             7                             108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q12.11) MUTATED       15      2      3      4
  AMP PEAK 15(13Q12.11) WILD-TYPE    193     69    120     82
D15V7, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                            15                             193
  CLUS_2                             2                              69
  CLUS_3                             3                             120
  CLUS_4                             4                              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(13Q12.11) MUTATED        2      4      5     11      2
  AMP PEAK 15(13Q12.11) WILD-TYPE    145     94     54    117     54
D15V8, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             2                             145
  CLUS_2                             4                              94
  CLUS_3                             5                              54
  CLUS_4                            11                             117
  CLUS_5                             2                              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q12.11) MUTATED        1      9      2      3
  AMP PEAK 15(13Q12.11) WILD-TYPE     64     82     76     81
D15V9, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             1                              64
  CLUS_2                             9                              82
  CLUS_3                             2                              76
  CLUS_4                             3                              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(13Q12.11) MUTATED        2      8      2      0      3
  AMP PEAK 15(13Q12.11) WILD-TYPE     73     78     67     23     62
D15V10, multiclass
        clus
vv       AMP PEAK 15(13Q12.11) MUTATED AMP PEAK 15(13Q12.11) WILD-TYPE
  CLUS_1                             2                              73
  CLUS_2                             8                              78
  CLUS_3                             2                              67
  CLUS_4                             0                              23
  CLUS_5                             3                              62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(14Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(14Q21.1) MUTATED        1      0      3     26
  AMP PEAK 16(14Q21.1) WILD-TYPE    107     91     95    169
D16V1, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            1                            107
  CLUS_2                            0                             91
  CLUS_3                            3                             95
  CLUS_4                           26                            169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(14Q21.1) MUTATED        5      9      7      9
  AMP PEAK 16(14Q21.1) WILD-TYPE    156    128    117     61
D16V2, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            5                            156
  CLUS_2                            9                            128
  CLUS_3                            7                            117
  CLUS_4                            9                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(14Q21.1) MUTATED        5      4      0      2      3      4
  AMP PEAK 16(14Q21.1) WILD-TYPE    100     47     44     49     55     34
D16V3, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            5                            100
  CLUS_2                            4                             47
  CLUS_3                            0                             44
  CLUS_4                            2                             49
  CLUS_5                            3                             55
  CLUS_6                            4                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(14Q21.1) MUTATED        3      5      5      5
  AMP PEAK 16(14Q21.1) WILD-TYPE     71    108     87     63
D16V4, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            3                             71
  CLUS_2                            5                            108
  CLUS_3                            5                             87
  CLUS_4                            5                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(14Q21.1) MUTATED        1      4     21      4
  AMP PEAK 16(14Q21.1) WILD-TYPE     94    137    126    104
D16V5, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            1                             94
  CLUS_2                            4                            137
  CLUS_3                           21                            126
  CLUS_4                            4                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(14Q21.1) MUTATED        5     19      6
  AMP PEAK 16(14Q21.1) WILD-TYPE    166    186    109
D16V6, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            5                            166
  CLUS_2                           19                            186
  CLUS_3                            6                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(14Q21.1) MUTATED       17      5      3      5
  AMP PEAK 16(14Q21.1) WILD-TYPE    191     66    120     81
D16V7, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                           17                            191
  CLUS_2                            5                             66
  CLUS_3                            3                            120
  CLUS_4                            5                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(14Q21.1) MUTATED        3      5      3     16      3
  AMP PEAK 16(14Q21.1) WILD-TYPE    144     93     56    112     53
D16V8, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            3                            144
  CLUS_2                            5                             93
  CLUS_3                            3                             56
  CLUS_4                           16                            112
  CLUS_5                            3                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(14Q21.1) MUTATED        0     11      5      7
  AMP PEAK 16(14Q21.1) WILD-TYPE     65     80     73     77
D16V9, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            0                             65
  CLUS_2                           11                             80
  CLUS_3                            5                             73
  CLUS_4                            7                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(14Q21.1) MUTATED        2     13      5      0      3
  AMP PEAK 16(14Q21.1) WILD-TYPE     73     73     64     23     62
D16V10, multiclass
        clus
vv       AMP PEAK 16(14Q21.1) MUTATED AMP PEAK 16(14Q21.1) WILD-TYPE
  CLUS_1                            2                             73
  CLUS_2                           13                             73
  CLUS_3                            5                             64
  CLUS_4                            0                             23
  CLUS_5                            3                             62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q11.2) MUTATED        1      0      2     13
  AMP PEAK 17(15Q11.2) WILD-TYPE    107     91     96    182
D17V1, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            1                            107
  CLUS_2                            0                             91
  CLUS_3                            2                             96
  CLUS_4                           13                            182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q11.2) MUTATED        3      3      3      7
  AMP PEAK 17(15Q11.2) WILD-TYPE    158    134    121     63
D17V2, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            3                            158
  CLUS_2                            3                            134
  CLUS_3                            3                            121
  CLUS_4                            7                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(15Q11.2) MUTATED        1      2      0      0      3      3
  AMP PEAK 17(15Q11.2) WILD-TYPE    104     49     44     51     55     35
D17V3, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            1                            104
  CLUS_2                            2                             49
  CLUS_3                            0                             44
  CLUS_4                            0                             51
  CLUS_5                            3                             55
  CLUS_6                            3                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q11.2) MUTATED        1      1      4      3
  AMP PEAK 17(15Q11.2) WILD-TYPE     73    112     88     65
D17V4, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            1                             73
  CLUS_2                            1                            112
  CLUS_3                            4                             88
  CLUS_4                            3                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q11.2) MUTATED        0      4      9      3
  AMP PEAK 17(15Q11.2) WILD-TYPE     95    137    138    105
D17V5, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            0                             95
  CLUS_2                            4                            137
  CLUS_3                            9                            138
  CLUS_4                            3                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q11.2) MUTATED        4      9      3
  AMP PEAK 17(15Q11.2) WILD-TYPE    167    196    112
D17V6, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            4                            167
  CLUS_2                            9                            196
  CLUS_3                            3                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q11.2) MUTATED        8      2      2      4
  AMP PEAK 17(15Q11.2) WILD-TYPE    200     69    121     82
D17V7, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            8                            200
  CLUS_2                            2                             69
  CLUS_3                            2                            121
  CLUS_4                            4                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(15Q11.2) MUTATED        4      2      2      7      1
  AMP PEAK 17(15Q11.2) WILD-TYPE    143     96     57    121     55
D17V8, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            4                            143
  CLUS_2                            2                             96
  CLUS_3                            2                             57
  CLUS_4                            7                            121
  CLUS_5                            1                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q11.2) MUTATED        0      3      3      3
  AMP PEAK 17(15Q11.2) WILD-TYPE     65     88     75     81
D17V9, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            0                             65
  CLUS_2                            3                             88
  CLUS_3                            3                             75
  CLUS_4                            3                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(15Q11.2) MUTATED        1      4      2      0      2
  AMP PEAK 17(15Q11.2) WILD-TYPE     74     82     67     23     63
D17V10, multiclass
        clus
vv       AMP PEAK 17(15Q11.2) MUTATED AMP PEAK 17(15Q11.2) WILD-TYPE
  CLUS_1                            1                             74
  CLUS_2                            4                             82
  CLUS_3                            2                             67
  CLUS_4                            0                             23
  CLUS_5                            2                             63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(16Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16Q11.2) MUTATED        4      1      2     23
  AMP PEAK 18(16Q11.2) WILD-TYPE    104     90     96    172
D18V1, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            4                            104
  CLUS_2                            1                             90
  CLUS_3                            2                             96
  CLUS_4                           23                            172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16Q11.2) MUTATED        3      6      6     15
  AMP PEAK 18(16Q11.2) WILD-TYPE    158    131    118     55
D18V2, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            3                            158
  CLUS_2                            6                            131
  CLUS_3                            6                            118
  CLUS_4                           15                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(16Q11.2) MUTATED        2      4      3      3      7      3
  AMP PEAK 18(16Q11.2) WILD-TYPE    103     47     41     48     51     35
D18V3, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            2                            103
  CLUS_2                            4                             47
  CLUS_3                            3                             41
  CLUS_4                            3                             48
  CLUS_5                            7                             51
  CLUS_6                            3                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16Q11.2) MUTATED        3      9      4      6
  AMP PEAK 18(16Q11.2) WILD-TYPE     71    104     88     62
D18V4, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            3                             71
  CLUS_2                            9                            104
  CLUS_3                            4                             88
  CLUS_4                            6                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16Q11.2) MUTATED        4      8     14      4
  AMP PEAK 18(16Q11.2) WILD-TYPE     91    133    133    104
D18V5, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            4                             91
  CLUS_2                            8                            133
  CLUS_3                           14                            133
  CLUS_4                            4                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16Q11.2) MUTATED        5     18      7
  AMP PEAK 18(16Q11.2) WILD-TYPE    166    187    108
D18V6, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            5                            166
  CLUS_2                           18                            187
  CLUS_3                            7                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16Q11.2) MUTATED       16      3      3      7
  AMP PEAK 18(16Q11.2) WILD-TYPE    192     68    120     79
D18V7, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                           16                            192
  CLUS_2                            3                             68
  CLUS_3                            3                            120
  CLUS_4                            7                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(16Q11.2) MUTATED        1      5      4     15      4
  AMP PEAK 18(16Q11.2) WILD-TYPE    146     93     55    113     52
D18V8, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            1                            146
  CLUS_2                            5                             93
  CLUS_3                            4                             55
  CLUS_4                           15                            113
  CLUS_5                            4                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16Q11.2) MUTATED        1      6      5      7
  AMP PEAK 18(16Q11.2) WILD-TYPE     64     85     73     77
D18V9, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            6                             85
  CLUS_3                            5                             73
  CLUS_4                            7                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(16Q11.2) MUTATED        3      6      3      1      6
  AMP PEAK 18(16Q11.2) WILD-TYPE     72     80     66     22     59
D18V10, multiclass
        clus
vv       AMP PEAK 18(16Q11.2) MUTATED AMP PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            3                             72
  CLUS_2                            6                             80
  CLUS_3                            3                             66
  CLUS_4                            1                             22
  CLUS_5                            6                             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17P11.2) MUTATED        2      1      0     19
  AMP PEAK 19(17P11.2) WILD-TYPE    106     90     98    176
D19V1, multiclass
        clus
vv       AMP PEAK 19(17P11.2) MUTATED AMP PEAK 19(17P11.2) WILD-TYPE
  CLUS_1                            2                            106
  CLUS_2                            1                             90
  CLUS_3                            0                             98
  CLUS_4                           19                            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17P11.2) MUTATED        6      3      7      6
  AMP PEAK 19(17P11.2) WILD-TYPE    155    134    117     64
D19V2, multiclass
        clus
vv       AMP PEAK 19(17P11.2) MUTATED AMP PEAK 19(17P11.2) WILD-TYPE
  CLUS_1                            6                            155
  CLUS_2                            3                            134
  CLUS_3                            7                            117
  CLUS_4                            6                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17P11.2) MUTATED        4      2      1      1      2      5
  AMP PEAK 19(17P11.2) WILD-TYPE    101     49     43     50     56     33
D19V3, multiclass
        clus
vv       AMP PEAK 19(17P11.2) MUTATED AMP PEAK 19(17P11.2) WILD-TYPE
  CLUS_1                            4                            101
  CLUS_2                            2                             49
  CLUS_3                            1                             43
  CLUS_4                            1                             50
  CLUS_5                            2                             56
  CLUS_6                            5                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17P11.2) MUTATED        2      2      3      8
  AMP PEAK 19(17P11.2) WILD-TYPE     72    111     89     60
D19V4, multiclass
        clus
vv       AMP PEAK 19(17P11.2) MUTATED AMP PEAK 19(17P11.2) WILD-TYPE
  CLUS_1                            2                             72
  CLUS_2                            2                            111
  CLUS_3                            3                             89
  CLUS_4                            8                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17P11.2) MUTATED        2      8     10      2
  AMP PEAK 19(17P11.2) WILD-TYPE     93    133    137    106
D19V5, multiclass
        clus
vv       AMP PEAK 19(17P11.2) MUTATED AMP PEAK 19(17P11.2) WILD-TYPE
  CLUS_1                            2                             93
  CLUS_2                            8                            133
  CLUS_3                           10                            137
  CLUS_4                            2                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17P11.2) MUTATED        5     10      7
  AMP PEAK 19(17P11.2) WILD-TYPE    166    195    108
D19V6, multiclass
        clus
vv       AMP PEAK 19(17P11.2) MUTATED AMP PEAK 19(17P11.2) WILD-TYPE
  CLUS_1                            5                            166
  CLUS_2                           10                            195
  CLUS_3                            7                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17P11.2) MUTATED       13      2      2      4
  AMP PEAK 19(17P11.2) WILD-TYPE    195     69    121     82
D19V7, multiclass
        clus
vv       AMP PEAK 19(17P11.2) MUTATED AMP PEAK 19(17P11.2) WILD-TYPE
  CLUS_1                           13                            195
  CLUS_2                            2                             69
  CLUS_3                            2                            121
  CLUS_4                            4                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17P11.2) MUTATED        3      4      7      5      2
  AMP PEAK 19(17P11.2) WILD-TYPE    144     94     52    123     54
D19V8, multiclass
        clus
vv       AMP PEAK 19(17P11.2) MUTATED AMP PEAK 19(17P11.2) WILD-TYPE
  CLUS_1                            3                            144
  CLUS_2                            4                             94
  CLUS_3                            7                             52
  CLUS_4                            5                            123
  CLUS_5                            2                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17P11.2) MUTATED        2      5      2      4
  AMP PEAK 19(17P11.2) WILD-TYPE     63     86     76     80
D19V9, multiclass
        clus
vv       AMP PEAK 19(17P11.2) MUTATED AMP PEAK 19(17P11.2) WILD-TYPE
  CLUS_1                            2                             63
  CLUS_2                            5                             86
  CLUS_3                            2                             76
  CLUS_4                            4                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17P11.2) MUTATED        0      8      1      1      3
  AMP PEAK 19(17P11.2) WILD-TYPE     75     78     68     22     62
D19V10, multiclass
        clus
vv       AMP PEAK 19(17P11.2) MUTATED AMP PEAK 19(17P11.2) WILD-TYPE
  CLUS_1                            0                             75
  CLUS_2                            8                             78
  CLUS_3                            1                             68
  CLUS_4                            1                             22
  CLUS_5                            3                             62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(17Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q23.2) MUTATED        3      1      1     20
  AMP PEAK 20(17Q23.2) WILD-TYPE    105     90     97    175
D20V1, multiclass
        clus
vv       AMP PEAK 20(17Q23.2) MUTATED AMP PEAK 20(17Q23.2) WILD-TYPE
  CLUS_1                            3                            105
  CLUS_2                            1                             90
  CLUS_3                            1                             97
  CLUS_4                           20                            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q23.2) MUTATED        6      4      4     11
  AMP PEAK 20(17Q23.2) WILD-TYPE    155    133    120     59
D20V2, multiclass
        clus
vv       AMP PEAK 20(17Q23.2) MUTATED AMP PEAK 20(17Q23.2) WILD-TYPE
  CLUS_1                            6                            155
  CLUS_2                            4                            133
  CLUS_3                            4                            120
  CLUS_4                           11                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(17Q23.2) MUTATED        4      2      3      0      4      5
  AMP PEAK 20(17Q23.2) WILD-TYPE    101     49     41     51     54     33
D20V3, multiclass
        clus
vv       AMP PEAK 20(17Q23.2) MUTATED AMP PEAK 20(17Q23.2) WILD-TYPE
  CLUS_1                            4                            101
  CLUS_2                            2                             49
  CLUS_3                            3                             41
  CLUS_4                            0                             51
  CLUS_5                            4                             54
  CLUS_6                            5                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q23.2) MUTATED        4      6      2      6
  AMP PEAK 20(17Q23.2) WILD-TYPE     70    107     90     62
D20V4, multiclass
        clus
vv       AMP PEAK 20(17Q23.2) MUTATED AMP PEAK 20(17Q23.2) WILD-TYPE
  CLUS_1                            4                             70
  CLUS_2                            6                            107
  CLUS_3                            2                             90
  CLUS_4                            6                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q23.2) MUTATED        2      8     12      3
  AMP PEAK 20(17Q23.2) WILD-TYPE     93    133    135    105
D20V5, multiclass
        clus
vv       AMP PEAK 20(17Q23.2) MUTATED AMP PEAK 20(17Q23.2) WILD-TYPE
  CLUS_1                            2                             93
  CLUS_2                            8                            133
  CLUS_3                           12                            135
  CLUS_4                            3                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q23.2) MUTATED        5     12      8
  AMP PEAK 20(17Q23.2) WILD-TYPE    166    193    107
D20V6, multiclass
        clus
vv       AMP PEAK 20(17Q23.2) MUTATED AMP PEAK 20(17Q23.2) WILD-TYPE
  CLUS_1                            5                            166
  CLUS_2                           12                            193
  CLUS_3                            8                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q23.2) MUTATED       15      2      3      5
  AMP PEAK 20(17Q23.2) WILD-TYPE    193     69    120     81
D20V7, multiclass
        clus
vv       AMP PEAK 20(17Q23.2) MUTATED AMP PEAK 20(17Q23.2) WILD-TYPE
  CLUS_1                           15                            193
  CLUS_2                            2                             69
  CLUS_3                            3                            120
  CLUS_4                            5                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(17Q23.2) MUTATED        4      4      7     10      0
  AMP PEAK 20(17Q23.2) WILD-TYPE    143     94     52    118     56
D20V8, multiclass
        clus
vv       AMP PEAK 20(17Q23.2) MUTATED AMP PEAK 20(17Q23.2) WILD-TYPE
  CLUS_1                            4                            143
  CLUS_2                            4                             94
  CLUS_3                            7                             52
  CLUS_4                           10                            118
  CLUS_5                            0                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q23.2) MUTATED        1      5      6      4
  AMP PEAK 20(17Q23.2) WILD-TYPE     64     86     72     80
D20V9, multiclass
        clus
vv       AMP PEAK 20(17Q23.2) MUTATED AMP PEAK 20(17Q23.2) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            5                             86
  CLUS_3                            6                             72
  CLUS_4                            4                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(17Q23.2) MUTATED        3      7      4      1      1
  AMP PEAK 20(17Q23.2) WILD-TYPE     72     79     65     22     64
D20V10, multiclass
        clus
vv       AMP PEAK 20(17Q23.2) MUTATED AMP PEAK 20(17Q23.2) WILD-TYPE
  CLUS_1                            3                             72
  CLUS_2                            7                             79
  CLUS_3                            4                             65
  CLUS_4                            1                             22
  CLUS_5                            1                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(18Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(18Q21.31) MUTATED        0      0      1     12
  AMP PEAK 21(18Q21.31) WILD-TYPE    108     91     97    183
D21V1, multiclass
        clus
vv       AMP PEAK 21(18Q21.31) MUTATED AMP PEAK 21(18Q21.31) WILD-TYPE
  CLUS_1                             0                             108
  CLUS_2                             0                              91
  CLUS_3                             1                              97
  CLUS_4                            12                             183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(18Q21.31) MUTATED        1      3      5      4
  AMP PEAK 21(18Q21.31) WILD-TYPE    160    134    119     66
D21V2, multiclass
        clus
vv       AMP PEAK 21(18Q21.31) MUTATED AMP PEAK 21(18Q21.31) WILD-TYPE
  CLUS_1                             1                             160
  CLUS_2                             3                             134
  CLUS_3                             5                             119
  CLUS_4                             4                              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(18Q21.31) MUTATED        3      2      3      0      2      2
  AMP PEAK 21(18Q21.31) WILD-TYPE    102     49     41     51     56     36
D21V3, multiclass
        clus
vv       AMP PEAK 21(18Q21.31) MUTATED AMP PEAK 21(18Q21.31) WILD-TYPE
  CLUS_1                             3                             102
  CLUS_2                             2                              49
  CLUS_3                             3                              41
  CLUS_4                             0                              51
  CLUS_5                             2                              56
  CLUS_6                             2                              36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(18Q21.31) MUTATED        2      5      2      3
  AMP PEAK 21(18Q21.31) WILD-TYPE     72    108     90     65
D21V4, multiclass
        clus
vv       AMP PEAK 21(18Q21.31) MUTATED AMP PEAK 21(18Q21.31) WILD-TYPE
  CLUS_1                             2                              72
  CLUS_2                             5                             108
  CLUS_3                             2                              90
  CLUS_4                             3                              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(18Q21.31) MUTATED        0      4      7      2
  AMP PEAK 21(18Q21.31) WILD-TYPE     95    137    140    106
D21V5, multiclass
        clus
vv       AMP PEAK 21(18Q21.31) MUTATED AMP PEAK 21(18Q21.31) WILD-TYPE
  CLUS_1                             0                              95
  CLUS_2                             4                             137
  CLUS_3                             7                             140
  CLUS_4                             2                             106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(18Q21.31) MUTATED        2      8      3
  AMP PEAK 21(18Q21.31) WILD-TYPE    169    197    112
D21V6, multiclass
        clus
vv       AMP PEAK 21(18Q21.31) MUTATED AMP PEAK 21(18Q21.31) WILD-TYPE
  CLUS_1                             2                             169
  CLUS_2                             8                             197
  CLUS_3                             3                             112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(18Q21.31) MUTATED        6      2      3      2
  AMP PEAK 21(18Q21.31) WILD-TYPE    202     69    120     84
D21V7, multiclass
        clus
vv       AMP PEAK 21(18Q21.31) MUTATED AMP PEAK 21(18Q21.31) WILD-TYPE
  CLUS_1                             6                             202
  CLUS_2                             2                              69
  CLUS_3                             3                             120
  CLUS_4                             2                              84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(18Q21.31) MUTATED        2      5      0      4      2
  AMP PEAK 21(18Q21.31) WILD-TYPE    145     93     59    124     54
D21V8, multiclass
        clus
vv       AMP PEAK 21(18Q21.31) MUTATED AMP PEAK 21(18Q21.31) WILD-TYPE
  CLUS_1                             2                             145
  CLUS_2                             5                              93
  CLUS_3                             0                              59
  CLUS_4                             4                             124
  CLUS_5                             2                              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(18Q21.31) MUTATED        1      3      2      3
  AMP PEAK 21(18Q21.31) WILD-TYPE     64     88     76     81
D21V9, multiclass
        clus
vv       AMP PEAK 21(18Q21.31) MUTATED AMP PEAK 21(18Q21.31) WILD-TYPE
  CLUS_1                             1                              64
  CLUS_2                             3                              88
  CLUS_3                             2                              76
  CLUS_4                             3                              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(18Q21.31) MUTATED        2      2      2      1      2
  AMP PEAK 21(18Q21.31) WILD-TYPE     73     84     67     22     63
D21V10, multiclass
        clus
vv       AMP PEAK 21(18Q21.31) MUTATED AMP PEAK 21(18Q21.31) WILD-TYPE
  CLUS_1                             2                              73
  CLUS_2                             2                              84
  CLUS_3                             2                              67
  CLUS_4                             1                              22
  CLUS_5                             2                              63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19Q13.43) MUTATED        0      0      0     19
  AMP PEAK 22(19Q13.43) WILD-TYPE    108     91     98    176
D22V1, multiclass
        clus
vv       AMP PEAK 22(19Q13.43) MUTATED AMP PEAK 22(19Q13.43) WILD-TYPE
  CLUS_1                             0                             108
  CLUS_2                             0                              91
  CLUS_3                             0                              98
  CLUS_4                            19                             176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19Q13.43) MUTATED        2      7      5      5
  AMP PEAK 22(19Q13.43) WILD-TYPE    159    130    119     65
D22V2, multiclass
        clus
vv       AMP PEAK 22(19Q13.43) MUTATED AMP PEAK 22(19Q13.43) WILD-TYPE
  CLUS_1                             2                             159
  CLUS_2                             7                             130
  CLUS_3                             5                             119
  CLUS_4                             5                              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(19Q13.43) MUTATED        1      2      2      0      4      3
  AMP PEAK 22(19Q13.43) WILD-TYPE    104     49     42     51     54     35
D22V3, multiclass
        clus
vv       AMP PEAK 22(19Q13.43) MUTATED AMP PEAK 22(19Q13.43) WILD-TYPE
  CLUS_1                             1                             104
  CLUS_2                             2                              49
  CLUS_3                             2                              42
  CLUS_4                             0                              51
  CLUS_5                             4                              54
  CLUS_6                             3                              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19Q13.43) MUTATED        2      6      0      4
  AMP PEAK 22(19Q13.43) WILD-TYPE     72    107     92     64
D22V4, multiclass
        clus
vv       AMP PEAK 22(19Q13.43) MUTATED AMP PEAK 22(19Q13.43) WILD-TYPE
  CLUS_1                             2                              72
  CLUS_2                             6                             107
  CLUS_3                             0                              92
  CLUS_4                             4                              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19Q13.43) MUTATED        4      4     10      1
  AMP PEAK 22(19Q13.43) WILD-TYPE     91    137    137    107
D22V5, multiclass
        clus
vv       AMP PEAK 22(19Q13.43) MUTATED AMP PEAK 22(19Q13.43) WILD-TYPE
  CLUS_1                             4                              91
  CLUS_2                             4                             137
  CLUS_3                            10                             137
  CLUS_4                             1                             107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19Q13.43) MUTATED        2     13      4
  AMP PEAK 22(19Q13.43) WILD-TYPE    169    192    111
D22V6, multiclass
        clus
vv       AMP PEAK 22(19Q13.43) MUTATED AMP PEAK 22(19Q13.43) WILD-TYPE
  CLUS_1                             2                             169
  CLUS_2                            13                             192
  CLUS_3                             4                             111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19Q13.43) MUTATED       10      4      0      5
  AMP PEAK 22(19Q13.43) WILD-TYPE    198     67    123     81
D22V7, multiclass
        clus
vv       AMP PEAK 22(19Q13.43) MUTATED AMP PEAK 22(19Q13.43) WILD-TYPE
  CLUS_1                            10                             198
  CLUS_2                             4                              67
  CLUS_3                             0                             123
  CLUS_4                             5                              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(19Q13.43) MUTATED        0      5      1     11      2
  AMP PEAK 22(19Q13.43) WILD-TYPE    147     93     58    117     54
D22V8, multiclass
        clus
vv       AMP PEAK 22(19Q13.43) MUTATED AMP PEAK 22(19Q13.43) WILD-TYPE
  CLUS_1                             0                             147
  CLUS_2                             5                              93
  CLUS_3                             1                              58
  CLUS_4                            11                             117
  CLUS_5                             2                              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19Q13.43) MUTATED        0      6      2      4
  AMP PEAK 22(19Q13.43) WILD-TYPE     65     85     76     80
D22V9, multiclass
        clus
vv       AMP PEAK 22(19Q13.43) MUTATED AMP PEAK 22(19Q13.43) WILD-TYPE
  CLUS_1                             0                              65
  CLUS_2                             6                              85
  CLUS_3                             2                              76
  CLUS_4                             4                              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(19Q13.43) MUTATED        0      7      3      0      2
  AMP PEAK 22(19Q13.43) WILD-TYPE     75     79     66     23     63
D22V10, multiclass
        clus
vv       AMP PEAK 22(19Q13.43) MUTATED AMP PEAK 22(19Q13.43) WILD-TYPE
  CLUS_1                             0                              75
  CLUS_2                             7                              79
  CLUS_3                             3                              66
  CLUS_4                             0                              23
  CLUS_5                             2                              63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(20Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q13.2) MUTATED        1      1      3     40
  AMP PEAK 23(20Q13.2) WILD-TYPE    107     90     95    155
D23V1, multiclass
        clus
vv       AMP PEAK 23(20Q13.2) MUTATED AMP PEAK 23(20Q13.2) WILD-TYPE
  CLUS_1                            1                            107
  CLUS_2                            1                             90
  CLUS_3                            3                             95
  CLUS_4                           40                            155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q13.2) MUTATED        5     19      7     14
  AMP PEAK 23(20Q13.2) WILD-TYPE    156    118    117     56
D23V2, multiclass
        clus
vv       AMP PEAK 23(20Q13.2) MUTATED AMP PEAK 23(20Q13.2) WILD-TYPE
  CLUS_1                            5                            156
  CLUS_2                           19                            118
  CLUS_3                            7                            117
  CLUS_4                           14                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(20Q13.2) MUTATED        7      2      5      1     13      3
  AMP PEAK 23(20Q13.2) WILD-TYPE     98     49     39     50     45     35
D23V3, multiclass
        clus
vv       AMP PEAK 23(20Q13.2) MUTATED AMP PEAK 23(20Q13.2) WILD-TYPE
  CLUS_1                            7                             98
  CLUS_2                            2                             49
  CLUS_3                            5                             39
  CLUS_4                            1                             50
  CLUS_5                           13                             45
  CLUS_6                            3                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q13.2) MUTATED        4     11      4     12
  AMP PEAK 23(20Q13.2) WILD-TYPE     70    102     88     56
D23V4, multiclass
        clus
vv       AMP PEAK 23(20Q13.2) MUTATED AMP PEAK 23(20Q13.2) WILD-TYPE
  CLUS_1                            4                             70
  CLUS_2                           11                            102
  CLUS_3                            4                             88
  CLUS_4                           12                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q13.2) MUTATED        4      9     27      5
  AMP PEAK 23(20Q13.2) WILD-TYPE     91    132    120    103
D23V5, multiclass
        clus
vv       AMP PEAK 23(20Q13.2) MUTATED AMP PEAK 23(20Q13.2) WILD-TYPE
  CLUS_1                            4                             91
  CLUS_2                            9                            132
  CLUS_3                           27                            120
  CLUS_4                            5                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q13.2) MUTATED        7     30      8
  AMP PEAK 23(20Q13.2) WILD-TYPE    164    175    107
D23V6, multiclass
        clus
vv       AMP PEAK 23(20Q13.2) MUTATED AMP PEAK 23(20Q13.2) WILD-TYPE
  CLUS_1                            7                            164
  CLUS_2                           30                            175
  CLUS_3                            8                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q13.2) MUTATED       27      5      5      8
  AMP PEAK 23(20Q13.2) WILD-TYPE    181     66    118     78
D23V7, multiclass
        clus
vv       AMP PEAK 23(20Q13.2) MUTATED AMP PEAK 23(20Q13.2) WILD-TYPE
  CLUS_1                           27                            181
  CLUS_2                            5                             66
  CLUS_3                            5                            118
  CLUS_4                            8                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(20Q13.2) MUTATED        5     13      1     23      3
  AMP PEAK 23(20Q13.2) WILD-TYPE    142     85     58    105     53
D23V8, multiclass
        clus
vv       AMP PEAK 23(20Q13.2) MUTATED AMP PEAK 23(20Q13.2) WILD-TYPE
  CLUS_1                            5                            142
  CLUS_2                           13                             85
  CLUS_3                            1                             58
  CLUS_4                           23                            105
  CLUS_5                            3                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q13.2) MUTATED        1     10      9      7
  AMP PEAK 23(20Q13.2) WILD-TYPE     64     81     69     77
D23V9, multiclass
        clus
vv       AMP PEAK 23(20Q13.2) MUTATED AMP PEAK 23(20Q13.2) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                           10                             81
  CLUS_3                            9                             69
  CLUS_4                            7                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(20Q13.2) MUTATED        3     12      7      1      4
  AMP PEAK 23(20Q13.2) WILD-TYPE     72     74     62     22     61
D23V10, multiclass
        clus
vv       AMP PEAK 23(20Q13.2) MUTATED AMP PEAK 23(20Q13.2) WILD-TYPE
  CLUS_1                            3                             72
  CLUS_2                           12                             74
  CLUS_3                            7                             62
  CLUS_4                            1                             22
  CLUS_5                            4                             61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP22.2) MUTATED        4      0      0     23
  AMP PEAK 24(XP22.2) WILD-TYPE    104     91     98    172
D24V1, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           4                           104
  CLUS_2                           0                            91
  CLUS_3                           0                            98
  CLUS_4                          23                           172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP22.2) MUTATED        3      6      4     14
  AMP PEAK 24(XP22.2) WILD-TYPE    158    131    120     56
D24V2, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           3                           158
  CLUS_2                           6                           131
  CLUS_3                           4                           120
  CLUS_4                          14                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(XP22.2) MUTATED        1      3      2      1      5      3
  AMP PEAK 24(XP22.2) WILD-TYPE    104     48     42     50     53     35
D24V3, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           1                           104
  CLUS_2                           3                            48
  CLUS_3                           2                            42
  CLUS_4                           1                            50
  CLUS_5                           5                            53
  CLUS_6                           3                            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP22.2) MUTATED        1      7      1      6
  AMP PEAK 24(XP22.2) WILD-TYPE     73    106     91     62
D24V4, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           1                            73
  CLUS_2                           7                           106
  CLUS_3                           1                            91
  CLUS_4                           6                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP22.2) MUTATED        0      5     18      4
  AMP PEAK 24(XP22.2) WILD-TYPE     95    136    129    104
D24V5, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           0                            95
  CLUS_2                           5                           136
  CLUS_3                          18                           129
  CLUS_4                           4                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP22.2) MUTATED        4     17      6
  AMP PEAK 24(XP22.2) WILD-TYPE    167    188    109
D24V6, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           4                           167
  CLUS_2                          17                           188
  CLUS_3                           6                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP22.2) MUTATED       18      3      3      3
  AMP PEAK 24(XP22.2) WILD-TYPE    190     68    120     83
D24V7, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                          18                           190
  CLUS_2                           3                            68
  CLUS_3                           3                           120
  CLUS_4                           3                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(XP22.2) MUTATED        2      7      2     14      2
  AMP PEAK 24(XP22.2) WILD-TYPE    145     91     57    114     54
D24V8, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           2                           145
  CLUS_2                           7                            91
  CLUS_3                           2                            57
  CLUS_4                          14                           114
  CLUS_5                           2                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP22.2) MUTATED        0      6      4      6
  AMP PEAK 24(XP22.2) WILD-TYPE     65     85     74     78
D24V9, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           6                            85
  CLUS_3                           4                            74
  CLUS_4                           6                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(XP22.2) MUTATED        2      8      3      0      3
  AMP PEAK 24(XP22.2) WILD-TYPE     73     78     66     23     62
D24V10, multiclass
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  CLUS_1                           2                            73
  CLUS_2                           8                            78
  CLUS_3                           3                            66
  CLUS_4                           0                            23
  CLUS_5                           3                            62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(XQ12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XQ12) MUTATED        0      0      0     16
  AMP PEAK 25(XQ12) WILD-TYPE    108     91     98    179
D25V1, multiclass
        clus
vv       AMP PEAK 25(XQ12) MUTATED AMP PEAK 25(XQ12) WILD-TYPE
  CLUS_1                         0                         108
  CLUS_2                         0                          91
  CLUS_3                         0                          98
  CLUS_4                        16                         179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XQ12) MUTATED        0      5      2      9
  AMP PEAK 25(XQ12) WILD-TYPE    161    132    122     61
D25V2, multiclass
        clus
vv       AMP PEAK 25(XQ12) MUTATED AMP PEAK 25(XQ12) WILD-TYPE
  CLUS_1                         0                         161
  CLUS_2                         5                         132
  CLUS_3                         2                         122
  CLUS_4                         9                          61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(XQ12) MUTATED        1      2      0      0      5      3
  AMP PEAK 25(XQ12) WILD-TYPE    104     49     44     51     53     35
D25V3, multiclass
        clus
vv       AMP PEAK 25(XQ12) MUTATED AMP PEAK 25(XQ12) WILD-TYPE
  CLUS_1                         1                         104
  CLUS_2                         2                          49
  CLUS_3                         0                          44
  CLUS_4                         0                          51
  CLUS_5                         5                          53
  CLUS_6                         3                          35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XQ12) MUTATED        1      5      0      5
  AMP PEAK 25(XQ12) WILD-TYPE     73    108     92     63
D25V4, multiclass
        clus
vv       AMP PEAK 25(XQ12) MUTATED AMP PEAK 25(XQ12) WILD-TYPE
  CLUS_1                         1                          73
  CLUS_2                         5                         108
  CLUS_3                         0                          92
  CLUS_4                         5                          63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XQ12) MUTATED        0      3     13      0
  AMP PEAK 25(XQ12) WILD-TYPE     95    138    134    108
D25V5, multiclass
        clus
vv       AMP PEAK 25(XQ12) MUTATED AMP PEAK 25(XQ12) WILD-TYPE
  CLUS_1                         0                          95
  CLUS_2                         3                         138
  CLUS_3                        13                         134
  CLUS_4                         0                         108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ12) MUTATED        0     14      2
  AMP PEAK 25(XQ12) WILD-TYPE    171    191    113
D25V6, multiclass
        clus
vv       AMP PEAK 25(XQ12) MUTATED AMP PEAK 25(XQ12) WILD-TYPE
  CLUS_1                         0                         171
  CLUS_2                        14                         191
  CLUS_3                         2                         113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XQ12) MUTATED       11      2      0      3
  AMP PEAK 25(XQ12) WILD-TYPE    197     69    123     83
D25V7, multiclass
        clus
vv       AMP PEAK 25(XQ12) MUTATED AMP PEAK 25(XQ12) WILD-TYPE
  CLUS_1                        11                         197
  CLUS_2                         2                          69
  CLUS_3                         0                         123
  CLUS_4                         3                          83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(XQ12) MUTATED        0      5      0     10      1
  AMP PEAK 25(XQ12) WILD-TYPE    147     93     59    118     55
D25V8, multiclass
        clus
vv       AMP PEAK 25(XQ12) MUTATED AMP PEAK 25(XQ12) WILD-TYPE
  CLUS_1                         0                         147
  CLUS_2                         5                          93
  CLUS_3                         0                          59
  CLUS_4                        10                         118
  CLUS_5                         1                          55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XQ12) MUTATED        0      3      2      2
  AMP PEAK 25(XQ12) WILD-TYPE     65     88     76     82
D25V9, multiclass
        clus
vv       AMP PEAK 25(XQ12) MUTATED AMP PEAK 25(XQ12) WILD-TYPE
  CLUS_1                         0                          65
  CLUS_2                         3                          88
  CLUS_3                         2                          76
  CLUS_4                         2                          82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(XQ12) MUTATED        1      4      2      0      0
  AMP PEAK 25(XQ12) WILD-TYPE     74     82     67     23     65
D25V10, multiclass
        clus
vv       AMP PEAK 25(XQ12) MUTATED AMP PEAK 25(XQ12) WILD-TYPE
  CLUS_1                         1                          74
  CLUS_2                         4                          82
  CLUS_3                         2                          67
  CLUS_4                         0                          23
  CLUS_5                         0                          65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(XQ21.1) MUTATED        0      0      2     12
  AMP PEAK 26(XQ21.1) WILD-TYPE    108     91     96    183
D26V1, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           0                           108
  CLUS_2                           0                            91
  CLUS_3                           2                            96
  CLUS_4                          12                           183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(XQ21.1) MUTATED        1      7      2      4
  AMP PEAK 26(XQ21.1) WILD-TYPE    160    130    122     66
D26V2, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           1                           160
  CLUS_2                           7                           130
  CLUS_3                           2                           122
  CLUS_4                           4                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(XQ21.1) MUTATED        1      1      0      2      4      3
  AMP PEAK 26(XQ21.1) WILD-TYPE    104     50     44     49     54     35
D26V3, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           1                           104
  CLUS_2                           1                            50
  CLUS_3                           0                            44
  CLUS_4                           2                            49
  CLUS_5                           4                            54
  CLUS_6                           3                            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(XQ21.1) MUTATED        1      4      0      6
  AMP PEAK 26(XQ21.1) WILD-TYPE     73    109     92     62
D26V4, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           1                            73
  CLUS_2                           4                           109
  CLUS_3                           0                            92
  CLUS_4                           6                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(XQ21.1) MUTATED        0      3      9      2
  AMP PEAK 26(XQ21.1) WILD-TYPE     95    138    138    106
D26V5, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           0                            95
  CLUS_2                           3                           138
  CLUS_3                           9                           138
  CLUS_4                           2                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ21.1) MUTATED        1     12      1
  AMP PEAK 26(XQ21.1) WILD-TYPE    170    193    114
D26V6, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           1                           170
  CLUS_2                          12                           193
  CLUS_3                           1                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(XQ21.1) MUTATED        8      2      1      3
  AMP PEAK 26(XQ21.1) WILD-TYPE    200     69    122     83
D26V7, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           8                           200
  CLUS_2                           2                            69
  CLUS_3                           1                           122
  CLUS_4                           3                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(XQ21.1) MUTATED        2      5      0      5      2
  AMP PEAK 26(XQ21.1) WILD-TYPE    145     93     59    123     54
D26V8, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           2                           145
  CLUS_2                           5                            93
  CLUS_3                           0                            59
  CLUS_4                           5                           123
  CLUS_5                           2                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(XQ21.1) MUTATED        0      2      1      3
  AMP PEAK 26(XQ21.1) WILD-TYPE     65     89     77     81
D26V9, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           2                            89
  CLUS_3                           1                            77
  CLUS_4                           3                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(XQ21.1) MUTATED        1      3      1      0      1
  AMP PEAK 26(XQ21.1) WILD-TYPE     74     83     68     23     64
D26V10, multiclass
        clus
vv       AMP PEAK 26(XQ21.1) MUTATED AMP PEAK 26(XQ21.1) WILD-TYPE
  CLUS_1                           1                            74
  CLUS_2                           3                            83
  CLUS_3                           1                            68
  CLUS_4                           0                            23
  CLUS_5                           1                            64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(XQ21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(XQ21.31) MUTATED        0      0      1     12
  AMP PEAK 27(XQ21.31) WILD-TYPE    108     91     97    183
D27V1, multiclass
        clus
vv       AMP PEAK 27(XQ21.31) MUTATED AMP PEAK 27(XQ21.31) WILD-TYPE
  CLUS_1                            0                            108
  CLUS_2                            0                             91
  CLUS_3                            1                             97
  CLUS_4                           12                            183
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(XQ21.31) MUTATED        0      4      5      4
  AMP PEAK 27(XQ21.31) WILD-TYPE    161    133    119     66
D27V2, multiclass
        clus
vv       AMP PEAK 27(XQ21.31) MUTATED AMP PEAK 27(XQ21.31) WILD-TYPE
  CLUS_1                            0                            161
  CLUS_2                            4                            133
  CLUS_3                            5                            119
  CLUS_4                            4                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(XQ21.31) MUTATED        1      1      1      2      3      3
  AMP PEAK 27(XQ21.31) WILD-TYPE    104     50     43     49     55     35
D27V3, multiclass
        clus
vv       AMP PEAK 27(XQ21.31) MUTATED AMP PEAK 27(XQ21.31) WILD-TYPE
  CLUS_1                            1                            104
  CLUS_2                            1                             50
  CLUS_3                            1                             43
  CLUS_4                            2                             49
  CLUS_5                            3                             55
  CLUS_6                            3                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(XQ21.31) MUTATED        1      5      0      5
  AMP PEAK 27(XQ21.31) WILD-TYPE     73    108     92     63
D27V4, multiclass
        clus
vv       AMP PEAK 27(XQ21.31) MUTATED AMP PEAK 27(XQ21.31) WILD-TYPE
  CLUS_1                            1                             73
  CLUS_2                            5                            108
  CLUS_3                            0                             92
  CLUS_4                            5                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(XQ21.31) MUTATED        1      4      8      0
  AMP PEAK 27(XQ21.31) WILD-TYPE     94    137    139    108
D27V5, multiclass
        clus
vv       AMP PEAK 27(XQ21.31) MUTATED AMP PEAK 27(XQ21.31) WILD-TYPE
  CLUS_1                            1                             94
  CLUS_2                            4                            137
  CLUS_3                            8                            139
  CLUS_4                            0                            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ21.31) MUTATED        0     10      3
  AMP PEAK 27(XQ21.31) WILD-TYPE    171    195    112
D27V6, multiclass
        clus
vv       AMP PEAK 27(XQ21.31) MUTATED AMP PEAK 27(XQ21.31) WILD-TYPE
  CLUS_1                            0                            171
  CLUS_2                           10                            195
  CLUS_3                            3                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(XQ21.31) MUTATED        7      3      1      2
  AMP PEAK 27(XQ21.31) WILD-TYPE    201     68    122     84
D27V7, multiclass
        clus
vv       AMP PEAK 27(XQ21.31) MUTATED AMP PEAK 27(XQ21.31) WILD-TYPE
  CLUS_1                            7                            201
  CLUS_2                            3                             68
  CLUS_3                            1                            122
  CLUS_4                            2                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(XQ21.31) MUTATED        1      5      1      5      1
  AMP PEAK 27(XQ21.31) WILD-TYPE    146     93     58    123     55
D27V8, multiclass
        clus
vv       AMP PEAK 27(XQ21.31) MUTATED AMP PEAK 27(XQ21.31) WILD-TYPE
  CLUS_1                            1                            146
  CLUS_2                            5                             93
  CLUS_3                            1                             58
  CLUS_4                            5                            123
  CLUS_5                            1                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(XQ21.31) MUTATED        1      3      2      1
  AMP PEAK 27(XQ21.31) WILD-TYPE     64     88     76     83
D27V9, multiclass
        clus
vv       AMP PEAK 27(XQ21.31) MUTATED AMP PEAK 27(XQ21.31) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            3                             88
  CLUS_3                            2                             76
  CLUS_4                            1                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(XQ21.31) MUTATED        1      4      2      0      0
  AMP PEAK 27(XQ21.31) WILD-TYPE     74     82     67     23     65
D27V10, multiclass
        clus
vv       AMP PEAK 27(XQ21.31) MUTATED AMP PEAK 27(XQ21.31) WILD-TYPE
  CLUS_1                            1                             74
  CLUS_2                            4                             82
  CLUS_3                            2                             67
  CLUS_4                            0                             23
  CLUS_5                            0                             65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(XQ25) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(XQ25) MUTATED        1      0      3     15
  AMP PEAK 28(XQ25) WILD-TYPE    107     91     95    180
D28V1, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         1                         107
  CLUS_2                         0                          91
  CLUS_3                         3                          95
  CLUS_4                        15                         180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(XQ25) MUTATED        3      7      2      7
  AMP PEAK 28(XQ25) WILD-TYPE    158    130    122     63
D28V2, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         3                         158
  CLUS_2                         7                         130
  CLUS_3                         2                         122
  CLUS_4                         7                          63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(XQ25) MUTATED        2      1      0      1      7      3
  AMP PEAK 28(XQ25) WILD-TYPE    103     50     44     50     51     35
D28V3, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         2                         103
  CLUS_2                         1                          50
  CLUS_3                         0                          44
  CLUS_4                         1                          50
  CLUS_5                         7                          51
  CLUS_6                         3                          35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(XQ25) MUTATED        2      4      2      6
  AMP PEAK 28(XQ25) WILD-TYPE     72    109     90     62
D28V4, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         2                          72
  CLUS_2                         4                         109
  CLUS_3                         2                          90
  CLUS_4                         6                          62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(XQ25) MUTATED        2      5     11      1
  AMP PEAK 28(XQ25) WILD-TYPE     93    136    136    107
D28V5, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         2                          93
  CLUS_2                         5                         136
  CLUS_3                        11                         136
  CLUS_4                         1                         107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ25) MUTATED        3     14      2
  AMP PEAK 28(XQ25) WILD-TYPE    168    191    113
D28V6, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         3                         168
  CLUS_2                        14                         191
  CLUS_3                         2                         113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(XQ25) MUTATED       12      3      2      2
  AMP PEAK 28(XQ25) WILD-TYPE    196     68    121     84
D28V7, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                        12                         196
  CLUS_2                         3                          68
  CLUS_3                         2                         121
  CLUS_4                         2                          84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(XQ25) MUTATED        4      6      0      8      1
  AMP PEAK 28(XQ25) WILD-TYPE    143     92     59    120     55
D28V8, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         4                         143
  CLUS_2                         6                          92
  CLUS_3                         0                          59
  CLUS_4                         8                         120
  CLUS_5                         1                          55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(XQ25) MUTATED        2      2      2      4
  AMP PEAK 28(XQ25) WILD-TYPE     63     89     76     80
D28V9, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         2                          63
  CLUS_2                         2                          89
  CLUS_3                         2                          76
  CLUS_4                         4                          80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(XQ25) MUTATED        1      5      2      2      0
  AMP PEAK 28(XQ25) WILD-TYPE     74     81     67     21     65
D28V10, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         1                          74
  CLUS_2                         5                          81
  CLUS_3                         2                          67
  CLUS_4                         2                          21
  CLUS_5                         0                          65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  1(1P31.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P31.3) MUTATED        5      0     13     42
  DEL PEAK  1(1P31.3) WILD-TYPE    103     91     85    153
D29V1, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           5                           103
  CLUS_2                           0                            91
  CLUS_3                          13                            85
  CLUS_4                          42                           153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P31.3) MUTATED        3     15     29     13
  DEL PEAK  1(1P31.3) WILD-TYPE    158    122     95     57
D29V2, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           3                           158
  CLUS_2                          15                           122
  CLUS_3                          29                            95
  CLUS_4                          13                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P31.3) MUTATED       11      9      7      3      5      7
  DEL PEAK  1(1P31.3) WILD-TYPE     94     42     37     48     53     31
D29V3, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          11                            94
  CLUS_2                           9                            42
  CLUS_3                           7                            37
  CLUS_4                           3                            48
  CLUS_5                           5                            53
  CLUS_6                           7                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P31.3) MUTATED        8     16     10      8
  DEL PEAK  1(1P31.3) WILD-TYPE     66     97     82     60
D29V4, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           8                            66
  CLUS_2                          16                            97
  CLUS_3                          10                            82
  CLUS_4                           8                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P31.3) MUTATED        4     32     20      4
  DEL PEAK  1(1P31.3) WILD-TYPE     91    109    127    104
D29V5, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           4                            91
  CLUS_2                          32                           109
  CLUS_3                          20                           127
  CLUS_4                           4                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P31.3) MUTATED        5     26     29
  DEL PEAK  1(1P31.3) WILD-TYPE    166    179     86
D29V6, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           5                           166
  CLUS_2                          26                           179
  CLUS_3                          29                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P31.3) MUTATED       33      7      4     15
  DEL PEAK  1(1P31.3) WILD-TYPE    175     64    119     71
D29V7, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          33                           175
  CLUS_2                           7                            64
  CLUS_3                           4                           119
  CLUS_4                          15                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P31.3) MUTATED       11     11      8     22      7
  DEL PEAK  1(1P31.3) WILD-TYPE    136     87     51    106     49
D29V8, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          11                           136
  CLUS_2                          11                            87
  CLUS_3                           8                            51
  CLUS_4                          22                           106
  CLUS_5                           7                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P31.3) MUTATED        2     21     11     12
  DEL PEAK  1(1P31.3) WILD-TYPE     63     70     67     72
D29V9, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           2                            63
  CLUS_2                          21                            70
  CLUS_3                          11                            67
  CLUS_4                          12                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P31.3) MUTATED        4     20     12      2      8
  DEL PEAK  1(1P31.3) WILD-TYPE     71     66     57     21     57
D29V10, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           4                            71
  CLUS_2                          20                            66
  CLUS_3                          12                            57
  CLUS_4                           2                            21
  CLUS_5                           8                            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  2(1P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED        4      0     11     43
  DEL PEAK  2(1P22.1) WILD-TYPE    104     91     87    152
D30V1, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           4                           104
  CLUS_2                           0                            91
  CLUS_3                          11                            87
  CLUS_4                          43                           152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED        4     23     20     11
  DEL PEAK  2(1P22.1) WILD-TYPE    157    114    104     59
D30V2, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           4                           157
  CLUS_2                          23                           114
  CLUS_3                          20                           104
  CLUS_4                          11                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P22.1) MUTATED        8      9      4      2      7      5
  DEL PEAK  2(1P22.1) WILD-TYPE     97     42     40     49     51     33
D30V3, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           8                            97
  CLUS_2                           9                            42
  CLUS_3                           4                            40
  CLUS_4                           2                            49
  CLUS_5                           7                            51
  CLUS_6                           5                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED        5     10     10     10
  DEL PEAK  2(1P22.1) WILD-TYPE     69    103     82     58
D30V4, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           5                            69
  CLUS_2                          10                           103
  CLUS_3                          10                            82
  CLUS_4                          10                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED        2     23     27      6
  DEL PEAK  2(1P22.1) WILD-TYPE     93    118    120    102
D30V5, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           2                            93
  CLUS_2                          23                           118
  CLUS_3                          27                           120
  CLUS_4                           6                           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED        7     31     20
  DEL PEAK  2(1P22.1) WILD-TYPE    164    174     95
D30V6, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           7                           164
  CLUS_2                          31                           174
  CLUS_3                          20                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED       41      5      2      9
  DEL PEAK  2(1P22.1) WILD-TYPE    167     66    121     77
D30V7, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          41                           167
  CLUS_2                           5                            66
  CLUS_3                           2                           121
  CLUS_4                           9                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P22.1) MUTATED       10      6      9     26      6
  DEL PEAK  2(1P22.1) WILD-TYPE    137     92     50    102     50
D30V8, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          10                           137
  CLUS_2                           6                            92
  CLUS_3                           9                            50
  CLUS_4                          26                           102
  CLUS_5                           6                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED        3     18      8     12
  DEL PEAK  2(1P22.1) WILD-TYPE     62     73     70     72
D30V9, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           3                            62
  CLUS_2                          18                            73
  CLUS_3                           8                            70
  CLUS_4                          12                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P22.1) MUTATED        1     24      8      0      8
  DEL PEAK  2(1P22.1) WILD-TYPE     74     62     61     23     57
D30V10, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           1                            74
  CLUS_2                          24                            62
  CLUS_3                           8                            61
  CLUS_4                           0                            23
  CLUS_5                           8                            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  3(1Q23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q23.1) MUTATED        4      2      6     16
  DEL PEAK  3(1Q23.1) WILD-TYPE    104     89     92    179
D31V1, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           4                           104
  CLUS_2                           2                            89
  CLUS_3                           6                            92
  CLUS_4                          16                           179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q23.1) MUTATED        3     16      5      4
  DEL PEAK  3(1Q23.1) WILD-TYPE    158    121    119     66
D31V2, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           3                           158
  CLUS_2                          16                           121
  CLUS_3                           5                           119
  CLUS_4                           4                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q23.1) MUTATED        7      2      1      1      5      1
  DEL PEAK  3(1Q23.1) WILD-TYPE     98     49     43     50     53     37
D31V3, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           7                            98
  CLUS_2                           2                            49
  CLUS_3                           1                            43
  CLUS_4                           1                            50
  CLUS_5                           5                            53
  CLUS_6                           1                            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q23.1) MUTATED        5      4      5      3
  DEL PEAK  3(1Q23.1) WILD-TYPE     69    109     87     65
D31V4, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           5                            69
  CLUS_2                           4                           109
  CLUS_3                           5                            87
  CLUS_4                           3                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q23.1) MUTATED        5      6     16      1
  DEL PEAK  3(1Q23.1) WILD-TYPE     90    135    131    107
D31V5, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           5                            90
  CLUS_2                           6                           135
  CLUS_3                          16                           131
  CLUS_4                           1                           107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q23.1) MUTATED        2     20      6
  DEL PEAK  3(1Q23.1) WILD-TYPE    169    185    109
D31V6, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           2                           169
  CLUS_2                          20                           185
  CLUS_3                           6                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q23.1) MUTATED       15      4      1      8
  DEL PEAK  3(1Q23.1) WILD-TYPE    193     67    122     78
D31V7, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                          15                           193
  CLUS_2                           4                            67
  CLUS_3                           1                           122
  CLUS_4                           8                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q23.1) MUTATED        3      8      2      9      6
  DEL PEAK  3(1Q23.1) WILD-TYPE    144     90     57    119     50
D31V8, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           3                           144
  CLUS_2                           8                            90
  CLUS_3                           2                            57
  CLUS_4                           9                           119
  CLUS_5                           6                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q23.1) MUTATED        0     11      3      6
  DEL PEAK  3(1Q23.1) WILD-TYPE     65     80     75     78
D31V9, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                          11                            80
  CLUS_3                           3                            75
  CLUS_4                           6                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q23.1) MUTATED        2      8      6      0      4
  DEL PEAK  3(1Q23.1) WILD-TYPE     73     78     63     23     61
D31V10, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           2                            73
  CLUS_2                           8                            78
  CLUS_3                           6                            63
  CLUS_4                           0                            23
  CLUS_5                           4                            61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  4(1Q42.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q42.3) MUTATED        5      1     14     27
  DEL PEAK  4(1Q42.3) WILD-TYPE    103     90     84    168
D32V1, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                           5                           103
  CLUS_2                           1                            90
  CLUS_3                          14                            84
  CLUS_4                          27                           168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q42.3) MUTATED        5     28     12      2
  DEL PEAK  4(1Q42.3) WILD-TYPE    156    109    112     68
D32V2, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                           5                           156
  CLUS_2                          28                           109
  CLUS_3                          12                           112
  CLUS_4                           2                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(1Q42.3) MUTATED        8      9      2      4      6      2
  DEL PEAK  4(1Q42.3) WILD-TYPE     97     42     42     47     52     36
D32V3, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                           8                            97
  CLUS_2                           9                            42
  CLUS_3                           2                            42
  CLUS_4                           4                            47
  CLUS_5                           6                            52
  CLUS_6                           2                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q42.3) MUTATED        4     12      6      9
  DEL PEAK  4(1Q42.3) WILD-TYPE     70    101     86     59
D32V4, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                           4                            70
  CLUS_2                          12                           101
  CLUS_3                           6                            86
  CLUS_4                           9                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q42.3) MUTATED        5      8     23     11
  DEL PEAK  4(1Q42.3) WILD-TYPE     90    133    124     97
D32V5, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                           5                            90
  CLUS_2                           8                           133
  CLUS_3                          23                           124
  CLUS_4                          11                            97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q42.3) MUTATED       11     27      9
  DEL PEAK  4(1Q42.3) WILD-TYPE    160    178    106
D32V6, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                          11                           160
  CLUS_2                          27                           178
  CLUS_3                           9                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q42.3) MUTATED       30      7      3      7
  DEL PEAK  4(1Q42.3) WILD-TYPE    178     64    120     79
D32V7, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                          30                           178
  CLUS_2                           7                            64
  CLUS_3                           3                           120
  CLUS_4                           7                            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(1Q42.3) MUTATED       10      6      3     21      7
  DEL PEAK  4(1Q42.3) WILD-TYPE    137     92     56    107     49
D32V8, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                          10                           137
  CLUS_2                           6                            92
  CLUS_3                           3                            56
  CLUS_4                          21                           107
  CLUS_5                           7                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q42.3) MUTATED        4     11      8     10
  DEL PEAK  4(1Q42.3) WILD-TYPE     61     80     70     74
D32V9, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                           4                            61
  CLUS_2                          11                            80
  CLUS_3                           8                            70
  CLUS_4                          10                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(1Q42.3) MUTATED        2     16      7      1      7
  DEL PEAK  4(1Q42.3) WILD-TYPE     73     70     62     22     58
D32V10, multiclass
        clus
vv       DEL PEAK  4(1Q42.3) MUTATED DEL PEAK  4(1Q42.3) WILD-TYPE
  CLUS_1                           2                            73
  CLUS_2                          16                            70
  CLUS_3                           7                            62
  CLUS_4                           1                            22
  CLUS_5                           7                            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  5(2P21) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P21) MUTATED        8      1      7     30
  DEL PEAK  5(2P21) WILD-TYPE    100     90     91    165
D33V1, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         8                         100
  CLUS_2                         1                          90
  CLUS_3                         7                          91
  CLUS_4                        30                         165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P21) MUTATED        3     13     20     10
  DEL PEAK  5(2P21) WILD-TYPE    158    124    104     60
D33V2, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         3                         158
  CLUS_2                        13                         124
  CLUS_3                        20                         104
  CLUS_4                        10                          60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2P21) MUTATED        7      7      4      3      4      6
  DEL PEAK  5(2P21) WILD-TYPE     98     44     40     48     54     32
D33V3, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         7                          98
  CLUS_2                         7                          44
  CLUS_3                         4                          40
  CLUS_4                         3                          48
  CLUS_5                         4                          54
  CLUS_6                         6                          32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P21) MUTATED        5      9      8      9
  DEL PEAK  5(2P21) WILD-TYPE     69    104     84     59
D33V4, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         5                          69
  CLUS_2                         9                         104
  CLUS_3                         8                          84
  CLUS_4                         9                          59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P21) MUTATED        2     21     18      5
  DEL PEAK  5(2P21) WILD-TYPE     93    120    129    103
D33V5, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         2                          93
  CLUS_2                        21                         120
  CLUS_3                        18                         129
  CLUS_4                         5                         103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P21) MUTATED        8     23     15
  DEL PEAK  5(2P21) WILD-TYPE    163    182    100
D33V6, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         8                         163
  CLUS_2                        23                         182
  CLUS_3                        15                         100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P21) MUTATED       31      2      5      5
  DEL PEAK  5(2P21) WILD-TYPE    177     69    118     81
D33V7, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                        31                         177
  CLUS_2                         2                          69
  CLUS_3                         5                         118
  CLUS_4                         5                          81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2P21) MUTATED       11      4      4     19      5
  DEL PEAK  5(2P21) WILD-TYPE    136     94     55    109     51
D33V8, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                        11                         136
  CLUS_2                         4                          94
  CLUS_3                         4                          55
  CLUS_4                        19                         109
  CLUS_5                         5                          51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P21) MUTATED        3     13      4      4
  DEL PEAK  5(2P21) WILD-TYPE     62     78     74     80
D33V9, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         3                          62
  CLUS_2                        13                          78
  CLUS_3                         4                          74
  CLUS_4                         4                          80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2P21) MUTATED        3     10      5      3      3
  DEL PEAK  5(2P21) WILD-TYPE     72     76     64     20     62
D33V10, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         3                          72
  CLUS_2                        10                          76
  CLUS_3                         5                          64
  CLUS_4                         3                          20
  CLUS_5                         3                          62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  6(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q22.1) MUTATED        4      1     21     66
  DEL PEAK  6(2Q22.1) WILD-TYPE    104     90     77    129
D34V1, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           4                           104
  CLUS_2                           1                            90
  CLUS_3                          21                            77
  CLUS_4                          66                           129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q22.1) MUTATED        8     53     15     16
  DEL PEAK  6(2Q22.1) WILD-TYPE    153     84    109     54
D34V2, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           8                           153
  CLUS_2                          53                            84
  CLUS_3                          15                           109
  CLUS_4                          16                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(2Q22.1) MUTATED       12     11      9      5     21      4
  DEL PEAK  6(2Q22.1) WILD-TYPE     93     40     35     46     37     34
D34V3, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                          12                            93
  CLUS_2                          11                            40
  CLUS_3                           9                            35
  CLUS_4                           5                            46
  CLUS_5                          21                            37
  CLUS_6                           4                            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q22.1) MUTATED        9     17     16     20
  DEL PEAK  6(2Q22.1) WILD-TYPE     65     96     76     48
D34V4, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           9                            65
  CLUS_2                          17                            96
  CLUS_3                          16                            76
  CLUS_4                          20                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q22.1) MUTATED        8     20     56      8
  DEL PEAK  6(2Q22.1) WILD-TYPE     87    121     91    100
D34V5, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           8                            87
  CLUS_2                          20                           121
  CLUS_3                          56                            91
  CLUS_4                           8                           100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.1) MUTATED       10     64     18
  DEL PEAK  6(2Q22.1) WILD-TYPE    161    141     97
D34V6, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                          10                           161
  CLUS_2                          64                           141
  CLUS_3                          18                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q22.1) MUTATED       58      9      6     19
  DEL PEAK  6(2Q22.1) WILD-TYPE    150     62    117     67
D34V7, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                          58                           150
  CLUS_2                           9                            62
  CLUS_3                           6                           117
  CLUS_4                          19                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q22.1) MUTATED       16     20      3     39     14
  DEL PEAK  6(2Q22.1) WILD-TYPE    131     78     56     89     42
D34V8, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                          16                           131
  CLUS_2                          20                            78
  CLUS_3                           3                            56
  CLUS_4                          39                            89
  CLUS_5                          14                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q22.1) MUTATED        4     27     11     19
  DEL PEAK  6(2Q22.1) WILD-TYPE     61     64     67     65
D34V9, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           4                            61
  CLUS_2                          27                            64
  CLUS_3                          11                            67
  CLUS_4                          19                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q22.1) MUTATED        8     29     12      1     11
  DEL PEAK  6(2Q22.1) WILD-TYPE     67     57     57     22     54
D34V10, multiclass
        clus
vv       DEL PEAK  6(2Q22.1) MUTATED DEL PEAK  6(2Q22.1) WILD-TYPE
  CLUS_1                           8                            67
  CLUS_2                          29                            57
  CLUS_3                          12                            57
  CLUS_4                           1                            22
  CLUS_5                          11                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  7(2Q22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.3) MUTATED        7      1     17     60
  DEL PEAK  7(2Q22.3) WILD-TYPE    101     90     81    135
D35V1, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                           7                           101
  CLUS_2                           1                            90
  CLUS_3                          17                            81
  CLUS_4                          60                           135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.3) MUTATED        8     47     16     14
  DEL PEAK  7(2Q22.3) WILD-TYPE    153     90    108     56
D35V2, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                           8                           153
  CLUS_2                          47                            90
  CLUS_3                          16                           108
  CLUS_4                          14                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(2Q22.3) MUTATED        9     12      6      3     17      5
  DEL PEAK  7(2Q22.3) WILD-TYPE     96     39     38     48     41     33
D35V3, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                           9                            96
  CLUS_2                          12                            39
  CLUS_3                           6                            38
  CLUS_4                           3                            48
  CLUS_5                          17                            41
  CLUS_6                           5                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.3) MUTATED        7     18     11     16
  DEL PEAK  7(2Q22.3) WILD-TYPE     67     95     81     52
D35V4, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                           7                            67
  CLUS_2                          18                            95
  CLUS_3                          11                            81
  CLUS_4                          16                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.3) MUTATED       10     18     50      7
  DEL PEAK  7(2Q22.3) WILD-TYPE     85    123     97    101
D35V5, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                          10                            85
  CLUS_2                          18                           123
  CLUS_3                          50                            97
  CLUS_4                           7                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.3) MUTATED       12     56     17
  DEL PEAK  7(2Q22.3) WILD-TYPE    159    149     98
D35V6, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                          12                           159
  CLUS_2                          56                           149
  CLUS_3                          17                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.3) MUTATED       50      9      5     21
  DEL PEAK  7(2Q22.3) WILD-TYPE    158     62    118     65
D35V7, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                          50                           158
  CLUS_2                           9                            62
  CLUS_3                           5                           118
  CLUS_4                          21                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(2Q22.3) MUTATED       14     15      4     36     16
  DEL PEAK  7(2Q22.3) WILD-TYPE    133     83     55     92     40
D35V8, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                          14                           133
  CLUS_2                          15                            83
  CLUS_3                           4                            55
  CLUS_4                          36                            92
  CLUS_5                          16                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.3) MUTATED        4     24     10     18
  DEL PEAK  7(2Q22.3) WILD-TYPE     61     67     68     66
D35V9, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                           4                            61
  CLUS_2                          24                            67
  CLUS_3                          10                            68
  CLUS_4                          18                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(2Q22.3) MUTATED        7     26     11      0     12
  DEL PEAK  7(2Q22.3) WILD-TYPE     68     60     58     23     53
D35V10, multiclass
        clus
vv       DEL PEAK  7(2Q22.3) MUTATED DEL PEAK  7(2Q22.3) WILD-TYPE
  CLUS_1                           7                            68
  CLUS_2                          26                            60
  CLUS_3                          11                            58
  CLUS_4                           0                            23
  CLUS_5                          12                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  8(3P13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P13) MUTATED       30      8     17     23
  DEL PEAK  8(3P13) WILD-TYPE     78     83     81    172
D36V1, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                        30                          78
  CLUS_2                         8                          83
  CLUS_3                        17                          81
  CLUS_4                        23                         172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P13) MUTATED       18     10     42      8
  DEL PEAK  8(3P13) WILD-TYPE    143    127     82     62
D36V2, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                        18                         143
  CLUS_2                        10                         127
  CLUS_3                        42                          82
  CLUS_4                         8                          62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P13) MUTATED       16      5      3     15      6      5
  DEL PEAK  8(3P13) WILD-TYPE     89     46     41     36     52     33
D36V3, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                        16                          89
  CLUS_2                         5                          46
  CLUS_3                         3                          41
  CLUS_4                        15                          36
  CLUS_5                         6                          52
  CLUS_6                         5                          33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P13) MUTATED        6     19     17      8
  DEL PEAK  8(3P13) WILD-TYPE     68     94     75     60
D36V4, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                         6                          68
  CLUS_2                        19                          94
  CLUS_3                        17                          75
  CLUS_4                         8                          60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P13) MUTATED        8     47     12     11
  DEL PEAK  8(3P13) WILD-TYPE     87     94    135     97
D36V5, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                         8                          87
  CLUS_2                        47                          94
  CLUS_3                        12                         135
  CLUS_4                        11                          97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P13) MUTATED       20     19     39
  DEL PEAK  8(3P13) WILD-TYPE    151    186     76
D36V6, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                        20                         151
  CLUS_2                        19                         186
  CLUS_3                        39                          76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P13) MUTATED       40      8     20      8
  DEL PEAK  8(3P13) WILD-TYPE    168     63    103     78
D36V7, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                        40                         168
  CLUS_2                         8                          63
  CLUS_3                        20                         103
  CLUS_4                         8                          78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P13) MUTATED       23     12     17     18      6
  DEL PEAK  8(3P13) WILD-TYPE    124     86     42    110     50
D36V8, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                        23                         124
  CLUS_2                        12                          86
  CLUS_3                        17                          42
  CLUS_4                        18                         110
  CLUS_5                         6                          50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P13) MUTATED       14     19      7      4
  DEL PEAK  8(3P13) WILD-TYPE     51     72     71     80
D36V9, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                        14                          51
  CLUS_2                        19                          72
  CLUS_3                         7                          71
  CLUS_4                         4                          80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P13) MUTATED       10     15      6      7      6
  DEL PEAK  8(3P13) WILD-TYPE     65     71     63     16     59
D36V10, multiclass
        clus
vv       DEL PEAK  8(3P13) MUTATED DEL PEAK  8(3P13) WILD-TYPE
  CLUS_1                        10                          65
  CLUS_2                        15                          71
  CLUS_3                         6                          63
  CLUS_4                         7                          16
  CLUS_5                         6                          59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  9(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q29) MUTATED        8      4      6     14
  DEL PEAK  9(3Q29) WILD-TYPE    100     87     92    181
D37V1, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                         8                         100
  CLUS_2                         4                          87
  CLUS_3                         6                          92
  CLUS_4                        14                         181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q29) MUTATED       10      5      8      9
  DEL PEAK  9(3Q29) WILD-TYPE    151    132    116     61
D37V2, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                        10                         151
  CLUS_2                         5                         132
  CLUS_3                         8                         116
  CLUS_4                         9                          61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3Q29) MUTATED        9      4      1      2      2      5
  DEL PEAK  9(3Q29) WILD-TYPE     96     47     43     49     56     33
D37V3, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                         9                          96
  CLUS_2                         4                          47
  CLUS_3                         1                          43
  CLUS_4                         2                          49
  CLUS_5                         2                          56
  CLUS_6                         5                          33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q29) MUTATED        7      6      5      5
  DEL PEAK  9(3Q29) WILD-TYPE     67    107     87     63
D37V4, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                         7                          67
  CLUS_2                         6                         107
  CLUS_3                         5                          87
  CLUS_4                         5                          63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q29) MUTATED        4     17      7      4
  DEL PEAK  9(3Q29) WILD-TYPE     91    124    140    104
D37V5, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                         4                          91
  CLUS_2                        17                         124
  CLUS_3                         7                         140
  CLUS_4                         4                         104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q29) MUTATED        9     10     13
  DEL PEAK  9(3Q29) WILD-TYPE    162    195    102
D37V6, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                         9                         162
  CLUS_2                        10                         195
  CLUS_3                        13                         102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q29) MUTATED       15      6      6      4
  DEL PEAK  9(3Q29) WILD-TYPE    193     65    117     82
D37V7, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                        15                         193
  CLUS_2                         6                          65
  CLUS_3                         6                         117
  CLUS_4                         4                          82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3Q29) MUTATED        7      4      5     13      2
  DEL PEAK  9(3Q29) WILD-TYPE    140     94     54    115     54
D37V8, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                         7                         140
  CLUS_2                         4                          94
  CLUS_3                         5                          54
  CLUS_4                        13                         115
  CLUS_5                         2                          54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q29) MUTATED        3      7      8      2
  DEL PEAK  9(3Q29) WILD-TYPE     62     84     70     82
D37V9, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                         3                          62
  CLUS_2                         7                          84
  CLUS_3                         8                          70
  CLUS_4                         2                          82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3Q29) MUTATED        6      5      5      2      2
  DEL PEAK  9(3Q29) WILD-TYPE     69     81     64     21     63
D37V10, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                         6                          69
  CLUS_2                         5                          81
  CLUS_3                         5                          64
  CLUS_4                         2                          21
  CLUS_5                         2                          63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 10(4Q28.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q28.2) MUTATED        3      0      7     41
  DEL PEAK 10(4Q28.2) WILD-TYPE    105     91     91    154
D38V1, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                           3                           105
  CLUS_2                           0                            91
  CLUS_3                           7                            91
  CLUS_4                          41                           154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q28.2) MUTATED        3     29      9     10
  DEL PEAK 10(4Q28.2) WILD-TYPE    158    108    115     60
D38V2, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                           3                           158
  CLUS_2                          29                           108
  CLUS_3                           9                           115
  CLUS_4                          10                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q28.2) MUTATED        7      8      3      4      9      4
  DEL PEAK 10(4Q28.2) WILD-TYPE     98     43     41     47     49     34
D38V3, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                           7                            98
  CLUS_2                           8                            43
  CLUS_3                           3                            41
  CLUS_4                           4                            47
  CLUS_5                           9                            49
  CLUS_6                           4                            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q28.2) MUTATED        4      9      9     13
  DEL PEAK 10(4Q28.2) WILD-TYPE     70    104     83     55
D38V4, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                           4                            70
  CLUS_2                           9                           104
  CLUS_3                           9                            83
  CLUS_4                          13                            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q28.2) MUTATED        4      9     35      3
  DEL PEAK 10(4Q28.2) WILD-TYPE     91    132    112    105
D38V5, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                           4                            91
  CLUS_2                           9                           132
  CLUS_3                          35                           112
  CLUS_4                           3                           105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q28.2) MUTATED        5     37      9
  DEL PEAK 10(4Q28.2) WILD-TYPE    166    168    106
D38V6, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                           5                           166
  CLUS_2                          37                           168
  CLUS_3                           9                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q28.2) MUTATED       32      4      4     10
  DEL PEAK 10(4Q28.2) WILD-TYPE    176     67    119     76
D38V7, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                          32                           176
  CLUS_2                           4                            67
  CLUS_3                           4                           119
  CLUS_4                          10                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q28.2) MUTATED       11      8      3     24      4
  DEL PEAK 10(4Q28.2) WILD-TYPE    136     90     56    104     52
D38V8, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                          11                           136
  CLUS_2                           8                            90
  CLUS_3                           3                            56
  CLUS_4                          24                           104
  CLUS_5                           4                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q28.2) MUTATED        0     13      6     10
  DEL PEAK 10(4Q28.2) WILD-TYPE     65     78     72     74
D38V9, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                          13                            78
  CLUS_3                           6                            72
  CLUS_4                          10                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q28.2) MUTATED        2     17      6      0      4
  DEL PEAK 10(4Q28.2) WILD-TYPE     73     69     63     23     61
D38V10, multiclass
        clus
vv       DEL PEAK 10(4Q28.2) MUTATED DEL PEAK 10(4Q28.2) WILD-TYPE
  CLUS_1                           2                            73
  CLUS_2                          17                            69
  CLUS_3                           6                            63
  CLUS_4                           0                            23
  CLUS_5                           4                            61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 11(5Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q11.2) MUTATED       12      2     13     78
  DEL PEAK 11(5Q11.2) WILD-TYPE     96     89     85    117
D39V1, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                          12                            96
  CLUS_2                           2                            89
  CLUS_3                          13                            85
  CLUS_4                          78                           117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q11.2) MUTATED       13     39     31     22
  DEL PEAK 11(5Q11.2) WILD-TYPE    148     98     93     48
D39V2, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                          13                           148
  CLUS_2                          39                            98
  CLUS_3                          31                            93
  CLUS_4                          22                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q11.2) MUTATED       17     18      8      8     16     10
  DEL PEAK 11(5Q11.2) WILD-TYPE     88     33     36     43     42     28
D39V3, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                          17                            88
  CLUS_2                          18                            33
  CLUS_3                           8                            36
  CLUS_4                           8                            43
  CLUS_5                          16                            42
  CLUS_6                          10                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q11.2) MUTATED       12     27     20     18
  DEL PEAK 11(5Q11.2) WILD-TYPE     62     86     72     50
D39V4, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                          12                            62
  CLUS_2                          27                            86
  CLUS_3                          20                            72
  CLUS_4                          18                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q11.2) MUTATED        5     31     53     16
  DEL PEAK 11(5Q11.2) WILD-TYPE     90    110     94     92
D39V5, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                           5                            90
  CLUS_2                          31                           110
  CLUS_3                          53                            94
  CLUS_4                          16                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q11.2) MUTATED       18     57     30
  DEL PEAK 11(5Q11.2) WILD-TYPE    153    148     85
D39V6, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                          18                           153
  CLUS_2                          57                           148
  CLUS_3                          30                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q11.2) MUTATED       67      8     16     13
  DEL PEAK 11(5Q11.2) WILD-TYPE    141     63    107     73
D39V7, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                          67                           141
  CLUS_2                           8                            63
  CLUS_3                          16                           107
  CLUS_4                          13                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q11.2) MUTATED       21      9     16     47     11
  DEL PEAK 11(5Q11.2) WILD-TYPE    126     89     43     81     45
D39V8, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                          21                           126
  CLUS_2                           9                            89
  CLUS_3                          16                            43
  CLUS_4                          47                            81
  CLUS_5                          11                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q11.2) MUTATED        6     34     12     19
  DEL PEAK 11(5Q11.2) WILD-TYPE     59     57     66     65
D39V9, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                           6                            59
  CLUS_2                          34                            57
  CLUS_3                          12                            66
  CLUS_4                          19                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q11.2) MUTATED       10     36     12      2     11
  DEL PEAK 11(5Q11.2) WILD-TYPE     65     50     57     21     54
D39V10, multiclass
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  CLUS_1                          10                            65
  CLUS_2                          36                            50
  CLUS_3                          12                            57
  CLUS_4                           2                            21
  CLUS_5                          11                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 12(5Q13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q13.2) MUTATED       12      1     12     74
  DEL PEAK 12(5Q13.2) WILD-TYPE     96     90     86    121
D40V1, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                          12                            96
  CLUS_2                           1                            90
  CLUS_3                          12                            86
  CLUS_4                          74                           121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q13.2) MUTATED       12     40     24     23
  DEL PEAK 12(5Q13.2) WILD-TYPE    149     97    100     47
D40V2, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                          12                           149
  CLUS_2                          40                            97
  CLUS_3                          24                           100
  CLUS_4                          23                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q13.2) MUTATED       16     18      6      9     15      9
  DEL PEAK 12(5Q13.2) WILD-TYPE     89     33     38     42     43     29
D40V3, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                          16                            89
  CLUS_2                          18                            33
  CLUS_3                           6                            38
  CLUS_4                           9                            42
  CLUS_5                          15                            43
  CLUS_6                           9                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q13.2) MUTATED       12     24     21     16
  DEL PEAK 12(5Q13.2) WILD-TYPE     62     89     71     52
D40V4, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                          12                            62
  CLUS_2                          24                            89
  CLUS_3                          21                            71
  CLUS_4                          16                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q13.2) MUTATED        2     27     53     17
  DEL PEAK 12(5Q13.2) WILD-TYPE     93    114     94     91
D40V5, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                           2                            93
  CLUS_2                          27                           114
  CLUS_3                          53                            94
  CLUS_4                          17                            91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q13.2) MUTATED       21     54     24
  DEL PEAK 12(5Q13.2) WILD-TYPE    150    151     91
D40V6, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                          21                           150
  CLUS_2                          54                           151
  CLUS_3                          24                            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q13.2) MUTATED       65      4     20      9
  DEL PEAK 12(5Q13.2) WILD-TYPE    143     67    103     77
D40V7, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                          65                           143
  CLUS_2                           4                            67
  CLUS_3                          20                           103
  CLUS_4                           9                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q13.2) MUTATED       27      7     14     44      6
  DEL PEAK 12(5Q13.2) WILD-TYPE    120     91     45     84     50
D40V8, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                          27                           120
  CLUS_2                           7                            91
  CLUS_3                          14                            45
  CLUS_4                          44                            84
  CLUS_5                           6                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q13.2) MUTATED        6     30     13     15
  DEL PEAK 12(5Q13.2) WILD-TYPE     59     61     65     69
D40V9, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                           6                            59
  CLUS_2                          30                            61
  CLUS_3                          13                            65
  CLUS_4                          15                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q13.2) MUTATED       12     34      9      4      5
  DEL PEAK 12(5Q13.2) WILD-TYPE     63     52     60     19     60
D40V10, multiclass
        clus
vv       DEL PEAK 12(5Q13.2) MUTATED DEL PEAK 12(5Q13.2) WILD-TYPE
  CLUS_1                          12                            63
  CLUS_2                          34                            52
  CLUS_3                           9                            60
  CLUS_4                           4                            19
  CLUS_5                           5                            60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 13(5Q21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.1) MUTATED        5      1     26     77
  DEL PEAK 13(5Q21.1) WILD-TYPE    103     90     72    118
D41V1, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                           5                           103
  CLUS_2                           1                            90
  CLUS_3                          26                            72
  CLUS_4                          77                           118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.1) MUTATED       12     60     21     16
  DEL PEAK 13(5Q21.1) WILD-TYPE    149     77    103     54
D41V2, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          12                           149
  CLUS_2                          60                            77
  CLUS_3                          21                           103
  CLUS_4                          16                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(5Q21.1) MUTATED       17     16      6      9     18      8
  DEL PEAK 13(5Q21.1) WILD-TYPE     88     35     38     42     40     30
D41V3, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          17                            88
  CLUS_2                          16                            35
  CLUS_3                           6                            38
  CLUS_4                           9                            42
  CLUS_5                          18                            40
  CLUS_6                           8                            30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.1) MUTATED       11     26     17     20
  DEL PEAK 13(5Q21.1) WILD-TYPE     63     87     75     48
D41V4, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          11                            63
  CLUS_2                          26                            87
  CLUS_3                          17                            75
  CLUS_4                          20                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.1) MUTATED        9     18     70     12
  DEL PEAK 13(5Q21.1) WILD-TYPE     86    123     77     96
D41V5, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                           9                            86
  CLUS_2                          18                           123
  CLUS_3                          70                            77
  CLUS_4                          12                            96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.1) MUTATED       17     72     20
  DEL PEAK 13(5Q21.1) WILD-TYPE    154    133     95
D41V6, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          17                           154
  CLUS_2                          72                           133
  CLUS_3                          20                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.1) MUTATED       69      6     15     18
  DEL PEAK 13(5Q21.1) WILD-TYPE    139     65    108     68
D41V7, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          69                           139
  CLUS_2                           6                            65
  CLUS_3                          15                           108
  CLUS_4                          18                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(5Q21.1) MUTATED       26     14     14     44     10
  DEL PEAK 13(5Q21.1) WILD-TYPE    121     84     45     84     46
D41V8, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                          26                           121
  CLUS_2                          14                            84
  CLUS_3                          14                            45
  CLUS_4                          44                            84
  CLUS_5                          10                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.1) MUTATED        7     25     10     25
  DEL PEAK 13(5Q21.1) WILD-TYPE     58     66     68     59
D41V9, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                           7                            58
  CLUS_2                          25                            66
  CLUS_3                          10                            68
  CLUS_4                          25                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(5Q21.1) MUTATED        8     33     13      2     11
  DEL PEAK 13(5Q21.1) WILD-TYPE     67     53     56     21     54
D41V10, multiclass
        clus
vv       DEL PEAK 13(5Q21.1) MUTATED DEL PEAK 13(5Q21.1) WILD-TYPE
  CLUS_1                           8                            67
  CLUS_2                          33                            53
  CLUS_3                          13                            56
  CLUS_4                           2                            21
  CLUS_5                          11                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 14(6P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(6P25.1) MUTATED       10      0      6     30
  DEL PEAK 14(6P25.1) WILD-TYPE     98     91     92    165
D42V1, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                          10                            98
  CLUS_2                           0                            91
  CLUS_3                           6                            92
  CLUS_4                          30                           165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(6P25.1) MUTATED        7     11     15     13
  DEL PEAK 14(6P25.1) WILD-TYPE    154    126    109     57
D42V2, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                           7                           154
  CLUS_2                          11                           126
  CLUS_3                          15                           109
  CLUS_4                          13                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(6P25.1) MUTATED        6      4      5      4      4      9
  DEL PEAK 14(6P25.1) WILD-TYPE     99     47     39     47     54     29
D42V3, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                           6                            99
  CLUS_2                           4                            47
  CLUS_3                           5                            39
  CLUS_4                           4                            47
  CLUS_5                           4                            54
  CLUS_6                           9                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(6P25.1) MUTATED        7     10      5     10
  DEL PEAK 14(6P25.1) WILD-TYPE     67    103     87     58
D42V4, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                           7                            67
  CLUS_2                          10                           103
  CLUS_3                           5                            87
  CLUS_4                          10                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(6P25.1) MUTATED        3     20     14      9
  DEL PEAK 14(6P25.1) WILD-TYPE     92    121    133     99
D42V5, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                           3                            92
  CLUS_2                          20                           121
  CLUS_3                          14                           133
  CLUS_4                           9                            99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6P25.1) MUTATED       10     17     19
  DEL PEAK 14(6P25.1) WILD-TYPE    161    188     96
D42V6, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                          10                           161
  CLUS_2                          17                           188
  CLUS_3                          19                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(6P25.1) MUTATED       25      3     11      7
  DEL PEAK 14(6P25.1) WILD-TYPE    183     68    112     79
D42V7, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                          25                           183
  CLUS_2                           3                            68
  CLUS_3                          11                           112
  CLUS_4                           7                            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(6P25.1) MUTATED        9      5      8     19      5
  DEL PEAK 14(6P25.1) WILD-TYPE    138     93     51    109     51
D42V8, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                           9                           138
  CLUS_2                           5                            93
  CLUS_3                           8                            51
  CLUS_4                          19                           109
  CLUS_5                           5                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(6P25.1) MUTATED        2     11      8     11
  DEL PEAK 14(6P25.1) WILD-TYPE     63     80     70     73
D42V9, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                           2                            63
  CLUS_2                          11                            80
  CLUS_3                           8                            70
  CLUS_4                          11                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(6P25.1) MUTATED        6     11      5      2      8
  DEL PEAK 14(6P25.1) WILD-TYPE     69     75     64     21     57
D42V10, multiclass
        clus
vv       DEL PEAK 14(6P25.1) MUTATED DEL PEAK 14(6P25.1) WILD-TYPE
  CLUS_1                           6                            69
  CLUS_2                          11                            75
  CLUS_3                           5                            64
  CLUS_4                           2                            21
  CLUS_5                           8                            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 15(6Q14.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6Q14.3) MUTATED        8      4     62    106
  DEL PEAK 15(6Q14.3) WILD-TYPE    100     87     36     89
D43V1, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                           8                           100
  CLUS_2                           4                            87
  CLUS_3                          62                            36
  CLUS_4                         106                            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6Q14.3) MUTATED       23    101     27     29
  DEL PEAK 15(6Q14.3) WILD-TYPE    138     36     97     41
D43V2, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                          23                           138
  CLUS_2                         101                            36
  CLUS_3                          27                            97
  CLUS_4                          29                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(6Q14.3) MUTATED       26     19     13     20     33     15
  DEL PEAK 15(6Q14.3) WILD-TYPE     79     32     31     31     25     23
D43V3, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                          26                            79
  CLUS_2                          19                            32
  CLUS_3                          13                            31
  CLUS_4                          20                            31
  CLUS_5                          33                            25
  CLUS_6                          15                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6Q14.3) MUTATED       19     43     24     40
  DEL PEAK 15(6Q14.3) WILD-TYPE     55     70     68     28
D43V4, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                          19                            55
  CLUS_2                          43                            70
  CLUS_3                          24                            68
  CLUS_4                          40                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6Q14.3) MUTATED       25     33     93     29
  DEL PEAK 15(6Q14.3) WILD-TYPE     70    108     54     79
D43V5, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                          25                            70
  CLUS_2                          33                           108
  CLUS_3                          93                            54
  CLUS_4                          29                            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6Q14.3) MUTATED       33    117     30
  DEL PEAK 15(6Q14.3) WILD-TYPE    138     88     85
D43V6, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                          33                           138
  CLUS_2                         117                            88
  CLUS_3                          30                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6Q14.3) MUTATED      106     20     20     33
  DEL PEAK 15(6Q14.3) WILD-TYPE    102     51    103     53
D43V7, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                         106                           102
  CLUS_2                          20                            51
  CLUS_3                          20                           103
  CLUS_4                          33                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(6Q14.3) MUTATED       38     35     14     68     24
  DEL PEAK 15(6Q14.3) WILD-TYPE    109     63     45     60     32
D43V8, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                          38                           109
  CLUS_2                          35                            63
  CLUS_3                          14                            45
  CLUS_4                          68                            60
  CLUS_5                          24                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6Q14.3) MUTATED       14     40     23     32
  DEL PEAK 15(6Q14.3) WILD-TYPE     51     51     55     52
D43V9, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                          14                            51
  CLUS_2                          40                            51
  CLUS_3                          23                            55
  CLUS_4                          32                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(6Q14.3) MUTATED       20     41     25      3     20
  DEL PEAK 15(6Q14.3) WILD-TYPE     55     45     44     20     45
D43V10, multiclass
        clus
vv       DEL PEAK 15(6Q14.3) MUTATED DEL PEAK 15(6Q14.3) WILD-TYPE
  CLUS_1                          20                            55
  CLUS_2                          41                            45
  CLUS_3                          25                            44
  CLUS_4                           3                            20
  CLUS_5                          20                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 16(8P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P21.3) MUTATED       81     14     53    146
  DEL PEAK 16(8P21.3) WILD-TYPE     27     77     45     49
D44V1, multiclass
        clus
vv       DEL PEAK 16(8P21.3) MUTATED DEL PEAK 16(8P21.3) WILD-TYPE
  CLUS_1                          81                            27
  CLUS_2                          14                            77
  CLUS_3                          53                            45
  CLUS_4                         146                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P21.3) MUTATED       61     84     93     56
  DEL PEAK 16(8P21.3) WILD-TYPE    100     53     31     14
D44V2, multiclass
        clus
vv       DEL PEAK 16(8P21.3) MUTATED DEL PEAK 16(8P21.3) WILD-TYPE
  CLUS_1                          61                           100
  CLUS_2                          84                            53
  CLUS_3                          93                            31
  CLUS_4                          56                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(8P21.3) MUTATED       53     33     24     35     39     26
  DEL PEAK 16(8P21.3) WILD-TYPE     52     18     20     16     19     12
D44V3, multiclass
        clus
vv       DEL PEAK 16(8P21.3) MUTATED DEL PEAK 16(8P21.3) WILD-TYPE
  CLUS_1                          53                            52
  CLUS_2                          33                            18
  CLUS_3                          24                            20
  CLUS_4                          35                            16
  CLUS_5                          39                            19
  CLUS_6                          26                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P21.3) MUTATED       32     72     55     51
  DEL PEAK 16(8P21.3) WILD-TYPE     42     41     37     17
D44V4, multiclass
        clus
vv       DEL PEAK 16(8P21.3) MUTATED DEL PEAK 16(8P21.3) WILD-TYPE
  CLUS_1                          32                            42
  CLUS_2                          72                            41
  CLUS_3                          55                            37
  CLUS_4                          51                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P21.3) MUTATED       36    110     95     53
  DEL PEAK 16(8P21.3) WILD-TYPE     59     31     52     55
D44V5, multiclass
        clus
vv       DEL PEAK 16(8P21.3) MUTATED DEL PEAK 16(8P21.3) WILD-TYPE
  CLUS_1                          36                            59
  CLUS_2                         110                            31
  CLUS_3                          95                            52
  CLUS_4                          53                            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P21.3) MUTATED       77    128     89
  DEL PEAK 16(8P21.3) WILD-TYPE     94     77     26
D44V6, multiclass
        clus
vv       DEL PEAK 16(8P21.3) MUTATED DEL PEAK 16(8P21.3) WILD-TYPE
  CLUS_1                          77                            94
  CLUS_2                         128                            77
  CLUS_3                          89                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P21.3) MUTATED      149     31     59     53
  DEL PEAK 16(8P21.3) WILD-TYPE     59     40     64     33
D44V7, multiclass
        clus
vv       DEL PEAK 16(8P21.3) MUTATED DEL PEAK 16(8P21.3) WILD-TYPE
  CLUS_1                         149                            59
  CLUS_2                          31                            40
  CLUS_3                          59                            64
  CLUS_4                          53                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P21.3) MUTATED       67     50     42     97     36
  DEL PEAK 16(8P21.3) WILD-TYPE     80     48     17     31     20
D44V8, multiclass
        clus
vv       DEL PEAK 16(8P21.3) MUTATED DEL PEAK 16(8P21.3) WILD-TYPE
  CLUS_1                          67                            80
  CLUS_2                          50                            48
  CLUS_3                          42                            17
  CLUS_4                          97                            31
  CLUS_5                          36                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P21.3) MUTATED       27     61     40     50
  DEL PEAK 16(8P21.3) WILD-TYPE     38     30     38     34
D44V9, multiclass
        clus
vv       DEL PEAK 16(8P21.3) MUTATED DEL PEAK 16(8P21.3) WILD-TYPE
  CLUS_1                          27                            38
  CLUS_2                          61                            30
  CLUS_3                          40                            38
  CLUS_4                          50                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P21.3) MUTATED       29     57     39     13     40
  DEL PEAK 16(8P21.3) WILD-TYPE     46     29     30     10     25
D44V10, multiclass
        clus
vv       DEL PEAK 16(8P21.3) MUTATED DEL PEAK 16(8P21.3) WILD-TYPE
  CLUS_1                          29                            46
  CLUS_2                          57                            29
  CLUS_3                          39                            30
  CLUS_4                          13                            10
  CLUS_5                          40                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 17(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P23) MUTATED        3      2      6     34
  DEL PEAK 17(9P23) WILD-TYPE    105     89     92    161
D45V1, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         3                         105
  CLUS_2                         2                          89
  CLUS_3                         6                          92
  CLUS_4                        34                         161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P23) MUTATED        9     10     17      9
  DEL PEAK 17(9P23) WILD-TYPE    152    127    107     61
D45V2, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         9                         152
  CLUS_2                        10                         127
  CLUS_3                        17                         107
  CLUS_4                         9                          61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P23) MUTATED        2      6      3      8      5      7
  DEL PEAK 17(9P23) WILD-TYPE    103     45     41     43     53     31
D45V3, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         2                         103
  CLUS_2                         6                          45
  CLUS_3                         3                          41
  CLUS_4                         8                          43
  CLUS_5                         5                          53
  CLUS_6                         7                          31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P23) MUTATED        2     11      5     13
  DEL PEAK 17(9P23) WILD-TYPE     72    102     87     55
D45V4, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         2                          72
  CLUS_2                        11                         102
  CLUS_3                         5                          87
  CLUS_4                        13                          55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P23) MUTATED        4     16     18      7
  DEL PEAK 17(9P23) WILD-TYPE     91    125    129    101
D45V5, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         4                          91
  CLUS_2                        16                         125
  CLUS_3                        18                         129
  CLUS_4                         7                         101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED        7     19     19
  DEL PEAK 17(9P23) WILD-TYPE    164    186     96
D45V6, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         7                         164
  CLUS_2                        19                         186
  CLUS_3                        19                          96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P23) MUTATED       27      3      6      8
  DEL PEAK 17(9P23) WILD-TYPE    181     68    117     78
D45V7, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        27                         181
  CLUS_2                         3                          68
  CLUS_3                         6                         117
  CLUS_4                         8                          78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P23) MUTATED        9      9     10     14      2
  DEL PEAK 17(9P23) WILD-TYPE    138     89     49    114     54
D45V8, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         9                         138
  CLUS_2                         9                          89
  CLUS_3                        10                          49
  CLUS_4                        14                         114
  CLUS_5                         2                          54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P23) MUTATED        3     11      6      9
  DEL PEAK 17(9P23) WILD-TYPE     62     80     72     75
D45V9, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         3                          62
  CLUS_2                        11                          80
  CLUS_3                         6                          72
  CLUS_4                         9                          75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P23) MUTATED        3     14      5      2      5
  DEL PEAK 17(9P23) WILD-TYPE     72     72     64     21     60
D45V10, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         3                          72
  CLUS_2                        14                          72
  CLUS_3                         5                          64
  CLUS_4                         2                          21
  CLUS_5                         5                          60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 18(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q23.31) MUTATED       45      1     23     88
  DEL PEAK 18(10Q23.31) WILD-TYPE     63     90     75    107
D46V1, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            45                              63
  CLUS_2                             1                              90
  CLUS_3                            23                              75
  CLUS_4                            88                             107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q23.31) MUTATED       28     29     64     36
  DEL PEAK 18(10Q23.31) WILD-TYPE    133    108     60     34
D46V2, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            28                             133
  CLUS_2                            29                             108
  CLUS_3                            64                              60
  CLUS_4                            36                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10Q23.31) MUTATED       25     26     18     16     13     19
  DEL PEAK 18(10Q23.31) WILD-TYPE     80     25     26     35     45     19
D46V3, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            25                              80
  CLUS_2                            26                              25
  CLUS_3                            18                              26
  CLUS_4                            16                              35
  CLUS_5                            13                              45
  CLUS_6                            19                              19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q23.31) MUTATED       18     44     31     24
  DEL PEAK 18(10Q23.31) WILD-TYPE     56     69     61     44
D46V4, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            18                              56
  CLUS_2                            44                              69
  CLUS_3                            31                              61
  CLUS_4                            24                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q23.31) MUTATED        6     91     40     20
  DEL PEAK 18(10Q23.31) WILD-TYPE     89     50    107     88
D46V5, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                             6                              89
  CLUS_2                            91                              50
  CLUS_3                            40                             107
  CLUS_4                            20                              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       33     47     77
  DEL PEAK 18(10Q23.31) WILD-TYPE    138    158     38
D46V6, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            33                             138
  CLUS_2                            47                             158
  CLUS_3                            77                              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q23.31) MUTATED       79      9     32     35
  DEL PEAK 18(10Q23.31) WILD-TYPE    129     62     91     51
D46V7, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            79                             129
  CLUS_2                             9                              62
  CLUS_3                            32                              91
  CLUS_4                            35                              51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q23.31) MUTATED       41     12     25     57     20
  DEL PEAK 18(10Q23.31) WILD-TYPE    106     86     34     71     36
D46V8, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            41                             106
  CLUS_2                            12                              86
  CLUS_3                            25                              34
  CLUS_4                            57                              71
  CLUS_5                            20                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q23.31) MUTATED       15     36     24     36
  DEL PEAK 18(10Q23.31) WILD-TYPE     50     55     54     48
D46V9, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            15                              50
  CLUS_2                            36                              55
  CLUS_3                            24                              54
  CLUS_4                            36                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q23.31) MUTATED       13     43     21      9     25
  DEL PEAK 18(10Q23.31) WILD-TYPE     62     43     48     14     40
D46V10, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            13                              62
  CLUS_2                            43                              43
  CLUS_3                            21                              48
  CLUS_4                             9                              14
  CLUS_5                            25                              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 19(11P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P11.2) MUTATED        2      1      6     25
  DEL PEAK 19(11P11.2) WILD-TYPE    106     90     92    170
D47V1, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                            2                            106
  CLUS_2                            1                             90
  CLUS_3                            6                             92
  CLUS_4                           25                            170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P11.2) MUTATED        5     17      5      7
  DEL PEAK 19(11P11.2) WILD-TYPE    156    120    119     63
D47V2, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                            5                            156
  CLUS_2                           17                            120
  CLUS_3                            5                            119
  CLUS_4                            7                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(11P11.2) MUTATED        2      5      1      1     10      4
  DEL PEAK 19(11P11.2) WILD-TYPE    103     46     43     50     48     34
D47V3, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                            2                            103
  CLUS_2                            5                             46
  CLUS_3                            1                             43
  CLUS_4                            1                             50
  CLUS_5                           10                             48
  CLUS_6                            4                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P11.2) MUTATED        2      7      5      9
  DEL PEAK 19(11P11.2) WILD-TYPE     72    106     87     59
D47V4, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                            2                             72
  CLUS_2                            7                            106
  CLUS_3                            5                             87
  CLUS_4                            9                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P11.2) MUTATED        0      6     22      6
  DEL PEAK 19(11P11.2) WILD-TYPE     95    135    125    102
D47V5, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                            0                             95
  CLUS_2                            6                            135
  CLUS_3                           22                            125
  CLUS_4                            6                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P11.2) MUTATED        7     22      5
  DEL PEAK 19(11P11.2) WILD-TYPE    164    183    110
D47V6, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                            7                            164
  CLUS_2                           22                            183
  CLUS_3                            5                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P11.2) MUTATED       23      3      3      5
  DEL PEAK 19(11P11.2) WILD-TYPE    185     68    120     81
D47V7, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                           23                            185
  CLUS_2                            3                             68
  CLUS_3                            3                            120
  CLUS_4                            5                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11P11.2) MUTATED        5      7      2     17      3
  DEL PEAK 19(11P11.2) WILD-TYPE    142     91     57    111     53
D47V8, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                            5                            142
  CLUS_2                            7                             91
  CLUS_3                            2                             57
  CLUS_4                           17                            111
  CLUS_5                            3                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P11.2) MUTATED        0     10      5      5
  DEL PEAK 19(11P11.2) WILD-TYPE     65     81     73     79
D47V9, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                            0                             65
  CLUS_2                           10                             81
  CLUS_3                            5                             73
  CLUS_4                            5                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11P11.2) MUTATED        2     11      3      0      4
  DEL PEAK 19(11P11.2) WILD-TYPE     73     75     66     23     61
D47V10, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                            2                             73
  CLUS_2                           11                             75
  CLUS_3                            3                             66
  CLUS_4                            0                             23
  CLUS_5                            4                             61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 20(11Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11Q22.3) MUTATED        8      3      5     27
  DEL PEAK 20(11Q22.3) WILD-TYPE    100     88     93    168
D48V1, multiclass
        clus
vv       DEL PEAK 20(11Q22.3) MUTATED DEL PEAK 20(11Q22.3) WILD-TYPE
  CLUS_1                            8                            100
  CLUS_2                            3                             88
  CLUS_3                            5                             93
  CLUS_4                           27                            168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11Q22.3) MUTATED       10     14      6     13
  DEL PEAK 20(11Q22.3) WILD-TYPE    151    123    118     57
D48V2, multiclass
        clus
vv       DEL PEAK 20(11Q22.3) MUTATED DEL PEAK 20(11Q22.3) WILD-TYPE
  CLUS_1                           10                            151
  CLUS_2                           14                            123
  CLUS_3                            6                            118
  CLUS_4                           13                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(11Q22.3) MUTATED        7      6      5      4      9      4
  DEL PEAK 20(11Q22.3) WILD-TYPE     98     45     39     47     49     34
D48V3, multiclass
        clus
vv       DEL PEAK 20(11Q22.3) MUTATED DEL PEAK 20(11Q22.3) WILD-TYPE
  CLUS_1                            7                             98
  CLUS_2                            6                             45
  CLUS_3                            5                             39
  CLUS_4                            4                             47
  CLUS_5                            9                             49
  CLUS_6                            4                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11Q22.3) MUTATED        4     15      6     10
  DEL PEAK 20(11Q22.3) WILD-TYPE     70     98     86     58
D48V4, multiclass
        clus
vv       DEL PEAK 20(11Q22.3) MUTATED DEL PEAK 20(11Q22.3) WILD-TYPE
  CLUS_1                            4                             70
  CLUS_2                           15                             98
  CLUS_3                            6                             86
  CLUS_4                           10                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11Q22.3) MUTATED        5      8     18     12
  DEL PEAK 20(11Q22.3) WILD-TYPE     90    133    129     96
D48V5, multiclass
        clus
vv       DEL PEAK 20(11Q22.3) MUTATED DEL PEAK 20(11Q22.3) WILD-TYPE
  CLUS_1                            5                             90
  CLUS_2                            8                            133
  CLUS_3                           18                            129
  CLUS_4                           12                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11Q22.3) MUTATED       15     23      5
  DEL PEAK 20(11Q22.3) WILD-TYPE    156    182    110
D48V6, multiclass
        clus
vv       DEL PEAK 20(11Q22.3) MUTATED DEL PEAK 20(11Q22.3) WILD-TYPE
  CLUS_1                           15                            156
  CLUS_2                           23                            182
  CLUS_3                            5                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11Q22.3) MUTATED       25      4      6      8
  DEL PEAK 20(11Q22.3) WILD-TYPE    183     67    117     78
D48V7, multiclass
        clus
vv       DEL PEAK 20(11Q22.3) MUTATED DEL PEAK 20(11Q22.3) WILD-TYPE
  CLUS_1                           25                            183
  CLUS_2                            4                             67
  CLUS_3                            6                            117
  CLUS_4                            8                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(11Q22.3) MUTATED       11      8      5     15      4
  DEL PEAK 20(11Q22.3) WILD-TYPE    136     90     54    113     52
D48V8, multiclass
        clus
vv       DEL PEAK 20(11Q22.3) MUTATED DEL PEAK 20(11Q22.3) WILD-TYPE
  CLUS_1                           11                            136
  CLUS_2                            8                             90
  CLUS_3                            5                             54
  CLUS_4                           15                            113
  CLUS_5                            4                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11Q22.3) MUTATED        2      8      5      7
  DEL PEAK 20(11Q22.3) WILD-TYPE     63     83     73     77
D48V9, multiclass
        clus
vv       DEL PEAK 20(11Q22.3) MUTATED DEL PEAK 20(11Q22.3) WILD-TYPE
  CLUS_1                            2                             63
  CLUS_2                            8                             83
  CLUS_3                            5                             73
  CLUS_4                            7                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(11Q22.3) MUTATED        2     10      3      1      6
  DEL PEAK 20(11Q22.3) WILD-TYPE     73     76     66     22     59
D48V10, multiclass
        clus
vv       DEL PEAK 20(11Q22.3) MUTATED DEL PEAK 20(11Q22.3) WILD-TYPE
  CLUS_1                            2                             73
  CLUS_2                           10                             76
  CLUS_3                            3                             66
  CLUS_4                            1                             22
  CLUS_5                            6                             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 21(11Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q23.2) MUTATED       13      1      6     28
  DEL PEAK 21(11Q23.2) WILD-TYPE     95     90     92    167
D49V1, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                           13                             95
  CLUS_2                            1                             90
  CLUS_3                            6                             92
  CLUS_4                           28                            167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q23.2) MUTATED       10     16     12     10
  DEL PEAK 21(11Q23.2) WILD-TYPE    151    121    112     60
D49V2, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                           10                            151
  CLUS_2                           16                            121
  CLUS_3                           12                            112
  CLUS_4                           10                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11Q23.2) MUTATED        8      9      4      5     10      5
  DEL PEAK 21(11Q23.2) WILD-TYPE     97     42     40     46     48     33
D49V3, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                            8                             97
  CLUS_2                            9                             42
  CLUS_3                            4                             40
  CLUS_4                            5                             46
  CLUS_5                           10                             48
  CLUS_6                            5                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q23.2) MUTATED        5     15      8     13
  DEL PEAK 21(11Q23.2) WILD-TYPE     69     98     84     55
D49V4, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                            5                             69
  CLUS_2                           15                             98
  CLUS_3                            8                             84
  CLUS_4                           13                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q23.2) MUTATED        7     14     16     11
  DEL PEAK 21(11Q23.2) WILD-TYPE     88    127    131     97
D49V5, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                            7                             88
  CLUS_2                           14                            127
  CLUS_3                           16                            131
  CLUS_4                           11                             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q23.2) MUTATED       17     21     10
  DEL PEAK 21(11Q23.2) WILD-TYPE    154    184    105
D49V6, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                           17                            154
  CLUS_2                           21                            184
  CLUS_3                           10                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q23.2) MUTATED       26      5      7     10
  DEL PEAK 21(11Q23.2) WILD-TYPE    182     66    116     76
D49V7, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                           26                            182
  CLUS_2                            5                             66
  CLUS_3                            7                            116
  CLUS_4                           10                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11Q23.2) MUTATED       10     11      5     17      5
  DEL PEAK 21(11Q23.2) WILD-TYPE    137     87     54    111     51
D49V8, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                           10                            137
  CLUS_2                           11                             87
  CLUS_3                            5                             54
  CLUS_4                           17                            111
  CLUS_5                            5                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q23.2) MUTATED        3     10      8      9
  DEL PEAK 21(11Q23.2) WILD-TYPE     62     81     70     75
D49V9, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                            3                             62
  CLUS_2                           10                             81
  CLUS_3                            8                             70
  CLUS_4                            9                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11Q23.2) MUTATED        4     11      6      2      7
  DEL PEAK 21(11Q23.2) WILD-TYPE     71     75     63     21     58
D49V10, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                            4                             71
  CLUS_2                           11                             75
  CLUS_3                            6                             63
  CLUS_4                            2                             21
  CLUS_5                            7                             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 22(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12P13.1) MUTATED       28      3     22     71
  DEL PEAK 22(12P13.1) WILD-TYPE     80     88     76    124
D50V1, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           28                             80
  CLUS_2                            3                             88
  CLUS_3                           22                             76
  CLUS_4                           71                            124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12P13.1) MUTATED       23     42     39     20
  DEL PEAK 22(12P13.1) WILD-TYPE    138     95     85     50
D50V2, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           23                            138
  CLUS_2                           42                             95
  CLUS_3                           39                             85
  CLUS_4                           20                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(12P13.1) MUTATED       19     16     10     14     19     12
  DEL PEAK 22(12P13.1) WILD-TYPE     86     35     34     37     39     26
D50V3, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           19                             86
  CLUS_2                           16                             35
  CLUS_3                           10                             34
  CLUS_4                           14                             37
  CLUS_5                           19                             39
  CLUS_6                           12                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12P13.1) MUTATED       13     29     21     27
  DEL PEAK 22(12P13.1) WILD-TYPE     61     84     71     41
D50V4, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           13                             61
  CLUS_2                           29                             84
  CLUS_3                           21                             71
  CLUS_4                           27                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12P13.1) MUTATED       10     51     42     21
  DEL PEAK 22(12P13.1) WILD-TYPE     85     90    105     87
D50V5, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           10                             85
  CLUS_2                           51                             90
  CLUS_3                           42                            105
  CLUS_4                           21                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12P13.1) MUTATED       31     52     41
  DEL PEAK 22(12P13.1) WILD-TYPE    140    153     74
D50V6, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           31                            140
  CLUS_2                           52                            153
  CLUS_3                           41                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12P13.1) MUTATED       70      9     19     23
  DEL PEAK 22(12P13.1) WILD-TYPE    138     62    104     63
D50V7, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           70                            138
  CLUS_2                            9                             62
  CLUS_3                           19                            104
  CLUS_4                           23                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(12P13.1) MUTATED       31     10     18     47     15
  DEL PEAK 22(12P13.1) WILD-TYPE    116     88     41     81     41
D50V8, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           31                            116
  CLUS_2                           10                             88
  CLUS_3                           18                             41
  CLUS_4                           47                             81
  CLUS_5                           15                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12P13.1) MUTATED        6     35     19     19
  DEL PEAK 22(12P13.1) WILD-TYPE     59     56     59     65
D50V9, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                            6                             59
  CLUS_2                           35                             56
  CLUS_3                           19                             59
  CLUS_4                           19                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(12P13.1) MUTATED       17     33     15      3     11
  DEL PEAK 22(12P13.1) WILD-TYPE     58     53     54     20     54
D50V10, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           17                             58
  CLUS_2                           33                             53
  CLUS_3                           15                             54
  CLUS_4                            3                             20
  CLUS_5                           11                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 23(12Q24.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12Q24.32) MUTATED        7      3      6     27
  DEL PEAK 23(12Q24.32) WILD-TYPE    101     88     92    168
D51V1, multiclass
        clus
vv       DEL PEAK 23(12Q24.32) MUTATED DEL PEAK 23(12Q24.32) WILD-TYPE
  CLUS_1                             7                             101
  CLUS_2                             3                              88
  CLUS_3                             6                              92
  CLUS_4                            27                             168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12Q24.32) MUTATED        8     15     13      7
  DEL PEAK 23(12Q24.32) WILD-TYPE    153    122    111     63
D51V2, multiclass
        clus
vv       DEL PEAK 23(12Q24.32) MUTATED DEL PEAK 23(12Q24.32) WILD-TYPE
  CLUS_1                             8                             153
  CLUS_2                            15                             122
  CLUS_3                            13                             111
  CLUS_4                             7                              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(12Q24.32) MUTATED        9      6      4      6      7      2
  DEL PEAK 23(12Q24.32) WILD-TYPE     96     45     40     45     51     36
D51V3, multiclass
        clus
vv       DEL PEAK 23(12Q24.32) MUTATED DEL PEAK 23(12Q24.32) WILD-TYPE
  CLUS_1                             9                              96
  CLUS_2                             6                              45
  CLUS_3                             4                              40
  CLUS_4                             6                              45
  CLUS_5                             7                              51
  CLUS_6                             2                              36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12Q24.32) MUTATED        8     10      8      8
  DEL PEAK 23(12Q24.32) WILD-TYPE     66    103     84     60
D51V4, multiclass
        clus
vv       DEL PEAK 23(12Q24.32) MUTATED DEL PEAK 23(12Q24.32) WILD-TYPE
  CLUS_1                             8                              66
  CLUS_2                            10                             103
  CLUS_3                             8                              84
  CLUS_4                             8                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12Q24.32) MUTATED        4     16     17      6
  DEL PEAK 23(12Q24.32) WILD-TYPE     91    125    130    102
D51V5, multiclass
        clus
vv       DEL PEAK 23(12Q24.32) MUTATED DEL PEAK 23(12Q24.32) WILD-TYPE
  CLUS_1                             4                              91
  CLUS_2                            16                             125
  CLUS_3                            17                             130
  CLUS_4                             6                             102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12Q24.32) MUTATED       12     19     12
  DEL PEAK 23(12Q24.32) WILD-TYPE    159    186    103
D51V6, multiclass
        clus
vv       DEL PEAK 23(12Q24.32) MUTATED DEL PEAK 23(12Q24.32) WILD-TYPE
  CLUS_1                            12                             159
  CLUS_2                            19                             186
  CLUS_3                            12                             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12Q24.32) MUTATED       22      2     10      9
  DEL PEAK 23(12Q24.32) WILD-TYPE    186     69    113     77
D51V7, multiclass
        clus
vv       DEL PEAK 23(12Q24.32) MUTATED DEL PEAK 23(12Q24.32) WILD-TYPE
  CLUS_1                            22                             186
  CLUS_2                             2                              69
  CLUS_3                            10                             113
  CLUS_4                             9                              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(12Q24.32) MUTATED       12      7      5     16      3
  DEL PEAK 23(12Q24.32) WILD-TYPE    135     91     54    112     53
D51V8, multiclass
        clus
vv       DEL PEAK 23(12Q24.32) MUTATED DEL PEAK 23(12Q24.32) WILD-TYPE
  CLUS_1                            12                             135
  CLUS_2                             7                              91
  CLUS_3                             5                              54
  CLUS_4                            16                             112
  CLUS_5                             3                              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12Q24.32) MUTATED        2     10      6      6
  DEL PEAK 23(12Q24.32) WILD-TYPE     63     81     72     78
D51V9, multiclass
        clus
vv       DEL PEAK 23(12Q24.32) MUTATED DEL PEAK 23(12Q24.32) WILD-TYPE
  CLUS_1                             2                              63
  CLUS_2                            10                              81
  CLUS_3                             6                              72
  CLUS_4                             6                              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(12Q24.32) MUTATED        6      6      6      1      5
  DEL PEAK 23(12Q24.32) WILD-TYPE     69     80     63     22     60
D51V10, multiclass
        clus
vv       DEL PEAK 23(12Q24.32) MUTATED DEL PEAK 23(12Q24.32) WILD-TYPE
  CLUS_1                             6                              69
  CLUS_2                             6                              80
  CLUS_3                             6                              63
  CLUS_4                             1                              22
  CLUS_5                             5                              60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 24(13Q14.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q14.13) MUTATED       30     10     49    138
  DEL PEAK 24(13Q14.13) WILD-TYPE     78     81     49     57
D52V1, multiclass
        clus
vv       DEL PEAK 24(13Q14.13) MUTATED DEL PEAK 24(13Q14.13) WILD-TYPE
  CLUS_1                            30                              78
  CLUS_2                            10                              81
  CLUS_3                            49                              49
  CLUS_4                           138                              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q14.13) MUTATED       42     83     57     45
  DEL PEAK 24(13Q14.13) WILD-TYPE    119     54     67     25
D52V2, multiclass
        clus
vv       DEL PEAK 24(13Q14.13) MUTATED DEL PEAK 24(13Q14.13) WILD-TYPE
  CLUS_1                            42                             119
  CLUS_2                            83                              54
  CLUS_3                            57                              67
  CLUS_4                            45                              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(13Q14.13) MUTATED       39     25     18     22     35     19
  DEL PEAK 24(13Q14.13) WILD-TYPE     66     26     26     29     23     19
D52V3, multiclass
        clus
vv       DEL PEAK 24(13Q14.13) MUTATED DEL PEAK 24(13Q14.13) WILD-TYPE
  CLUS_1                            39                              66
  CLUS_2                            25                              26
  CLUS_3                            18                              26
  CLUS_4                            22                              29
  CLUS_5                            35                              23
  CLUS_6                            19                              19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q14.13) MUTATED       31     53     34     40
  DEL PEAK 24(13Q14.13) WILD-TYPE     43     60     58     28
D52V4, multiclass
        clus
vv       DEL PEAK 24(13Q14.13) MUTATED DEL PEAK 24(13Q14.13) WILD-TYPE
  CLUS_1                            31                              43
  CLUS_2                            53                              60
  CLUS_3                            34                              58
  CLUS_4                            40                              28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q14.13) MUTATED       31     76     79     41
  DEL PEAK 24(13Q14.13) WILD-TYPE     64     65     68     67
D52V5, multiclass
        clus
vv       DEL PEAK 24(13Q14.13) MUTATED DEL PEAK 24(13Q14.13) WILD-TYPE
  CLUS_1                            31                              64
  CLUS_2                            76                              65
  CLUS_3                            79                              68
  CLUS_4                            41                              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q14.13) MUTATED       56    105     66
  DEL PEAK 24(13Q14.13) WILD-TYPE    115    100     49
D52V6, multiclass
        clus
vv       DEL PEAK 24(13Q14.13) MUTATED DEL PEAK 24(13Q14.13) WILD-TYPE
  CLUS_1                            56                             115
  CLUS_2                           105                             100
  CLUS_3                            66                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q14.13) MUTATED      114     28     40     44
  DEL PEAK 24(13Q14.13) WILD-TYPE     94     43     83     42
D52V7, multiclass
        clus
vv       DEL PEAK 24(13Q14.13) MUTATED DEL PEAK 24(13Q14.13) WILD-TYPE
  CLUS_1                           114                              94
  CLUS_2                            28                              43
  CLUS_3                            40                              83
  CLUS_4                            44                              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(13Q14.13) MUTATED       55     37     25     78     31
  DEL PEAK 24(13Q14.13) WILD-TYPE     92     61     34     50     25
D52V8, multiclass
        clus
vv       DEL PEAK 24(13Q14.13) MUTATED DEL PEAK 24(13Q14.13) WILD-TYPE
  CLUS_1                            55                              92
  CLUS_2                            37                              61
  CLUS_3                            25                              34
  CLUS_4                            78                              50
  CLUS_5                            31                              25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q14.13) MUTATED       17     57     27     51
  DEL PEAK 24(13Q14.13) WILD-TYPE     48     34     51     33
D52V9, multiclass
        clus
vv       DEL PEAK 24(13Q14.13) MUTATED DEL PEAK 24(13Q14.13) WILD-TYPE
  CLUS_1                            17                              48
  CLUS_2                            57                              34
  CLUS_3                            27                              51
  CLUS_4                            51                              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(13Q14.13) MUTATED       25     56     29     10     32
  DEL PEAK 24(13Q14.13) WILD-TYPE     50     30     40     13     33
D52V10, multiclass
        clus
vv       DEL PEAK 24(13Q14.13) MUTATED DEL PEAK 24(13Q14.13) WILD-TYPE
  CLUS_1                            25                              50
  CLUS_2                            56                              30
  CLUS_3                            29                              40
  CLUS_4                            10                              13
  CLUS_5                            32                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 25(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q22.1) MUTATED       20      4     33    119
  DEL PEAK 25(13Q22.1) WILD-TYPE     88     87     65     76
D53V1, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           20                             88
  CLUS_2                            4                             87
  CLUS_3                           33                             65
  CLUS_4                          119                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q22.1) MUTATED       34     59     46     37
  DEL PEAK 25(13Q22.1) WILD-TYPE    127     78     78     33
D53V2, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           34                            127
  CLUS_2                           59                             78
  CLUS_3                           46                             78
  CLUS_4                           37                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(13Q22.1) MUTATED       30     19     15     13     26     21
  DEL PEAK 25(13Q22.1) WILD-TYPE     75     32     29     38     32     17
D53V3, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           30                             75
  CLUS_2                           19                             32
  CLUS_3                           15                             29
  CLUS_4                           13                             38
  CLUS_5                           26                             32
  CLUS_6                           21                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q22.1) MUTATED       19     40     25     40
  DEL PEAK 25(13Q22.1) WILD-TYPE     55     73     67     28
D53V4, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           19                             55
  CLUS_2                           40                             73
  CLUS_3                           25                             67
  CLUS_4                           40                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q22.1) MUTATED       18     63     70     25
  DEL PEAK 25(13Q22.1) WILD-TYPE     77     78     77     83
D53V5, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           18                             77
  CLUS_2                           63                             78
  CLUS_3                           70                             77
  CLUS_4                           25                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q22.1) MUTATED       40     86     50
  DEL PEAK 25(13Q22.1) WILD-TYPE    131    119     65
D53V6, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           40                            131
  CLUS_2                           86                            119
  CLUS_3                           50                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q22.1) MUTATED       87     23     31     33
  DEL PEAK 25(13Q22.1) WILD-TYPE    121     48     92     53
D53V7, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           87                            121
  CLUS_2                           23                             48
  CLUS_3                           31                             92
  CLUS_4                           33                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(13Q22.1) MUTATED       42     27     19     64     22
  DEL PEAK 25(13Q22.1) WILD-TYPE    105     71     40     64     34
D53V8, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           42                            105
  CLUS_2                           27                             71
  CLUS_3                           19                             40
  CLUS_4                           64                             64
  CLUS_5                           22                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q22.1) MUTATED       13     42     24     40
  DEL PEAK 25(13Q22.1) WILD-TYPE     52     49     54     44
D53V9, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           13                             52
  CLUS_2                           42                             49
  CLUS_3                           24                             54
  CLUS_4                           40                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(13Q22.1) MUTATED       16     51     23      6     23
  DEL PEAK 25(13Q22.1) WILD-TYPE     59     35     46     17     42
D53V10, multiclass
        clus
vv       DEL PEAK 25(13Q22.1) MUTATED DEL PEAK 25(13Q22.1) WILD-TYPE
  CLUS_1                           16                             59
  CLUS_2                           51                             35
  CLUS_3                           23                             46
  CLUS_4                            6                             17
  CLUS_5                           23                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 26(15Q21.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q21.3) MUTATED       11      1      4     51
  DEL PEAK 26(15Q21.3) WILD-TYPE     97     90     94    144
D54V1, multiclass
        clus
vv       DEL PEAK 26(15Q21.3) MUTATED DEL PEAK 26(15Q21.3) WILD-TYPE
  CLUS_1                           11                             97
  CLUS_2                            1                             90
  CLUS_3                            4                             94
  CLUS_4                           51                            144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q21.3) MUTATED        5     20     25     17
  DEL PEAK 26(15Q21.3) WILD-TYPE    156    117     99     53
D54V2, multiclass
        clus
vv       DEL PEAK 26(15Q21.3) MUTATED DEL PEAK 26(15Q21.3) WILD-TYPE
  CLUS_1                            5                            156
  CLUS_2                           20                            117
  CLUS_3                           25                             99
  CLUS_4                           17                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(15Q21.3) MUTATED        5     13      7      2      6      9
  DEL PEAK 26(15Q21.3) WILD-TYPE    100     38     37     49     52     29
D54V3, multiclass
        clus
vv       DEL PEAK 26(15Q21.3) MUTATED DEL PEAK 26(15Q21.3) WILD-TYPE
  CLUS_1                            5                            100
  CLUS_2                           13                             38
  CLUS_3                            7                             37
  CLUS_4                            2                             49
  CLUS_5                            6                             52
  CLUS_6                            9                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q21.3) MUTATED        3     18     10     11
  DEL PEAK 26(15Q21.3) WILD-TYPE     71     95     82     57
D54V4, multiclass
        clus
vv       DEL PEAK 26(15Q21.3) MUTATED DEL PEAK 26(15Q21.3) WILD-TYPE
  CLUS_1                            3                             71
  CLUS_2                           18                             95
  CLUS_3                           10                             82
  CLUS_4                           11                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q21.3) MUTATED        7     25     31      4
  DEL PEAK 26(15Q21.3) WILD-TYPE     88    116    116    104
D54V5, multiclass
        clus
vv       DEL PEAK 26(15Q21.3) MUTATED DEL PEAK 26(15Q21.3) WILD-TYPE
  CLUS_1                            7                             88
  CLUS_2                           25                            116
  CLUS_3                           31                            116
  CLUS_4                            4                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q21.3) MUTATED        7     37     23
  DEL PEAK 26(15Q21.3) WILD-TYPE    164    168     92
D54V6, multiclass
        clus
vv       DEL PEAK 26(15Q21.3) MUTATED DEL PEAK 26(15Q21.3) WILD-TYPE
  CLUS_1                            7                            164
  CLUS_2                           37                            168
  CLUS_3                           23                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q21.3) MUTATED       39      8      4     14
  DEL PEAK 26(15Q21.3) WILD-TYPE    169     63    119     72
D54V7, multiclass
        clus
vv       DEL PEAK 26(15Q21.3) MUTATED DEL PEAK 26(15Q21.3) WILD-TYPE
  CLUS_1                           39                            169
  CLUS_2                            8                             63
  CLUS_3                            4                            119
  CLUS_4                           14                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(15Q21.3) MUTATED        7      8     10     28     12
  DEL PEAK 26(15Q21.3) WILD-TYPE    140     90     49    100     44
D54V8, multiclass
        clus
vv       DEL PEAK 26(15Q21.3) MUTATED DEL PEAK 26(15Q21.3) WILD-TYPE
  CLUS_1                            7                            140
  CLUS_2                            8                             90
  CLUS_3                           10                             49
  CLUS_4                           28                            100
  CLUS_5                           12                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q21.3) MUTATED        1     20     10     13
  DEL PEAK 26(15Q21.3) WILD-TYPE     64     71     68     71
D54V9, multiclass
        clus
vv       DEL PEAK 26(15Q21.3) MUTATED DEL PEAK 26(15Q21.3) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                           20                             71
  CLUS_3                           10                             68
  CLUS_4                           13                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(15Q21.3) MUTATED        2     24      9      1      8
  DEL PEAK 26(15Q21.3) WILD-TYPE     73     62     60     22     57
D54V10, multiclass
        clus
vv       DEL PEAK 26(15Q21.3) MUTATED DEL PEAK 26(15Q21.3) WILD-TYPE
  CLUS_1                            2                             73
  CLUS_2                           24                             62
  CLUS_3                            9                             60
  CLUS_4                            1                             22
  CLUS_5                            8                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 27(16Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(16Q22.3) MUTATED       60      3     14    114
  DEL PEAK 27(16Q22.3) WILD-TYPE     48     88     84     81
D55V1, multiclass
        clus
vv       DEL PEAK 27(16Q22.3) MUTATED DEL PEAK 27(16Q22.3) WILD-TYPE
  CLUS_1                           60                             48
  CLUS_2                            3                             88
  CLUS_3                           14                             84
  CLUS_4                          114                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(16Q22.3) MUTATED       31     53     63     44
  DEL PEAK 27(16Q22.3) WILD-TYPE    130     84     61     26
D55V2, multiclass
        clus
vv       DEL PEAK 27(16Q22.3) MUTATED DEL PEAK 27(16Q22.3) WILD-TYPE
  CLUS_1                           31                            130
  CLUS_2                           53                             84
  CLUS_3                           63                             61
  CLUS_4                           44                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(16Q22.3) MUTATED       34     25     16     16     21     21
  DEL PEAK 27(16Q22.3) WILD-TYPE     71     26     28     35     37     17
D55V3, multiclass
        clus
vv       DEL PEAK 27(16Q22.3) MUTATED DEL PEAK 27(16Q22.3) WILD-TYPE
  CLUS_1                           34                             71
  CLUS_2                           25                             26
  CLUS_3                           16                             28
  CLUS_4                           16                             35
  CLUS_5                           21                             37
  CLUS_6                           21                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(16Q22.3) MUTATED       27     40     33     33
  DEL PEAK 27(16Q22.3) WILD-TYPE     47     73     59     35
D55V4, multiclass
        clus
vv       DEL PEAK 27(16Q22.3) MUTATED DEL PEAK 27(16Q22.3) WILD-TYPE
  CLUS_1                           27                             47
  CLUS_2                           40                             73
  CLUS_3                           33                             59
  CLUS_4                           33                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(16Q22.3) MUTATED       16     81     66     28
  DEL PEAK 27(16Q22.3) WILD-TYPE     79     60     81     80
D55V5, multiclass
        clus
vv       DEL PEAK 27(16Q22.3) MUTATED DEL PEAK 27(16Q22.3) WILD-TYPE
  CLUS_1                           16                             79
  CLUS_2                           81                             60
  CLUS_3                           66                             81
  CLUS_4                           28                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q22.3) MUTATED       51     77     63
  DEL PEAK 27(16Q22.3) WILD-TYPE    120    128     52
D55V6, multiclass
        clus
vv       DEL PEAK 27(16Q22.3) MUTATED DEL PEAK 27(16Q22.3) WILD-TYPE
  CLUS_1                           51                            120
  CLUS_2                           77                            128
  CLUS_3                           63                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(16Q22.3) MUTATED      111     13     33     32
  DEL PEAK 27(16Q22.3) WILD-TYPE     97     58     90     54
D55V7, multiclass
        clus
vv       DEL PEAK 27(16Q22.3) MUTATED DEL PEAK 27(16Q22.3) WILD-TYPE
  CLUS_1                          111                             97
  CLUS_2                           13                             58
  CLUS_3                           33                             90
  CLUS_4                           32                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(16Q22.3) MUTATED       44     22     28     78     17
  DEL PEAK 27(16Q22.3) WILD-TYPE    103     76     31     50     39
D55V8, multiclass
        clus
vv       DEL PEAK 27(16Q22.3) MUTATED DEL PEAK 27(16Q22.3) WILD-TYPE
  CLUS_1                           44                            103
  CLUS_2                           22                             76
  CLUS_3                           28                             31
  CLUS_4                           78                             50
  CLUS_5                           17                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(16Q22.3) MUTATED       11     51     22     30
  DEL PEAK 27(16Q22.3) WILD-TYPE     54     40     56     54
D55V9, multiclass
        clus
vv       DEL PEAK 27(16Q22.3) MUTATED DEL PEAK 27(16Q22.3) WILD-TYPE
  CLUS_1                           11                             54
  CLUS_2                           51                             40
  CLUS_3                           22                             56
  CLUS_4                           30                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(16Q22.3) MUTATED       23     43     21      4     23
  DEL PEAK 27(16Q22.3) WILD-TYPE     52     43     48     19     42
D55V10, multiclass
        clus
vv       DEL PEAK 27(16Q22.3) MUTATED DEL PEAK 27(16Q22.3) WILD-TYPE
  CLUS_1                           23                             52
  CLUS_2                           43                             43
  CLUS_3                           21                             48
  CLUS_4                            4                             19
  CLUS_5                           23                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 28(16Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16Q24.1) MUTATED       71      4     13    125
  DEL PEAK 28(16Q24.1) WILD-TYPE     37     87     85     70
D56V1, multiclass
        clus
vv       DEL PEAK 28(16Q24.1) MUTATED DEL PEAK 28(16Q24.1) WILD-TYPE
  CLUS_1                           71                             37
  CLUS_2                            4                             87
  CLUS_3                           13                             85
  CLUS_4                          125                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16Q24.1) MUTATED       39     54     67     53
  DEL PEAK 28(16Q24.1) WILD-TYPE    122     83     57     17
D56V2, multiclass
        clus
vv       DEL PEAK 28(16Q24.1) MUTATED DEL PEAK 28(16Q24.1) WILD-TYPE
  CLUS_1                           39                            122
  CLUS_2                           54                             83
  CLUS_3                           67                             57
  CLUS_4                           53                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(16Q24.1) MUTATED       39     25     20     22     25     23
  DEL PEAK 28(16Q24.1) WILD-TYPE     66     26     24     29     33     15
D56V3, multiclass
        clus
vv       DEL PEAK 28(16Q24.1) MUTATED DEL PEAK 28(16Q24.1) WILD-TYPE
  CLUS_1                           39                             66
  CLUS_2                           25                             26
  CLUS_3                           20                             24
  CLUS_4                           22                             29
  CLUS_5                           25                             33
  CLUS_6                           23                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16Q24.1) MUTATED       28     52     36     38
  DEL PEAK 28(16Q24.1) WILD-TYPE     46     61     56     30
D56V4, multiclass
        clus
vv       DEL PEAK 28(16Q24.1) MUTATED DEL PEAK 28(16Q24.1) WILD-TYPE
  CLUS_1                           28                             46
  CLUS_2                           52                             61
  CLUS_3                           36                             56
  CLUS_4                           38                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16Q24.1) MUTATED       18     88     72     35
  DEL PEAK 28(16Q24.1) WILD-TYPE     77     53     75     73
D56V5, multiclass
        clus
vv       DEL PEAK 28(16Q24.1) MUTATED DEL PEAK 28(16Q24.1) WILD-TYPE
  CLUS_1                           18                             77
  CLUS_2                           88                             53
  CLUS_3                           72                             75
  CLUS_4                           35                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q24.1) MUTATED       63     86     64
  DEL PEAK 28(16Q24.1) WILD-TYPE    108    119     51
D56V6, multiclass
        clus
vv       DEL PEAK 28(16Q24.1) MUTATED DEL PEAK 28(16Q24.1) WILD-TYPE
  CLUS_1                           63                            108
  CLUS_2                           86                            119
  CLUS_3                           64                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16Q24.1) MUTATED      116     17     42     35
  DEL PEAK 28(16Q24.1) WILD-TYPE     92     54     81     51
D56V7, multiclass
        clus
vv       DEL PEAK 28(16Q24.1) MUTATED DEL PEAK 28(16Q24.1) WILD-TYPE
  CLUS_1                          116                             92
  CLUS_2                           17                             54
  CLUS_3                           42                             81
  CLUS_4                           35                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(16Q24.1) MUTATED       50     25     32     86     17
  DEL PEAK 28(16Q24.1) WILD-TYPE     97     73     27     42     39
D56V8, multiclass
        clus
vv       DEL PEAK 28(16Q24.1) MUTATED DEL PEAK 28(16Q24.1) WILD-TYPE
  CLUS_1                           50                             97
  CLUS_2                           25                             73
  CLUS_3                           32                             27
  CLUS_4                           86                             42
  CLUS_5                           17                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16Q24.1) MUTATED       17     50     29     33
  DEL PEAK 28(16Q24.1) WILD-TYPE     48     41     49     51
D56V9, multiclass
        clus
vv       DEL PEAK 28(16Q24.1) MUTATED DEL PEAK 28(16Q24.1) WILD-TYPE
  CLUS_1                           17                             48
  CLUS_2                           50                             41
  CLUS_3                           29                             49
  CLUS_4                           33                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(16Q24.1) MUTATED       24     43     26      8     28
  DEL PEAK 28(16Q24.1) WILD-TYPE     51     43     43     15     37
D56V10, multiclass
        clus
vv       DEL PEAK 28(16Q24.1) MUTATED DEL PEAK 28(16Q24.1) WILD-TYPE
  CLUS_1                           24                             51
  CLUS_2                           43                             43
  CLUS_3                           26                             43
  CLUS_4                            8                             15
  CLUS_5                           28                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 29(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(17P13.1) MUTATED       45      4     12    102
  DEL PEAK 29(17P13.1) WILD-TYPE     63     87     86     93
D57V1, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                           45                             63
  CLUS_2                            4                             87
  CLUS_3                           12                             86
  CLUS_4                          102                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(17P13.1) MUTATED       30     24     67     42
  DEL PEAK 29(17P13.1) WILD-TYPE    131    113     57     28
D57V2, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                           30                            131
  CLUS_2                           24                            113
  CLUS_3                           67                             57
  CLUS_4                           42                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(17P13.1) MUTATED       29     16     11     21     16     21
  DEL PEAK 29(17P13.1) WILD-TYPE     76     35     33     30     42     17
D57V3, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                           29                             76
  CLUS_2                           16                             35
  CLUS_3                           11                             33
  CLUS_4                           21                             30
  CLUS_5                           16                             42
  CLUS_6                           21                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(17P13.1) MUTATED       22     33     26     33
  DEL PEAK 29(17P13.1) WILD-TYPE     52     80     66     35
D57V4, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                           22                             52
  CLUS_2                           33                             80
  CLUS_3                           26                             66
  CLUS_4                           33                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(17P13.1) MUTATED       13     76     50     24
  DEL PEAK 29(17P13.1) WILD-TYPE     82     65     97     84
D57V5, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                           13                             82
  CLUS_2                           76                             65
  CLUS_3                           50                             97
  CLUS_4                           24                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17P13.1) MUTATED       38     54     71
  DEL PEAK 29(17P13.1) WILD-TYPE    133    151     44
D57V6, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                           38                            133
  CLUS_2                           54                            151
  CLUS_3                           71                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(17P13.1) MUTATED       91     14     31     25
  DEL PEAK 29(17P13.1) WILD-TYPE    117     57     92     61
D57V7, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                           91                            117
  CLUS_2                           14                             57
  CLUS_3                           31                             92
  CLUS_4                           25                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(17P13.1) MUTATED       36     15     34     60     16
  DEL PEAK 29(17P13.1) WILD-TYPE    111     83     25     68     40
D57V8, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                           36                            111
  CLUS_2                           15                             83
  CLUS_3                           34                             25
  CLUS_4                           60                             68
  CLUS_5                           16                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(17P13.1) MUTATED       15     44     22     32
  DEL PEAK 29(17P13.1) WILD-TYPE     50     47     56     52
D57V9, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                           15                             50
  CLUS_2                           44                             47
  CLUS_3                           22                             56
  CLUS_4                           32                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(17P13.1) MUTATED       20     46     19      8     20
  DEL PEAK 29(17P13.1) WILD-TYPE     55     40     50     15     45
D57V10, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                           20                             55
  CLUS_2                           46                             40
  CLUS_3                           19                             50
  CLUS_4                            8                             15
  CLUS_5                           20                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 30(17Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(17Q21.31) MUTATED       27     10     12     47
  DEL PEAK 30(17Q21.31) WILD-TYPE     81     81     86    148
D58V1, multiclass
        clus
vv       DEL PEAK 30(17Q21.31) MUTATED DEL PEAK 30(17Q21.31) WILD-TYPE
  CLUS_1                            27                              81
  CLUS_2                            10                              81
  CLUS_3                            12                              86
  CLUS_4                            47                             148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(17Q21.31) MUTATED       24     13     43     16
  DEL PEAK 30(17Q21.31) WILD-TYPE    137    124     81     54
D58V2, multiclass
        clus
vv       DEL PEAK 30(17Q21.31) MUTATED DEL PEAK 30(17Q21.31) WILD-TYPE
  CLUS_1                            24                             137
  CLUS_2                            13                             124
  CLUS_3                            43                              81
  CLUS_4                            16                              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(17Q21.31) MUTATED       22      9     12     10      5     11
  DEL PEAK 30(17Q21.31) WILD-TYPE     83     42     32     41     53     27
D58V3, multiclass
        clus
vv       DEL PEAK 30(17Q21.31) MUTATED DEL PEAK 30(17Q21.31) WILD-TYPE
  CLUS_1                            22                              83
  CLUS_2                             9                              42
  CLUS_3                            12                              32
  CLUS_4                            10                              41
  CLUS_5                             5                              53
  CLUS_6                            11                              27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(17Q21.31) MUTATED       20     28     12      9
  DEL PEAK 30(17Q21.31) WILD-TYPE     54     85     80     59
D58V4, multiclass
        clus
vv       DEL PEAK 30(17Q21.31) MUTATED DEL PEAK 30(17Q21.31) WILD-TYPE
  CLUS_1                            20                              54
  CLUS_2                            28                              85
  CLUS_3                            12                              80
  CLUS_4                             9                              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(17Q21.31) MUTATED       13     48     18     17
  DEL PEAK 30(17Q21.31) WILD-TYPE     82     93    129     91
D58V5, multiclass
        clus
vv       DEL PEAK 30(17Q21.31) MUTATED DEL PEAK 30(17Q21.31) WILD-TYPE
  CLUS_1                            13                              82
  CLUS_2                            48                              93
  CLUS_3                            18                             129
  CLUS_4                            17                              91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17Q21.31) MUTATED       33     26     37
  DEL PEAK 30(17Q21.31) WILD-TYPE    138    179     78
D58V6, multiclass
        clus
vv       DEL PEAK 30(17Q21.31) MUTATED DEL PEAK 30(17Q21.31) WILD-TYPE
  CLUS_1                            33                             138
  CLUS_2                            26                             179
  CLUS_3                            37                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(17Q21.31) MUTATED       45     11     16     22
  DEL PEAK 30(17Q21.31) WILD-TYPE    163     60    107     64
D58V7, multiclass
        clus
vv       DEL PEAK 30(17Q21.31) MUTATED DEL PEAK 30(17Q21.31) WILD-TYPE
  CLUS_1                            45                             163
  CLUS_2                            11                              60
  CLUS_3                            16                             107
  CLUS_4                            22                              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(17Q21.31) MUTATED       23     14     19     25     13
  DEL PEAK 30(17Q21.31) WILD-TYPE    124     84     40    103     43
D58V8, multiclass
        clus
vv       DEL PEAK 30(17Q21.31) MUTATED DEL PEAK 30(17Q21.31) WILD-TYPE
  CLUS_1                            23                             124
  CLUS_2                            14                              84
  CLUS_3                            19                              40
  CLUS_4                            25                             103
  CLUS_5                            13                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(17Q21.31) MUTATED        7     20     14     20
  DEL PEAK 30(17Q21.31) WILD-TYPE     58     71     64     64
D58V9, multiclass
        clus
vv       DEL PEAK 30(17Q21.31) MUTATED DEL PEAK 30(17Q21.31) WILD-TYPE
  CLUS_1                             7                              58
  CLUS_2                            20                              71
  CLUS_3                            14                              64
  CLUS_4                            20                              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(17Q21.31) MUTATED       13     14     15      5     14
  DEL PEAK 30(17Q21.31) WILD-TYPE     62     72     54     18     51
D58V10, multiclass
        clus
vv       DEL PEAK 30(17Q21.31) MUTATED DEL PEAK 30(17Q21.31) WILD-TYPE
  CLUS_1                            13                              62
  CLUS_2                            14                              72
  CLUS_3                            15                              54
  CLUS_4                             5                              18
  CLUS_5                            14                              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 31(18Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(18Q21.31) MUTATED       28      3      8     92
  DEL PEAK 31(18Q21.31) WILD-TYPE     80     88     90    103
D59V1, multiclass
        clus
vv       DEL PEAK 31(18Q21.31) MUTATED DEL PEAK 31(18Q21.31) WILD-TYPE
  CLUS_1                            28                              80
  CLUS_2                             3                              88
  CLUS_3                             8                              90
  CLUS_4                            92                             103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(18Q21.31) MUTATED       23     42     44     22
  DEL PEAK 31(18Q21.31) WILD-TYPE    138     95     80     48
D59V2, multiclass
        clus
vv       DEL PEAK 31(18Q21.31) MUTATED DEL PEAK 31(18Q21.31) WILD-TYPE
  CLUS_1                            23                             138
  CLUS_2                            42                              95
  CLUS_3                            44                              80
  CLUS_4                            22                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(18Q21.31) MUTATED       20     17      8     12     18     12
  DEL PEAK 31(18Q21.31) WILD-TYPE     85     34     36     39     40     26
D59V3, multiclass
        clus
vv       DEL PEAK 31(18Q21.31) MUTATED DEL PEAK 31(18Q21.31) WILD-TYPE
  CLUS_1                            20                              85
  CLUS_2                            17                              34
  CLUS_3                             8                              36
  CLUS_4                            12                              39
  CLUS_5                            18                              40
  CLUS_6                            12                              26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(18Q21.31) MUTATED       14     28     16     29
  DEL PEAK 31(18Q21.31) WILD-TYPE     60     85     76     39
D59V4, multiclass
        clus
vv       DEL PEAK 31(18Q21.31) MUTATED DEL PEAK 31(18Q21.31) WILD-TYPE
  CLUS_1                            14                              60
  CLUS_2                            28                              85
  CLUS_3                            16                              76
  CLUS_4                            29                              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(18Q21.31) MUTATED       18     40     57     16
  DEL PEAK 31(18Q21.31) WILD-TYPE     77    101     90     92
D59V5, multiclass
        clus
vv       DEL PEAK 31(18Q21.31) MUTATED DEL PEAK 31(18Q21.31) WILD-TYPE
  CLUS_1                            18                              77
  CLUS_2                            40                             101
  CLUS_3                            57                              90
  CLUS_4                            16                              92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(18Q21.31) MUTATED       32     63     36
  DEL PEAK 31(18Q21.31) WILD-TYPE    139    142     79
D59V6, multiclass
        clus
vv       DEL PEAK 31(18Q21.31) MUTATED DEL PEAK 31(18Q21.31) WILD-TYPE
  CLUS_1                            32                             139
  CLUS_2                            63                             142
  CLUS_3                            36                              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(18Q21.31) MUTATED       74     14     18     23
  DEL PEAK 31(18Q21.31) WILD-TYPE    134     57    105     63
D59V7, multiclass
        clus
vv       DEL PEAK 31(18Q21.31) MUTATED DEL PEAK 31(18Q21.31) WILD-TYPE
  CLUS_1                            74                             134
  CLUS_2                            14                              57
  CLUS_3                            18                             105
  CLUS_4                            23                              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(18Q21.31) MUTATED       29     20     20     45     15
  DEL PEAK 31(18Q21.31) WILD-TYPE    118     78     39     83     41
D59V8, multiclass
        clus
vv       DEL PEAK 31(18Q21.31) MUTATED DEL PEAK 31(18Q21.31) WILD-TYPE
  CLUS_1                            29                             118
  CLUS_2                            20                              78
  CLUS_3                            20                              39
  CLUS_4                            45                              83
  CLUS_5                            15                              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(18Q21.31) MUTATED        8     35     19     24
  DEL PEAK 31(18Q21.31) WILD-TYPE     57     56     59     60
D59V9, multiclass
        clus
vv       DEL PEAK 31(18Q21.31) MUTATED DEL PEAK 31(18Q21.31) WILD-TYPE
  CLUS_1                             8                              57
  CLUS_2                            35                              56
  CLUS_3                            19                              59
  CLUS_4                            24                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(18Q21.31) MUTATED       11     40     16      3     16
  DEL PEAK 31(18Q21.31) WILD-TYPE     64     46     53     20     49
D59V10, multiclass
        clus
vv       DEL PEAK 31(18Q21.31) MUTATED DEL PEAK 31(18Q21.31) WILD-TYPE
  CLUS_1                            11                              64
  CLUS_2                            40                              46
  CLUS_3                            16                              53
  CLUS_4                             3                              20
  CLUS_5                            16                              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 32(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(18Q23) MUTATED       32      4      6     95
  DEL PEAK 32(18Q23) WILD-TYPE     76     87     92    100
D60V1, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         32                           76
  CLUS_2                          4                           87
  CLUS_3                          6                           92
  CLUS_4                         95                          100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(18Q23) MUTATED       27     38     46     26
  DEL PEAK 32(18Q23) WILD-TYPE    134     99     78     44
D60V2, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         27                          134
  CLUS_2                         38                           99
  CLUS_3                         46                           78
  CLUS_4                         26                           44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(18Q23) MUTATED       25     18      9     15     16     11
  DEL PEAK 32(18Q23) WILD-TYPE     80     33     35     36     42     27
D60V3, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         25                           80
  CLUS_2                         18                           33
  CLUS_3                          9                           35
  CLUS_4                         15                           36
  CLUS_5                         16                           42
  CLUS_6                         11                           27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(18Q23) MUTATED       18     31     18     27
  DEL PEAK 32(18Q23) WILD-TYPE     56     82     74     41
D60V4, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         18                           56
  CLUS_2                         31                           82
  CLUS_3                         18                           74
  CLUS_4                         27                           41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(18Q23) MUTATED       18     45     55     19
  DEL PEAK 32(18Q23) WILD-TYPE     77     96     92     89
D60V5, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         18                           77
  CLUS_2                         45                           96
  CLUS_3                         55                           92
  CLUS_4                         19                           89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED       37     60     40
  DEL PEAK 32(18Q23) WILD-TYPE    134    145     75
D60V6, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         37                          134
  CLUS_2                         60                          145
  CLUS_3                         40                           75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(18Q23) MUTATED       71     14     23     27
  DEL PEAK 32(18Q23) WILD-TYPE    137     57    100     59
D60V7, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         71                          137
  CLUS_2                         14                           57
  CLUS_3                         23                          100
  CLUS_4                         27                           59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(18Q23) MUTATED       29     21     22     46     17
  DEL PEAK 32(18Q23) WILD-TYPE    118     77     37     82     39
D60V8, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         29                          118
  CLUS_2                         21                           77
  CLUS_3                         22                           37
  CLUS_4                         46                           82
  CLUS_5                         17                           39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(18Q23) MUTATED        9     36     18     28
  DEL PEAK 32(18Q23) WILD-TYPE     56     55     60     56
D60V9, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                          9                           56
  CLUS_2                         36                           55
  CLUS_3                         18                           60
  CLUS_4                         28                           56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(18Q23) MUTATED       12     38     17      4     20
  DEL PEAK 32(18Q23) WILD-TYPE     63     48     52     19     45
D60V10, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         12                           63
  CLUS_2                         38                           48
  CLUS_3                         17                           52
  CLUS_4                          4                           19
  CLUS_5                         20                           45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 33(19Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19Q13.2) MUTATED        6      0      7     39
  DEL PEAK 33(19Q13.2) WILD-TYPE    102     91     91    156
D61V1, multiclass
        clus
vv       DEL PEAK 33(19Q13.2) MUTATED DEL PEAK 33(19Q13.2) WILD-TYPE
  CLUS_1                            6                            102
  CLUS_2                            0                             91
  CLUS_3                            7                             91
  CLUS_4                           39                            156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19Q13.2) MUTATED        7     14     21     10
  DEL PEAK 33(19Q13.2) WILD-TYPE    154    123    103     60
D61V2, multiclass
        clus
vv       DEL PEAK 33(19Q13.2) MUTATED DEL PEAK 33(19Q13.2) WILD-TYPE
  CLUS_1                            7                            154
  CLUS_2                           14                            123
  CLUS_3                           21                            103
  CLUS_4                           10                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(19Q13.2) MUTATED       10      7      2      3      5      5
  DEL PEAK 33(19Q13.2) WILD-TYPE     95     44     42     48     53     33
D61V3, multiclass
        clus
vv       DEL PEAK 33(19Q13.2) MUTATED DEL PEAK 33(19Q13.2) WILD-TYPE
  CLUS_1                           10                             95
  CLUS_2                            7                             44
  CLUS_3                            2                             42
  CLUS_4                            3                             48
  CLUS_5                            5                             53
  CLUS_6                            5                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19Q13.2) MUTATED        6      9      7     10
  DEL PEAK 33(19Q13.2) WILD-TYPE     68    104     85     58
D61V4, multiclass
        clus
vv       DEL PEAK 33(19Q13.2) MUTATED DEL PEAK 33(19Q13.2) WILD-TYPE
  CLUS_1                            6                             68
  CLUS_2                            9                            104
  CLUS_3                            7                             85
  CLUS_4                           10                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19Q13.2) MUTATED        4     15     27      6
  DEL PEAK 33(19Q13.2) WILD-TYPE     91    126    120    102
D61V5, multiclass
        clus
vv       DEL PEAK 33(19Q13.2) MUTATED DEL PEAK 33(19Q13.2) WILD-TYPE
  CLUS_1                            4                             91
  CLUS_2                           15                            126
  CLUS_3                           27                            120
  CLUS_4                            6                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19Q13.2) MUTATED       11     29     12
  DEL PEAK 33(19Q13.2) WILD-TYPE    160    176    103
D61V6, multiclass
        clus
vv       DEL PEAK 33(19Q13.2) MUTATED DEL PEAK 33(19Q13.2) WILD-TYPE
  CLUS_1                           11                            160
  CLUS_2                           29                            176
  CLUS_3                           12                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19Q13.2) MUTATED       34      4      3      9
  DEL PEAK 33(19Q13.2) WILD-TYPE    174     67    120     77
D61V7, multiclass
        clus
vv       DEL PEAK 33(19Q13.2) MUTATED DEL PEAK 33(19Q13.2) WILD-TYPE
  CLUS_1                           34                            174
  CLUS_2                            4                             67
  CLUS_3                            3                            120
  CLUS_4                            9                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(19Q13.2) MUTATED        6      7     13     19      5
  DEL PEAK 33(19Q13.2) WILD-TYPE    141     91     46    109     51
D61V8, multiclass
        clus
vv       DEL PEAK 33(19Q13.2) MUTATED DEL PEAK 33(19Q13.2) WILD-TYPE
  CLUS_1                            6                            141
  CLUS_2                            7                             91
  CLUS_3                           13                             46
  CLUS_4                           19                            109
  CLUS_5                            5                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19Q13.2) MUTATED        3     14      5     11
  DEL PEAK 33(19Q13.2) WILD-TYPE     62     77     73     73
D61V9, multiclass
        clus
vv       DEL PEAK 33(19Q13.2) MUTATED DEL PEAK 33(19Q13.2) WILD-TYPE
  CLUS_1                            3                             62
  CLUS_2                           14                             77
  CLUS_3                            5                             73
  CLUS_4                           11                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(19Q13.2) MUTATED        6     15      5      2      5
  DEL PEAK 33(19Q13.2) WILD-TYPE     69     71     64     21     60
D61V10, multiclass
        clus
vv       DEL PEAK 33(19Q13.2) MUTATED DEL PEAK 33(19Q13.2) WILD-TYPE
  CLUS_1                            6                             69
  CLUS_2                           15                             71
  CLUS_3                            5                             64
  CLUS_4                            2                             21
  CLUS_5                            5                             60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 34(21Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(21Q22.2) MUTATED       13      5     10     24
  DEL PEAK 34(21Q22.2) WILD-TYPE     95     86     88    171
D62V1, multiclass
        clus
vv       DEL PEAK 34(21Q22.2) MUTATED DEL PEAK 34(21Q22.2) WILD-TYPE
  CLUS_1                           13                             95
  CLUS_2                            5                             86
  CLUS_3                           10                             88
  CLUS_4                           24                            171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(21Q22.2) MUTATED       14      6     23      9
  DEL PEAK 34(21Q22.2) WILD-TYPE    147    131    101     61
D62V2, multiclass
        clus
vv       DEL PEAK 34(21Q22.2) MUTATED DEL PEAK 34(21Q22.2) WILD-TYPE
  CLUS_1                           14                            147
  CLUS_2                            6                            131
  CLUS_3                           23                            101
  CLUS_4                            9                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(21Q22.2) MUTATED       11      7      2      9      3      6
  DEL PEAK 34(21Q22.2) WILD-TYPE     94     44     42     42     55     32
D62V3, multiclass
        clus
vv       DEL PEAK 34(21Q22.2) MUTATED DEL PEAK 34(21Q22.2) WILD-TYPE
  CLUS_1                           11                             94
  CLUS_2                            7                             44
  CLUS_3                            2                             42
  CLUS_4                            9                             42
  CLUS_5                            3                             55
  CLUS_6                            6                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(21Q22.2) MUTATED        9     12      8      9
  DEL PEAK 34(21Q22.2) WILD-TYPE     65    101     84     59
D62V4, multiclass
        clus
vv       DEL PEAK 34(21Q22.2) MUTATED DEL PEAK 34(21Q22.2) WILD-TYPE
  CLUS_1                            9                             65
  CLUS_2                           12                            101
  CLUS_3                            8                             84
  CLUS_4                            9                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(21Q22.2) MUTATED        7     27     12      6
  DEL PEAK 34(21Q22.2) WILD-TYPE     88    114    135    102
D62V5, multiclass
        clus
vv       DEL PEAK 34(21Q22.2) MUTATED DEL PEAK 34(21Q22.2) WILD-TYPE
  CLUS_1                            7                             88
  CLUS_2                           27                            114
  CLUS_3                           12                            135
  CLUS_4                            6                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(21Q22.2) MUTATED       12     15     25
  DEL PEAK 34(21Q22.2) WILD-TYPE    159    190     90
D62V6, multiclass
        clus
vv       DEL PEAK 34(21Q22.2) MUTATED DEL PEAK 34(21Q22.2) WILD-TYPE
  CLUS_1                           12                            159
  CLUS_2                           15                            190
  CLUS_3                           25                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(21Q22.2) MUTATED       30      3      9      9
  DEL PEAK 34(21Q22.2) WILD-TYPE    178     68    114     77
D62V7, multiclass
        clus
vv       DEL PEAK 34(21Q22.2) MUTATED DEL PEAK 34(21Q22.2) WILD-TYPE
  CLUS_1                           30                            178
  CLUS_2                            3                             68
  CLUS_3                            9                            114
  CLUS_4                            9                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(21Q22.2) MUTATED       11      7     13     15      5
  DEL PEAK 34(21Q22.2) WILD-TYPE    136     91     46    113     51
D62V8, multiclass
        clus
vv       DEL PEAK 34(21Q22.2) MUTATED DEL PEAK 34(21Q22.2) WILD-TYPE
  CLUS_1                           11                            136
  CLUS_2                            7                             91
  CLUS_3                           13                             46
  CLUS_4                           15                            113
  CLUS_5                            5                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(21Q22.2) MUTATED        6     14      8      9
  DEL PEAK 34(21Q22.2) WILD-TYPE     59     77     70     75
D62V9, multiclass
        clus
vv       DEL PEAK 34(21Q22.2) MUTATED DEL PEAK 34(21Q22.2) WILD-TYPE
  CLUS_1                            6                             59
  CLUS_2                           14                             77
  CLUS_3                            8                             70
  CLUS_4                            9                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(21Q22.2) MUTATED        5     15      7      3      7
  DEL PEAK 34(21Q22.2) WILD-TYPE     70     71     62     20     58
D62V10, multiclass
        clus
vv       DEL PEAK 34(21Q22.2) MUTATED DEL PEAK 34(21Q22.2) WILD-TYPE
  CLUS_1                            5                             70
  CLUS_2                           15                             71
  CLUS_3                            7                             62
  CLUS_4                            3                             20
  CLUS_5                            7                             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 35(21Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(21Q22.3) MUTATED       50     15     26     55
  DEL PEAK 35(21Q22.3) WILD-TYPE     58     76     72    140
D63V1, multiclass
        clus
vv       DEL PEAK 35(21Q22.3) MUTATED DEL PEAK 35(21Q22.3) WILD-TYPE
  CLUS_1                           50                             58
  CLUS_2                           15                             76
  CLUS_3                           26                             72
  CLUS_4                           55                            140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(21Q22.3) MUTATED       37      8     74     27
  DEL PEAK 35(21Q22.3) WILD-TYPE    124    129     50     43
D63V2, multiclass
        clus
vv       DEL PEAK 35(21Q22.3) MUTATED DEL PEAK 35(21Q22.3) WILD-TYPE
  CLUS_1                           37                            124
  CLUS_2                            8                            129
  CLUS_3                           74                             50
  CLUS_4                           27                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(21Q22.3) MUTATED       27     17     13     23     10     17
  DEL PEAK 35(21Q22.3) WILD-TYPE     78     34     31     28     48     21
D63V3, multiclass
        clus
vv       DEL PEAK 35(21Q22.3) MUTATED DEL PEAK 35(21Q22.3) WILD-TYPE
  CLUS_1                           27                             78
  CLUS_2                           17                             34
  CLUS_3                           13                             31
  CLUS_4                           23                             28
  CLUS_5                           10                             48
  CLUS_6                           17                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(21Q22.3) MUTATED       18     35     28     26
  DEL PEAK 35(21Q22.3) WILD-TYPE     56     78     64     42
D63V4, multiclass
        clus
vv       DEL PEAK 35(21Q22.3) MUTATED DEL PEAK 35(21Q22.3) WILD-TYPE
  CLUS_1                           18                             56
  CLUS_2                           35                             78
  CLUS_3                           28                             64
  CLUS_4                           26                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(21Q22.3) MUTATED        9    100     18     19
  DEL PEAK 35(21Q22.3) WILD-TYPE     86     41    129     89
D63V5, multiclass
        clus
vv       DEL PEAK 35(21Q22.3) MUTATED DEL PEAK 35(21Q22.3) WILD-TYPE
  CLUS_1                            9                             86
  CLUS_2                          100                             41
  CLUS_3                           18                            129
  CLUS_4                           19                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(21Q22.3) MUTATED       43     21     82
  DEL PEAK 35(21Q22.3) WILD-TYPE    128    184     33
D63V6, multiclass
        clus
vv       DEL PEAK 35(21Q22.3) MUTATED DEL PEAK 35(21Q22.3) WILD-TYPE
  CLUS_1                           43                            128
  CLUS_2                           21                            184
  CLUS_3                           82                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(21Q22.3) MUTATED       70     12     36     26
  DEL PEAK 35(21Q22.3) WILD-TYPE    138     59     87     60
D63V7, multiclass
        clus
vv       DEL PEAK 35(21Q22.3) MUTATED DEL PEAK 35(21Q22.3) WILD-TYPE
  CLUS_1                           70                            138
  CLUS_2                           12                             59
  CLUS_3                           36                             87
  CLUS_4                           26                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(21Q22.3) MUTATED       44     15     33     38     14
  DEL PEAK 35(21Q22.3) WILD-TYPE    103     83     26     90     42
D63V8, multiclass
        clus
vv       DEL PEAK 35(21Q22.3) MUTATED DEL PEAK 35(21Q22.3) WILD-TYPE
  CLUS_1                           44                            103
  CLUS_2                           15                             83
  CLUS_3                           33                             26
  CLUS_4                           38                             90
  CLUS_5                           14                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(21Q22.3) MUTATED       21     29     22     24
  DEL PEAK 35(21Q22.3) WILD-TYPE     44     62     56     60
D63V9, multiclass
        clus
vv       DEL PEAK 35(21Q22.3) MUTATED DEL PEAK 35(21Q22.3) WILD-TYPE
  CLUS_1                           21                             44
  CLUS_2                           29                             62
  CLUS_3                           22                             56
  CLUS_4                           24                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(21Q22.3) MUTATED       18     28     18     13     19
  DEL PEAK 35(21Q22.3) WILD-TYPE     57     58     51     10     46
D63V10, multiclass
        clus
vv       DEL PEAK 35(21Q22.3) MUTATED DEL PEAK 35(21Q22.3) WILD-TYPE
  CLUS_1                           18                             57
  CLUS_2                           28                             58
  CLUS_3                           18                             51
  CLUS_4                           13                             10
  CLUS_5                           19                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
