[1] "ofn"        "-oTPRAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PRAD-TP/22553796/PRAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PRAD-TP/22592902/transformed.cor.cli.txt"

nPatients in clinical file=498, in cluster file=498, common to both=498
[1] "Reduce the number of clustering variables from 45 to 44."
[1]  44 498
[1] "SPOP MUTATION ANALYSIS"
[1] 3
  SPOP MUTATED SPOP WILD-TYPE 
            57            441 
  SPOP MUTATED SPOP WILD-TYPE 
            57            441 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            57            441 
  TP53 MUTATED TP53 WILD-TYPE 
            57            441 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            17            481 
  PTEN MUTATED PTEN WILD-TYPE 
            17            481 
[1] "NUDT11 MUTATION ANALYSIS"
[1] 3
  NUDT11 MUTATED NUDT11 WILD-TYPE 
              11              487 
  NUDT11 MUTATED NUDT11 WILD-TYPE 
              11              487 
[1] "MLL2 MUTATION ANALYSIS"
[1] 3
  MLL2 MUTATED MLL2 WILD-TYPE 
            29            469 
  MLL2 MUTATED MLL2 WILD-TYPE 
            29            469 
[1] "CTNNB1 MUTATION ANALYSIS"
[1] 3
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              13              485 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              13              485 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              14              484 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              14              484 
[1] "KDM6A MUTATION ANALYSIS"
[1] 3
  KDM6A MUTATED KDM6A WILD-TYPE 
             13             485 
  KDM6A MUTATED KDM6A WILD-TYPE 
             13             485 
[1] "FOXA1 MUTATION ANALYSIS"
[1] 3
  FOXA1 MUTATED FOXA1 WILD-TYPE 
             28             470 
  FOXA1 MUTATED FOXA1 WILD-TYPE 
             28             470 
[1] "MLL3 MUTATION ANALYSIS"
[1] 3
  MLL3 MUTATED MLL3 WILD-TYPE 
            29            469 
  MLL3 MUTATED MLL3 WILD-TYPE 
            29            469 
[1] "GAGE2A MUTATION ANALYSIS"
[1] 3
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               5              493 
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               5              493 
[1] "TNRC18 MUTATION ANALYSIS"
[1] 3
  TNRC18 MUTATED TNRC18 WILD-TYPE 
               9              489 
  TNRC18 MUTATED TNRC18 WILD-TYPE 
               9              489 
[1] "AGAP6 MUTATION ANALYSIS"
[1] 3
  AGAP6 MUTATED AGAP6 WILD-TYPE 
              5             493 
  AGAP6 MUTATED AGAP6 WILD-TYPE 
              5             493 
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
             6            492 
  IDH1 MUTATED IDH1 WILD-TYPE 
             6            492 
[1] "GATA6 MUTATION ANALYSIS"
[1] 3
  GATA6 MUTATED GATA6 WILD-TYPE 
              4             494 
  GATA6 MUTATED GATA6 WILD-TYPE 
              4             494 
[1] "SMG7 MUTATION ANALYSIS"
[1] 3
  SMG7 MUTATED SMG7 WILD-TYPE 
             8            490 
  SMG7 MUTATED SMG7 WILD-TYPE 
             8            490 
[1] "CNTNAP1 MUTATION ANALYSIS"
[1] 3
  CNTNAP1 MUTATED CNTNAP1 WILD-TYPE 
                9               489 
  CNTNAP1 MUTATED CNTNAP1 WILD-TYPE 
                9               489 
[1] "CDKN1B MUTATION ANALYSIS"
[1] 3
  CDKN1B MUTATED CDKN1B WILD-TYPE 
               6              492 
  CDKN1B MUTATED CDKN1B WILD-TYPE 
               6              492 
[1] "EOMES MUTATION ANALYSIS"
[1] 3
  EOMES MUTATED EOMES WILD-TYPE 
              5             493 
  EOMES MUTATED EOMES WILD-TYPE 
              5             493 
[1] "NBPF1 MUTATION ANALYSIS"
[1] 3
  NBPF1 MUTATED NBPF1 WILD-TYPE 
              9             489 
  NBPF1 MUTATED NBPF1 WILD-TYPE 
              9             489 
[1] "LMOD2 MUTATION ANALYSIS"
[1] 3
  LMOD2 MUTATED LMOD2 WILD-TYPE 
              6             492 
  LMOD2 MUTATED LMOD2 WILD-TYPE 
              6             492 
[1] "EHHADH MUTATION ANALYSIS"
[1] 3
  EHHADH MUTATED EHHADH WILD-TYPE 
               5              493 
  EHHADH MUTATED EHHADH WILD-TYPE 
               5              493 
[1] "MED12 MUTATION ANALYSIS"
[1] 3
  MED12 MUTATED MED12 WILD-TYPE 
              8             490 
  MED12 MUTATED MED12 WILD-TYPE 
              8             490 
[1] "ZNF709 MUTATION ANALYSIS"
[1] 3
  ZNF709 MUTATED ZNF709 WILD-TYPE 
               5              493 
  ZNF709 MUTATED ZNF709 WILD-TYPE 
               5              493 
[1] "TCEB3 MUTATION ANALYSIS"
[1] 3
  TCEB3 MUTATED TCEB3 WILD-TYPE 
              4             494 
  TCEB3 MUTATED TCEB3 WILD-TYPE 
              4             494 
[1] "MED15 MUTATION ANALYSIS"
[1] 3
  MED15 MUTATED MED15 WILD-TYPE 
              7             491 
  MED15 MUTATED MED15 WILD-TYPE 
              7             491 
[1] "ERF MUTATION ANALYSIS"
[1] 3
  ERF MUTATED ERF WILD-TYPE 
            5           493 
  ERF MUTATED ERF WILD-TYPE 
            5           493 
[1] "ERN1 MUTATION ANALYSIS"
[1] 3
  ERN1 MUTATED ERN1 WILD-TYPE 
             4            494 
  ERN1 MUTATED ERN1 WILD-TYPE 
             4            494 
[1] "MLLT10 MUTATION ANALYSIS"
[1] 3
  MLLT10 MUTATED MLLT10 WILD-TYPE 
               5              493 
  MLLT10 MUTATED MLLT10 WILD-TYPE 
               5              493 
[1] "ZFHX3 MUTATION ANALYSIS"
[1] 3
  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
             16             482 
  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
             16             482 
[1] "ZMYM3 MUTATION ANALYSIS"
[1] 3
  ZMYM3 MUTATED ZMYM3 WILD-TYPE 
             12             486 
  ZMYM3 MUTATED ZMYM3 WILD-TYPE 
             12             486 
[1] "FMN1 MUTATION ANALYSIS"
[1] 3
  FMN1 MUTATED FMN1 WILD-TYPE 
             4            494 
  FMN1 MUTATED FMN1 WILD-TYPE 
             4            494 
[1] "AKT1 MUTATION ANALYSIS"
[1] 3
  AKT1 MUTATED AKT1 WILD-TYPE 
             3            495 
  AKT1 MUTATED AKT1 WILD-TYPE 
             3            495 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           22           476 
  ATM MUTATED ATM WILD-TYPE 
           22           476 
[1] "STRC MUTATION ANALYSIS"
[1] 3
  STRC MUTATED STRC WILD-TYPE 
             5            493 
  STRC MUTATED STRC WILD-TYPE 
             5            493 
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
           10           488 
  APC MUTATED APC WILD-TYPE 
           10           488 
[1] "ZFP36L2 MUTATION ANALYSIS"
[1] 3
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                4               494 
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                4               494 
[1] "MYOT MUTATION ANALYSIS"
[1] 3
  MYOT MUTATED MYOT WILD-TYPE 
             5            493 
  MYOT MUTATED MYOT WILD-TYPE 
             5            493 
[1] "KIRREL MUTATION ANALYSIS"
[1] 3
  KIRREL MUTATED KIRREL WILD-TYPE 
               6              492 
  KIRREL MUTATED KIRREL WILD-TYPE 
               6              492 
[1] "PGBD2 MUTATION ANALYSIS"
[1] 3
  PGBD2 MUTATED PGBD2 WILD-TYPE 
              3             495 
  PGBD2 MUTATED PGBD2 WILD-TYPE 
              3             495 
[1] "LOC100132247 MUTATION ANALYSIS"
[1] 3
  LOC100132247 MUTATED LOC100132247 WILD-TYPE 
                     3                    495 
  LOC100132247 MUTATED LOC100132247 WILD-TYPE 
                     3                    495 
[1] "EMG1 MUTATION ANALYSIS"
[1] 3
  EMG1 MUTATED EMG1 WILD-TYPE 
             4            494 
  EMG1 MUTATED EMG1 WILD-TYPE 
             4            494 
[1] "CDH16 MUTATION ANALYSIS"
[1] 3
  CDH16 MUTATED CDH16 WILD-TYPE 
              4             494 
  CDH16 MUTATED CDH16 WILD-TYPE 
              4             494 
[1] "KRT25 MUTATION ANALYSIS"
[1] 3
  KRT25 MUTATED KRT25 WILD-TYPE 
              6             492 
  KRT25 MUTATED KRT25 WILD-TYPE 
              6             492 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 498 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 498 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = SPOP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOP MUTATED        0      4     20     31
  SPOP WILD-TYPE    108     87     78    164
D1V1, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            0            108
  CLUS_2            4             87
  CLUS_3           20             78
  CLUS_4           31            164
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOP MUTATED       10     44      1      2
  SPOP WILD-TYPE    151     96    125     69
D1V2, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1           10            151
  CLUS_2           44             96
  CLUS_3            1            125
  CLUS_4            2             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPOP MUTATED        8      6      3      3     11      1
  SPOP WILD-TYPE     98     45     42     50     47     38
D1V3, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            8             98
  CLUS_2            6             45
  CLUS_3            3             42
  CLUS_4            3             50
  CLUS_5           11             47
  CLUS_6            1             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOP MUTATED        6     10      8      8
  SPOP WILD-TYPE     69    104     85     62
D1V4, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            6             69
  CLUS_2           10            104
  CLUS_3            8             85
  CLUS_4            8             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOP MUTATED        6      0     42      9
  SPOP WILD-TYPE     90    142    109     99
D1V5, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            6             90
  CLUS_2            0            142
  CLUS_3           42            109
  CLUS_4            9             99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SPOP MUTATED       10     47      0
  SPOP WILD-TYPE    163    161    116
D1V6, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1           10            163
  CLUS_2           47            161
  CLUS_3            0            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOP MUTATED       32      5     10     10
  SPOP WILD-TYPE    181     66    114     76
D1V7, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1           32            181
  CLUS_2            5             66
  CLUS_3           10            114
  CLUS_4           10             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPOP MUTATED       17     10      2     20      8
  SPOP WILD-TYPE    131     88     57    113     48
D1V8, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1           17            131
  CLUS_2           10             88
  CLUS_3            2             57
  CLUS_4           20            113
  CLUS_5            8             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOP MUTATED        4     13      5     13
  SPOP WILD-TYPE     61     80     73     71
D1V9, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            4             61
  CLUS_2           13             80
  CLUS_3            5             73
  CLUS_4           13             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPOP MUTATED        7     13      7      0      8
  SPOP WILD-TYPE     68     75     62     23     57
D1V10, multiclass
        clus
vv       SPOP MUTATED SPOP WILD-TYPE
  CLUS_1            7             68
  CLUS_2           13             75
  CLUS_3            7             62
  CLUS_4            0             23
  CLUS_5            8             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED        8      2      1     45
  TP53 WILD-TYPE    100     89     97    150
D2V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            8            100
  CLUS_2            2             89
  CLUS_3            1             97
  CLUS_4           45            150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       11     11     24     11
  TP53 WILD-TYPE    150    129    102     60
D2V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           11            150
  CLUS_2           11            129
  CLUS_3           24            102
  CLUS_4           11             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53 MUTATED        5      7      3      8      3     11
  TP53 WILD-TYPE    101     44     42     45     55     28
D2V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            5            101
  CLUS_2            7             44
  CLUS_3            3             42
  CLUS_4            8             45
  CLUS_5            3             55
  CLUS_6           11             28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED        4      9     11     13
  TP53 WILD-TYPE     71    105     82     57
D2V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4             71
  CLUS_2            9            105
  CLUS_3           11             82
  CLUS_4           13             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED        4     25     21      7
  TP53 WILD-TYPE     92    117    130    101
D2V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4             92
  CLUS_2           25            117
  CLUS_3           21            130
  CLUS_4            7            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       10     20     27
  TP53 WILD-TYPE    163    188     89
D2V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           10            163
  CLUS_2           20            188
  CLUS_3           27             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       33      4     10     10
  TP53 WILD-TYPE    180     67    114     76
D2V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           33            180
  CLUS_2            4             67
  CLUS_3           10            114
  CLUS_4           10             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       10      6     12     22      7
  TP53 WILD-TYPE    138     92     47    111     49
D2V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           10            138
  CLUS_2            6             92
  CLUS_3           12             47
  CLUS_4           22            111
  CLUS_5            7             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED        2     17      9     13
  TP53 WILD-TYPE     63     76     69     71
D2V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            2             63
  CLUS_2           17             76
  CLUS_3            9             69
  CLUS_4           13             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED        9     18      6      0      8
  TP53 WILD-TYPE     66     70     63     23     57
D2V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            9             66
  CLUS_2           18             70
  CLUS_3            6             63
  CLUS_4            0             23
  CLUS_5            8             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        4      1      3      9
  PTEN WILD-TYPE    104     90     95    186
D3V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            4            104
  CLUS_2            1             90
  CLUS_3            3             95
  CLUS_4            9            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        3      5      6      3
  PTEN WILD-TYPE    158    135    120     68
D3V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3            158
  CLUS_2            5            135
  CLUS_3            6            120
  CLUS_4            3             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTEN MUTATED        2      3      4      1      2      1
  PTEN WILD-TYPE    104     48     41     52     56     38
D3V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2            104
  CLUS_2            3             48
  CLUS_3            4             41
  CLUS_4            1             52
  CLUS_5            2             56
  CLUS_6            1             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        2      7      2      2
  PTEN WILD-TYPE     73    107     91     68
D3V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2             73
  CLUS_2            7            107
  CLUS_3            2             91
  CLUS_4            2             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        1      9      7      0
  PTEN WILD-TYPE     95    133    144    108
D3V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             95
  CLUS_2            9            133
  CLUS_3            7            144
  CLUS_4            0            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        1      6     10
  PTEN WILD-TYPE    172    202    106
D3V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1            172
  CLUS_2            6            202
  CLUS_3           10            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED       10      2      2      3
  PTEN WILD-TYPE    203     69    122     83
D3V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           10            203
  CLUS_2            2             69
  CLUS_3            2            122
  CLUS_4            3             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        6      1      0      6      4
  PTEN WILD-TYPE    142     97     59    127     52
D3V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            6            142
  CLUS_2            1             97
  CLUS_3            0             59
  CLUS_4            6            127
  CLUS_5            4             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        1      5      3      4
  PTEN WILD-TYPE     64     88     75     80
D3V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             64
  CLUS_2            5             88
  CLUS_3            3             75
  CLUS_4            4             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        3      5      2      0      3
  PTEN WILD-TYPE     72     83     67     23     62
D3V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3             72
  CLUS_2            5             83
  CLUS_3            2             67
  CLUS_4            0             23
  CLUS_5            3             62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = NUDT11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        1      2      4      4
  NUDT11 WILD-TYPE    107     89     94    191
D4V1, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              1              107
  CLUS_2              2               89
  CLUS_3              4               94
  CLUS_4              4              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        4      4      2      1
  NUDT11 WILD-TYPE    157    136    124     70
D4V2, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              4              157
  CLUS_2              4              136
  CLUS_3              2              124
  CLUS_4              1               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NUDT11 MUTATED        1      1      4      2      2      0
  NUDT11 WILD-TYPE    105     50     41     51     56     39
D4V3, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               50
  CLUS_3              4               41
  CLUS_4              2               51
  CLUS_5              2               56
  CLUS_6              0               39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        0      6      1      3
  NUDT11 WILD-TYPE     75    108     92     67
D4V4, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              0               75
  CLUS_2              6              108
  CLUS_3              1               92
  CLUS_4              3               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        1      4      3      3
  NUDT11 WILD-TYPE     95    138    148    105
D4V5, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              1               95
  CLUS_2              4              138
  CLUS_3              3              148
  CLUS_4              3              105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        4      4      3
  NUDT11 WILD-TYPE    169    204    113
D4V6, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              4              169
  CLUS_2              4              204
  CLUS_3              3              113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        3      1      5      2
  NUDT11 WILD-TYPE    210     70    119     84
D4V7, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              3              210
  CLUS_2              1               70
  CLUS_3              5              119
  CLUS_4              2               84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUDT11 MUTATED        6      2      0      2      1
  NUDT11 WILD-TYPE    142     96     59    131     55
D4V8, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              6              142
  CLUS_2              2               96
  CLUS_3              0               59
  CLUS_4              2              131
  CLUS_5              1               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        0      1      2      2
  NUDT11 WILD-TYPE     65     92     76     82
D4V9, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              0               65
  CLUS_2              1               92
  CLUS_3              2               76
  CLUS_4              2               82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUDT11 MUTATED        3      1      1      0      0
  NUDT11 WILD-TYPE     72     87     68     23     65
D4V10, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              3               72
  CLUS_2              1               87
  CLUS_3              1               68
  CLUS_4              0               23
  CLUS_5              0               65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = MLL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED        3      2      8     16
  MLL2 WILD-TYPE    105     89     90    179
D5V1, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            3            105
  CLUS_2            2             89
  CLUS_3            8             90
  CLUS_4           16            179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED        8     11      3      7
  MLL2 WILD-TYPE    153    129    123     64
D5V2, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            8            153
  CLUS_2           11            129
  CLUS_3            3            123
  CLUS_4            7             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL2 MUTATED        5      2      3      1      5      5
  MLL2 WILD-TYPE    101     49     42     52     53     34
D5V3, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            5            101
  CLUS_2            2             49
  CLUS_3            3             42
  CLUS_4            1             52
  CLUS_5            5             53
  CLUS_6            5             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED        2      7      6      6
  MLL2 WILD-TYPE     73    107     87     64
D5V4, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            2             73
  CLUS_2            7            107
  CLUS_3            6             87
  CLUS_4            6             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED        7      2     13      7
  MLL2 WILD-TYPE     89    140    138    101
D5V5, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            7             89
  CLUS_2            2            140
  CLUS_3           13            138
  CLUS_4            7            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       10     18      1
  MLL2 WILD-TYPE    163    190    115
D5V6, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           10            163
  CLUS_2           18            190
  CLUS_3            1            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       14      7      5      3
  MLL2 WILD-TYPE    199     64    119     83
D5V7, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           14            199
  CLUS_2            7             64
  CLUS_3            5            119
  CLUS_4            3             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL2 MUTATED        7      9      5      6      2
  MLL2 WILD-TYPE    141     89     54    127     54
D5V8, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            7            141
  CLUS_2            9             89
  CLUS_3            5             54
  CLUS_4            6            127
  CLUS_5            2             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED        0     12      5      3
  MLL2 WILD-TYPE     65     81     73     81
D5V9, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            0             65
  CLUS_2           12             81
  CLUS_3            5             73
  CLUS_4            3             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL2 MUTATED        4      9      5      0      2
  MLL2 WILD-TYPE     71     79     64     23     63
D5V10, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            4             71
  CLUS_2            9             79
  CLUS_3            5             64
  CLUS_4            0             23
  CLUS_5            2             63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = CTNNB1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        2      1      6      4
  CTNNB1 WILD-TYPE    106     90     92    191
D6V1, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              2              106
  CLUS_2              1               90
  CLUS_3              6               92
  CLUS_4              4              191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        0      6      3      4
  CTNNB1 WILD-TYPE    161    134    123     67
D6V2, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              0              161
  CLUS_2              6              134
  CLUS_3              3              123
  CLUS_4              4               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTNNB1 MUTATED        0      1      0      2      2      2
  CTNNB1 WILD-TYPE    106     50     45     51     56     37
D6V3, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              1               50
  CLUS_3              0               45
  CLUS_4              2               51
  CLUS_5              2               56
  CLUS_6              2               37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        0      1      1      5
  CTNNB1 WILD-TYPE     75    113     92     65
D6V4, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              0               75
  CLUS_2              1              113
  CLUS_3              1               92
  CLUS_4              5               65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        1      5      7      0
  CTNNB1 WILD-TYPE     95    137    144    108
D6V5, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              1               95
  CLUS_2              5              137
  CLUS_3              7              144
  CLUS_4              0              108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        2      6      5
  CTNNB1 WILD-TYPE    171    202    111
D6V6, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              2              171
  CLUS_2              6              202
  CLUS_3              5              111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        9      1      0      3
  CTNNB1 WILD-TYPE    204     70    124     83
D6V7, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              9              204
  CLUS_2              1               70
  CLUS_3              0              124
  CLUS_4              3               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNB1 MUTATED        1      0      1      8      3
  CTNNB1 WILD-TYPE    147     98     58    125     53
D6V8, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              1              147
  CLUS_2              0               98
  CLUS_3              1               58
  CLUS_4              8              125
  CLUS_5              3               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        0      6      0      3
  CTNNB1 WILD-TYPE     65     87     78     81
D6V9, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              0               65
  CLUS_2              6               87
  CLUS_3              0               78
  CLUS_4              3               81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNB1 MUTATED        1      6      0      0      2
  CTNNB1 WILD-TYPE     74     82     69     23     63
D6V10, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              6               82
  CLUS_3              0               69
  CLUS_4              0               23
  CLUS_5              2               63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        4      0      1      9
  PIK3CA WILD-TYPE    104     91     97    186
D7V1, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              4              104
  CLUS_2              0               91
  CLUS_3              1               97
  CLUS_4              9              186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        0      5      5      4
  PIK3CA WILD-TYPE    161    135    121     67
D7V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              0              161
  CLUS_2              5              135
  CLUS_3              5              121
  CLUS_4              4               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3CA MUTATED        0      1      1      3      0      1
  PIK3CA WILD-TYPE    106     50     44     50     58     38
D7V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              0              106
  CLUS_2              1               50
  CLUS_3              1               44
  CLUS_4              3               50
  CLUS_5              0               58
  CLUS_6              1               38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        0      2      2      2
  PIK3CA WILD-TYPE     75    112     91     68
D7V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              0               75
  CLUS_2              2              112
  CLUS_3              2               91
  CLUS_4              2               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        0      5      9      0
  PIK3CA WILD-TYPE     96    137    142    108
D7V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              0               96
  CLUS_2              5              137
  CLUS_3              9              142
  CLUS_4              0              108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        1      5      8
  PIK3CA WILD-TYPE    172    203    108
D7V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1              172
  CLUS_2              5              203
  CLUS_3              8              108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        9      1      0      4
  PIK3CA WILD-TYPE    204     70    124     82
D7V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              9              204
  CLUS_2              1               70
  CLUS_3              0              124
  CLUS_4              4               82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        1      0      3      7      3
  PIK3CA WILD-TYPE    147     98     56    126     53
D7V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1              147
  CLUS_2              0               98
  CLUS_3              3               56
  CLUS_4              7              126
  CLUS_5              3               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        1      3      2      5
  PIK3CA WILD-TYPE     64     90     76     79
D7V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1               64
  CLUS_2              3               90
  CLUS_3              2               76
  CLUS_4              5               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        0      6      2      1      2
  PIK3CA WILD-TYPE     75     82     67     22     63
D7V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              0               75
  CLUS_2              6               82
  CLUS_3              2               67
  CLUS_4              1               22
  CLUS_5              2               63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = KDM6A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        1      3      4      5
  KDM6A WILD-TYPE    107     88     94    190
D8V1, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             1             107
  CLUS_2             3              88
  CLUS_3             4              94
  CLUS_4             5             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        2      9      1      1
  KDM6A WILD-TYPE    159    131    125     70
D8V2, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2             159
  CLUS_2             9             131
  CLUS_3             1             125
  CLUS_4             1              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDM6A MUTATED        2      2      2      0      2      0
  KDM6A WILD-TYPE    104     49     43     53     56     39
D8V3, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2             104
  CLUS_2             2              49
  CLUS_3             2              43
  CLUS_4             0              53
  CLUS_5             2              56
  CLUS_6             0              39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        1      2      2      3
  KDM6A WILD-TYPE     74    112     91     67
D8V4, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             1              74
  CLUS_2             2             112
  CLUS_3             2              91
  CLUS_4             3              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        4      1      8      0
  KDM6A WILD-TYPE     92    141    143    108
D8V5, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             4              92
  CLUS_2             1             141
  CLUS_3             8             143
  CLUS_4             0             108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        1     11      1
  KDM6A WILD-TYPE    172    197    115
D8V6, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             1             172
  CLUS_2            11             197
  CLUS_3             1             115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        7      2      0      4
  KDM6A WILD-TYPE    206     69    124     82
D8V7, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             7             206
  CLUS_2             2              69
  CLUS_3             0             124
  CLUS_4             4              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        2      6      1      3      1
  KDM6A WILD-TYPE    146     92     58    130     55
D8V8, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             2             146
  CLUS_2             6              92
  CLUS_3             1              58
  CLUS_4             3             130
  CLUS_5             1              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        0      3      1      4
  KDM6A WILD-TYPE     65     90     77     80
D8V9, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             0              65
  CLUS_2             3              90
  CLUS_3             1              77
  CLUS_4             4              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        0      3      3      0      2
  KDM6A WILD-TYPE     75     85     66     23     63
D8V10, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             0              75
  CLUS_2             3              85
  CLUS_3             3              66
  CLUS_4             0              23
  CLUS_5             2              63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = FOXA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA1 MUTATED        1      1     11     14
  FOXA1 WILD-TYPE    107     90     87    181
D9V1, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             1             107
  CLUS_2             1              90
  CLUS_3            11              87
  CLUS_4            14             181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA1 MUTATED        2     22      1      3
  FOXA1 WILD-TYPE    159    118    125     68
D9V2, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             2             159
  CLUS_2            22             118
  CLUS_3             1             125
  CLUS_4             3              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXA1 MUTATED        3      2      2      4     10      0
  FOXA1 WILD-TYPE    103     49     43     49     48     39
D9V3, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             2              49
  CLUS_3             2              43
  CLUS_4             4              49
  CLUS_5            10              48
  CLUS_6             0              39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA1 MUTATED        2      6      4      9
  FOXA1 WILD-TYPE     73    108     89     61
D9V4, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             6             108
  CLUS_3             4              89
  CLUS_4             9              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA1 MUTATED        3      0     24      1
  FOXA1 WILD-TYPE     93    142    127    107
D9V5, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             3              93
  CLUS_2             0             142
  CLUS_3            24             127
  CLUS_4             1             107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA1 MUTATED        3     24      1
  FOXA1 WILD-TYPE    170    184    115
D9V6, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             3             170
  CLUS_2            24             184
  CLUS_3             1             115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA1 MUTATED       18      2      3      5
  FOXA1 WILD-TYPE    195     69    121     81
D9V7, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1            18             195
  CLUS_2             2              69
  CLUS_3             3             121
  CLUS_4             5              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXA1 MUTATED        2      9      1     12      4
  FOXA1 WILD-TYPE    146     89     58    121     52
D9V8, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             2             146
  CLUS_2             9              89
  CLUS_3             1              58
  CLUS_4            12             121
  CLUS_5             4              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA1 MUTATED        2      4      1      7
  FOXA1 WILD-TYPE     63     89     77     77
D9V9, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             2              63
  CLUS_2             4              89
  CLUS_3             1              77
  CLUS_4             7              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXA1 MUTATED        1      6      2      0      5
  FOXA1 WILD-TYPE     74     82     67     23     60
D9V10, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             6              82
  CLUS_3             2              67
  CLUS_4             0              23
  CLUS_5             5              60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = MLL3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED        4      1      7     17
  MLL3 WILD-TYPE    104     90     91    178
D10V1, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            4            104
  CLUS_2            1             90
  CLUS_3            7             91
  CLUS_4           17            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED        5     10      9      5
  MLL3 WILD-TYPE    156    130    117     66
D10V2, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            5            156
  CLUS_2           10            130
  CLUS_3            9            117
  CLUS_4            5             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL3 MUTATED        6      3      2      4      2      4
  MLL3 WILD-TYPE    100     48     43     49     56     35
D10V3, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            6            100
  CLUS_2            3             48
  CLUS_3            2             43
  CLUS_4            4             49
  CLUS_5            2             56
  CLUS_6            4             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED        1      3     11      6
  MLL3 WILD-TYPE     74    111     82     64
D10V4, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            1             74
  CLUS_2            3            111
  CLUS_3           11             82
  CLUS_4            6             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED        4      9     11      5
  MLL3 WILD-TYPE     92    133    140    103
D10V5, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            4             92
  CLUS_2            9            133
  CLUS_3           11            140
  CLUS_4            5            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED        8     14      7
  MLL3 WILD-TYPE    165    194    109
D10V6, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            8            165
  CLUS_2           14            194
  CLUS_3            7            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED       18      3      4      4
  MLL3 WILD-TYPE    195     68    120     82
D10V7, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           18            195
  CLUS_2            3             68
  CLUS_3            4            120
  CLUS_4            4             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL3 MUTATED        7      6      6      9      1
  MLL3 WILD-TYPE    141     92     53    124     55
D10V8, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            7            141
  CLUS_2            6             92
  CLUS_3            6             53
  CLUS_4            9            124
  CLUS_5            1             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED        3     10      3      5
  MLL3 WILD-TYPE     62     83     75     79
D10V9, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            3             62
  CLUS_2           10             83
  CLUS_3            3             75
  CLUS_4            5             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL3 MUTATED        2     13      2      1      3
  MLL3 WILD-TYPE     73     75     67     22     62
D10V10, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            2             73
  CLUS_2           13             75
  CLUS_3            2             67
  CLUS_4            1             22
  CLUS_5            3             62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = GAGE2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        1      2      0      2
  GAGE2A WILD-TYPE    107     89     98    193
D11V1, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              107
  CLUS_2              2               89
  CLUS_3              0               98
  CLUS_4              2              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        3      1      1      0
  GAGE2A WILD-TYPE    158    139    125     71
D11V2, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              3              158
  CLUS_2              1              139
  CLUS_3              1              125
  CLUS_4              0               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GAGE2A MUTATED        1      0      0      1      0      0
  GAGE2A WILD-TYPE    105     51     45     52     58     39
D11V3, multiclass
[1] "Remove cluster labels:" "GAGE2A MUTATED"        
clus
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               2              350 
      TCGA-2A-A8VL       TCGA-2A-A8VO       TCGA-2A-A8VT       TCGA-2A-A8VV 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-2A-A8VX       TCGA-2A-A8W1       TCGA-2A-A8W3       TCGA-2A-AAYF 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-2A-AAYO       TCGA-2A-AAYU       TCGA-4L-AA1F       TCGA-CH-5737 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5740       TCGA-CH-5741 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CH-5743       TCGA-CH-5744       TCGA-CH-5745       TCGA-CH-5748 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5751       TCGA-CH-5752       TCGA-CH-5753 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CH-5754       TCGA-CH-5761       TCGA-CH-5762       TCGA-CH-5763 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CH-5764       TCGA-CH-5765       TCGA-CH-5766       TCGA-CH-5767 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CH-5768       TCGA-CH-5769       TCGA-CH-5771       TCGA-CH-5772 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CH-5788       TCGA-CH-5789       TCGA-CH-5790       TCGA-CH-5791 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494       TCGA-EJ-5495 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-5496       TCGA-EJ-5498       TCGA-EJ-5499       TCGA-EJ-5501 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-5502       TCGA-EJ-5503       TCGA-EJ-5504       TCGA-EJ-5505 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-5506       TCGA-EJ-5507       TCGA-EJ-5508       TCGA-EJ-5509 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-5510       TCGA-EJ-5511       TCGA-EJ-5512       TCGA-EJ-5514 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-5515       TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5518 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-5519       TCGA-EJ-5521       TCGA-EJ-5522       TCGA-EJ-5524 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5530 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-5531       TCGA-EJ-5532       TCGA-EJ-5542       TCGA-EJ-7115 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-7125       TCGA-EJ-7218       TCGA-EJ-7312       TCGA-EJ-7314 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-7315       TCGA-EJ-7317       TCGA-EJ-7318       TCGA-EJ-7321 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-7325       TCGA-EJ-7328       TCGA-EJ-7330       TCGA-EJ-7331 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-7781       TCGA-EJ-7782       TCGA-EJ-7783       TCGA-EJ-7784 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788       TCGA-EJ-7789 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793       TCGA-EJ-7794 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469       TCGA-EJ-8470 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-8474       TCGA-EJ-A46B       TCGA-EJ-A46D       TCGA-EJ-A46E 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-A46F       TCGA-EJ-A46G       TCGA-EJ-A65B       TCGA-EJ-A65D 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-A65E       TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A65M 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-A6RA       TCGA-EJ-A6RC       TCGA-EJ-A7NF       TCGA-EJ-A7NG 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK       TCGA-EJ-A7NM 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-A7NN       TCGA-EJ-A8FN       TCGA-EJ-A8FO       TCGA-EJ-A8FS 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-A8FU       TCGA-EJ-AB20       TCGA-EJ-AB27       TCGA-FC-7708 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-FC-7961       TCGA-FC-A4JI       TCGA-FC-A5OB       TCGA-FC-A66V 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-FC-A6HD       TCGA-FC-A8O0       TCGA-G9-6329       TCGA-G9-6338 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6343       TCGA-G9-6347 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-6351       TCGA-G9-6353       TCGA-G9-6356       TCGA-G9-6361 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-6362       TCGA-G9-6363       TCGA-G9-6364       TCGA-G9-6365 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-6366       TCGA-G9-6367       TCGA-G9-6370       TCGA-G9-6371 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-6373       TCGA-G9-6377       TCGA-G9-6378       TCGA-G9-6379 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-6384       TCGA-G9-6494       TCGA-G9-6496       TCGA-G9-6498 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7521       TCGA-G9-7522 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-7523       TCGA-G9-7525       TCGA-G9-A9S0       TCGA-G9-A9S4 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-A9S7       TCGA-H9-7775       TCGA-H9-A6BX       TCGA-H9-A6BY 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-HC-7077       TCGA-HC-7079       TCGA-HC-7081       TCGA-HC-7210 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-HC-7211       TCGA-HC-7212       TCGA-HC-7213       TCGA-HC-7232 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-HC-7233       TCGA-HC-7736       TCGA-HC-7740       TCGA-HC-7744 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-HC-7748       TCGA-HC-7817       TCGA-HC-8264       TCGA-HC-A76X 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-HI-7168       TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-J4-8198       TCGA-J4-8200       TCGA-J4-A67K       TCGA-J4-A67M 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-J4-A67N       TCGA-J4-A67O       TCGA-J4-A67Q       TCGA-J4-A67R 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-J4-A67T       TCGA-J4-A6M7       TCGA-J4-A83I       TCGA-J4-A83J 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-J4-A83N       TCGA-J9-A52C       TCGA-J9-A52E       TCGA-J9-A8CK 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-J9-A8CM       TCGA-J9-A8CN       TCGA-J9-A8CP       TCGA-KC-A4BL 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KC-A4BN       TCGA-KC-A4BO       TCGA-KC-A4BR       TCGA-KC-A4BV 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KC-A7F3       TCGA-KC-A7F5       TCGA-KC-A7F6       TCGA-KC-A7FA 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KC-A7FD       TCGA-KC-A7FE       TCGA-KK-A59V       TCGA-KK-A59X 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KK-A59Y       TCGA-KK-A59Z       TCGA-KK-A5A1       TCGA-KK-A6E0 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KK-A6E1       TCGA-KK-A6E2       TCGA-KK-A6E3       TCGA-KK-A6E4 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KK-A6E8       TCGA-KK-A7AP       TCGA-KK-A7AU       TCGA-KK-A7AZ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KK-A7B0       TCGA-KK-A7B1       TCGA-KK-A7B2       TCGA-KK-A7B3 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KK-A7B4       TCGA-KK-A8I4       TCGA-KK-A8I5       TCGA-KK-A8I6 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KK-A8I7       TCGA-KK-A8I8       TCGA-KK-A8IA       TCGA-KK-A8IB 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KK-A8IC       TCGA-KK-A8ID       TCGA-KK-A8IF       TCGA-KK-A8IH 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KK-A8II       TCGA-KK-A8IJ       TCGA-M7-A71Y       TCGA-M7-A71Z 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-M7-A721       TCGA-M7-A722       TCGA-M7-A723       TCGA-M7-A724 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-M7-A725       TCGA-QU-A6IN       TCGA-QU-A6IP       TCGA-SU-A7E7 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-TK-A8OK       TCGA-TP-A8TT       TCGA-TP-A8TV       TCGA-V1-A8MF 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-V1-A8MJ       TCGA-V1-A8MU       TCGA-V1-A8WL       TCGA-V1-A8X3 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-V1-A9O5       TCGA-V1-A9OH       TCGA-V1-A9OL       TCGA-V1-A9OQ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-V1-A9OT       TCGA-V1-A9OX       TCGA-V1-A9OY       TCGA-V1-A9Z7 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-V1-A9Z8       TCGA-V1-A9Z9       TCGA-V1-A9ZG       TCGA-V1-A9ZI 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-V1-A9ZR       TCGA-VN-A88I       TCGA-VN-A88K       TCGA-VN-A88L 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-VN-A88P       TCGA-VP-A875       TCGA-VP-A878       TCGA-VP-A87E 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-VP-A87J       TCGA-VP-A87K       TCGA-VP-AA1N       TCGA-WW-A8ZI 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-X4-A8KQ       TCGA-XA-A8JR       TCGA-Y6-A8TL       TCGA-Y6-A9XI 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-YJ-A8SW       TCGA-YL-A8HJ       TCGA-YL-A8HK       TCGA-YL-A8HL 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-YL-A8HM       TCGA-YL-A8HO       TCGA-YL-A8S8       TCGA-YL-A8S9 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-YL-A8SA       TCGA-YL-A8SC       TCGA-YL-A8SF       TCGA-YL-A8SH 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-YL-A8SI       TCGA-YL-A8SJ       TCGA-YL-A8SK       TCGA-YL-A8SL 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-YL-A8SP       TCGA-YL-A8SQ       TCGA-YL-A8SR       TCGA-YL-A9WI 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-YL-A9WJ       TCGA-YL-A9WK       TCGA-YL-A9WL       TCGA-YL-A9WX 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-YL-A9WY       TCGA-ZG-A8QW       TCGA-ZG-A8QX       TCGA-ZG-A8QY 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ZG-A8QZ       TCGA-ZG-A9KY       TCGA-ZG-A9L0       TCGA-ZG-A9L1 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ZG-A9L4       TCGA-ZG-A9L5       TCGA-ZG-A9L6       TCGA-ZG-A9L9 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ZG-A9LB       TCGA-ZG-A9LM       TCGA-ZG-A9LS       TCGA-ZG-A9LU 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ZG-A9LY       TCGA-ZG-A9LZ       TCGA-ZG-A9M4       TCGA-ZG-A9MC 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ZG-A9N3       TCGA-ZG-A9NI 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        0      1      1      0
  GAGE2A WILD-TYPE     75    113     92     70
D11V4, multiclass
[1] "Remove cluster labels:" "GAGE2A MUTATED"        
clus
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               2              350 
      TCGA-2A-A8VL       TCGA-2A-A8VO       TCGA-2A-A8VT       TCGA-2A-A8VV 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-2A-A8VX       TCGA-2A-A8W1       TCGA-2A-A8W3       TCGA-2A-AAYF 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-2A-AAYO       TCGA-2A-AAYU       TCGA-4L-AA1F       TCGA-CH-5737 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5740       TCGA-CH-5741 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CH-5743       TCGA-CH-5744       TCGA-CH-5745       TCGA-CH-5748 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5751       TCGA-CH-5752       TCGA-CH-5753 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CH-5754       TCGA-CH-5761       TCGA-CH-5762       TCGA-CH-5763 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CH-5764       TCGA-CH-5765       TCGA-CH-5766       TCGA-CH-5767 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CH-5768       TCGA-CH-5769       TCGA-CH-5771       TCGA-CH-5772 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CH-5788       TCGA-CH-5789       TCGA-CH-5790       TCGA-CH-5791 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494       TCGA-EJ-5495 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-5496       TCGA-EJ-5498       TCGA-EJ-5499       TCGA-EJ-5501 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-5502       TCGA-EJ-5503       TCGA-EJ-5504       TCGA-EJ-5505 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-5506       TCGA-EJ-5507       TCGA-EJ-5508       TCGA-EJ-5509 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-5510       TCGA-EJ-5511       TCGA-EJ-5512       TCGA-EJ-5514 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-5515       TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5518 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-5519       TCGA-EJ-5521       TCGA-EJ-5522       TCGA-EJ-5524 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5530 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-5531       TCGA-EJ-5532       TCGA-EJ-5542       TCGA-EJ-7115 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-7125       TCGA-EJ-7218       TCGA-EJ-7312       TCGA-EJ-7314 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-7315       TCGA-EJ-7317       TCGA-EJ-7318       TCGA-EJ-7321 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-7325       TCGA-EJ-7328       TCGA-EJ-7330       TCGA-EJ-7331 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-7781       TCGA-EJ-7782       TCGA-EJ-7783       TCGA-EJ-7784 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788       TCGA-EJ-7789 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793       TCGA-EJ-7794 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469       TCGA-EJ-8470 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-8474       TCGA-EJ-A46B       TCGA-EJ-A46D       TCGA-EJ-A46E 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-A46F       TCGA-EJ-A46G       TCGA-EJ-A65B       TCGA-EJ-A65D 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-A65E       TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A65M 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-A6RA       TCGA-EJ-A6RC       TCGA-EJ-A7NF       TCGA-EJ-A7NG 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK       TCGA-EJ-A7NM 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-A7NN       TCGA-EJ-A8FN       TCGA-EJ-A8FO       TCGA-EJ-A8FS 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EJ-A8FU       TCGA-EJ-AB20       TCGA-EJ-AB27       TCGA-FC-7708 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-FC-7961       TCGA-FC-A4JI       TCGA-FC-A5OB       TCGA-FC-A66V 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-FC-A6HD       TCGA-FC-A8O0       TCGA-G9-6329       TCGA-G9-6338 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6343       TCGA-G9-6347 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-6351       TCGA-G9-6353       TCGA-G9-6356       TCGA-G9-6361 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-6362       TCGA-G9-6363       TCGA-G9-6364       TCGA-G9-6365 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-6366       TCGA-G9-6367       TCGA-G9-6370       TCGA-G9-6371 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-6373       TCGA-G9-6377       TCGA-G9-6378       TCGA-G9-6379 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-6384       TCGA-G9-6494       TCGA-G9-6496       TCGA-G9-6498 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7521       TCGA-G9-7522 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-7523       TCGA-G9-7525       TCGA-G9-A9S0       TCGA-G9-A9S4 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-G9-A9S7       TCGA-H9-7775       TCGA-H9-A6BX       TCGA-H9-A6BY 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-HC-7077       TCGA-HC-7079       TCGA-HC-7081       TCGA-HC-7210 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-HC-7211       TCGA-HC-7212       TCGA-HC-7213       TCGA-HC-7232 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-HC-7233       TCGA-HC-7736       TCGA-HC-7740       TCGA-HC-7744 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-HC-7748       TCGA-HC-7817       TCGA-HC-8264       TCGA-HC-A76X 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-HI-7168       TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-J4-8198       TCGA-J4-8200       TCGA-J4-A67K       TCGA-J4-A67M 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-J4-A67N       TCGA-J4-A67O       TCGA-J4-A67Q       TCGA-J4-A67R 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-J4-A67T       TCGA-J4-A6M7       TCGA-J4-A83I       TCGA-J4-A83J 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-J4-A83N       TCGA-J9-A52C       TCGA-J9-A52E       TCGA-J9-A8CK 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-J9-A8CM       TCGA-J9-A8CN       TCGA-J9-A8CP       TCGA-KC-A4BL 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KC-A4BN       TCGA-KC-A4BO       TCGA-KC-A4BR       TCGA-KC-A4BV 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KC-A7F3       TCGA-KC-A7F5       TCGA-KC-A7F6       TCGA-KC-A7FA 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KC-A7FD       TCGA-KC-A7FE       TCGA-KK-A59V       TCGA-KK-A59X 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KK-A59Y       TCGA-KK-A59Z       TCGA-KK-A5A1       TCGA-KK-A6E0 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KK-A6E1       TCGA-KK-A6E2       TCGA-KK-A6E3       TCGA-KK-A6E4 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KK-A6E8       TCGA-KK-A7AP       TCGA-KK-A7AU       TCGA-KK-A7AZ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KK-A7B0       TCGA-KK-A7B1       TCGA-KK-A7B2       TCGA-KK-A7B3 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KK-A7B4       TCGA-KK-A8I4       TCGA-KK-A8I5       TCGA-KK-A8I6 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KK-A8I7       TCGA-KK-A8I8       TCGA-KK-A8IA       TCGA-KK-A8IB 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KK-A8IC       TCGA-KK-A8ID       TCGA-KK-A8IF       TCGA-KK-A8IH 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-KK-A8II       TCGA-KK-A8IJ       TCGA-M7-A71Y       TCGA-M7-A71Z 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-M7-A721       TCGA-M7-A722       TCGA-M7-A723       TCGA-M7-A724 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-M7-A725       TCGA-QU-A6IN       TCGA-QU-A6IP       TCGA-SU-A7E7 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-TK-A8OK       TCGA-TP-A8TT       TCGA-TP-A8TV       TCGA-V1-A8MF 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-V1-A8MJ       TCGA-V1-A8MU       TCGA-V1-A8WL       TCGA-V1-A8X3 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-V1-A9O5       TCGA-V1-A9OH       TCGA-V1-A9OL       TCGA-V1-A9OQ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-V1-A9OT       TCGA-V1-A9OX       TCGA-V1-A9OY       TCGA-V1-A9Z7 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-V1-A9Z8       TCGA-V1-A9Z9       TCGA-V1-A9ZG       TCGA-V1-A9ZI 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-V1-A9ZR       TCGA-VN-A88I       TCGA-VN-A88K       TCGA-VN-A88L 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-VN-A88P       TCGA-VP-A875       TCGA-VP-A878       TCGA-VP-A87E 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-VP-A87J       TCGA-VP-A87K       TCGA-VP-AA1N       TCGA-WW-A8ZI 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-X4-A8KQ       TCGA-XA-A8JR       TCGA-Y6-A8TL       TCGA-Y6-A9XI 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-YJ-A8SW       TCGA-YL-A8HJ       TCGA-YL-A8HK       TCGA-YL-A8HL 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-YL-A8HM       TCGA-YL-A8HO       TCGA-YL-A8S8       TCGA-YL-A8S9 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-YL-A8SA       TCGA-YL-A8SC       TCGA-YL-A8SF       TCGA-YL-A8SH 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-YL-A8SI       TCGA-YL-A8SJ       TCGA-YL-A8SK       TCGA-YL-A8SL 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-YL-A8SP       TCGA-YL-A8SQ       TCGA-YL-A8SR       TCGA-YL-A9WI 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-YL-A9WJ       TCGA-YL-A9WK       TCGA-YL-A9WL       TCGA-YL-A9WX 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-YL-A9WY       TCGA-ZG-A8QW       TCGA-ZG-A8QX       TCGA-ZG-A8QY 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ZG-A8QZ       TCGA-ZG-A9KY       TCGA-ZG-A9L0       TCGA-ZG-A9L1 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ZG-A9L4       TCGA-ZG-A9L5       TCGA-ZG-A9L6       TCGA-ZG-A9L9 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ZG-A9LB       TCGA-ZG-A9LM       TCGA-ZG-A9LS       TCGA-ZG-A9LU 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ZG-A9LY       TCGA-ZG-A9LZ       TCGA-ZG-A9M4       TCGA-ZG-A9MC 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ZG-A9N3       TCGA-ZG-A9NI 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        0      1      2      2
  GAGE2A WILD-TYPE     96    141    149    106
D11V5, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              0               96
  CLUS_2              1              141
  CLUS_3              2              149
  CLUS_4              2              106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        3      1      1
  GAGE2A WILD-TYPE    170    207    115
D11V6, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              3              170
  CLUS_2              1              207
  CLUS_3              1              115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        2      0      2      1
  GAGE2A WILD-TYPE    211     71    122     85
D11V7, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              2              211
  CLUS_2              0               71
  CLUS_3              2              122
  CLUS_4              1               85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAGE2A MUTATED        3      0      0      2      0
  GAGE2A WILD-TYPE    145     98     59    131     56
D11V8, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              3              145
  CLUS_2              0               98
  CLUS_3              0               59
  CLUS_4              2              131
  CLUS_5              0               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        2      0      0      1
  GAGE2A WILD-TYPE     63     93     78     83
D11V9, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              2               63
  CLUS_2              0               93
  CLUS_3              0               78
  CLUS_4              1               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAGE2A MUTATED        1      1      0      1      0
  GAGE2A WILD-TYPE     74     87     69     22     65
D11V10, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1               74
  CLUS_2              1               87
  CLUS_3              0               69
  CLUS_4              1               22
  CLUS_5              0               65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = TNRC18 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        1      0      2      6
  TNRC18 WILD-TYPE    107     91     96    189
D12V1, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              1              107
  CLUS_2              0               91
  CLUS_3              2               96
  CLUS_4              6              189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        1      3      2      3
  TNRC18 WILD-TYPE    160    137    124     68
D12V2, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              1              160
  CLUS_2              3              137
  CLUS_3              2              124
  CLUS_4              3               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNRC18 MUTATED        2      0      1      0      0      1
  TNRC18 WILD-TYPE    104     51     44     53     58     38
D12V3, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               51
  CLUS_3              1               44
  CLUS_4              0               53
  CLUS_5              0               58
  CLUS_6              1               38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        1      3      0      0
  TNRC18 WILD-TYPE     74    111     93     70
D12V4, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              3              111
  CLUS_3              0               93
  CLUS_4              0               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        3      2      3      1
  TNRC18 WILD-TYPE     93    140    148    107
D12V5, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              3               93
  CLUS_2              2              140
  CLUS_3              3              148
  CLUS_4              1              107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        2      4      3
  TNRC18 WILD-TYPE    171    204    113
D12V6, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              2              171
  CLUS_2              4              204
  CLUS_3              3              113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        6      0      1      2
  TNRC18 WILD-TYPE    207     71    123     84
D12V7, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              6              207
  CLUS_2              0               71
  CLUS_3              1              123
  CLUS_4              2               84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC18 MUTATED        1      1      2      5      0
  TNRC18 WILD-TYPE    147     97     57    128     56
D12V8, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              1              147
  CLUS_2              1               97
  CLUS_3              2               57
  CLUS_4              5              128
  CLUS_5              0               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        0      3      2      3
  TNRC18 WILD-TYPE     65     90     76     81
D12V9, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              0               65
  CLUS_2              3               90
  CLUS_3              2               76
  CLUS_4              3               81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC18 MUTATED        1      3      2      0      2
  TNRC18 WILD-TYPE     74     85     67     23     63
D12V10, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              3               85
  CLUS_3              2               67
  CLUS_4              0               23
  CLUS_5              2               63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AGAP6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP6 MUTATED        1      1      1      2
  AGAP6 WILD-TYPE    107     90     97    193
D13V1, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             1             107
  CLUS_2             1              90
  CLUS_3             1              97
  CLUS_4             2             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP6 MUTATED        3      1      1      0
  AGAP6 WILD-TYPE    158    139    125     71
D13V2, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             3             158
  CLUS_2             1             139
  CLUS_3             1             125
  CLUS_4             0              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AGAP6 MUTATED        1      0      0      2      1      0
  AGAP6 WILD-TYPE    105     51     45     51     57     39
D13V3, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              51
  CLUS_3             0              45
  CLUS_4             2              51
  CLUS_5             1              57
  CLUS_6             0              39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP6 MUTATED        1      0      1      2
  AGAP6 WILD-TYPE     74    114     92     68
D13V4, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             0             114
  CLUS_3             1              92
  CLUS_4             2              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP6 MUTATED        2      1      0      2
  AGAP6 WILD-TYPE     94    141    151    106
D13V5, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             2              94
  CLUS_2             1             141
  CLUS_3             0             151
  CLUS_4             2             106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP6 MUTATED        3      1      1
  AGAP6 WILD-TYPE    170    207    115
D13V6, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             3             170
  CLUS_2             1             207
  CLUS_3             1             115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP6 MUTATED        2      1      2      0
  AGAP6 WILD-TYPE    211     70    122     86
D13V7, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             2             211
  CLUS_2             1              70
  CLUS_3             2             122
  CLUS_4             0              86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGAP6 MUTATED        1      2      1      0      1
  AGAP6 WILD-TYPE    147     96     58    133     55
D13V8, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             1             147
  CLUS_2             2              96
  CLUS_3             1              58
  CLUS_4             0             133
  CLUS_5             1              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP6 MUTATED        2      1      1      0
  AGAP6 WILD-TYPE     63     92     77     84
D13V9, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             2              63
  CLUS_2             1              92
  CLUS_3             1              77
  CLUS_4             0              84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGAP6 MUTATED        1      1      1      0      1
  AGAP6 WILD-TYPE     74     87     68     23     64
D13V10, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             1              87
  CLUS_3             1              68
  CLUS_4             0              23
  CLUS_5             1              64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = IDH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        1      1      2      2
  IDH1 WILD-TYPE    107     90     96    193
D14V1, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            1            107
  CLUS_2            1             90
  CLUS_3            2             96
  CLUS_4            2            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        0      5      0      1
  IDH1 WILD-TYPE    161    135    126     70
D14V2, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0            161
  CLUS_2            5            135
  CLUS_3            0            126
  CLUS_4            1             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IDH1 MUTATED        1      1      0      2      0      0
  IDH1 WILD-TYPE    105     50     45     51     58     39
D14V3, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            1             50
  CLUS_3            0             45
  CLUS_4            2             51
  CLUS_5            0             58
  CLUS_6            0             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        2      0      1      1
  IDH1 WILD-TYPE     73    114     92     69
D14V4, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            2             73
  CLUS_2            0            114
  CLUS_3            1             92
  CLUS_4            1             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        2      0      4      0
  IDH1 WILD-TYPE     94    142    147    108
D14V5, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            2             94
  CLUS_2            0            142
  CLUS_3            4            147
  CLUS_4            0            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        0      6      0
  IDH1 WILD-TYPE    173    202    116
D14V6, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0            173
  CLUS_2            6            202
  CLUS_3            0            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        3      2      0      1
  IDH1 WILD-TYPE    210     69    124     85
D14V7, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            3            210
  CLUS_2            2             69
  CLUS_3            0            124
  CLUS_4            1             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDH1 MUTATED        0      3      0      3      0
  IDH1 WILD-TYPE    148     95     59    130     56
D14V8, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0            148
  CLUS_2            3             95
  CLUS_3            0             59
  CLUS_4            3            130
  CLUS_5            0             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        0      2      2      1
  IDH1 WILD-TYPE     65     91     76     83
D14V9, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             65
  CLUS_2            2             91
  CLUS_3            2             76
  CLUS_4            1             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDH1 MUTATED        0      2      3      0      0
  IDH1 WILD-TYPE     75     86     66     23     65
D14V10, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             75
  CLUS_2            2             86
  CLUS_3            3             66
  CLUS_4            0             23
  CLUS_5            0             65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = GATA6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA6 MUTATED        1      1      1      1
  GATA6 WILD-TYPE    107     90     97    194
D15V1, multiclass
        clus
vv       GATA6 MUTATED GATA6 WILD-TYPE
  CLUS_1             1             107
  CLUS_2             1              90
  CLUS_3             1              97
  CLUS_4             1             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA6 MUTATED        1      2      0      1
  GATA6 WILD-TYPE    160    138    126     70
D15V2, multiclass
        clus
vv       GATA6 MUTATED GATA6 WILD-TYPE
  CLUS_1             1             160
  CLUS_2             2             138
  CLUS_3             0             126
  CLUS_4             1              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GATA6 MUTATED        0      0      1      0      0      0
  GATA6 WILD-TYPE    106     51     44     53     58     39
D15V3, multiclass
[1] "Remove cluster labels:" "GATA6 MUTATED"         
clus
  GATA6 MUTATED GATA6 WILD-TYPE 
              1             351 
     TCGA-2A-A8VL      TCGA-2A-A8VO      TCGA-2A-A8VT      TCGA-2A-A8VV 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-2A-A8VX      TCGA-2A-A8W1      TCGA-2A-A8W3      TCGA-2A-AAYF 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-2A-AAYO      TCGA-2A-AAYU      TCGA-4L-AA1F      TCGA-CH-5737 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5740      TCGA-CH-5741 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-CH-5743      TCGA-CH-5744      TCGA-CH-5745      TCGA-CH-5748 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5751      TCGA-CH-5752      TCGA-CH-5753 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-CH-5754      TCGA-CH-5761      TCGA-CH-5762      TCGA-CH-5763 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5765      TCGA-CH-5766      TCGA-CH-5767 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-CH-5768      TCGA-CH-5769      TCGA-CH-5771      TCGA-CH-5772 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-CH-5788      TCGA-CH-5789      TCGA-CH-5790      TCGA-CH-5791 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494      TCGA-EJ-5495 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-5496      TCGA-EJ-5497      TCGA-EJ-5498      TCGA-EJ-5499 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-5501      TCGA-EJ-5502      TCGA-EJ-5503      TCGA-EJ-5504 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-5505      TCGA-EJ-5506      TCGA-EJ-5507      TCGA-EJ-5508 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-5509      TCGA-EJ-5510      TCGA-EJ-5511      TCGA-EJ-5512 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5515      TCGA-EJ-5516      TCGA-EJ-5517 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-5518      TCGA-EJ-5519      TCGA-EJ-5521      TCGA-EJ-5522 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-5530      TCGA-EJ-5531      TCGA-EJ-5532      TCGA-EJ-5542 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-7115      TCGA-EJ-7125      TCGA-EJ-7218      TCGA-EJ-7312 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-7314      TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7318 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-7321      TCGA-EJ-7325      TCGA-EJ-7328      TCGA-EJ-7330 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-7331      TCGA-EJ-7781      TCGA-EJ-7782      TCGA-EJ-7783 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-7784      TCGA-EJ-7785      TCGA-EJ-7786      TCGA-EJ-7788 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-7789      TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468      TCGA-EJ-8469 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-8470      TCGA-EJ-8474      TCGA-EJ-A46B      TCGA-EJ-A46D 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-A46E      TCGA-EJ-A46F      TCGA-EJ-A46G      TCGA-EJ-A65B 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-A65D      TCGA-EJ-A65E      TCGA-EJ-A65F      TCGA-EJ-A65J 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-A65M      TCGA-EJ-A6RA      TCGA-EJ-A6RC      TCGA-EJ-A7NF 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-A7NG      TCGA-EJ-A7NH      TCGA-EJ-A7NJ      TCGA-EJ-A7NK 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-A7NM      TCGA-EJ-A7NN      TCGA-EJ-A8FN      TCGA-EJ-A8FO 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-A8FS      TCGA-EJ-A8FU      TCGA-EJ-AB20      TCGA-EJ-AB27 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-FC-7708      TCGA-FC-7961      TCGA-FC-A4JI      TCGA-FC-A5OB 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-FC-A66V      TCGA-FC-A6HD      TCGA-FC-A8O0      TCGA-G9-6329 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-6338      TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6343 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-6347      TCGA-G9-6351      TCGA-G9-6353      TCGA-G9-6356 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-6361      TCGA-G9-6362      TCGA-G9-6363      TCGA-G9-6364 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-6365      TCGA-G9-6366      TCGA-G9-6367      TCGA-G9-6370 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-6371      TCGA-G9-6373      TCGA-G9-6377      TCGA-G9-6378 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-6379      TCGA-G9-6384      TCGA-G9-6494      TCGA-G9-6496 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-6498      TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7521 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-7522      TCGA-G9-7523      TCGA-G9-7525      TCGA-G9-A9S0 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-A9S4      TCGA-G9-A9S7      TCGA-H9-7775      TCGA-H9-A6BX 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-H9-A6BY      TCGA-HC-7077      TCGA-HC-7079      TCGA-HC-7081 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-HC-7210      TCGA-HC-7211      TCGA-HC-7212      TCGA-HC-7213 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-HC-7232      TCGA-HC-7233      TCGA-HC-7736      TCGA-HC-7740 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-HC-7744      TCGA-HC-7748      TCGA-HC-7817      TCGA-HC-8264 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-HC-A76X      TCGA-HI-7168      TCGA-HI-7169      TCGA-HI-7170 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-HI-7171      TCGA-J4-8198      TCGA-J4-8200      TCGA-J4-A67K 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-J4-A67M      TCGA-J4-A67N      TCGA-J4-A67O      TCGA-J4-A67Q 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-J4-A67R      TCGA-J4-A67T      TCGA-J4-A6M7      TCGA-J4-A83I 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-J4-A83J      TCGA-J4-A83N      TCGA-J9-A52C      TCGA-J9-A52E 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-J9-A8CK      TCGA-J9-A8CM      TCGA-J9-A8CN      TCGA-J9-A8CP 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KC-A4BL      TCGA-KC-A4BN      TCGA-KC-A4BO      TCGA-KC-A4BR 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KC-A4BV      TCGA-KC-A7F3      TCGA-KC-A7F5      TCGA-KC-A7F6 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KC-A7FA      TCGA-KC-A7FD      TCGA-KC-A7FE      TCGA-KK-A59V 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KK-A59X      TCGA-KK-A59Y      TCGA-KK-A59Z      TCGA-KK-A5A1 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KK-A6E0      TCGA-KK-A6E1      TCGA-KK-A6E2      TCGA-KK-A6E3 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KK-A6E4      TCGA-KK-A6E8      TCGA-KK-A7AP      TCGA-KK-A7AU 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KK-A7AZ      TCGA-KK-A7B0      TCGA-KK-A7B1      TCGA-KK-A7B2 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KK-A7B3      TCGA-KK-A7B4      TCGA-KK-A8I4      TCGA-KK-A8I5 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KK-A8I6      TCGA-KK-A8I7      TCGA-KK-A8I8      TCGA-KK-A8IA 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KK-A8IB      TCGA-KK-A8IC      TCGA-KK-A8ID      TCGA-KK-A8IF 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KK-A8IH      TCGA-KK-A8II      TCGA-KK-A8IJ      TCGA-M7-A71Y 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-M7-A71Z      TCGA-M7-A720      TCGA-M7-A721      TCGA-M7-A722 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-M7-A723      TCGA-M7-A724      TCGA-M7-A725      TCGA-QU-A6IN 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-QU-A6IP      TCGA-SU-A7E7      TCGA-TK-A8OK      TCGA-TP-A8TT 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-TP-A8TV      TCGA-V1-A8MF      TCGA-V1-A8MJ      TCGA-V1-A8MU 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-V1-A8WL      TCGA-V1-A8X3      TCGA-V1-A9O5      TCGA-V1-A9OH 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-V1-A9OL      TCGA-V1-A9OQ      TCGA-V1-A9OT      TCGA-V1-A9OX 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-V1-A9OY      TCGA-V1-A9Z7      TCGA-V1-A9Z8      TCGA-V1-A9ZG 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-V1-A9ZI      TCGA-V1-A9ZR      TCGA-VN-A88I      TCGA-VN-A88K 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A875      TCGA-VP-A878 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-VP-A87E      TCGA-VP-A87J      TCGA-VP-A87K      TCGA-VP-AA1N 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-WW-A8ZI      TCGA-X4-A8KQ      TCGA-XA-A8JR      TCGA-Y6-A8TL 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-Y6-A9XI      TCGA-YJ-A8SW      TCGA-YL-A8HJ      TCGA-YL-A8HK 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-YL-A8HL      TCGA-YL-A8HM      TCGA-YL-A8HO      TCGA-YL-A8S8 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-YL-A8S9      TCGA-YL-A8SA      TCGA-YL-A8SC      TCGA-YL-A8SF 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-YL-A8SH      TCGA-YL-A8SI      TCGA-YL-A8SJ      TCGA-YL-A8SK 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-YL-A8SL      TCGA-YL-A8SP      TCGA-YL-A8SQ      TCGA-YL-A8SR 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-YL-A9WI      TCGA-YL-A9WJ      TCGA-YL-A9WK      TCGA-YL-A9WL 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-YL-A9WX      TCGA-YL-A9WY      TCGA-ZG-A8QW      TCGA-ZG-A8QX 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-ZG-A8QY      TCGA-ZG-A8QZ      TCGA-ZG-A9KY      TCGA-ZG-A9L0 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-ZG-A9L1      TCGA-ZG-A9L4      TCGA-ZG-A9L5      TCGA-ZG-A9L6 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-ZG-A9L9      TCGA-ZG-A9LB      TCGA-ZG-A9LM      TCGA-ZG-A9LS 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-ZG-A9LU      TCGA-ZG-A9LY      TCGA-ZG-A9LZ      TCGA-ZG-A9M4 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-ZG-A9MC      TCGA-ZG-A9N3      TCGA-ZG-A9NI 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA6 MUTATED        0      1      0      0
  GATA6 WILD-TYPE     75    113     93     70
D15V4, multiclass
[1] "Remove cluster labels:" "GATA6 MUTATED"         
clus
  GATA6 MUTATED GATA6 WILD-TYPE 
              1             351 
     TCGA-2A-A8VL      TCGA-2A-A8VO      TCGA-2A-A8VT      TCGA-2A-A8VV 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-2A-A8VX      TCGA-2A-A8W1      TCGA-2A-A8W3      TCGA-2A-AAYF 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-2A-AAYO      TCGA-2A-AAYU      TCGA-4L-AA1F      TCGA-CH-5737 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5740      TCGA-CH-5741 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-CH-5743      TCGA-CH-5744      TCGA-CH-5745      TCGA-CH-5748 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5751      TCGA-CH-5752      TCGA-CH-5753 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-CH-5754      TCGA-CH-5761      TCGA-CH-5762      TCGA-CH-5763 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5765      TCGA-CH-5766      TCGA-CH-5767 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-CH-5768      TCGA-CH-5769      TCGA-CH-5771      TCGA-CH-5772 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-CH-5788      TCGA-CH-5789      TCGA-CH-5790      TCGA-CH-5791 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494      TCGA-EJ-5495 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-5496      TCGA-EJ-5497      TCGA-EJ-5498      TCGA-EJ-5499 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-5501      TCGA-EJ-5502      TCGA-EJ-5503      TCGA-EJ-5504 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-5505      TCGA-EJ-5506      TCGA-EJ-5507      TCGA-EJ-5508 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-5509      TCGA-EJ-5510      TCGA-EJ-5511      TCGA-EJ-5512 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5515      TCGA-EJ-5516      TCGA-EJ-5517 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-5518      TCGA-EJ-5519      TCGA-EJ-5521      TCGA-EJ-5522 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-5530      TCGA-EJ-5531      TCGA-EJ-5532      TCGA-EJ-5542 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-7115      TCGA-EJ-7125      TCGA-EJ-7218      TCGA-EJ-7312 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-7314      TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7318 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-7321      TCGA-EJ-7325      TCGA-EJ-7328      TCGA-EJ-7330 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-7331      TCGA-EJ-7781      TCGA-EJ-7782      TCGA-EJ-7783 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-7784      TCGA-EJ-7785      TCGA-EJ-7786      TCGA-EJ-7788 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-7789      TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468      TCGA-EJ-8469 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-8470      TCGA-EJ-8474      TCGA-EJ-A46B      TCGA-EJ-A46D 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-A46E      TCGA-EJ-A46F      TCGA-EJ-A46G      TCGA-EJ-A65B 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-A65D      TCGA-EJ-A65E      TCGA-EJ-A65F      TCGA-EJ-A65J 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-A65M      TCGA-EJ-A6RA      TCGA-EJ-A6RC      TCGA-EJ-A7NF 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-A7NG      TCGA-EJ-A7NH      TCGA-EJ-A7NJ      TCGA-EJ-A7NK 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-A7NM      TCGA-EJ-A7NN      TCGA-EJ-A8FN      TCGA-EJ-A8FO 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-EJ-A8FS      TCGA-EJ-A8FU      TCGA-EJ-AB20      TCGA-EJ-AB27 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-FC-7708      TCGA-FC-7961      TCGA-FC-A4JI      TCGA-FC-A5OB 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-FC-A66V      TCGA-FC-A6HD      TCGA-FC-A8O0      TCGA-G9-6329 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-6338      TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6343 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-6347      TCGA-G9-6351      TCGA-G9-6353      TCGA-G9-6356 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-6361      TCGA-G9-6362      TCGA-G9-6363      TCGA-G9-6364 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-6365      TCGA-G9-6366      TCGA-G9-6367      TCGA-G9-6370 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-6371      TCGA-G9-6373      TCGA-G9-6377      TCGA-G9-6378 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-6379      TCGA-G9-6384      TCGA-G9-6494      TCGA-G9-6496 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-6498      TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7521 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-7522      TCGA-G9-7523      TCGA-G9-7525      TCGA-G9-A9S0 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-G9-A9S4      TCGA-G9-A9S7      TCGA-H9-7775      TCGA-H9-A6BX 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-H9-A6BY      TCGA-HC-7077      TCGA-HC-7079      TCGA-HC-7081 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-HC-7210      TCGA-HC-7211      TCGA-HC-7212      TCGA-HC-7213 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-HC-7232      TCGA-HC-7233      TCGA-HC-7736      TCGA-HC-7740 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-HC-7744      TCGA-HC-7748      TCGA-HC-7817      TCGA-HC-8264 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-HC-A76X      TCGA-HI-7168      TCGA-HI-7169      TCGA-HI-7170 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-HI-7171      TCGA-J4-8198      TCGA-J4-8200      TCGA-J4-A67K 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-J4-A67M      TCGA-J4-A67N      TCGA-J4-A67O      TCGA-J4-A67Q 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-J4-A67R      TCGA-J4-A67T      TCGA-J4-A6M7      TCGA-J4-A83I 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-J4-A83J      TCGA-J4-A83N      TCGA-J9-A52C      TCGA-J9-A52E 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-J9-A8CK      TCGA-J9-A8CM      TCGA-J9-A8CN      TCGA-J9-A8CP 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KC-A4BL      TCGA-KC-A4BN      TCGA-KC-A4BO      TCGA-KC-A4BR 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KC-A4BV      TCGA-KC-A7F3      TCGA-KC-A7F5      TCGA-KC-A7F6 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KC-A7FA      TCGA-KC-A7FD      TCGA-KC-A7FE      TCGA-KK-A59V 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KK-A59X      TCGA-KK-A59Y      TCGA-KK-A59Z      TCGA-KK-A5A1 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KK-A6E0      TCGA-KK-A6E1      TCGA-KK-A6E2      TCGA-KK-A6E3 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KK-A6E4      TCGA-KK-A6E8      TCGA-KK-A7AP      TCGA-KK-A7AU 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KK-A7AZ      TCGA-KK-A7B0      TCGA-KK-A7B1      TCGA-KK-A7B2 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KK-A7B3      TCGA-KK-A7B4      TCGA-KK-A8I4      TCGA-KK-A8I5 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KK-A8I6      TCGA-KK-A8I7      TCGA-KK-A8I8      TCGA-KK-A8IA 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KK-A8IB      TCGA-KK-A8IC      TCGA-KK-A8ID      TCGA-KK-A8IF 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-KK-A8IH      TCGA-KK-A8II      TCGA-KK-A8IJ      TCGA-M7-A71Y 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-M7-A71Z      TCGA-M7-A720      TCGA-M7-A721      TCGA-M7-A722 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-M7-A723      TCGA-M7-A724      TCGA-M7-A725      TCGA-QU-A6IN 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-QU-A6IP      TCGA-SU-A7E7      TCGA-TK-A8OK      TCGA-TP-A8TT 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-TP-A8TV      TCGA-V1-A8MF      TCGA-V1-A8MJ      TCGA-V1-A8MU 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-V1-A8WL      TCGA-V1-A8X3      TCGA-V1-A9O5      TCGA-V1-A9OH 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-V1-A9OL      TCGA-V1-A9OQ      TCGA-V1-A9OT      TCGA-V1-A9OX 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-V1-A9OY      TCGA-V1-A9Z7      TCGA-V1-A9Z8      TCGA-V1-A9ZG 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-V1-A9ZI      TCGA-V1-A9ZR      TCGA-VN-A88I      TCGA-VN-A88K 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-VN-A88L      TCGA-VN-A88P      TCGA-VP-A875      TCGA-VP-A878 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-VP-A87E      TCGA-VP-A87J      TCGA-VP-A87K      TCGA-VP-AA1N 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-WW-A8ZI      TCGA-X4-A8KQ      TCGA-XA-A8JR      TCGA-Y6-A8TL 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-Y6-A9XI      TCGA-YJ-A8SW      TCGA-YL-A8HJ      TCGA-YL-A8HK 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-YL-A8HL      TCGA-YL-A8HM      TCGA-YL-A8HO      TCGA-YL-A8S8 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-YL-A8S9      TCGA-YL-A8SA      TCGA-YL-A8SC      TCGA-YL-A8SF 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-YL-A8SH      TCGA-YL-A8SI      TCGA-YL-A8SJ      TCGA-YL-A8SK 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-YL-A8SL      TCGA-YL-A8SP      TCGA-YL-A8SQ      TCGA-YL-A8SR 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-YL-A9WI      TCGA-YL-A9WJ      TCGA-YL-A9WK      TCGA-YL-A9WL 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-YL-A9WX      TCGA-YL-A9WY      TCGA-ZG-A8QW      TCGA-ZG-A8QX 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-ZG-A8QY      TCGA-ZG-A8QZ      TCGA-ZG-A9KY      TCGA-ZG-A9L0 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-ZG-A9L1      TCGA-ZG-A9L4      TCGA-ZG-A9L5      TCGA-ZG-A9L6 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-ZG-A9L9      TCGA-ZG-A9LB      TCGA-ZG-A9LM      TCGA-ZG-A9LS 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-ZG-A9LU      TCGA-ZG-A9LY      TCGA-ZG-A9LZ      TCGA-ZG-A9M4 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
     TCGA-ZG-A9MC      TCGA-ZG-A9N3      TCGA-ZG-A9NI 
"GATA6 WILD-TYPE" "GATA6 WILD-TYPE" "GATA6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA6 MUTATED        0      1      1      2
  GATA6 WILD-TYPE     96    141    150    106
D15V5, multiclass
        clus
vv       GATA6 MUTATED GATA6 WILD-TYPE
  CLUS_1             0              96
  CLUS_2             1             141
  CLUS_3             1             150
  CLUS_4             2             106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GATA6 MUTATED        2      1      1
  GATA6 WILD-TYPE    171    207    115
D15V6, multiclass
        clus
vv       GATA6 MUTATED GATA6 WILD-TYPE
  CLUS_1             2             171
  CLUS_2             1             207
  CLUS_3             1             115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA6 MUTATED        2      0      1      1
  GATA6 WILD-TYPE    211     71    123     85
D15V7, multiclass
        clus
vv       GATA6 MUTATED GATA6 WILD-TYPE
  CLUS_1             2             211
  CLUS_2             0              71
  CLUS_3             1             123
  CLUS_4             1              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GATA6 MUTATED        2      0      0      1      1
  GATA6 WILD-TYPE    146     98     59    132     55
D15V8, multiclass
        clus
vv       GATA6 MUTATED GATA6 WILD-TYPE
  CLUS_1             2             146
  CLUS_2             0              98
  CLUS_3             0              59
  CLUS_4             1             132
  CLUS_5             1              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA6 MUTATED        1      1      0      2
  GATA6 WILD-TYPE     64     92     78     82
D15V9, multiclass
        clus
vv       GATA6 MUTATED GATA6 WILD-TYPE
  CLUS_1             1              64
  CLUS_2             1              92
  CLUS_3             0              78
  CLUS_4             2              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GATA6 MUTATED        1      2      0      0      1
  GATA6 WILD-TYPE     74     86     69     23     64
D15V10, multiclass
        clus
vv       GATA6 MUTATED GATA6 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             2              86
  CLUS_3             0              69
  CLUS_4             0              23
  CLUS_5             1              64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = SMG7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG7 MUTATED        0      1      5      2
  SMG7 WILD-TYPE    108     90     93    193
D16V1, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            0            108
  CLUS_2            1             90
  CLUS_3            5             93
  CLUS_4            2            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG7 MUTATED        0      5      2      1
  SMG7 WILD-TYPE    161    135    124     70
D16V2, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            0            161
  CLUS_2            5            135
  CLUS_3            2            124
  CLUS_4            1             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMG7 MUTATED        2      0      0      1      1      2
  SMG7 WILD-TYPE    104     51     45     52     57     37
D16V3, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            0             51
  CLUS_3            0             45
  CLUS_4            1             52
  CLUS_5            1             57
  CLUS_6            2             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG7 MUTATED        1      1      3      1
  SMG7 WILD-TYPE     74    113     90     69
D16V4, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            1             74
  CLUS_2            1            113
  CLUS_3            3             90
  CLUS_4            1             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG7 MUTATED        2      0      6      0
  SMG7 WILD-TYPE     94    142    145    108
D16V5, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            2             94
  CLUS_2            0            142
  CLUS_3            6            145
  CLUS_4            0            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG7 MUTATED        0      8      0
  SMG7 WILD-TYPE    173    200    116
D16V6, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            0            173
  CLUS_2            8            200
  CLUS_3            0            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG7 MUTATED        5      1      0      2
  SMG7 WILD-TYPE    208     70    124     84
D16V7, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            5            208
  CLUS_2            1             70
  CLUS_3            0            124
  CLUS_4            2             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMG7 MUTATED        0      2      0      4      2
  SMG7 WILD-TYPE    148     96     59    129     54
D16V8, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            0            148
  CLUS_2            2             96
  CLUS_3            0             59
  CLUS_4            4            129
  CLUS_5            2             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG7 MUTATED        1      2      1      1
  SMG7 WILD-TYPE     64     91     77     83
D16V9, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            1             64
  CLUS_2            2             91
  CLUS_3            1             77
  CLUS_4            1             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMG7 MUTATED        0      3      0      0      2
  SMG7 WILD-TYPE     75     85     69     23     63
D16V10, multiclass
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  CLUS_1            0             75
  CLUS_2            3             85
  CLUS_3            0             69
  CLUS_4            0             23
  CLUS_5            2             63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = CNTNAP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP1 MUTATED        0      1      1      6
  CNTNAP1 WILD-TYPE    108     90     97    189
D17V1, multiclass
        clus
vv       CNTNAP1 MUTATED CNTNAP1 WILD-TYPE
  CLUS_1               0               108
  CLUS_2               1                90
  CLUS_3               1                97
  CLUS_4               6               189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP1 MUTATED        1      5      1      2
  CNTNAP1 WILD-TYPE    160    135    125     69
D17V2, multiclass
        clus
vv       CNTNAP1 MUTATED CNTNAP1 WILD-TYPE
  CLUS_1               1               160
  CLUS_2               5               135
  CLUS_3               1               125
  CLUS_4               2                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNTNAP1 MUTATED        1      1      0      1      0      0
  CNTNAP1 WILD-TYPE    105     50     45     52     58     39
D17V3, multiclass
        clus
vv       CNTNAP1 MUTATED CNTNAP1 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               1                50
  CLUS_3               0                45
  CLUS_4               1                52
  CLUS_5               0                58
  CLUS_6               0                39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP1 MUTATED        1      1      1      0
  CNTNAP1 WILD-TYPE     74    113     92     70
D17V4, multiclass
        clus
vv       CNTNAP1 MUTATED CNTNAP1 WILD-TYPE
  CLUS_1               1                74
  CLUS_2               1               113
  CLUS_3               1                92
  CLUS_4               0                70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP1 MUTATED        1      1      4      3
  CNTNAP1 WILD-TYPE     95    141    147    105
D17V5, multiclass
        clus
vv       CNTNAP1 MUTATED CNTNAP1 WILD-TYPE
  CLUS_1               1                95
  CLUS_2               1               141
  CLUS_3               4               147
  CLUS_4               3               105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CNTNAP1 MUTATED        2      5      2
  CNTNAP1 WILD-TYPE    171    203    114
D17V6, multiclass
        clus
vv       CNTNAP1 MUTATED CNTNAP1 WILD-TYPE
  CLUS_1               2               171
  CLUS_2               5               203
  CLUS_3               2               114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP1 MUTATED        4      1      3      1
  CNTNAP1 WILD-TYPE    209     70    121     85
D17V7, multiclass
        clus
vv       CNTNAP1 MUTATED CNTNAP1 WILD-TYPE
  CLUS_1               4               209
  CLUS_2               1                70
  CLUS_3               3               121
  CLUS_4               1                85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNTNAP1 MUTATED        0      1      1      5      2
  CNTNAP1 WILD-TYPE    148     97     58    128     54
D17V8, multiclass
        clus
vv       CNTNAP1 MUTATED CNTNAP1 WILD-TYPE
  CLUS_1               0               148
  CLUS_2               1                97
  CLUS_3               1                58
  CLUS_4               5               128
  CLUS_5               2                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTNAP1 MUTATED        0      1      1      2
  CNTNAP1 WILD-TYPE     65     92     77     82
D17V9, multiclass
        clus
vv       CNTNAP1 MUTATED CNTNAP1 WILD-TYPE
  CLUS_1               0                65
  CLUS_2               1                92
  CLUS_3               1                77
  CLUS_4               2                82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNTNAP1 MUTATED        0      1      1      0      2
  CNTNAP1 WILD-TYPE     75     87     68     23     63
D17V10, multiclass
        clus
vv       CNTNAP1 MUTATED CNTNAP1 WILD-TYPE
  CLUS_1               0                75
  CLUS_2               1                87
  CLUS_3               1                68
  CLUS_4               0                23
  CLUS_5               2                63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = CDKN1B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN1B MUTATED        1      0      3      2
  CDKN1B WILD-TYPE    107     91     95    193
D18V1, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              1              107
  CLUS_2              0               91
  CLUS_3              3               95
  CLUS_4              2              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN1B MUTATED        0      3      1      2
  CDKN1B WILD-TYPE    161    137    125     69
D18V2, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              0              161
  CLUS_2              3              137
  CLUS_3              1              125
  CLUS_4              2               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDKN1B MUTATED        0      0      1      1      2      2
  CDKN1B WILD-TYPE    106     51     44     52     56     37
D18V3, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               51
  CLUS_3              1               44
  CLUS_4              1               52
  CLUS_5              2               56
  CLUS_6              2               37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN1B MUTATED        0      2      0      4
  CDKN1B WILD-TYPE     75    112     93     66
D18V4, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              0               75
  CLUS_2              2              112
  CLUS_3              0               93
  CLUS_4              4               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN1B MUTATED        2      2      2      0
  CDKN1B WILD-TYPE     94    140    149    108
D18V5, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              2               94
  CLUS_2              2              140
  CLUS_3              2              149
  CLUS_4              0              108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN1B MUTATED        0      5      1
  CDKN1B WILD-TYPE    173    203    115
D18V6, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              0              173
  CLUS_2              5              203
  CLUS_3              1              115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN1B MUTATED        3      2      0      1
  CDKN1B WILD-TYPE    210     69    124     85
D18V7, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              3              210
  CLUS_2              2               69
  CLUS_3              0              124
  CLUS_4              1               85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN1B MUTATED        0      3      0      3      0
  CDKN1B WILD-TYPE    148     95     59    130     56
D18V8, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              0              148
  CLUS_2              3               95
  CLUS_3              0               59
  CLUS_4              3              130
  CLUS_5              0               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN1B MUTATED        0      3      0      1
  CDKN1B WILD-TYPE     65     90     78     83
D18V9, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              0               65
  CLUS_2              3               90
  CLUS_3              0               78
  CLUS_4              1               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN1B MUTATED        0      2      1      0      1
  CDKN1B WILD-TYPE     75     86     68     23     64
D18V10, multiclass
        clus
vv       CDKN1B MUTATED CDKN1B WILD-TYPE
  CLUS_1              0               75
  CLUS_2              2               86
  CLUS_3              1               68
  CLUS_4              0               23
  CLUS_5              1               64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = EOMES MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EOMES MUTATED        2      2      0      1
  EOMES WILD-TYPE    106     89     98    194
D19V1, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             2             106
  CLUS_2             2              89
  CLUS_3             0              98
  CLUS_4             1             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EOMES MUTATED        3      2      0      0
  EOMES WILD-TYPE    158    138    126     71
D19V2, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             3             158
  CLUS_2             2             138
  CLUS_3             0             126
  CLUS_4             0              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EOMES MUTATED        1      1      0      1      0      1
  EOMES WILD-TYPE    105     50     45     52     58     38
D19V3, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             1             105
  CLUS_2             1              50
  CLUS_3             0              45
  CLUS_4             1              52
  CLUS_5             0              58
  CLUS_6             1              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EOMES MUTATED        1      0      3      0
  EOMES WILD-TYPE     74    114     90     70
D19V4, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             1              74
  CLUS_2             0             114
  CLUS_3             3              90
  CLUS_4             0              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EOMES MUTATED        1      2      1      1
  EOMES WILD-TYPE     95    140    150    107
D19V5, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             1              95
  CLUS_2             2             140
  CLUS_3             1             150
  CLUS_4             1             107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EOMES MUTATED        4      1      0
  EOMES WILD-TYPE    169    207    116
D19V6, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             4             169
  CLUS_2             1             207
  CLUS_3             0             116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EOMES MUTATED        2      2      1      0
  EOMES WILD-TYPE    211     69    123     86
D19V7, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             2             211
  CLUS_2             2              69
  CLUS_3             1             123
  CLUS_4             0              86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EOMES MUTATED        2      2      0      1      0
  EOMES WILD-TYPE    146     96     59    132     56
D19V8, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             2             146
  CLUS_2             2              96
  CLUS_3             0              59
  CLUS_4             1             132
  CLUS_5             0              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EOMES MUTATED        0      2      2      0
  EOMES WILD-TYPE     65     91     76     84
D19V9, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             0              65
  CLUS_2             2              91
  CLUS_3             2              76
  CLUS_4             0              84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EOMES MUTATED        1      1      1      1      0
  EOMES WILD-TYPE     74     87     68     22     65
D19V10, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             1              74
  CLUS_2             1              87
  CLUS_3             1              68
  CLUS_4             1              22
  CLUS_5             0              65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = NBPF1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF1 MUTATED        2      2      2      3
  NBPF1 WILD-TYPE    106     89     96    192
D20V1, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             2             106
  CLUS_2             2              89
  CLUS_3             2              96
  CLUS_4             3             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF1 MUTATED        2      5      0      2
  NBPF1 WILD-TYPE    159    135    126     69
D20V2, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             2             159
  CLUS_2             5             135
  CLUS_3             0             126
  CLUS_4             2              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NBPF1 MUTATED        2      1      0      1      0      1
  NBPF1 WILD-TYPE    104     50     45     52     58     38
D20V3, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              50
  CLUS_3             0              45
  CLUS_4             1              52
  CLUS_5             0              58
  CLUS_6             1              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF1 MUTATED        0      2      2      1
  NBPF1 WILD-TYPE     75    112     91     69
D20V4, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             0              75
  CLUS_2             2             112
  CLUS_3             2              91
  CLUS_4             1              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF1 MUTATED        3      1      4      1
  NBPF1 WILD-TYPE     93    141    147    107
D20V5, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             3              93
  CLUS_2             1             141
  CLUS_3             4             147
  CLUS_4             1             107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NBPF1 MUTATED        2      6      1
  NBPF1 WILD-TYPE    171    202    115
D20V6, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             2             171
  CLUS_2             6             202
  CLUS_3             1             115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF1 MUTATED        4      1      1      3
  NBPF1 WILD-TYPE    209     70    123     83
D20V7, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             4             209
  CLUS_2             1              70
  CLUS_3             1             123
  CLUS_4             3              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF1 MUTATED        1      2      0      4      2
  NBPF1 WILD-TYPE    147     96     59    129     54
D20V8, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             1             147
  CLUS_2             2              96
  CLUS_3             0              59
  CLUS_4             4             129
  CLUS_5             2              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF1 MUTATED        0      3      2      2
  NBPF1 WILD-TYPE     65     90     76     82
D20V9, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             0              65
  CLUS_2             3              90
  CLUS_3             2              76
  CLUS_4             2              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF1 MUTATED        0      4      2      0      1
  NBPF1 WILD-TYPE     75     84     67     23     64
D20V10, multiclass
        clus
vv       NBPF1 MUTATED NBPF1 WILD-TYPE
  CLUS_1             0              75
  CLUS_2             4              84
  CLUS_3             2              67
  CLUS_4             0              23
  CLUS_5             1              64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = LMOD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMOD2 MUTATED        2      2      1      1
  LMOD2 WILD-TYPE    106     89     97    194
D21V1, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             2             106
  CLUS_2             2              89
  CLUS_3             1              97
  CLUS_4             1             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMOD2 MUTATED        2      1      2      1
  LMOD2 WILD-TYPE    159    139    124     70
D21V2, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             2             159
  CLUS_2             1             139
  CLUS_3             2             124
  CLUS_4             1              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LMOD2 MUTATED        3      1      0      0      2      0
  LMOD2 WILD-TYPE    103     50     45     53     56     39
D21V3, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              50
  CLUS_3             0              45
  CLUS_4             0              53
  CLUS_5             2              56
  CLUS_6             0              39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMOD2 MUTATED        2      0      2      2
  LMOD2 WILD-TYPE     73    114     91     68
D21V4, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             0             114
  CLUS_3             2              91
  CLUS_4             2              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMOD2 MUTATED        2      3      1      0
  LMOD2 WILD-TYPE     94    139    150    108
D21V5, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             2              94
  CLUS_2             3             139
  CLUS_3             1             150
  CLUS_4             0             108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMOD2 MUTATED        1      2      3
  LMOD2 WILD-TYPE    172    206    113
D21V6, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             1             172
  CLUS_2             2             206
  CLUS_3             3             113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMOD2 MUTATED        1      2      2      1
  LMOD2 WILD-TYPE    212     69    122     85
D21V7, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             1             212
  CLUS_2             2              69
  CLUS_3             2             122
  CLUS_4             1              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LMOD2 MUTATED        1      2      1      1      1
  LMOD2 WILD-TYPE    147     96     58    132     55
D21V8, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             1             147
  CLUS_2             2              96
  CLUS_3             1              58
  CLUS_4             1             132
  CLUS_5             1              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMOD2 MUTATED        1      2      2      1
  LMOD2 WILD-TYPE     64     91     76     83
D21V9, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             1              64
  CLUS_2             2              91
  CLUS_3             2              76
  CLUS_4             1              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LMOD2 MUTATED        1      2      2      0      1
  LMOD2 WILD-TYPE     74     86     67     23     64
D21V10, multiclass
        clus
vv       LMOD2 MUTATED LMOD2 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             2              86
  CLUS_3             2              67
  CLUS_4             0              23
  CLUS_5             1              64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = EHHADH MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHHADH MUTATED        1      0      2      2
  EHHADH WILD-TYPE    107     91     96    193
D22V1, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              1              107
  CLUS_2              0               91
  CLUS_3              2               96
  CLUS_4              2              193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHHADH MUTATED        1      2      1      1
  EHHADH WILD-TYPE    160    138    125     70
D22V2, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              1              160
  CLUS_2              2              138
  CLUS_3              1              125
  CLUS_4              1               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EHHADH MUTATED        1      0      0      0      0      2
  EHHADH WILD-TYPE    105     51     45     53     58     37
D22V3, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               51
  CLUS_3              0               45
  CLUS_4              0               53
  CLUS_5              0               58
  CLUS_6              2               37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHHADH MUTATED        0      1      1      1
  EHHADH WILD-TYPE     75    113     92     69
D22V4, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              0               75
  CLUS_2              1              113
  CLUS_3              1               92
  CLUS_4              1               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHHADH MUTATED        0      2      1      2
  EHHADH WILD-TYPE     96    140    150    106
D22V5, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              0               96
  CLUS_2              2              140
  CLUS_3              1              150
  CLUS_4              2              106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EHHADH MUTATED        2      2      1
  EHHADH WILD-TYPE    171    206    115
D22V6, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              2              171
  CLUS_2              2              206
  CLUS_3              1              115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHHADH MUTATED        4      0      0      1
  EHHADH WILD-TYPE    209     71    124     85
D22V7, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              4              209
  CLUS_2              0               71
  CLUS_3              0              124
  CLUS_4              1               85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHHADH MUTATED        1      0      1      3      0
  EHHADH WILD-TYPE    147     98     58    130     56
D22V8, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              1              147
  CLUS_2              0               98
  CLUS_3              1               58
  CLUS_4              3              130
  CLUS_5              0               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHHADH MUTATED        0      1      0      1
  EHHADH WILD-TYPE     65     92     78     83
D22V9, multiclass
[1] "Remove cluster labels:" "EHHADH MUTATED"        
clus
  EHHADH MUTATED EHHADH WILD-TYPE 
               2              318 
      TCGA-2A-A8VL       TCGA-2A-A8VV       TCGA-2A-A8W3       TCGA-2A-AAYF 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-2A-AAYO       TCGA-2A-AAYU       TCGA-4L-AA1F       TCGA-CH-5737 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5741       TCGA-CH-5746 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5762       TCGA-CH-5763       TCGA-CH-5764 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-CH-5766       TCGA-CH-5769       TCGA-CH-5772       TCGA-CH-5789 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494       TCGA-EJ-5497 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-5504       TCGA-EJ-5506       TCGA-EJ-5512       TCGA-EJ-5514 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5522       TCGA-EJ-5524 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5542 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7115       TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7315       TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7328       TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7782 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7783       TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7788       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46G       TCGA-EJ-A46H 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A6RA 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A6RC       TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A7NM       TCGA-EJ-A8FN       TCGA-EJ-A8FO       TCGA-EJ-A8FP 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A8FU       TCGA-EJ-AB20       TCGA-EJ-AB27       TCGA-FC-7708 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-FC-7961       TCGA-FC-A8O0       TCGA-G9-6329       TCGA-G9-6333 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6336       TCGA-G9-6338       TCGA-G9-6339       TCGA-G9-6342 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6347       TCGA-G9-6351       TCGA-G9-6353       TCGA-G9-6354 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6361       TCGA-G9-6365       TCGA-G9-6369       TCGA-G9-6377 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6379       TCGA-G9-6498       TCGA-G9-6499       TCGA-G9-7509 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-7510       TCGA-G9-7519       TCGA-G9-7521       TCGA-G9-7522 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-7523       TCGA-G9-A9S0       TCGA-G9-A9S4       TCGA-G9-A9S7 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-H9-7775       TCGA-H9-A6BX       TCGA-HC-7075       TCGA-HC-7078 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7079       TCGA-HC-7081       TCGA-HC-7209       TCGA-HC-7210 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7212       TCGA-HC-7213       TCGA-HC-7230       TCGA-HC-7231 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7232       TCGA-HC-7233       TCGA-HC-7737       TCGA-HC-7740 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7742       TCGA-HC-7744       TCGA-HC-7747       TCGA-HC-7748 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7749       TCGA-HC-7750       TCGA-HC-7817       TCGA-HC-7818 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7820       TCGA-HC-7821       TCGA-HC-8258       TCGA-HC-8260 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-8261       TCGA-HC-8262       TCGA-HC-8264       TCGA-HC-8265 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-8266       TCGA-HC-A4ZV       TCGA-HC-A631       TCGA-HC-A632 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-A6AL       TCGA-HC-A6AN       TCGA-HC-A6AP       TCGA-HC-A6HX 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-A6HY       TCGA-HC-A76W       TCGA-HC-A8D0       TCGA-HC-A8D1 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-A9TE       TCGA-HC-A9TH       TCGA-HI-7168       TCGA-HI-7169 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HI-7170       TCGA-HI-7171       TCGA-J4-8198       TCGA-J4-8200 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J4-A67L       TCGA-J4-A67M       TCGA-J4-A67Q       TCGA-J4-A67R 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J4-A67T       TCGA-J4-A6G1       TCGA-J4-A6G3       TCGA-J4-A83I 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J4-A83J       TCGA-J4-A83K       TCGA-J4-A83L       TCGA-J4-A83M 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J4-AATV       TCGA-J4-AAU2       TCGA-J9-A52B       TCGA-J9-A52C 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J9-A52E       TCGA-J9-A8CK       TCGA-J9-A8CL       TCGA-J9-A8CM 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KC-A4BL       TCGA-KC-A4BO       TCGA-KC-A4BR       TCGA-KC-A4BV 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KC-A7F3       TCGA-KC-A7FA       TCGA-KC-A7FE       TCGA-KK-A59V 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A59Y       TCGA-KK-A59Z       TCGA-KK-A5A1       TCGA-KK-A6DY 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A6E0       TCGA-KK-A6E1       TCGA-KK-A6E2       TCGA-KK-A6E4 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A6E5       TCGA-KK-A6E7       TCGA-KK-A7AQ       TCGA-KK-A7B0 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A7B1       TCGA-KK-A7B2       TCGA-KK-A7B3       TCGA-KK-A7B4 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A8I5       TCGA-KK-A8I6       TCGA-KK-A8I7       TCGA-KK-A8I8 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A8I9       TCGA-KK-A8IA       TCGA-KK-A8IB       TCGA-KK-A8IC 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A8IG       TCGA-KK-A8IH       TCGA-KK-A8IJ       TCGA-KK-A8IL 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A8IM       TCGA-M7-A720       TCGA-M7-A723       TCGA-M7-A725 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-MG-AAMC       TCGA-QU-A6IM       TCGA-QU-A6IO       TCGA-QU-A6IP 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-TK-A8OK       TCGA-TP-A8TT       TCGA-V1-A8MG       TCGA-V1-A8MJ 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-V1-A8MK       TCGA-V1-A8MM       TCGA-V1-A8WL       TCGA-V1-A8WV 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-V1-A8WW       TCGA-V1-A8X3       TCGA-V1-A9O5       TCGA-V1-A9O7 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-V1-A9O9       TCGA-V1-A9OA       TCGA-V1-A9OH       TCGA-V1-A9OL 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-V1-A9OQ       TCGA-V1-A9OT       TCGA-V1-A9OX       TCGA-V1-A9Z7 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-V1-A9Z8       TCGA-V1-A9Z9       TCGA-V1-A9ZG       TCGA-V1-A9ZI 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-V1-A9ZK       TCGA-V1-A9ZR       TCGA-VN-A88I       TCGA-VN-A88K 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-VN-A88L       TCGA-VN-A88P       TCGA-VP-A872       TCGA-VP-A878 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-VP-A879       TCGA-VP-A87C       TCGA-VP-A87E       TCGA-VP-A87K 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-VP-AA1N       TCGA-X4-A8KQ       TCGA-X4-A8KS       TCGA-XA-A8JR 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-XJ-A83H       TCGA-XJ-A9DI       TCGA-XJ-A9DK       TCGA-XJ-A9DQ 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-XK-AAIV       TCGA-XK-AAIW       TCGA-XK-AAJ3       TCGA-XK-AAJA 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-XK-AAJT       TCGA-XK-AAJU       TCGA-XK-AAK1       TCGA-XQ-A8TB 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-Y6-A8TL       TCGA-Y6-A9XI       TCGA-YL-A8HJ       TCGA-YL-A8HK 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-YL-A8HO       TCGA-YL-A8S8       TCGA-YL-A8SF       TCGA-YL-A8SH 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-YL-A8SI       TCGA-YL-A8SJ       TCGA-YL-A8SK       TCGA-YL-A8SO 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-YL-A8SR       TCGA-YL-A9WH       TCGA-YL-A9WY       TCGA-ZG-A8QW 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-ZG-A8QX       TCGA-ZG-A8QY       TCGA-ZG-A8QZ       TCGA-ZG-A9KY 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-ZG-A9L0       TCGA-ZG-A9L1       TCGA-ZG-A9L2       TCGA-ZG-A9L4 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-ZG-A9L5       TCGA-ZG-A9L6       TCGA-ZG-A9L9       TCGA-ZG-A9LB 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-ZG-A9LM       TCGA-ZG-A9LN       TCGA-ZG-A9LS       TCGA-ZG-A9LU 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-ZG-A9LZ       TCGA-ZG-A9M4       TCGA-ZG-A9MC       TCGA-ZG-A9N3 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-ZG-A9ND       TCGA-ZG-A9NI 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHHADH MUTATED        0      1      0      0      1
  EHHADH WILD-TYPE     75     87     69     23     64
D22V10, multiclass
[1] "Remove cluster labels:" "EHHADH MUTATED"        
clus
  EHHADH MUTATED EHHADH WILD-TYPE 
               2              318 
      TCGA-2A-A8VL       TCGA-2A-A8VV       TCGA-2A-A8W3       TCGA-2A-AAYF 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-2A-AAYO       TCGA-2A-AAYU       TCGA-4L-AA1F       TCGA-CH-5737 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5741       TCGA-CH-5746 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5762       TCGA-CH-5763       TCGA-CH-5764 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-CH-5766       TCGA-CH-5769       TCGA-CH-5772       TCGA-CH-5789 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494       TCGA-EJ-5497 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-5504       TCGA-EJ-5506       TCGA-EJ-5512       TCGA-EJ-5514 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5522       TCGA-EJ-5524 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5542 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7115       TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7315       TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7328       TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7782 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7783       TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7788       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46G       TCGA-EJ-A46H 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A6RA 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A6RC       TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A7NM       TCGA-EJ-A8FN       TCGA-EJ-A8FO       TCGA-EJ-A8FP 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-EJ-A8FU       TCGA-EJ-AB20       TCGA-EJ-AB27       TCGA-FC-7708 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-FC-7961       TCGA-FC-A8O0       TCGA-G9-6329       TCGA-G9-6333 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6336       TCGA-G9-6338       TCGA-G9-6339       TCGA-G9-6342 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6347       TCGA-G9-6351       TCGA-G9-6353       TCGA-G9-6354 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6361       TCGA-G9-6365       TCGA-G9-6369       TCGA-G9-6377 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-6379       TCGA-G9-6498       TCGA-G9-6499       TCGA-G9-7509 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-7510       TCGA-G9-7519       TCGA-G9-7521       TCGA-G9-7522 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-G9-7523       TCGA-G9-A9S0       TCGA-G9-A9S4       TCGA-G9-A9S7 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-H9-7775       TCGA-H9-A6BX       TCGA-HC-7075       TCGA-HC-7078 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7079       TCGA-HC-7081       TCGA-HC-7209       TCGA-HC-7210 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7212       TCGA-HC-7213       TCGA-HC-7230       TCGA-HC-7231 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7232       TCGA-HC-7233       TCGA-HC-7737       TCGA-HC-7740 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7742       TCGA-HC-7744       TCGA-HC-7747       TCGA-HC-7748 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7749       TCGA-HC-7750       TCGA-HC-7817       TCGA-HC-7818 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-7820       TCGA-HC-7821       TCGA-HC-8258       TCGA-HC-8260 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-8261       TCGA-HC-8262       TCGA-HC-8264       TCGA-HC-8265 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-8266       TCGA-HC-A4ZV       TCGA-HC-A631       TCGA-HC-A632 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-A6AL       TCGA-HC-A6AN       TCGA-HC-A6AP       TCGA-HC-A6HX 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-A6HY       TCGA-HC-A76W       TCGA-HC-A8D0       TCGA-HC-A8D1 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HC-A9TE       TCGA-HC-A9TH       TCGA-HI-7168       TCGA-HI-7169 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-HI-7170       TCGA-HI-7171       TCGA-J4-8198       TCGA-J4-8200 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J4-A67L       TCGA-J4-A67M       TCGA-J4-A67Q       TCGA-J4-A67R 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J4-A67T       TCGA-J4-A6G1       TCGA-J4-A6G3       TCGA-J4-A83I 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J4-A83J       TCGA-J4-A83K       TCGA-J4-A83L       TCGA-J4-A83M 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J4-AATV       TCGA-J4-AAU2       TCGA-J9-A52B       TCGA-J9-A52C 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-J9-A52E       TCGA-J9-A8CK       TCGA-J9-A8CL       TCGA-J9-A8CM 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KC-A4BL       TCGA-KC-A4BO       TCGA-KC-A4BR       TCGA-KC-A4BV 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KC-A7F3       TCGA-KC-A7FA       TCGA-KC-A7FE       TCGA-KK-A59V 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A59Y       TCGA-KK-A59Z       TCGA-KK-A5A1       TCGA-KK-A6DY 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A6E0       TCGA-KK-A6E1       TCGA-KK-A6E2       TCGA-KK-A6E4 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A6E5       TCGA-KK-A6E7       TCGA-KK-A7AQ       TCGA-KK-A7B0 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A7B1       TCGA-KK-A7B2       TCGA-KK-A7B3       TCGA-KK-A7B4 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A8I5       TCGA-KK-A8I6       TCGA-KK-A8I7       TCGA-KK-A8I8 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A8I9       TCGA-KK-A8IA       TCGA-KK-A8IB       TCGA-KK-A8IC 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A8IG       TCGA-KK-A8IH       TCGA-KK-A8IJ       TCGA-KK-A8IL 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-KK-A8IM       TCGA-M7-A720       TCGA-M7-A723       TCGA-M7-A725 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-MG-AAMC       TCGA-QU-A6IM       TCGA-QU-A6IO       TCGA-QU-A6IP 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-TK-A8OK       TCGA-TP-A8TT       TCGA-V1-A8MG       TCGA-V1-A8MJ 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-V1-A8MK       TCGA-V1-A8MM       TCGA-V1-A8WL       TCGA-V1-A8WV 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-V1-A8WW       TCGA-V1-A8X3       TCGA-V1-A9O5       TCGA-V1-A9O7 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-V1-A9O9       TCGA-V1-A9OA       TCGA-V1-A9OH       TCGA-V1-A9OL 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-V1-A9OQ       TCGA-V1-A9OT       TCGA-V1-A9OX       TCGA-V1-A9Z7 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-V1-A9Z8       TCGA-V1-A9Z9       TCGA-V1-A9ZG       TCGA-V1-A9ZI 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-V1-A9ZK       TCGA-V1-A9ZR       TCGA-VN-A88I       TCGA-VN-A88K 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-VN-A88L       TCGA-VN-A88P       TCGA-VP-A872       TCGA-VP-A878 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-VP-A879       TCGA-VP-A87C       TCGA-VP-A87E       TCGA-VP-A87K 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-VP-AA1N       TCGA-X4-A8KQ       TCGA-X4-A8KS       TCGA-XA-A8JR 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-XJ-A83H       TCGA-XJ-A9DI       TCGA-XJ-A9DK       TCGA-XJ-A9DQ 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-XK-AAIV       TCGA-XK-AAIW       TCGA-XK-AAJ3       TCGA-XK-AAJA 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-XK-AAJT       TCGA-XK-AAJU       TCGA-XK-AAK1       TCGA-XQ-A8TB 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-Y6-A8TL       TCGA-Y6-A9XI       TCGA-YL-A8HJ       TCGA-YL-A8HK 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-YL-A8HO       TCGA-YL-A8S8       TCGA-YL-A8SF       TCGA-YL-A8SH 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-YL-A8SI       TCGA-YL-A8SJ       TCGA-YL-A8SK       TCGA-YL-A8SO 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-YL-A8SR       TCGA-YL-A9WH       TCGA-YL-A9WY       TCGA-ZG-A8QW 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-ZG-A8QX       TCGA-ZG-A8QY       TCGA-ZG-A8QZ       TCGA-ZG-A9KY 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-ZG-A9L0       TCGA-ZG-A9L1       TCGA-ZG-A9L2       TCGA-ZG-A9L4 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-ZG-A9L5       TCGA-ZG-A9L6       TCGA-ZG-A9L9       TCGA-ZG-A9LB 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-ZG-A9LM       TCGA-ZG-A9LN       TCGA-ZG-A9LS       TCGA-ZG-A9LU 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-ZG-A9LZ       TCGA-ZG-A9M4       TCGA-ZG-A9MC       TCGA-ZG-A9N3 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-ZG-A9ND       TCGA-ZG-A9NI 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 

Clustering(23) Variable = MED12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12 MUTATED        2      1      2      3
  MED12 WILD-TYPE    106     90     96    192
D23V1, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2             106
  CLUS_2             1              90
  CLUS_3             2              96
  CLUS_4             3             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12 MUTATED        2      4      2      0
  MED12 WILD-TYPE    159    136    124     71
D23V2, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2             159
  CLUS_2             4             136
  CLUS_3             2             124
  CLUS_4             0              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MED12 MUTATED        2      1      0      1      1      1
  MED12 WILD-TYPE    104     50     45     52     57     38
D23V3, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              50
  CLUS_3             0              45
  CLUS_4             1              52
  CLUS_5             1              57
  CLUS_6             1              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12 MUTATED        2      2      1      1
  MED12 WILD-TYPE     73    112     92     69
D23V4, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             2             112
  CLUS_3             1              92
  CLUS_4             1              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12 MUTATED        2      2      2      2
  MED12 WILD-TYPE     94    140    149    106
D23V5, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2              94
  CLUS_2             2             140
  CLUS_3             2             149
  CLUS_4             2             106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED12 MUTATED        1      6      1
  MED12 WILD-TYPE    172    202    115
D23V6, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             1             172
  CLUS_2             6             202
  CLUS_3             1             115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12 MUTATED        5      1      1      1
  MED12 WILD-TYPE    208     70    123     85
D23V7, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             5             208
  CLUS_2             1              70
  CLUS_3             1             123
  CLUS_4             1              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED12 MUTATED        3      1      0      3      1
  MED12 WILD-TYPE    145     97     59    130     55
D23V8, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             3             145
  CLUS_2             1              97
  CLUS_3             0              59
  CLUS_4             3             130
  CLUS_5             1              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED12 MUTATED        1      1      2      0
  MED12 WILD-TYPE     64     92     76     84
D23V9, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             1              64
  CLUS_2             1              92
  CLUS_3             2              76
  CLUS_4             0              84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED12 MUTATED        2      1      1      0      0
  MED12 WILD-TYPE     73     87     68     23     65
D23V10, multiclass
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             1              87
  CLUS_3             1              68
  CLUS_4             0              23
  CLUS_5             0              65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = ZNF709 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        1      0      1      3
  ZNF709 WILD-TYPE    107     91     97    192
D24V1, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1              107
  CLUS_2              0               91
  CLUS_3              1               97
  CLUS_4              3              192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        2      0      1      2
  ZNF709 WILD-TYPE    159    140    125     69
D24V2, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              2              159
  CLUS_2              0              140
  CLUS_3              1              125
  CLUS_4              2               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF709 MUTATED        0      1      0      2      0      1
  ZNF709 WILD-TYPE    106     50     45     51     58     38
D24V3, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              1               50
  CLUS_3              0               45
  CLUS_4              2               51
  CLUS_5              0               58
  CLUS_6              1               38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        0      0      3      1
  ZNF709 WILD-TYPE     75    114     90     69
D24V4, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              0               75
  CLUS_2              0              114
  CLUS_3              3               90
  CLUS_4              1               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        0      2      1      2
  ZNF709 WILD-TYPE     96    140    150    106
D24V5, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              0               96
  CLUS_2              2              140
  CLUS_3              1              150
  CLUS_4              2              106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF709 MUTATED        2      1      2
  ZNF709 WILD-TYPE    171    207    114
D24V6, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              2              171
  CLUS_2              1              207
  CLUS_3              2              114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        1      0      1      3
  ZNF709 WILD-TYPE    212     71    123     83
D24V7, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1              212
  CLUS_2              0               71
  CLUS_3              1              123
  CLUS_4              3               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF709 MUTATED        1      0      0      2      2
  ZNF709 WILD-TYPE    147     98     59    131     54
D24V8, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1              147
  CLUS_2              0               98
  CLUS_3              0               59
  CLUS_4              2              131
  CLUS_5              2               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF709 MUTATED        1      1      0      3
  ZNF709 WILD-TYPE     64     92     78     81
D24V9, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1               64
  CLUS_2              1               92
  CLUS_3              0               78
  CLUS_4              3               81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF709 MUTATED        1      1      0      0      3
  ZNF709 WILD-TYPE     74     87     69     23     62
D24V10, multiclass
        clus
vv       ZNF709 MUTATED ZNF709 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              1               87
  CLUS_3              0               69
  CLUS_4              0               23
  CLUS_5              3               62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = TCEB3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEB3 MUTATED        1      1      0      2
  TCEB3 WILD-TYPE    107     90     98    193
D25V1, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             1             107
  CLUS_2             1              90
  CLUS_3             0              98
  CLUS_4             2             193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEB3 MUTATED        2      0      2      0
  TCEB3 WILD-TYPE    159    140    124     71
D25V2, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             2             159
  CLUS_2             0             140
  CLUS_3             2             124
  CLUS_4             0              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TCEB3 MUTATED        0      0      0      1      1      1
  TCEB3 WILD-TYPE    106     51     45     52     57     38
D25V3, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              51
  CLUS_3             0              45
  CLUS_4             1              52
  CLUS_5             1              57
  CLUS_6             1              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEB3 MUTATED        0      1      2      0
  TCEB3 WILD-TYPE     75    113     91     70
D25V4, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             0              75
  CLUS_2             1             113
  CLUS_3             2              91
  CLUS_4             0              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEB3 MUTATED        0      2      0      2
  TCEB3 WILD-TYPE     96    140    151    106
D25V5, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             0              96
  CLUS_2             2             140
  CLUS_3             0             151
  CLUS_4             2             106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCEB3 MUTATED        1      0      3
  TCEB3 WILD-TYPE    172    208    113
D25V6, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             1             172
  CLUS_2             0             208
  CLUS_3             3             113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEB3 MUTATED        2      1      1      0
  TCEB3 WILD-TYPE    211     70    123     86
D25V7, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             2             211
  CLUS_2             1              70
  CLUS_3             1             123
  CLUS_4             0              86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCEB3 MUTATED        1      1      2      0      0
  TCEB3 WILD-TYPE    147     97     57    133     56
D25V8, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             1             147
  CLUS_2             1              97
  CLUS_3             2              57
  CLUS_4             0             133
  CLUS_5             0              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCEB3 MUTATED        1      2      0      0
  TCEB3 WILD-TYPE     64     91     78     84
D25V9, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             1              64
  CLUS_2             2              91
  CLUS_3             0              78
  CLUS_4             0              84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCEB3 MUTATED        1      1      0      1      0
  TCEB3 WILD-TYPE     74     87     69     22     65
D25V10, multiclass
        clus
vv       TCEB3 MUTATED TCEB3 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             1              87
  CLUS_3             0              69
  CLUS_4             1              22
  CLUS_5             0              65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = MED15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED15 MUTATED        3      0      3      1
  MED15 WILD-TYPE    105     91     95    194
D26V1, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             3             105
  CLUS_2             0              91
  CLUS_3             3              95
  CLUS_4             1             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED15 MUTATED        0      4      2      1
  MED15 WILD-TYPE    161    136    124     70
D26V2, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             0             161
  CLUS_2             4             136
  CLUS_3             2             124
  CLUS_4             1              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MED15 MUTATED        1      2      0      1      0      1
  MED15 WILD-TYPE    105     49     45     52     58     38
D26V3, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             2              49
  CLUS_3             0              45
  CLUS_4             1              52
  CLUS_5             0              58
  CLUS_6             1              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED15 MUTATED        0      2      1      2
  MED15 WILD-TYPE     75    112     92     68
D26V4, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             0              75
  CLUS_2             2             112
  CLUS_3             1              92
  CLUS_4             2              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED15 MUTATED        1      1      3      2
  MED15 WILD-TYPE     95    141    148    106
D26V5, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             1              95
  CLUS_2             1             141
  CLUS_3             3             148
  CLUS_4             2             106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED        2      5      0
  MED15 WILD-TYPE    171    203    116
D26V6, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             2             171
  CLUS_2             5             203
  CLUS_3             0             116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED15 MUTATED        2      1      2      2
  MED15 WILD-TYPE    211     70    122     84
D26V7, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             2             211
  CLUS_2             1              70
  CLUS_3             2             122
  CLUS_4             2              84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED15 MUTATED        2      1      0      2      2
  MED15 WILD-TYPE    146     97     59    131     54
D26V8, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             2             146
  CLUS_2             1              97
  CLUS_3             0              59
  CLUS_4             2             131
  CLUS_5             2              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED15 MUTATED        1      3      1      1
  MED15 WILD-TYPE     64     90     77     83
D26V9, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             1              64
  CLUS_2             3              90
  CLUS_3             1              77
  CLUS_4             1              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED15 MUTATED        1      2      1      1      1
  MED15 WILD-TYPE     74     86     68     22     64
D26V10, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             2              86
  CLUS_3             1              68
  CLUS_4             1              22
  CLUS_5             1              64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = ERF MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERF MUTATED        1      0      1      2
  ERF WILD-TYPE    107     91     97    193
D27V1, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           1           107
  CLUS_2           0            91
  CLUS_3           1            97
  CLUS_4           2           193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERF MUTATED        1      2      0      2
  ERF WILD-TYPE    160    138    126     69
D27V2, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           1           160
  CLUS_2           2           138
  CLUS_3           0           126
  CLUS_4           2            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERF MUTATED        1      0      0      1      0      1
  ERF WILD-TYPE    105     51     45     52     58     38
D27V3, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           1           105
  CLUS_2           0            51
  CLUS_3           0            45
  CLUS_4           1            52
  CLUS_5           0            58
  CLUS_6           1            38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERF MUTATED        1      0      0      2
  ERF WILD-TYPE     74    114     93     68
D27V4, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           1            74
  CLUS_2           0           114
  CLUS_3           0            93
  CLUS_4           2            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERF MUTATED        1      0      3      1
  ERF WILD-TYPE     95    142    148    107
D27V5, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           1            95
  CLUS_2           0           142
  CLUS_3           3           148
  CLUS_4           1           107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ERF MUTATED        2      3      0
  ERF WILD-TYPE    171    205    116
D27V6, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           2           171
  CLUS_2           3           205
  CLUS_3           0           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERF MUTATED        3      1      1      0
  ERF WILD-TYPE    210     70    123     86
D27V7, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           3           210
  CLUS_2           1            70
  CLUS_3           1           123
  CLUS_4           0            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERF MUTATED        0      1      0      4      0
  ERF WILD-TYPE    148     97     59    129     56
D27V8, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           0           148
  CLUS_2           1            97
  CLUS_3           0            59
  CLUS_4           4           129
  CLUS_5           0            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERF MUTATED        0      2      0      1
  ERF WILD-TYPE     65     91     78     83
D27V9, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           0            65
  CLUS_2           2            91
  CLUS_3           0            78
  CLUS_4           1            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERF MUTATED        1      2      0      0      0
  ERF WILD-TYPE     74     86     69     23     65
D27V10, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           1            74
  CLUS_2           2            86
  CLUS_3           0            69
  CLUS_4           0            23
  CLUS_5           0            65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = ERN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERN1 MUTATED        0      0      2      2
  ERN1 WILD-TYPE    108     91     96    193
D28V1, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            0            108
  CLUS_2            0             91
  CLUS_3            2             96
  CLUS_4            2            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERN1 MUTATED        0      4      0      0
  ERN1 WILD-TYPE    161    136    126     71
D28V2, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            0            161
  CLUS_2            4            136
  CLUS_3            0            126
  CLUS_4            0             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERN1 MUTATED        1      0      1      0      0      0
  ERN1 WILD-TYPE    105     51     44     53     58     39
D28V3, multiclass
[1] "Remove cluster labels:" "ERN1 MUTATED"          
clus
  ERN1 MUTATED ERN1 WILD-TYPE 
             2            350 
    TCGA-2A-A8VL     TCGA-2A-A8VO     TCGA-2A-A8VT     TCGA-2A-A8VV 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-2A-A8VX     TCGA-2A-A8W1     TCGA-2A-A8W3     TCGA-2A-AAYF 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-2A-AAYO     TCGA-2A-AAYU     TCGA-4L-AA1F     TCGA-CH-5737 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740     TCGA-CH-5741 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745     TCGA-CH-5748 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752     TCGA-CH-5753 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762     TCGA-CH-5763 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766     TCGA-CH-5767 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5768     TCGA-CH-5769     TCGA-CH-5771     TCGA-CH-5772 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5530     TCGA-EJ-5531     TCGA-EJ-5532     TCGA-EJ-5542 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7115     TCGA-EJ-7125     TCGA-EJ-7218     TCGA-EJ-7312 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7318 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7321     TCGA-EJ-7325     TCGA-EJ-7328     TCGA-EJ-7330 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8474     TCGA-EJ-A46B     TCGA-EJ-A46D 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46G     TCGA-EJ-A65B 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A65D     TCGA-EJ-A65E     TCGA-EJ-A65F     TCGA-EJ-A65J 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A65M     TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NF 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A7NG     TCGA-EJ-A7NH     TCGA-EJ-A7NJ     TCGA-EJ-A7NK 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A7NM     TCGA-EJ-A7NN     TCGA-EJ-A8FN     TCGA-EJ-A8FO 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A8FS     TCGA-EJ-A8FU     TCGA-EJ-AB20     TCGA-EJ-AB27 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A4JI     TCGA-FC-A5OB 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-FC-A66V     TCGA-FC-A6HD     TCGA-FC-A8O0     TCGA-G9-6329 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6343 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6347     TCGA-G9-6351     TCGA-G9-6353     TCGA-G9-6356 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6361     TCGA-G9-6362     TCGA-G9-6363     TCGA-G9-6364 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367     TCGA-G9-6370 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6371     TCGA-G9-6373     TCGA-G9-6377     TCGA-G9-6378 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6379     TCGA-G9-6384     TCGA-G9-6494     TCGA-G9-6496 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7521 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525     TCGA-G9-A9S0 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-A9S4     TCGA-G9-A9S7     TCGA-H9-7775     TCGA-H9-A6BX 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-H9-A6BY     TCGA-HC-7077     TCGA-HC-7079     TCGA-HC-7081 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7210     TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7232     TCGA-HC-7233     TCGA-HC-7736     TCGA-HC-7740 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7744     TCGA-HC-7748     TCGA-HC-7817     TCGA-HC-8264 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-A76X     TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HI-7171     TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67K 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J4-A67M     TCGA-J4-A67N     TCGA-J4-A67O     TCGA-J4-A67Q 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6M7     TCGA-J4-A83I 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J4-A83N     TCGA-J9-A52C     TCGA-J9-A52E     TCGA-J9-A8CK 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-J9-A8CN     TCGA-J9-A8CP     TCGA-KC-A4BL 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KC-A4BN     TCGA-KC-A4BO     TCGA-KC-A4BR     TCGA-KC-A4BV 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KC-A7F3     TCGA-KC-A7F5     TCGA-KC-A7F6     TCGA-KC-A7FA 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KC-A7FD     TCGA-KC-A7FE     TCGA-KK-A59V     TCGA-KK-A59X 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A5A1     TCGA-KK-A6E0 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A6E3     TCGA-KK-A6E4 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A6E8     TCGA-KK-A7AP     TCGA-KK-A7AU     TCGA-KK-A7AZ 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A7B0     TCGA-KK-A7B1     TCGA-KK-A7B2     TCGA-KK-A7B3 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A7B4     TCGA-KK-A8I4     TCGA-KK-A8I5     TCGA-KK-A8I6 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A8I7     TCGA-KK-A8I8     TCGA-KK-A8IA     TCGA-KK-A8IB 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A8IC     TCGA-KK-A8ID     TCGA-KK-A8IF     TCGA-KK-A8IH 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A8II     TCGA-KK-A8IJ     TCGA-M7-A71Y     TCGA-M7-A71Z 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-M7-A720     TCGA-M7-A721     TCGA-M7-A722     TCGA-M7-A723 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-M7-A724     TCGA-M7-A725     TCGA-QU-A6IN     TCGA-QU-A6IP 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-SU-A7E7     TCGA-TK-A8OK     TCGA-TP-A8TT     TCGA-TP-A8TV 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-V1-A8MF     TCGA-V1-A8MJ     TCGA-V1-A8WL     TCGA-V1-A8X3 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-V1-A9O5     TCGA-V1-A9OH     TCGA-V1-A9OL     TCGA-V1-A9OQ 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-V1-A9OT     TCGA-V1-A9OX     TCGA-V1-A9OY     TCGA-V1-A9Z7 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-V1-A9Z8     TCGA-V1-A9Z9     TCGA-V1-A9ZG     TCGA-V1-A9ZI 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-V1-A9ZR     TCGA-VN-A88I     TCGA-VN-A88K     TCGA-VN-A88L 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-VN-A88P     TCGA-VP-A875     TCGA-VP-A878     TCGA-VP-A87E 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-VP-A87J     TCGA-VP-A87K     TCGA-VP-AA1N     TCGA-WW-A8ZI 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-X4-A8KQ     TCGA-XA-A8JR     TCGA-Y6-A8TL     TCGA-Y6-A9XI 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YJ-A8SW     TCGA-YL-A8HJ     TCGA-YL-A8HK     TCGA-YL-A8HL 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YL-A8HM     TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8S9 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YL-A8SA     TCGA-YL-A8SC     TCGA-YL-A8SF     TCGA-YL-A8SH 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YL-A8SI     TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SL 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YL-A8SP     TCGA-YL-A8SQ     TCGA-YL-A8SR     TCGA-YL-A9WI 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YL-A9WJ     TCGA-YL-A9WK     TCGA-YL-A9WL     TCGA-YL-A9WX 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YL-A9WY     TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-ZG-A8QZ     TCGA-ZG-A9KY     TCGA-ZG-A9L0     TCGA-ZG-A9L1 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-ZG-A9L4     TCGA-ZG-A9L5     TCGA-ZG-A9L6     TCGA-ZG-A9L9 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-ZG-A9LB     TCGA-ZG-A9LM     TCGA-ZG-A9LS     TCGA-ZG-A9LU 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-ZG-A9LY     TCGA-ZG-A9LZ     TCGA-ZG-A9M4     TCGA-ZG-A9MC 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-ZG-A9N3     TCGA-ZG-A9NI 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERN1 MUTATED        0      1      1      0
  ERN1 WILD-TYPE     75    113     92     70
D28V4, multiclass
[1] "Remove cluster labels:" "ERN1 MUTATED"          
clus
  ERN1 MUTATED ERN1 WILD-TYPE 
             2            350 
    TCGA-2A-A8VL     TCGA-2A-A8VO     TCGA-2A-A8VT     TCGA-2A-A8VV 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-2A-A8VX     TCGA-2A-A8W1     TCGA-2A-A8W3     TCGA-2A-AAYF 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-2A-AAYO     TCGA-2A-AAYU     TCGA-4L-AA1F     TCGA-CH-5737 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740     TCGA-CH-5741 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745     TCGA-CH-5748 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752     TCGA-CH-5753 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762     TCGA-CH-5763 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766     TCGA-CH-5767 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5768     TCGA-CH-5769     TCGA-CH-5771     TCGA-CH-5772 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-5530     TCGA-EJ-5531     TCGA-EJ-5532     TCGA-EJ-5542 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7115     TCGA-EJ-7125     TCGA-EJ-7218     TCGA-EJ-7312 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7318 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7321     TCGA-EJ-7325     TCGA-EJ-7328     TCGA-EJ-7330 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8474     TCGA-EJ-A46B     TCGA-EJ-A46D 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46G     TCGA-EJ-A65B 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A65D     TCGA-EJ-A65E     TCGA-EJ-A65F     TCGA-EJ-A65J 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A65M     TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NF 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A7NG     TCGA-EJ-A7NH     TCGA-EJ-A7NJ     TCGA-EJ-A7NK 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A7NM     TCGA-EJ-A7NN     TCGA-EJ-A8FN     TCGA-EJ-A8FO 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-EJ-A8FS     TCGA-EJ-A8FU     TCGA-EJ-AB20     TCGA-EJ-AB27 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A4JI     TCGA-FC-A5OB 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-FC-A66V     TCGA-FC-A6HD     TCGA-FC-A8O0     TCGA-G9-6329 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6343 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6347     TCGA-G9-6351     TCGA-G9-6353     TCGA-G9-6356 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6361     TCGA-G9-6362     TCGA-G9-6363     TCGA-G9-6364 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367     TCGA-G9-6370 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6371     TCGA-G9-6373     TCGA-G9-6377     TCGA-G9-6378 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6379     TCGA-G9-6384     TCGA-G9-6494     TCGA-G9-6496 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7521 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525     TCGA-G9-A9S0 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-G9-A9S4     TCGA-G9-A9S7     TCGA-H9-7775     TCGA-H9-A6BX 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-H9-A6BY     TCGA-HC-7077     TCGA-HC-7079     TCGA-HC-7081 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7210     TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7232     TCGA-HC-7233     TCGA-HC-7736     TCGA-HC-7740 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-7744     TCGA-HC-7748     TCGA-HC-7817     TCGA-HC-8264 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HC-A76X     TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-HI-7171     TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67K 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J4-A67M     TCGA-J4-A67N     TCGA-J4-A67O     TCGA-J4-A67Q 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6M7     TCGA-J4-A83I 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J4-A83N     TCGA-J9-A52C     TCGA-J9-A52E     TCGA-J9-A8CK 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-J9-A8CN     TCGA-J9-A8CP     TCGA-KC-A4BL 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KC-A4BN     TCGA-KC-A4BO     TCGA-KC-A4BR     TCGA-KC-A4BV 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KC-A7F3     TCGA-KC-A7F5     TCGA-KC-A7F6     TCGA-KC-A7FA 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KC-A7FD     TCGA-KC-A7FE     TCGA-KK-A59V     TCGA-KK-A59X 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A5A1     TCGA-KK-A6E0 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A6E3     TCGA-KK-A6E4 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A6E8     TCGA-KK-A7AP     TCGA-KK-A7AU     TCGA-KK-A7AZ 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A7B0     TCGA-KK-A7B1     TCGA-KK-A7B2     TCGA-KK-A7B3 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A7B4     TCGA-KK-A8I4     TCGA-KK-A8I5     TCGA-KK-A8I6 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A8I7     TCGA-KK-A8I8     TCGA-KK-A8IA     TCGA-KK-A8IB 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A8IC     TCGA-KK-A8ID     TCGA-KK-A8IF     TCGA-KK-A8IH 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-KK-A8II     TCGA-KK-A8IJ     TCGA-M7-A71Y     TCGA-M7-A71Z 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-M7-A720     TCGA-M7-A721     TCGA-M7-A722     TCGA-M7-A723 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-M7-A724     TCGA-M7-A725     TCGA-QU-A6IN     TCGA-QU-A6IP 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-SU-A7E7     TCGA-TK-A8OK     TCGA-TP-A8TT     TCGA-TP-A8TV 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-V1-A8MF     TCGA-V1-A8MJ     TCGA-V1-A8WL     TCGA-V1-A8X3 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-V1-A9O5     TCGA-V1-A9OH     TCGA-V1-A9OL     TCGA-V1-A9OQ 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-V1-A9OT     TCGA-V1-A9OX     TCGA-V1-A9OY     TCGA-V1-A9Z7 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-V1-A9Z8     TCGA-V1-A9Z9     TCGA-V1-A9ZG     TCGA-V1-A9ZI 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-V1-A9ZR     TCGA-VN-A88I     TCGA-VN-A88K     TCGA-VN-A88L 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-VN-A88P     TCGA-VP-A875     TCGA-VP-A878     TCGA-VP-A87E 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-VP-A87J     TCGA-VP-A87K     TCGA-VP-AA1N     TCGA-WW-A8ZI 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-X4-A8KQ     TCGA-XA-A8JR     TCGA-Y6-A8TL     TCGA-Y6-A9XI 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YJ-A8SW     TCGA-YL-A8HJ     TCGA-YL-A8HK     TCGA-YL-A8HL 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YL-A8HM     TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8S9 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YL-A8SA     TCGA-YL-A8SC     TCGA-YL-A8SF     TCGA-YL-A8SH 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YL-A8SI     TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SL 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YL-A8SP     TCGA-YL-A8SQ     TCGA-YL-A8SR     TCGA-YL-A9WI 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YL-A9WJ     TCGA-YL-A9WK     TCGA-YL-A9WL     TCGA-YL-A9WX 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-YL-A9WY     TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-ZG-A8QZ     TCGA-ZG-A9KY     TCGA-ZG-A9L0     TCGA-ZG-A9L1 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-ZG-A9L4     TCGA-ZG-A9L5     TCGA-ZG-A9L6     TCGA-ZG-A9L9 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-ZG-A9LB     TCGA-ZG-A9LM     TCGA-ZG-A9LS     TCGA-ZG-A9LU 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-ZG-A9LY     TCGA-ZG-A9LZ     TCGA-ZG-A9M4     TCGA-ZG-A9MC 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
    TCGA-ZG-A9N3     TCGA-ZG-A9NI 
"ERN1 WILD-TYPE" "ERN1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERN1 MUTATED        0      0      3      1
  ERN1 WILD-TYPE     96    142    148    107
D28V5, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            0             96
  CLUS_2            0            142
  CLUS_3            3            148
  CLUS_4            1            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERN1 MUTATED        1      3      0
  ERN1 WILD-TYPE    172    205    116
D28V6, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            1            172
  CLUS_2            3            205
  CLUS_3            0            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERN1 MUTATED        4      0      0      0
  ERN1 WILD-TYPE    209     71    124     86
D28V7, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            4            209
  CLUS_2            0             71
  CLUS_3            0            124
  CLUS_4            0             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERN1 MUTATED        2      0      0      2      0
  ERN1 WILD-TYPE    146     98     59    131     56
D28V8, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            2            146
  CLUS_2            0             98
  CLUS_3            0             59
  CLUS_4            2            131
  CLUS_5            0             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERN1 MUTATED        0      3      0      0
  ERN1 WILD-TYPE     65     90     78     84
D28V9, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            0             65
  CLUS_2            3             90
  CLUS_3            0             78
  CLUS_4            0             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERN1 MUTATED        0      3      0      0      0
  ERN1 WILD-TYPE     75     85     69     23     65
D28V10, multiclass
        clus
vv       ERN1 MUTATED ERN1 WILD-TYPE
  CLUS_1            0             75
  CLUS_2            3             85
  CLUS_3            0             69
  CLUS_4            0             23
  CLUS_5            0             65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = MLLT10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT10 MUTATED        1      0      3      1
  MLLT10 WILD-TYPE    107     91     95    194
D29V1, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              1              107
  CLUS_2              0               91
  CLUS_3              3               95
  CLUS_4              1              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT10 MUTATED        3      1      0      1
  MLLT10 WILD-TYPE    158    139    126     70
D29V2, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              3              158
  CLUS_2              1              139
  CLUS_3              0              126
  CLUS_4              1               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLLT10 MUTATED        1      0      0      1      1      1
  MLLT10 WILD-TYPE    105     51     45     52     57     38
D29V3, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               51
  CLUS_3              0               45
  CLUS_4              1               52
  CLUS_5              1               57
  CLUS_6              1               38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT10 MUTATED        1      2      0      1
  MLLT10 WILD-TYPE     74    112     93     69
D29V4, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              1               74
  CLUS_2              2              112
  CLUS_3              0               93
  CLUS_4              1               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT10 MUTATED        1      1      2      1
  MLLT10 WILD-TYPE     95    141    149    107
D29V5, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              1               95
  CLUS_2              1              141
  CLUS_3              2              149
  CLUS_4              1              107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLLT10 MUTATED        2      3      0
  MLLT10 WILD-TYPE    171    205    116
D29V6, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              2              171
  CLUS_2              3              205
  CLUS_3              0              116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT10 MUTATED        3      0      2      0
  MLLT10 WILD-TYPE    210     71    122     86
D29V7, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              3              210
  CLUS_2              0               71
  CLUS_3              2              122
  CLUS_4              0               86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLLT10 MUTATED        3      0      0      2      0
  MLLT10 WILD-TYPE    145     98     59    131     56
D29V8, multiclass
        clus
vv       MLLT10 MUTATED MLLT10 WILD-TYPE
  CLUS_1              3              145
  CLUS_2              0               98
  CLUS_3              0               59
  CLUS_4              2              131
  CLUS_5              0               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT10 MUTATED        1      1      0      0
  MLLT10 WILD-TYPE     64     92     78     84
D29V9, multiclass
[1] "Remove cluster labels:" "MLLT10 MUTATED"        
clus
  MLLT10 MUTATED MLLT10 WILD-TYPE 
               2              318 
      TCGA-2A-A8VL       TCGA-2A-A8VV       TCGA-2A-A8W3       TCGA-2A-AAYF 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-2A-AAYO       TCGA-2A-AAYU       TCGA-4L-AA1F       TCGA-CH-5737 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5741       TCGA-CH-5746 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5752       TCGA-CH-5762       TCGA-CH-5763 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-CH-5764       TCGA-CH-5766       TCGA-CH-5769       TCGA-CH-5772 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-CH-5789       TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-5497       TCGA-EJ-5504       TCGA-EJ-5506       TCGA-EJ-5512 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-5514       TCGA-EJ-5517       TCGA-EJ-5522       TCGA-EJ-5524 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5542 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7115       TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7315       TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7328       TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7782 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7783       TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7788       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46G       TCGA-EJ-A46H 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A6RA 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A6RC       TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A7NM       TCGA-EJ-A8FN       TCGA-EJ-A8FO       TCGA-EJ-A8FP 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A8FU       TCGA-EJ-AB20       TCGA-EJ-AB27       TCGA-FC-7708 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-FC-7961       TCGA-FC-A8O0       TCGA-G9-6329       TCGA-G9-6333 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6336       TCGA-G9-6338       TCGA-G9-6339       TCGA-G9-6342 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6347       TCGA-G9-6351       TCGA-G9-6353       TCGA-G9-6354 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6361       TCGA-G9-6365       TCGA-G9-6369       TCGA-G9-6377 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6379       TCGA-G9-6498       TCGA-G9-6499       TCGA-G9-7509 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-7510       TCGA-G9-7519       TCGA-G9-7521       TCGA-G9-7522 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-7523       TCGA-G9-A9S0       TCGA-G9-A9S4       TCGA-G9-A9S7 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-H9-7775       TCGA-H9-A6BX       TCGA-HC-7075       TCGA-HC-7078 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7079       TCGA-HC-7081       TCGA-HC-7209       TCGA-HC-7210 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7212       TCGA-HC-7213       TCGA-HC-7230       TCGA-HC-7231 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7232       TCGA-HC-7233       TCGA-HC-7737       TCGA-HC-7740 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7742       TCGA-HC-7744       TCGA-HC-7745       TCGA-HC-7747 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7748       TCGA-HC-7749       TCGA-HC-7750       TCGA-HC-7817 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7818       TCGA-HC-7820       TCGA-HC-7821       TCGA-HC-8258 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-8260       TCGA-HC-8261       TCGA-HC-8262       TCGA-HC-8264 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-8265       TCGA-HC-8266       TCGA-HC-A4ZV       TCGA-HC-A631 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-A632       TCGA-HC-A6AL       TCGA-HC-A6AN       TCGA-HC-A6AP 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-A6HX       TCGA-HC-A6HY       TCGA-HC-A76W       TCGA-HC-A8D0 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-A8D1       TCGA-HC-A9TE       TCGA-HC-A9TH       TCGA-HI-7168 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171       TCGA-J4-8198 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J4-8200       TCGA-J4-A67L       TCGA-J4-A67M       TCGA-J4-A67Q 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J4-A67R       TCGA-J4-A67T       TCGA-J4-A6G1       TCGA-J4-A6G3 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J4-A83I       TCGA-J4-A83J       TCGA-J4-A83K       TCGA-J4-A83L 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J4-A83M       TCGA-J4-AATV       TCGA-J4-AAU2       TCGA-J9-A52B 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J9-A52C       TCGA-J9-A52E       TCGA-J9-A8CK       TCGA-J9-A8CL 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J9-A8CM       TCGA-KC-A4BL       TCGA-KC-A4BO       TCGA-KC-A4BR 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KC-A4BV       TCGA-KC-A7F3       TCGA-KC-A7FA       TCGA-KC-A7FE 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A59V       TCGA-KK-A59Y       TCGA-KK-A59Z       TCGA-KK-A5A1 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A6DY       TCGA-KK-A6E0       TCGA-KK-A6E1       TCGA-KK-A6E2 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A6E4       TCGA-KK-A6E5       TCGA-KK-A6E7       TCGA-KK-A7AQ 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A7B0       TCGA-KK-A7B1       TCGA-KK-A7B2       TCGA-KK-A7B3 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A7B4       TCGA-KK-A8I5       TCGA-KK-A8I6       TCGA-KK-A8I7 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A8I8       TCGA-KK-A8I9       TCGA-KK-A8IA       TCGA-KK-A8IB 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A8IC       TCGA-KK-A8IG       TCGA-KK-A8IH       TCGA-KK-A8IJ 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A8IL       TCGA-KK-A8IM       TCGA-M7-A720       TCGA-M7-A723 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-M7-A725       TCGA-MG-AAMC       TCGA-QU-A6IM       TCGA-QU-A6IO 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-QU-A6IP       TCGA-TK-A8OK       TCGA-TP-A8TT       TCGA-V1-A8MG 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-V1-A8MJ       TCGA-V1-A8MK       TCGA-V1-A8MM       TCGA-V1-A8WL 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-V1-A8WV       TCGA-V1-A8WW       TCGA-V1-A8X3       TCGA-V1-A9O5 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-V1-A9O7       TCGA-V1-A9O9       TCGA-V1-A9OA       TCGA-V1-A9OH 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-V1-A9OL       TCGA-V1-A9OQ       TCGA-V1-A9OT       TCGA-V1-A9OX 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-V1-A9Z7       TCGA-V1-A9Z8       TCGA-V1-A9Z9       TCGA-V1-A9ZG 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-V1-A9ZI       TCGA-V1-A9ZK       TCGA-V1-A9ZR       TCGA-VN-A88I 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-VN-A88K       TCGA-VN-A88L       TCGA-VN-A88P       TCGA-VP-A872 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-VP-A878       TCGA-VP-A879       TCGA-VP-A87C       TCGA-VP-A87E 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-VP-A87K       TCGA-VP-AA1N       TCGA-X4-A8KQ       TCGA-X4-A8KS 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-XA-A8JR       TCGA-XJ-A83H       TCGA-XJ-A9DI       TCGA-XJ-A9DK 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-XJ-A9DQ       TCGA-XK-AAIV       TCGA-XK-AAJ3       TCGA-XK-AAJA 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-XK-AAJT       TCGA-XK-AAJU       TCGA-XK-AAK1       TCGA-XQ-A8TB 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-Y6-A8TL       TCGA-Y6-A9XI       TCGA-YL-A8HJ       TCGA-YL-A8HK 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-YL-A8HO       TCGA-YL-A8S8       TCGA-YL-A8SF       TCGA-YL-A8SH 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-YL-A8SI       TCGA-YL-A8SJ       TCGA-YL-A8SK       TCGA-YL-A8SO 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-YL-A8SR       TCGA-YL-A9WH       TCGA-YL-A9WY       TCGA-ZG-A8QW 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-ZG-A8QX       TCGA-ZG-A8QY       TCGA-ZG-A8QZ       TCGA-ZG-A9KY 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-ZG-A9L0       TCGA-ZG-A9L1       TCGA-ZG-A9L2       TCGA-ZG-A9L4 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-ZG-A9L5       TCGA-ZG-A9L6       TCGA-ZG-A9L9       TCGA-ZG-A9LB 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-ZG-A9LM       TCGA-ZG-A9LN       TCGA-ZG-A9LS       TCGA-ZG-A9LU 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-ZG-A9LZ       TCGA-ZG-A9M4       TCGA-ZG-A9MC       TCGA-ZG-A9N3 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-ZG-A9ND       TCGA-ZG-A9NI 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLLT10 MUTATED        0      1      0      1      0
  MLLT10 WILD-TYPE     75     87     69     22     65
D29V10, multiclass
[1] "Remove cluster labels:" "MLLT10 MUTATED"        
clus
  MLLT10 MUTATED MLLT10 WILD-TYPE 
               2              318 
      TCGA-2A-A8VL       TCGA-2A-A8VV       TCGA-2A-A8W3       TCGA-2A-AAYF 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-2A-AAYO       TCGA-2A-AAYU       TCGA-4L-AA1F       TCGA-CH-5737 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5741       TCGA-CH-5746 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-CH-5750       TCGA-CH-5752       TCGA-CH-5762       TCGA-CH-5763 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-CH-5764       TCGA-CH-5766       TCGA-CH-5769       TCGA-CH-5772 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-CH-5789       TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-5497       TCGA-EJ-5504       TCGA-EJ-5506       TCGA-EJ-5512 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-5514       TCGA-EJ-5517       TCGA-EJ-5522       TCGA-EJ-5524 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5542 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7115       TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7315       TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7328       TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7782 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7783       TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7788       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46G       TCGA-EJ-A46H 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-EJ-A65F       TCGA-EJ-A65J       TCGA-EJ-A6RA 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A6RC       TCGA-EJ-A7NH       TCGA-EJ-A7NJ       TCGA-EJ-A7NK 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A7NM       TCGA-EJ-A8FN       TCGA-EJ-A8FO       TCGA-EJ-A8FP 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-EJ-A8FU       TCGA-EJ-AB20       TCGA-EJ-AB27       TCGA-FC-7708 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-FC-7961       TCGA-FC-A8O0       TCGA-G9-6329       TCGA-G9-6333 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6336       TCGA-G9-6338       TCGA-G9-6339       TCGA-G9-6342 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6347       TCGA-G9-6351       TCGA-G9-6353       TCGA-G9-6354 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6361       TCGA-G9-6365       TCGA-G9-6369       TCGA-G9-6377 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-6379       TCGA-G9-6498       TCGA-G9-6499       TCGA-G9-7509 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-7510       TCGA-G9-7519       TCGA-G9-7521       TCGA-G9-7522 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-G9-7523       TCGA-G9-A9S0       TCGA-G9-A9S4       TCGA-G9-A9S7 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-H9-7775       TCGA-H9-A6BX       TCGA-HC-7075       TCGA-HC-7078 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7079       TCGA-HC-7081       TCGA-HC-7209       TCGA-HC-7210 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7212       TCGA-HC-7213       TCGA-HC-7230       TCGA-HC-7231 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7232       TCGA-HC-7233       TCGA-HC-7737       TCGA-HC-7740 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7742       TCGA-HC-7744       TCGA-HC-7745       TCGA-HC-7747 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7748       TCGA-HC-7749       TCGA-HC-7750       TCGA-HC-7817 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-7818       TCGA-HC-7820       TCGA-HC-7821       TCGA-HC-8258 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-8260       TCGA-HC-8261       TCGA-HC-8262       TCGA-HC-8264 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-8265       TCGA-HC-8266       TCGA-HC-A4ZV       TCGA-HC-A631 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-A632       TCGA-HC-A6AL       TCGA-HC-A6AN       TCGA-HC-A6AP 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-A6HX       TCGA-HC-A6HY       TCGA-HC-A76W       TCGA-HC-A8D0 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HC-A8D1       TCGA-HC-A9TE       TCGA-HC-A9TH       TCGA-HI-7168 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171       TCGA-J4-8198 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J4-8200       TCGA-J4-A67L       TCGA-J4-A67M       TCGA-J4-A67Q 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J4-A67R       TCGA-J4-A67T       TCGA-J4-A6G1       TCGA-J4-A6G3 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J4-A83I       TCGA-J4-A83J       TCGA-J4-A83K       TCGA-J4-A83L 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J4-A83M       TCGA-J4-AATV       TCGA-J4-AAU2       TCGA-J9-A52B 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J9-A52C       TCGA-J9-A52E       TCGA-J9-A8CK       TCGA-J9-A8CL 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-J9-A8CM       TCGA-KC-A4BL       TCGA-KC-A4BO       TCGA-KC-A4BR 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KC-A4BV       TCGA-KC-A7F3       TCGA-KC-A7FA       TCGA-KC-A7FE 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A59V       TCGA-KK-A59Y       TCGA-KK-A59Z       TCGA-KK-A5A1 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A6DY       TCGA-KK-A6E0       TCGA-KK-A6E1       TCGA-KK-A6E2 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A6E4       TCGA-KK-A6E5       TCGA-KK-A6E7       TCGA-KK-A7AQ 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A7B0       TCGA-KK-A7B1       TCGA-KK-A7B2       TCGA-KK-A7B3 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A7B4       TCGA-KK-A8I5       TCGA-KK-A8I6       TCGA-KK-A8I7 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A8I8       TCGA-KK-A8I9       TCGA-KK-A8IA       TCGA-KK-A8IB 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A8IC       TCGA-KK-A8IG       TCGA-KK-A8IH       TCGA-KK-A8IJ 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-KK-A8IL       TCGA-KK-A8IM       TCGA-M7-A720       TCGA-M7-A723 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-M7-A725       TCGA-MG-AAMC       TCGA-QU-A6IM       TCGA-QU-A6IO 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-QU-A6IP       TCGA-TK-A8OK       TCGA-TP-A8TT       TCGA-V1-A8MG 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-V1-A8MJ       TCGA-V1-A8MK       TCGA-V1-A8MM       TCGA-V1-A8WL 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-V1-A8WV       TCGA-V1-A8WW       TCGA-V1-A8X3       TCGA-V1-A9O5 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-V1-A9O7       TCGA-V1-A9O9       TCGA-V1-A9OA       TCGA-V1-A9OH 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-V1-A9OL       TCGA-V1-A9OQ       TCGA-V1-A9OT       TCGA-V1-A9OX 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-V1-A9Z7       TCGA-V1-A9Z8       TCGA-V1-A9Z9       TCGA-V1-A9ZG 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-V1-A9ZI       TCGA-V1-A9ZK       TCGA-V1-A9ZR       TCGA-VN-A88I 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-VN-A88K       TCGA-VN-A88L       TCGA-VN-A88P       TCGA-VP-A872 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-VP-A878       TCGA-VP-A879       TCGA-VP-A87C       TCGA-VP-A87E 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-VP-A87K       TCGA-VP-AA1N       TCGA-X4-A8KQ       TCGA-X4-A8KS 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-XA-A8JR       TCGA-XJ-A83H       TCGA-XJ-A9DI       TCGA-XJ-A9DK 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-XJ-A9DQ       TCGA-XK-AAIV       TCGA-XK-AAJ3       TCGA-XK-AAJA 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-XK-AAJT       TCGA-XK-AAJU       TCGA-XK-AAK1       TCGA-XQ-A8TB 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-Y6-A8TL       TCGA-Y6-A9XI       TCGA-YL-A8HJ       TCGA-YL-A8HK 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-YL-A8HO       TCGA-YL-A8S8       TCGA-YL-A8SF       TCGA-YL-A8SH 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-YL-A8SI       TCGA-YL-A8SJ       TCGA-YL-A8SK       TCGA-YL-A8SO 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-YL-A8SR       TCGA-YL-A9WH       TCGA-YL-A9WY       TCGA-ZG-A8QW 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-ZG-A8QX       TCGA-ZG-A8QY       TCGA-ZG-A8QZ       TCGA-ZG-A9KY 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-ZG-A9L0       TCGA-ZG-A9L1       TCGA-ZG-A9L2       TCGA-ZG-A9L4 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-ZG-A9L5       TCGA-ZG-A9L6       TCGA-ZG-A9L9       TCGA-ZG-A9LB 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-ZG-A9LM       TCGA-ZG-A9LN       TCGA-ZG-A9LS       TCGA-ZG-A9LU 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-ZG-A9LZ       TCGA-ZG-A9M4       TCGA-ZG-A9MC       TCGA-ZG-A9N3 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 
      TCGA-ZG-A9ND       TCGA-ZG-A9NI 
"MLLT10 WILD-TYPE" "MLLT10 WILD-TYPE" 

Clustering(30) Variable = ZFHX3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX3 MUTATED        3      2      6      5
  ZFHX3 WILD-TYPE    105     89     92    190
D30V1, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             3             105
  CLUS_2             2              89
  CLUS_3             6              92
  CLUS_4             5             190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX3 MUTATED        3      8      2      3
  ZFHX3 WILD-TYPE    158    132    124     68
D30V2, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             3             158
  CLUS_2             8             132
  CLUS_3             2             124
  CLUS_4             3              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFHX3 MUTATED        1      0      2      3      1      3
  ZFHX3 WILD-TYPE    105     51     43     50     57     36
D30V3, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              51
  CLUS_3             2              43
  CLUS_4             3              50
  CLUS_5             1              57
  CLUS_6             3              36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX3 MUTATED        1      3      3      3
  ZFHX3 WILD-TYPE     74    111     90     67
D30V4, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             1              74
  CLUS_2             3             111
  CLUS_3             3              90
  CLUS_4             3              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX3 MUTATED        4      3      8      1
  ZFHX3 WILD-TYPE     92    139    143    107
D30V5, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             4              92
  CLUS_2             3             139
  CLUS_3             8             143
  CLUS_4             1             107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX3 MUTATED        3     11      2
  ZFHX3 WILD-TYPE    170    197    114
D30V6, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             3             170
  CLUS_2            11             197
  CLUS_3             2             114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX3 MUTATED       11      1      0      4
  ZFHX3 WILD-TYPE    202     70    124     82
D30V7, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1            11             202
  CLUS_2             1              70
  CLUS_3             0             124
  CLUS_4             4              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX3 MUTATED        3      2      1      6      4
  ZFHX3 WILD-TYPE    145     96     58    127     52
D30V8, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             3             145
  CLUS_2             2              96
  CLUS_3             1              58
  CLUS_4             6             127
  CLUS_5             4              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX3 MUTATED        0      4      3      3
  ZFHX3 WILD-TYPE     65     89     75     81
D30V9, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             0              65
  CLUS_2             4              89
  CLUS_3             3              75
  CLUS_4             3              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX3 MUTATED        2      4      2      0      2
  ZFHX3 WILD-TYPE     73     84     67     23     63
D30V10, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             4              84
  CLUS_3             2              67
  CLUS_4             0              23
  CLUS_5             2              63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = ZMYM3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM3 MUTATED        3      0      2      7
  ZMYM3 WILD-TYPE    105     91     96    188
D31V1, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             3             105
  CLUS_2             0              91
  CLUS_3             2              96
  CLUS_4             7             188
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM3 MUTATED        1      2      2      7
  ZMYM3 WILD-TYPE    160    138    124     64
D31V2, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             1             160
  CLUS_2             2             138
  CLUS_3             2             124
  CLUS_4             7              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMYM3 MUTATED        3      1      0      2      1      3
  ZMYM3 WILD-TYPE    103     50     45     51     57     36
D31V3, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              50
  CLUS_3             0              45
  CLUS_4             2              51
  CLUS_5             1              57
  CLUS_6             3              36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM3 MUTATED        3      0      5      2
  ZMYM3 WILD-TYPE     72    114     88     68
D31V4, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             3              72
  CLUS_2             0             114
  CLUS_3             5              88
  CLUS_4             2              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM3 MUTATED        0      4      7      1
  ZMYM3 WILD-TYPE     96    138    144    107
D31V5, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             0              96
  CLUS_2             4             138
  CLUS_3             7             144
  CLUS_4             1             107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM3 MUTATED        1      7      4
  ZMYM3 WILD-TYPE    172    201    112
D31V6, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             1             172
  CLUS_2             7             201
  CLUS_3             4             112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM3 MUTATED       10      1      1      0
  ZMYM3 WILD-TYPE    203     70    123     86
D31V7, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1            10             203
  CLUS_2             1              70
  CLUS_3             1             123
  CLUS_4             0              86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM3 MUTATED        3      2      2      5      0
  ZMYM3 WILD-TYPE    145     96     57    128     56
D31V8, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             3             145
  CLUS_2             2              96
  CLUS_3             2              57
  CLUS_4             5             128
  CLUS_5             0              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM3 MUTATED        1      6      2      1
  ZMYM3 WILD-TYPE     64     87     76     83
D31V9, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             1              64
  CLUS_2             6              87
  CLUS_3             2              76
  CLUS_4             1              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM3 MUTATED        4      4      1      1      0
  ZMYM3 WILD-TYPE     71     84     68     22     65
D31V10, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             4              71
  CLUS_2             4              84
  CLUS_3             1              68
  CLUS_4             1              22
  CLUS_5             0              65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = FMN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMN1 MUTATED        2      0      1      1
  FMN1 WILD-TYPE    106     91     97    194
D32V1, multiclass
        clus
vv       FMN1 MUTATED FMN1 WILD-TYPE
  CLUS_1            2            106
  CLUS_2            0             91
  CLUS_3            1             97
  CLUS_4            1            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMN1 MUTATED        1      1      0      2
  FMN1 WILD-TYPE    160    139    126     69
D32V2, multiclass
        clus
vv       FMN1 MUTATED FMN1 WILD-TYPE
  CLUS_1            1            160
  CLUS_2            1            139
  CLUS_3            0            126
  CLUS_4            2             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FMN1 MUTATED        1      0      0      1      0      1
  FMN1 WILD-TYPE    105     51     45     52     58     38
D32V3, multiclass
        clus
vv       FMN1 MUTATED FMN1 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             51
  CLUS_3            0             45
  CLUS_4            1             52
  CLUS_5            0             58
  CLUS_6            1             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMN1 MUTATED        1      0      1      1
  FMN1 WILD-TYPE     74    114     92     69
D32V4, multiclass
        clus
vv       FMN1 MUTATED FMN1 WILD-TYPE
  CLUS_1            1             74
  CLUS_2            0            114
  CLUS_3            1             92
  CLUS_4            1             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMN1 MUTATED        0      0      3      1
  FMN1 WILD-TYPE     96    142    148    107
D32V5, multiclass
        clus
vv       FMN1 MUTATED FMN1 WILD-TYPE
  CLUS_1            0             96
  CLUS_2            0            142
  CLUS_3            3            148
  CLUS_4            1            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FMN1 MUTATED        1      2      1
  FMN1 WILD-TYPE    172    206    115
D32V6, multiclass
        clus
vv       FMN1 MUTATED FMN1 WILD-TYPE
  CLUS_1            1            172
  CLUS_2            2            206
  CLUS_3            1            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMN1 MUTATED        3      0      1      0
  FMN1 WILD-TYPE    210     71    123     86
D32V7, multiclass
        clus
vv       FMN1 MUTATED FMN1 WILD-TYPE
  CLUS_1            3            210
  CLUS_2            0             71
  CLUS_3            1            123
  CLUS_4            0             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FMN1 MUTATED        0      0      1      2      1
  FMN1 WILD-TYPE    148     98     58    131     55
D32V8, multiclass
        clus
vv       FMN1 MUTATED FMN1 WILD-TYPE
  CLUS_1            0            148
  CLUS_2            0             98
  CLUS_3            1             58
  CLUS_4            2            131
  CLUS_5            1             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FMN1 MUTATED        0      0      0      2
  FMN1 WILD-TYPE     65     93     78     82
D32V9, multiclass
[1] "Remove cluster labels:" "FMN1 MUTATED"          
clus
  FMN1 MUTATED FMN1 WILD-TYPE 
             2            318 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-2A-AAYF 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-2A-AAYO     TCGA-2A-AAYU     TCGA-4L-AA1F     TCGA-CH-5737 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-8468     TCGA-EJ-8469 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46B 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46G     TCGA-EJ-A46H 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J     TCGA-EJ-A6RA 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ     TCGA-EJ-A7NK 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FO     TCGA-EJ-A8FP 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-A8FU     TCGA-EJ-AB20     TCGA-EJ-AB27     TCGA-FC-7708 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-FC-7961     TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6333 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-G9-6347     TCGA-G9-6351     TCGA-G9-6353     TCGA-G9-6354 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-G9-6361     TCGA-G9-6365     TCGA-G9-6369     TCGA-G9-6377 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-G9-6379     TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7509 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-G9-7510     TCGA-G9-7519     TCGA-G9-7521     TCGA-G9-7522 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-G9-7523     TCGA-G9-A9S0     TCGA-G9-A9S4     TCGA-G9-A9S7 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-H9-7775     TCGA-H9-A6BX     TCGA-HC-7075     TCGA-HC-7078 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7209     TCGA-HC-7210 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-7232     TCGA-HC-7233     TCGA-HC-7737     TCGA-HC-7740 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7745     TCGA-HC-7747 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7817 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-7818     TCGA-HC-7820     TCGA-HC-7821     TCGA-HC-8258 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-8260     TCGA-HC-8261     TCGA-HC-8262     TCGA-HC-8264 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-8265     TCGA-HC-8266     TCGA-HC-A4ZV     TCGA-HC-A631 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AN     TCGA-HC-A6AP 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-A6HX     TCGA-HC-A6HY     TCGA-HC-A76W     TCGA-HC-A8D0 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-A8D1     TCGA-HC-A9TE     TCGA-HC-A9TH     TCGA-HI-7168 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171     TCGA-J4-8198 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-J4-8200     TCGA-J4-A67L     TCGA-J4-A67M     TCGA-J4-A67Q 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6G1     TCGA-J4-A6G3 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-J4-A83I     TCGA-J4-A83J     TCGA-J4-A83K     TCGA-J4-A83L 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-J4-A83M     TCGA-J4-AATV     TCGA-J4-AAU2     TCGA-J9-A52B 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-J9-A52C     TCGA-J9-A52E     TCGA-J9-A8CK     TCGA-J9-A8CL 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-KC-A4BL     TCGA-KC-A4BO     TCGA-KC-A4BR 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KC-A4BV     TCGA-KC-A7F3     TCGA-KC-A7FA     TCGA-KC-A7FE 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KK-A59V     TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A5A1 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KK-A6DY     TCGA-KK-A6E0     TCGA-KK-A6E1     TCGA-KK-A6E2 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KK-A6E4     TCGA-KK-A6E5     TCGA-KK-A6E7     TCGA-KK-A7AQ 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KK-A7B0     TCGA-KK-A7B1     TCGA-KK-A7B2     TCGA-KK-A7B3 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KK-A7B4     TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I7 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KK-A8I8     TCGA-KK-A8I9     TCGA-KK-A8IA     TCGA-KK-A8IB 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KK-A8IC     TCGA-KK-A8IG     TCGA-KK-A8IH     TCGA-KK-A8IJ 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KK-A8IL     TCGA-KK-A8IM     TCGA-M7-A720     TCGA-M7-A723 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-M7-A725     TCGA-MG-AAMC     TCGA-QU-A6IM     TCGA-QU-A6IO 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-QU-A6IP     TCGA-TK-A8OK     TCGA-TP-A8TT     TCGA-V1-A8MG 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-V1-A8MJ     TCGA-V1-A8MK     TCGA-V1-A8MM     TCGA-V1-A8WL 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-V1-A8WV     TCGA-V1-A8WW     TCGA-V1-A8X3     TCGA-V1-A9O7 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-V1-A9O9     TCGA-V1-A9OA     TCGA-V1-A9OH     TCGA-V1-A9OL 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-V1-A9OQ     TCGA-V1-A9OT     TCGA-V1-A9OX     TCGA-V1-A9Z7 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-V1-A9Z8     TCGA-V1-A9Z9     TCGA-V1-A9ZG     TCGA-V1-A9ZI 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-V1-A9ZK     TCGA-V1-A9ZR     TCGA-VN-A88I     TCGA-VN-A88K 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872     TCGA-VP-A878 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-VP-AA1N     TCGA-X4-A8KQ     TCGA-X4-A8KS     TCGA-XA-A8JR 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-XJ-A83H     TCGA-XJ-A9DI     TCGA-XJ-A9DK     TCGA-XJ-A9DQ 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-XK-AAIV     TCGA-XK-AAIW     TCGA-XK-AAJ3     TCGA-XK-AAJA 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-XK-AAJT     TCGA-XK-AAJU     TCGA-XK-AAK1     TCGA-XQ-A8TB 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-Y6-A8TL     TCGA-Y6-A9XI     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-YL-A8SI     TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SO 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-YL-A8SR     TCGA-YL-A9WH     TCGA-YL-A9WY     TCGA-ZG-A8QW 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ     TCGA-ZG-A9KY 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-ZG-A9L0     TCGA-ZG-A9L1     TCGA-ZG-A9L2     TCGA-ZG-A9L4 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-ZG-A9L5     TCGA-ZG-A9L6     TCGA-ZG-A9L9     TCGA-ZG-A9LB 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-ZG-A9LM     TCGA-ZG-A9LN     TCGA-ZG-A9LS     TCGA-ZG-A9LU 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-ZG-A9LZ     TCGA-ZG-A9M4     TCGA-ZG-A9MC     TCGA-ZG-A9N3 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-ZG-A9ND     TCGA-ZG-A9NI 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FMN1 MUTATED        0      1      0      0      1
  FMN1 WILD-TYPE     75     87     69     23     64
D32V10, multiclass
[1] "Remove cluster labels:" "FMN1 MUTATED"          
clus
  FMN1 MUTATED FMN1 WILD-TYPE 
             2            318 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-2A-AAYF 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-2A-AAYO     TCGA-2A-AAYU     TCGA-4L-AA1F     TCGA-CH-5737 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-8468     TCGA-EJ-8469 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46B 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46G     TCGA-EJ-A46H 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J     TCGA-EJ-A6RA 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ     TCGA-EJ-A7NK 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FO     TCGA-EJ-A8FP 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-EJ-A8FU     TCGA-EJ-AB20     TCGA-EJ-AB27     TCGA-FC-7708 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-FC-7961     TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6333 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-G9-6347     TCGA-G9-6351     TCGA-G9-6353     TCGA-G9-6354 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-G9-6361     TCGA-G9-6365     TCGA-G9-6369     TCGA-G9-6377 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-G9-6379     TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7509 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-G9-7510     TCGA-G9-7519     TCGA-G9-7521     TCGA-G9-7522 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-G9-7523     TCGA-G9-A9S0     TCGA-G9-A9S4     TCGA-G9-A9S7 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-H9-7775     TCGA-H9-A6BX     TCGA-HC-7075     TCGA-HC-7078 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7209     TCGA-HC-7210 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-7232     TCGA-HC-7233     TCGA-HC-7737     TCGA-HC-7740 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7745     TCGA-HC-7747 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7817 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-7818     TCGA-HC-7820     TCGA-HC-7821     TCGA-HC-8258 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-8260     TCGA-HC-8261     TCGA-HC-8262     TCGA-HC-8264 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-8265     TCGA-HC-8266     TCGA-HC-A4ZV     TCGA-HC-A631 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AN     TCGA-HC-A6AP 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-A6HX     TCGA-HC-A6HY     TCGA-HC-A76W     TCGA-HC-A8D0 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HC-A8D1     TCGA-HC-A9TE     TCGA-HC-A9TH     TCGA-HI-7168 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171     TCGA-J4-8198 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-J4-8200     TCGA-J4-A67L     TCGA-J4-A67M     TCGA-J4-A67Q 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6G1     TCGA-J4-A6G3 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-J4-A83I     TCGA-J4-A83J     TCGA-J4-A83K     TCGA-J4-A83L 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-J4-A83M     TCGA-J4-AATV     TCGA-J4-AAU2     TCGA-J9-A52B 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-J9-A52C     TCGA-J9-A52E     TCGA-J9-A8CK     TCGA-J9-A8CL 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-KC-A4BL     TCGA-KC-A4BO     TCGA-KC-A4BR 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KC-A4BV     TCGA-KC-A7F3     TCGA-KC-A7FA     TCGA-KC-A7FE 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KK-A59V     TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A5A1 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KK-A6DY     TCGA-KK-A6E0     TCGA-KK-A6E1     TCGA-KK-A6E2 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KK-A6E4     TCGA-KK-A6E5     TCGA-KK-A6E7     TCGA-KK-A7AQ 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KK-A7B0     TCGA-KK-A7B1     TCGA-KK-A7B2     TCGA-KK-A7B3 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KK-A7B4     TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I7 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KK-A8I8     TCGA-KK-A8I9     TCGA-KK-A8IA     TCGA-KK-A8IB 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KK-A8IC     TCGA-KK-A8IG     TCGA-KK-A8IH     TCGA-KK-A8IJ 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-KK-A8IL     TCGA-KK-A8IM     TCGA-M7-A720     TCGA-M7-A723 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-M7-A725     TCGA-MG-AAMC     TCGA-QU-A6IM     TCGA-QU-A6IO 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-QU-A6IP     TCGA-TK-A8OK     TCGA-TP-A8TT     TCGA-V1-A8MG 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-V1-A8MJ     TCGA-V1-A8MK     TCGA-V1-A8MM     TCGA-V1-A8WL 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-V1-A8WV     TCGA-V1-A8WW     TCGA-V1-A8X3     TCGA-V1-A9O7 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-V1-A9O9     TCGA-V1-A9OA     TCGA-V1-A9OH     TCGA-V1-A9OL 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-V1-A9OQ     TCGA-V1-A9OT     TCGA-V1-A9OX     TCGA-V1-A9Z7 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-V1-A9Z8     TCGA-V1-A9Z9     TCGA-V1-A9ZG     TCGA-V1-A9ZI 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-V1-A9ZK     TCGA-V1-A9ZR     TCGA-VN-A88I     TCGA-VN-A88K 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872     TCGA-VP-A878 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-VP-AA1N     TCGA-X4-A8KQ     TCGA-X4-A8KS     TCGA-XA-A8JR 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-XJ-A83H     TCGA-XJ-A9DI     TCGA-XJ-A9DK     TCGA-XJ-A9DQ 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-XK-AAIV     TCGA-XK-AAIW     TCGA-XK-AAJ3     TCGA-XK-AAJA 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-XK-AAJT     TCGA-XK-AAJU     TCGA-XK-AAK1     TCGA-XQ-A8TB 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-Y6-A8TL     TCGA-Y6-A9XI     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-YL-A8SI     TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SO 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-YL-A8SR     TCGA-YL-A9WH     TCGA-YL-A9WY     TCGA-ZG-A8QW 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ     TCGA-ZG-A9KY 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-ZG-A9L0     TCGA-ZG-A9L1     TCGA-ZG-A9L2     TCGA-ZG-A9L4 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-ZG-A9L5     TCGA-ZG-A9L6     TCGA-ZG-A9L9     TCGA-ZG-A9LB 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-ZG-A9LM     TCGA-ZG-A9LN     TCGA-ZG-A9LS     TCGA-ZG-A9LU 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-ZG-A9LZ     TCGA-ZG-A9M4     TCGA-ZG-A9MC     TCGA-ZG-A9N3 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 
    TCGA-ZG-A9ND     TCGA-ZG-A9NI 
"FMN1 WILD-TYPE" "FMN1 WILD-TYPE" 

Clustering(33) Variable = AKT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        1      0      1      1
  AKT1 WILD-TYPE    107     91     97    194
D33V1, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            1            107
  CLUS_2            0             91
  CLUS_3            1             97
  CLUS_4            1            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        0      0      3      0
  AKT1 WILD-TYPE    161    140    123     71
D33V2, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            0            161
  CLUS_2            0            140
  CLUS_3            3            123
  CLUS_4            0             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AKT1 MUTATED        0      0      0      1      0      0
  AKT1 WILD-TYPE    106     51     45     52     58     39
D33V3, multiclass
[1] "Remove cluster labels:" "AKT1 MUTATED"          
clus
  AKT1 MUTATED AKT1 WILD-TYPE 
             1            351 
    TCGA-2A-A8VL     TCGA-2A-A8VO     TCGA-2A-A8VT     TCGA-2A-A8VV 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-2A-A8VX     TCGA-2A-A8W1     TCGA-2A-A8W3     TCGA-2A-AAYF 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-2A-AAYO     TCGA-2A-AAYU     TCGA-4L-AA1F     TCGA-CH-5737 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740     TCGA-CH-5741 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745     TCGA-CH-5748 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752     TCGA-CH-5753 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762     TCGA-CH-5763 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766     TCGA-CH-5767 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5768     TCGA-CH-5769     TCGA-CH-5771     TCGA-CH-5772 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5531     TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7125     TCGA-EJ-7218     TCGA-EJ-7312     TCGA-EJ-7314 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7318     TCGA-EJ-7321 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7325     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7789 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793     TCGA-EJ-7794 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469     TCGA-EJ-8470 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-8474     TCGA-EJ-A46B     TCGA-EJ-A46D     TCGA-EJ-A46E 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A46F     TCGA-EJ-A46G     TCGA-EJ-A65B     TCGA-EJ-A65D 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A65E     TCGA-EJ-A65F     TCGA-EJ-A65J     TCGA-EJ-A65M 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NF     TCGA-EJ-A7NG 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A7NH     TCGA-EJ-A7NJ     TCGA-EJ-A7NK     TCGA-EJ-A7NM 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A7NN     TCGA-EJ-A8FN     TCGA-EJ-A8FO     TCGA-EJ-A8FS 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A8FU     TCGA-EJ-AB20     TCGA-EJ-AB27     TCGA-FC-7708 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-FC-7961     TCGA-FC-A4JI     TCGA-FC-A5OB     TCGA-FC-A66V 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-FC-A6HD     TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6338 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6343     TCGA-G9-6347 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6351     TCGA-G9-6353     TCGA-G9-6356     TCGA-G9-6361 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6362     TCGA-G9-6363     TCGA-G9-6364     TCGA-G9-6365 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6366     TCGA-G9-6367     TCGA-G9-6370     TCGA-G9-6371 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6373     TCGA-G9-6377     TCGA-G9-6378     TCGA-G9-6379 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6384     TCGA-G9-6494     TCGA-G9-6496     TCGA-G9-6498 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7521     TCGA-G9-7522 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-7523     TCGA-G9-7525     TCGA-G9-A9S0     TCGA-G9-A9S4 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-A9S7     TCGA-H9-7775     TCGA-H9-A6BX     TCGA-H9-A6BY 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7077     TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7210 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7232 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7736     TCGA-HC-7740     TCGA-HC-7744 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7748     TCGA-HC-7817     TCGA-HC-8264     TCGA-HC-A76X 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67K     TCGA-J4-A67M 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-A67N     TCGA-J4-A67O     TCGA-J4-A67Q     TCGA-J4-A67R 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-A67T     TCGA-J4-A6M7     TCGA-J4-A83I     TCGA-J4-A83J 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-A83N     TCGA-J9-A52C     TCGA-J9-A52E     TCGA-J9-A8CK 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-J9-A8CN     TCGA-J9-A8CP     TCGA-KC-A4BL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KC-A4BN     TCGA-KC-A4BO     TCGA-KC-A4BR     TCGA-KC-A4BV 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KC-A7F3     TCGA-KC-A7F5     TCGA-KC-A7F6     TCGA-KC-A7FA 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KC-A7FD     TCGA-KC-A7FE     TCGA-KK-A59V     TCGA-KK-A59X 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A5A1     TCGA-KK-A6E0 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A6E3     TCGA-KK-A6E4 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A6E8     TCGA-KK-A7AP     TCGA-KK-A7AU     TCGA-KK-A7AZ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A7B0     TCGA-KK-A7B1     TCGA-KK-A7B2     TCGA-KK-A7B3 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A7B4     TCGA-KK-A8I4     TCGA-KK-A8I5     TCGA-KK-A8I6 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8I7     TCGA-KK-A8I8     TCGA-KK-A8IA     TCGA-KK-A8IB 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8IC     TCGA-KK-A8ID     TCGA-KK-A8IF     TCGA-KK-A8IH 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8II     TCGA-KK-A8IJ     TCGA-M7-A71Y     TCGA-M7-A71Z 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-M7-A720     TCGA-M7-A721     TCGA-M7-A722     TCGA-M7-A723 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-M7-A724     TCGA-M7-A725     TCGA-QU-A6IN     TCGA-QU-A6IP 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-SU-A7E7     TCGA-TK-A8OK     TCGA-TP-A8TT     TCGA-TP-A8TV 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A8MF     TCGA-V1-A8MJ     TCGA-V1-A8MU     TCGA-V1-A8WL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A8X3     TCGA-V1-A9O5     TCGA-V1-A9OH     TCGA-V1-A9OL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A9OQ     TCGA-V1-A9OT     TCGA-V1-A9OX     TCGA-V1-A9OY 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A9Z7     TCGA-V1-A9Z8     TCGA-V1-A9Z9     TCGA-V1-A9ZG 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A9ZI     TCGA-V1-A9ZR     TCGA-VN-A88I     TCGA-VN-A88K 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A875     TCGA-VP-A878 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VP-A87E     TCGA-VP-A87J     TCGA-VP-A87K     TCGA-VP-AA1N 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-WW-A8ZI     TCGA-X4-A8KQ     TCGA-XA-A8JR     TCGA-Y6-A8TL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-Y6-A9XI     TCGA-YJ-A8SW     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8HL     TCGA-YL-A8HM     TCGA-YL-A8HO     TCGA-YL-A8S8 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8S9     TCGA-YL-A8SA     TCGA-YL-A8SC     TCGA-YL-A8SF 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8SH     TCGA-YL-A8SI     TCGA-YL-A8SJ     TCGA-YL-A8SK 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8SL     TCGA-YL-A8SP     TCGA-YL-A8SQ     TCGA-YL-A8SR 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A9WI     TCGA-YL-A9WJ     TCGA-YL-A9WK     TCGA-YL-A9WL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A9WX     TCGA-YL-A9WY     TCGA-ZG-A8QW     TCGA-ZG-A8QX 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A8QY     TCGA-ZG-A8QZ     TCGA-ZG-A9KY     TCGA-ZG-A9L0 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9L1     TCGA-ZG-A9L4     TCGA-ZG-A9L5     TCGA-ZG-A9L6 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9L9     TCGA-ZG-A9LB     TCGA-ZG-A9LM     TCGA-ZG-A9LS 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9LU     TCGA-ZG-A9LY     TCGA-ZG-A9LZ     TCGA-ZG-A9M4 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9MC     TCGA-ZG-A9N3     TCGA-ZG-A9NI 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        0      0      1      0
  AKT1 WILD-TYPE     75    114     92     70
D33V4, multiclass
[1] "Remove cluster labels:" "AKT1 MUTATED"          
clus
  AKT1 MUTATED AKT1 WILD-TYPE 
             1            351 
    TCGA-2A-A8VL     TCGA-2A-A8VO     TCGA-2A-A8VT     TCGA-2A-A8VV 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-2A-A8VX     TCGA-2A-A8W1     TCGA-2A-A8W3     TCGA-2A-AAYF 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-2A-AAYO     TCGA-2A-AAYU     TCGA-4L-AA1F     TCGA-CH-5737 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740     TCGA-CH-5741 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745     TCGA-CH-5748 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752     TCGA-CH-5753 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762     TCGA-CH-5763 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766     TCGA-CH-5767 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5768     TCGA-CH-5769     TCGA-CH-5771     TCGA-CH-5772 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5531     TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7125     TCGA-EJ-7218     TCGA-EJ-7312     TCGA-EJ-7314 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7318     TCGA-EJ-7321 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7325     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7789 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793     TCGA-EJ-7794 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469     TCGA-EJ-8470 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-8474     TCGA-EJ-A46B     TCGA-EJ-A46D     TCGA-EJ-A46E 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A46F     TCGA-EJ-A46G     TCGA-EJ-A65B     TCGA-EJ-A65D 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A65E     TCGA-EJ-A65F     TCGA-EJ-A65J     TCGA-EJ-A65M 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NF     TCGA-EJ-A7NG 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A7NH     TCGA-EJ-A7NJ     TCGA-EJ-A7NK     TCGA-EJ-A7NM 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A7NN     TCGA-EJ-A8FN     TCGA-EJ-A8FO     TCGA-EJ-A8FS 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A8FU     TCGA-EJ-AB20     TCGA-EJ-AB27     TCGA-FC-7708 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-FC-7961     TCGA-FC-A4JI     TCGA-FC-A5OB     TCGA-FC-A66V 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-FC-A6HD     TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6338 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6343     TCGA-G9-6347 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6351     TCGA-G9-6353     TCGA-G9-6356     TCGA-G9-6361 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6362     TCGA-G9-6363     TCGA-G9-6364     TCGA-G9-6365 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6366     TCGA-G9-6367     TCGA-G9-6370     TCGA-G9-6371 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6373     TCGA-G9-6377     TCGA-G9-6378     TCGA-G9-6379 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6384     TCGA-G9-6494     TCGA-G9-6496     TCGA-G9-6498 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7521     TCGA-G9-7522 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-7523     TCGA-G9-7525     TCGA-G9-A9S0     TCGA-G9-A9S4 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-A9S7     TCGA-H9-7775     TCGA-H9-A6BX     TCGA-H9-A6BY 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7077     TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7210 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7232 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7736     TCGA-HC-7740     TCGA-HC-7744 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7748     TCGA-HC-7817     TCGA-HC-8264     TCGA-HC-A76X 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67K     TCGA-J4-A67M 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-A67N     TCGA-J4-A67O     TCGA-J4-A67Q     TCGA-J4-A67R 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-A67T     TCGA-J4-A6M7     TCGA-J4-A83I     TCGA-J4-A83J 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-A83N     TCGA-J9-A52C     TCGA-J9-A52E     TCGA-J9-A8CK 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-J9-A8CN     TCGA-J9-A8CP     TCGA-KC-A4BL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KC-A4BN     TCGA-KC-A4BO     TCGA-KC-A4BR     TCGA-KC-A4BV 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KC-A7F3     TCGA-KC-A7F5     TCGA-KC-A7F6     TCGA-KC-A7FA 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KC-A7FD     TCGA-KC-A7FE     TCGA-KK-A59V     TCGA-KK-A59X 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A5A1     TCGA-KK-A6E0 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A6E1     TCGA-KK-A6E2     TCGA-KK-A6E3     TCGA-KK-A6E4 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A6E8     TCGA-KK-A7AP     TCGA-KK-A7AU     TCGA-KK-A7AZ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A7B0     TCGA-KK-A7B1     TCGA-KK-A7B2     TCGA-KK-A7B3 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A7B4     TCGA-KK-A8I4     TCGA-KK-A8I5     TCGA-KK-A8I6 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8I7     TCGA-KK-A8I8     TCGA-KK-A8IA     TCGA-KK-A8IB 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8IC     TCGA-KK-A8ID     TCGA-KK-A8IF     TCGA-KK-A8IH 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8II     TCGA-KK-A8IJ     TCGA-M7-A71Y     TCGA-M7-A71Z 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-M7-A720     TCGA-M7-A721     TCGA-M7-A722     TCGA-M7-A723 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-M7-A724     TCGA-M7-A725     TCGA-QU-A6IN     TCGA-QU-A6IP 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-SU-A7E7     TCGA-TK-A8OK     TCGA-TP-A8TT     TCGA-TP-A8TV 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A8MF     TCGA-V1-A8MJ     TCGA-V1-A8MU     TCGA-V1-A8WL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A8X3     TCGA-V1-A9O5     TCGA-V1-A9OH     TCGA-V1-A9OL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A9OQ     TCGA-V1-A9OT     TCGA-V1-A9OX     TCGA-V1-A9OY 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A9Z7     TCGA-V1-A9Z8     TCGA-V1-A9Z9     TCGA-V1-A9ZG 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A9ZI     TCGA-V1-A9ZR     TCGA-VN-A88I     TCGA-VN-A88K 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A875     TCGA-VP-A878 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VP-A87E     TCGA-VP-A87J     TCGA-VP-A87K     TCGA-VP-AA1N 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-WW-A8ZI     TCGA-X4-A8KQ     TCGA-XA-A8JR     TCGA-Y6-A8TL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-Y6-A9XI     TCGA-YJ-A8SW     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8HL     TCGA-YL-A8HM     TCGA-YL-A8HO     TCGA-YL-A8S8 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8S9     TCGA-YL-A8SA     TCGA-YL-A8SC     TCGA-YL-A8SF 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8SH     TCGA-YL-A8SI     TCGA-YL-A8SJ     TCGA-YL-A8SK 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8SL     TCGA-YL-A8SP     TCGA-YL-A8SQ     TCGA-YL-A8SR 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A9WI     TCGA-YL-A9WJ     TCGA-YL-A9WK     TCGA-YL-A9WL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A9WX     TCGA-YL-A9WY     TCGA-ZG-A8QW     TCGA-ZG-A8QX 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A8QY     TCGA-ZG-A8QZ     TCGA-ZG-A9KY     TCGA-ZG-A9L0 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9L1     TCGA-ZG-A9L4     TCGA-ZG-A9L5     TCGA-ZG-A9L6 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9L9     TCGA-ZG-A9LB     TCGA-ZG-A9LM     TCGA-ZG-A9LS 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9LU     TCGA-ZG-A9LY     TCGA-ZG-A9LZ     TCGA-ZG-A9M4 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9MC     TCGA-ZG-A9N3     TCGA-ZG-A9NI 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        0      2      0      1
  AKT1 WILD-TYPE     96    140    151    107
D33V5, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            0             96
  CLUS_2            2            140
  CLUS_3            0            151
  CLUS_4            1            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKT1 MUTATED        0      1      2
  AKT1 WILD-TYPE    173    207    114
D33V6, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            0            173
  CLUS_2            1            207
  CLUS_3            2            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        1      1      1      0
  AKT1 WILD-TYPE    212     70    123     86
D33V7, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            1            212
  CLUS_2            1             70
  CLUS_3            1            123
  CLUS_4            0             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKT1 MUTATED        1      1      0      1      0
  AKT1 WILD-TYPE    147     97     59    132     56
D33V8, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            1            147
  CLUS_2            1             97
  CLUS_3            0             59
  CLUS_4            1            132
  CLUS_5            0             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        0      2      0      0
  AKT1 WILD-TYPE     65     91     78     84
D33V9, multiclass
[1] "Remove cluster labels:" "AKT1 MUTATED"          
clus
  AKT1 MUTATED AKT1 WILD-TYPE 
             2            318 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-2A-AAYF 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-2A-AAYO     TCGA-2A-AAYU     TCGA-4L-AA1F     TCGA-CH-5737 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A46B     TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46G 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FO 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A8FP     TCGA-EJ-A8FU     TCGA-EJ-AB20     TCGA-EJ-AB27 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A8O0     TCGA-G9-6329 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6339 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6342     TCGA-G9-6347     TCGA-G9-6351     TCGA-G9-6353 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6361     TCGA-G9-6365     TCGA-G9-6369 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6377     TCGA-G9-6379     TCGA-G9-6498     TCGA-G9-6499 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-7509     TCGA-G9-7510     TCGA-G9-7519     TCGA-G9-7521 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-A9S0     TCGA-G9-A9S4 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-A9S7     TCGA-H9-7775     TCGA-H9-A6BX     TCGA-HC-7075 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7209 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7210     TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7231     TCGA-HC-7232     TCGA-HC-7233     TCGA-HC-7737 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7745 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7820     TCGA-HC-7821 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-8258     TCGA-HC-8260     TCGA-HC-8261     TCGA-HC-8262 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-8264     TCGA-HC-8265     TCGA-HC-8266     TCGA-HC-A4ZV 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-A631     TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AN 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-A6AP     TCGA-HC-A6HX     TCGA-HC-A6HY     TCGA-HC-A76W 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-A8D0     TCGA-HC-A8D1     TCGA-HC-A9TE     TCGA-HC-A9TH 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67L     TCGA-J4-A67M 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-A67Q     TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6G1 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-A6G3     TCGA-J4-A83I     TCGA-J4-A83J     TCGA-J4-A83K 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-A83L     TCGA-J4-AATV     TCGA-J4-AAU2     TCGA-J9-A52B 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J9-A52C     TCGA-J9-A52E     TCGA-J9-A8CK     TCGA-J9-A8CL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-KC-A4BL     TCGA-KC-A4BO     TCGA-KC-A4BR 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KC-A4BV     TCGA-KC-A7F3     TCGA-KC-A7FA     TCGA-KC-A7FE 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A59V     TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A5A1 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A6DY     TCGA-KK-A6E0     TCGA-KK-A6E1     TCGA-KK-A6E2 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A6E4     TCGA-KK-A6E5     TCGA-KK-A6E7     TCGA-KK-A7AQ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A7B0     TCGA-KK-A7B1     TCGA-KK-A7B2     TCGA-KK-A7B3 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A7B4     TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I7 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8I8     TCGA-KK-A8I9     TCGA-KK-A8IA     TCGA-KK-A8IB 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8IC     TCGA-KK-A8IG     TCGA-KK-A8IH     TCGA-KK-A8IJ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8IL     TCGA-KK-A8IM     TCGA-M7-A720     TCGA-M7-A723 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-M7-A725     TCGA-MG-AAMC     TCGA-QU-A6IM     TCGA-QU-A6IO 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-QU-A6IP     TCGA-TK-A8OK     TCGA-TP-A8TT     TCGA-V1-A8MG 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A8MJ     TCGA-V1-A8MK     TCGA-V1-A8MM     TCGA-V1-A8WL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A8WV     TCGA-V1-A8X3     TCGA-V1-A9O5     TCGA-V1-A9O7 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A9O9     TCGA-V1-A9OA     TCGA-V1-A9OH     TCGA-V1-A9OL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A9OQ     TCGA-V1-A9OT     TCGA-V1-A9OX     TCGA-V1-A9Z7 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A9Z8     TCGA-V1-A9Z9     TCGA-V1-A9ZG     TCGA-V1-A9ZI 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A9ZK     TCGA-V1-A9ZR     TCGA-VN-A88I     TCGA-VN-A88K 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872     TCGA-VP-A878 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VP-AA1N     TCGA-X4-A8KQ     TCGA-X4-A8KS     TCGA-XA-A8JR 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-XJ-A83H     TCGA-XJ-A9DI     TCGA-XJ-A9DK     TCGA-XJ-A9DQ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-XK-AAIV     TCGA-XK-AAIW     TCGA-XK-AAJ3     TCGA-XK-AAJA 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-XK-AAJT     TCGA-XK-AAJU     TCGA-XK-AAK1     TCGA-XQ-A8TB 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-Y6-A8TL     TCGA-Y6-A9XI     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8SI     TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SO 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8SR     TCGA-YL-A9WH     TCGA-YL-A9WY     TCGA-ZG-A8QW 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ     TCGA-ZG-A9KY 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9L0     TCGA-ZG-A9L1     TCGA-ZG-A9L2     TCGA-ZG-A9L4 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9L5     TCGA-ZG-A9L6     TCGA-ZG-A9L9     TCGA-ZG-A9LB 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9LM     TCGA-ZG-A9LN     TCGA-ZG-A9LS     TCGA-ZG-A9LU 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9LZ     TCGA-ZG-A9M4     TCGA-ZG-A9MC     TCGA-ZG-A9N3 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9ND     TCGA-ZG-A9NI 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKT1 MUTATED        1      1      0      0      0
  AKT1 WILD-TYPE     74     87     69     23     65
D33V10, multiclass
[1] "Remove cluster labels:" "AKT1 MUTATED"          
clus
  AKT1 MUTATED AKT1 WILD-TYPE 
             2            318 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-2A-AAYF 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-2A-AAYO     TCGA-2A-AAYU     TCGA-4L-AA1F     TCGA-CH-5737 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A46B     TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46G 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FO 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-EJ-A8FP     TCGA-EJ-A8FU     TCGA-EJ-AB20     TCGA-EJ-AB27 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A8O0     TCGA-G9-6329 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6339 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6342     TCGA-G9-6347     TCGA-G9-6351     TCGA-G9-6353 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6361     TCGA-G9-6365     TCGA-G9-6369 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-6377     TCGA-G9-6379     TCGA-G9-6498     TCGA-G9-6499 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-7509     TCGA-G9-7510     TCGA-G9-7519     TCGA-G9-7521 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-A9S0     TCGA-G9-A9S4 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-G9-A9S7     TCGA-H9-7775     TCGA-H9-A6BX     TCGA-HC-7075 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7209 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7210     TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7231     TCGA-HC-7232     TCGA-HC-7233     TCGA-HC-7737 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7745 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7820     TCGA-HC-7821 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-8258     TCGA-HC-8260     TCGA-HC-8261     TCGA-HC-8262 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-8264     TCGA-HC-8265     TCGA-HC-8266     TCGA-HC-A4ZV 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-A631     TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AN 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-A6AP     TCGA-HC-A6HX     TCGA-HC-A6HY     TCGA-HC-A76W 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HC-A8D0     TCGA-HC-A8D1     TCGA-HC-A9TE     TCGA-HC-A9TH 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67L     TCGA-J4-A67M 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-A67Q     TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6G1 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-A6G3     TCGA-J4-A83I     TCGA-J4-A83J     TCGA-J4-A83K 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J4-A83L     TCGA-J4-AATV     TCGA-J4-AAU2     TCGA-J9-A52B 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J9-A52C     TCGA-J9-A52E     TCGA-J9-A8CK     TCGA-J9-A8CL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-KC-A4BL     TCGA-KC-A4BO     TCGA-KC-A4BR 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KC-A4BV     TCGA-KC-A7F3     TCGA-KC-A7FA     TCGA-KC-A7FE 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A59V     TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A5A1 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A6DY     TCGA-KK-A6E0     TCGA-KK-A6E1     TCGA-KK-A6E2 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A6E4     TCGA-KK-A6E5     TCGA-KK-A6E7     TCGA-KK-A7AQ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A7B0     TCGA-KK-A7B1     TCGA-KK-A7B2     TCGA-KK-A7B3 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A7B4     TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I7 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8I8     TCGA-KK-A8I9     TCGA-KK-A8IA     TCGA-KK-A8IB 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8IC     TCGA-KK-A8IG     TCGA-KK-A8IH     TCGA-KK-A8IJ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-KK-A8IL     TCGA-KK-A8IM     TCGA-M7-A720     TCGA-M7-A723 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-M7-A725     TCGA-MG-AAMC     TCGA-QU-A6IM     TCGA-QU-A6IO 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-QU-A6IP     TCGA-TK-A8OK     TCGA-TP-A8TT     TCGA-V1-A8MG 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A8MJ     TCGA-V1-A8MK     TCGA-V1-A8MM     TCGA-V1-A8WL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A8WV     TCGA-V1-A8X3     TCGA-V1-A9O5     TCGA-V1-A9O7 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A9O9     TCGA-V1-A9OA     TCGA-V1-A9OH     TCGA-V1-A9OL 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A9OQ     TCGA-V1-A9OT     TCGA-V1-A9OX     TCGA-V1-A9Z7 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A9Z8     TCGA-V1-A9Z9     TCGA-V1-A9ZG     TCGA-V1-A9ZI 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-V1-A9ZK     TCGA-V1-A9ZR     TCGA-VN-A88I     TCGA-VN-A88K 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872     TCGA-VP-A878 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-VP-AA1N     TCGA-X4-A8KQ     TCGA-X4-A8KS     TCGA-XA-A8JR 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-XJ-A83H     TCGA-XJ-A9DI     TCGA-XJ-A9DK     TCGA-XJ-A9DQ 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-XK-AAIV     TCGA-XK-AAIW     TCGA-XK-AAJ3     TCGA-XK-AAJA 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-XK-AAJT     TCGA-XK-AAJU     TCGA-XK-AAK1     TCGA-XQ-A8TB 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-Y6-A8TL     TCGA-Y6-A9XI     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8SI     TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SO 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-YL-A8SR     TCGA-YL-A9WH     TCGA-YL-A9WY     TCGA-ZG-A8QW 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ     TCGA-ZG-A9KY 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9L0     TCGA-ZG-A9L1     TCGA-ZG-A9L2     TCGA-ZG-A9L4 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9L5     TCGA-ZG-A9L6     TCGA-ZG-A9L9     TCGA-ZG-A9LB 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9LM     TCGA-ZG-A9LN     TCGA-ZG-A9LS     TCGA-ZG-A9LU 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9LZ     TCGA-ZG-A9M4     TCGA-ZG-A9MC     TCGA-ZG-A9N3 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 
    TCGA-ZG-A9ND     TCGA-ZG-A9NI 
"AKT1 WILD-TYPE" "AKT1 WILD-TYPE" 

Clustering(34) Variable = ATM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        2      2      3     15
  ATM WILD-TYPE    106     89     95    180
D34V1, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           2           106
  CLUS_2           2            89
  CLUS_3           3            95
  CLUS_4          15           180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        4     10      6      2
  ATM WILD-TYPE    157    130    120     69
D34V2, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           4           157
  CLUS_2          10           130
  CLUS_3           6           120
  CLUS_4           2            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATM MUTATED        3      3      2      3      4      2
  ATM WILD-TYPE    103     48     43     50     54     37
D34V3, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3           103
  CLUS_2           3            48
  CLUS_3           2            43
  CLUS_4           3            50
  CLUS_5           4            54
  CLUS_6           2            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        3      5      4      5
  ATM WILD-TYPE     72    109     89     65
D34V4, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3            72
  CLUS_2           5           109
  CLUS_3           4            89
  CLUS_4           5            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        3      4     11      4
  ATM WILD-TYPE     93    138    140    104
D34V5, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3            93
  CLUS_2           4           138
  CLUS_3          11           140
  CLUS_4           4           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        3     15      4
  ATM WILD-TYPE    170    193    112
D34V6, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3           170
  CLUS_2          15           193
  CLUS_3           4           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED       10      6      4      2
  ATM WILD-TYPE    203     65    120     84
D34V7, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          10           203
  CLUS_2           6            65
  CLUS_3           4           120
  CLUS_4           2            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED        3      8      2      6      3
  ATM WILD-TYPE    145     90     57    127     53
D34V8, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3           145
  CLUS_2           8            90
  CLUS_3           2            57
  CLUS_4           6           127
  CLUS_5           3            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        2      4      6      4
  ATM WILD-TYPE     63     89     72     80
D34V9, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           2            63
  CLUS_2           4            89
  CLUS_3           6            72
  CLUS_4           4            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED        2      3      6      1      4
  ATM WILD-TYPE     73     85     63     22     61
D34V10, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           2            73
  CLUS_2           3            85
  CLUS_3           6            63
  CLUS_4           1            22
  CLUS_5           4            61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = STRC MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STRC MUTATED        1      0      2      2
  STRC WILD-TYPE    107     91     96    193
D35V1, multiclass
        clus
vv       STRC MUTATED STRC WILD-TYPE
  CLUS_1            1            107
  CLUS_2            0             91
  CLUS_3            2             96
  CLUS_4            2            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STRC MUTATED        0      1      4      0
  STRC WILD-TYPE    161    139    122     71
D35V2, multiclass
        clus
vv       STRC MUTATED STRC WILD-TYPE
  CLUS_1            0            161
  CLUS_2            1            139
  CLUS_3            4            122
  CLUS_4            0             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STRC MUTATED        1      0      0      1      0      0
  STRC WILD-TYPE    105     51     45     52     58     39
D35V3, multiclass
[1] "Remove cluster labels:" "STRC MUTATED"          
clus
  STRC MUTATED STRC WILD-TYPE 
             2            350 
    TCGA-2A-A8VL     TCGA-2A-A8VO     TCGA-2A-A8VT     TCGA-2A-A8VV 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-2A-A8VX     TCGA-2A-A8W1     TCGA-2A-A8W3     TCGA-2A-AAYF 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-2A-AAYO     TCGA-2A-AAYU     TCGA-4L-AA1F     TCGA-CH-5737 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740     TCGA-CH-5741 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745     TCGA-CH-5748 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752     TCGA-CH-5754 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5761     TCGA-CH-5762     TCGA-CH-5763     TCGA-CH-5764 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5765     TCGA-CH-5766     TCGA-CH-5767     TCGA-CH-5768 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5769     TCGA-CH-5771     TCGA-CH-5772     TCGA-CH-5788 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791     TCGA-CH-5792 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495     TCGA-EJ-5496 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499     TCGA-EJ-5501 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504     TCGA-EJ-5505 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508     TCGA-EJ-5509 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512     TCGA-EJ-5514 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5518 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522     TCGA-EJ-5524 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5530 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5531     TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7125     TCGA-EJ-7218     TCGA-EJ-7312     TCGA-EJ-7314 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321     TCGA-EJ-7325 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7781 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7789     TCGA-EJ-7791 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7792     TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-8468     TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8474 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A46B     TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A46G     TCGA-EJ-A65B     TCGA-EJ-A65D     TCGA-EJ-A65E 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A65F     TCGA-EJ-A65J     TCGA-EJ-A65M     TCGA-EJ-A6RA 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A6RC     TCGA-EJ-A7NF     TCGA-EJ-A7NG     TCGA-EJ-A7NH 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A7NJ     TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A7NN 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A8FN     TCGA-EJ-A8FO     TCGA-EJ-A8FS     TCGA-EJ-A8FU 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-AB20     TCGA-EJ-AB27     TCGA-FC-7708     TCGA-FC-7961 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-FC-A4JI     TCGA-FC-A5OB     TCGA-FC-A66V     TCGA-FC-A6HD 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6338     TCGA-G9-6339 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6342     TCGA-G9-6343     TCGA-G9-6347     TCGA-G9-6351 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6353     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6363     TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6367     TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6373 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6377     TCGA-G9-6378     TCGA-G9-6379     TCGA-G9-6384 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6494     TCGA-G9-6496     TCGA-G9-6498     TCGA-G9-6499 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-7510     TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-7525     TCGA-G9-A9S0     TCGA-G9-A9S4     TCGA-G9-A9S7 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-H9-7775     TCGA-H9-A6BX     TCGA-H9-A6BY     TCGA-HC-7077 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7210     TCGA-HC-7211 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7232     TCGA-HC-7233 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7736     TCGA-HC-7740     TCGA-HC-7744     TCGA-HC-7748 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7817     TCGA-HC-8264     TCGA-HC-A76X     TCGA-HI-7168 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171     TCGA-J4-8198 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J4-8200     TCGA-J4-A67K     TCGA-J4-A67M     TCGA-J4-A67N 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J4-A67O     TCGA-J4-A67Q     TCGA-J4-A67R     TCGA-J4-A67T 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J4-A6M7     TCGA-J4-A83I     TCGA-J4-A83J     TCGA-J4-A83N 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J9-A52C     TCGA-J9-A52E     TCGA-J9-A8CK     TCGA-J9-A8CM 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J9-A8CN     TCGA-J9-A8CP     TCGA-KC-A4BL     TCGA-KC-A4BN 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KC-A4BO     TCGA-KC-A4BR     TCGA-KC-A4BV     TCGA-KC-A7F3 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KC-A7F5     TCGA-KC-A7F6     TCGA-KC-A7FA     TCGA-KC-A7FD 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KC-A7FE     TCGA-KK-A59V     TCGA-KK-A59X     TCGA-KK-A59Y 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A59Z     TCGA-KK-A5A1     TCGA-KK-A6E0     TCGA-KK-A6E1 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A6E2     TCGA-KK-A6E3     TCGA-KK-A6E4     TCGA-KK-A6E8 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A7AP     TCGA-KK-A7AU     TCGA-KK-A7AZ     TCGA-KK-A7B0 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A7B1     TCGA-KK-A7B2     TCGA-KK-A7B3     TCGA-KK-A7B4 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A8I4     TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I7 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A8I8     TCGA-KK-A8IA     TCGA-KK-A8IB     TCGA-KK-A8IC 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A8ID     TCGA-KK-A8IF     TCGA-KK-A8IH     TCGA-KK-A8II 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A8IJ     TCGA-M7-A71Y     TCGA-M7-A71Z     TCGA-M7-A720 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-M7-A721     TCGA-M7-A722     TCGA-M7-A723     TCGA-M7-A724 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-M7-A725     TCGA-QU-A6IN     TCGA-QU-A6IP     TCGA-SU-A7E7 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-TK-A8OK     TCGA-TP-A8TT     TCGA-TP-A8TV     TCGA-V1-A8MF 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A8MJ     TCGA-V1-A8MU     TCGA-V1-A8WL     TCGA-V1-A8X3 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A9O5     TCGA-V1-A9OH     TCGA-V1-A9OL     TCGA-V1-A9OQ 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A9OT     TCGA-V1-A9OX     TCGA-V1-A9OY     TCGA-V1-A9Z7 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A9Z8     TCGA-V1-A9Z9     TCGA-V1-A9ZG     TCGA-V1-A9ZI 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A9ZR     TCGA-VN-A88I     TCGA-VN-A88K     TCGA-VN-A88L 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-VN-A88P     TCGA-VP-A875     TCGA-VP-A878     TCGA-VP-A87E 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-VP-A87J     TCGA-VP-A87K     TCGA-VP-AA1N     TCGA-WW-A8ZI 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-X4-A8KQ     TCGA-XA-A8JR     TCGA-Y6-A8TL     TCGA-Y6-A9XI 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YJ-A8SW     TCGA-YL-A8HJ     TCGA-YL-A8HK     TCGA-YL-A8HL 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A8HM     TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8S9 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A8SA     TCGA-YL-A8SC     TCGA-YL-A8SF     TCGA-YL-A8SH 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A8SI     TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SL 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A8SP     TCGA-YL-A8SQ     TCGA-YL-A8SR     TCGA-YL-A9WI 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A9WJ     TCGA-YL-A9WK     TCGA-YL-A9WL     TCGA-YL-A9WX 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A9WY     TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A8QZ     TCGA-ZG-A9KY     TCGA-ZG-A9L0     TCGA-ZG-A9L1 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9L4     TCGA-ZG-A9L5     TCGA-ZG-A9L6     TCGA-ZG-A9L9 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9LB     TCGA-ZG-A9LM     TCGA-ZG-A9LS     TCGA-ZG-A9LU 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9LY     TCGA-ZG-A9LZ     TCGA-ZG-A9M4     TCGA-ZG-A9MC 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9N3     TCGA-ZG-A9NI 
"STRC WILD-TYPE" "STRC WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STRC MUTATED        0      1      1      0
  STRC WILD-TYPE     75    113     92     70
D35V4, multiclass
[1] "Remove cluster labels:" "STRC MUTATED"          
clus
  STRC MUTATED STRC WILD-TYPE 
             2            350 
    TCGA-2A-A8VL     TCGA-2A-A8VO     TCGA-2A-A8VT     TCGA-2A-A8VV 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-2A-A8VX     TCGA-2A-A8W1     TCGA-2A-A8W3     TCGA-2A-AAYF 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-2A-AAYO     TCGA-2A-AAYU     TCGA-4L-AA1F     TCGA-CH-5737 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740     TCGA-CH-5741 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745     TCGA-CH-5748 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752     TCGA-CH-5754 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5761     TCGA-CH-5762     TCGA-CH-5763     TCGA-CH-5764 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5765     TCGA-CH-5766     TCGA-CH-5767     TCGA-CH-5768 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5769     TCGA-CH-5771     TCGA-CH-5772     TCGA-CH-5788 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791     TCGA-CH-5792 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495     TCGA-EJ-5496 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499     TCGA-EJ-5501 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504     TCGA-EJ-5505 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508     TCGA-EJ-5509 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512     TCGA-EJ-5514 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5518 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522     TCGA-EJ-5524 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5530 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5531     TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7125     TCGA-EJ-7218     TCGA-EJ-7312     TCGA-EJ-7314 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321     TCGA-EJ-7325 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7781 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7789     TCGA-EJ-7791 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7792     TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-8468     TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8474 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A46B     TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A46G     TCGA-EJ-A65B     TCGA-EJ-A65D     TCGA-EJ-A65E 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A65F     TCGA-EJ-A65J     TCGA-EJ-A65M     TCGA-EJ-A6RA 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A6RC     TCGA-EJ-A7NF     TCGA-EJ-A7NG     TCGA-EJ-A7NH 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A7NJ     TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A7NN 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A8FN     TCGA-EJ-A8FO     TCGA-EJ-A8FS     TCGA-EJ-A8FU 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-AB20     TCGA-EJ-AB27     TCGA-FC-7708     TCGA-FC-7961 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-FC-A4JI     TCGA-FC-A5OB     TCGA-FC-A66V     TCGA-FC-A6HD 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-FC-A8O0     TCGA-G9-6329     TCGA-G9-6338     TCGA-G9-6339 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6342     TCGA-G9-6343     TCGA-G9-6347     TCGA-G9-6351 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6353     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6363     TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6367     TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6373 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6377     TCGA-G9-6378     TCGA-G9-6379     TCGA-G9-6384 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6494     TCGA-G9-6496     TCGA-G9-6498     TCGA-G9-6499 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-7510     TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-7525     TCGA-G9-A9S0     TCGA-G9-A9S4     TCGA-G9-A9S7 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-H9-7775     TCGA-H9-A6BX     TCGA-H9-A6BY     TCGA-HC-7077 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7210     TCGA-HC-7211 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7232     TCGA-HC-7233 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7736     TCGA-HC-7740     TCGA-HC-7744     TCGA-HC-7748 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7817     TCGA-HC-8264     TCGA-HC-A76X     TCGA-HI-7168 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171     TCGA-J4-8198 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J4-8200     TCGA-J4-A67K     TCGA-J4-A67M     TCGA-J4-A67N 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J4-A67O     TCGA-J4-A67Q     TCGA-J4-A67R     TCGA-J4-A67T 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J4-A6M7     TCGA-J4-A83I     TCGA-J4-A83J     TCGA-J4-A83N 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J9-A52C     TCGA-J9-A52E     TCGA-J9-A8CK     TCGA-J9-A8CM 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J9-A8CN     TCGA-J9-A8CP     TCGA-KC-A4BL     TCGA-KC-A4BN 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KC-A4BO     TCGA-KC-A4BR     TCGA-KC-A4BV     TCGA-KC-A7F3 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KC-A7F5     TCGA-KC-A7F6     TCGA-KC-A7FA     TCGA-KC-A7FD 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KC-A7FE     TCGA-KK-A59V     TCGA-KK-A59X     TCGA-KK-A59Y 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A59Z     TCGA-KK-A5A1     TCGA-KK-A6E0     TCGA-KK-A6E1 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A6E2     TCGA-KK-A6E3     TCGA-KK-A6E4     TCGA-KK-A6E8 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A7AP     TCGA-KK-A7AU     TCGA-KK-A7AZ     TCGA-KK-A7B0 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A7B1     TCGA-KK-A7B2     TCGA-KK-A7B3     TCGA-KK-A7B4 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A8I4     TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I7 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A8I8     TCGA-KK-A8IA     TCGA-KK-A8IB     TCGA-KK-A8IC 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A8ID     TCGA-KK-A8IF     TCGA-KK-A8IH     TCGA-KK-A8II 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A8IJ     TCGA-M7-A71Y     TCGA-M7-A71Z     TCGA-M7-A720 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-M7-A721     TCGA-M7-A722     TCGA-M7-A723     TCGA-M7-A724 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-M7-A725     TCGA-QU-A6IN     TCGA-QU-A6IP     TCGA-SU-A7E7 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-TK-A8OK     TCGA-TP-A8TT     TCGA-TP-A8TV     TCGA-V1-A8MF 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A8MJ     TCGA-V1-A8MU     TCGA-V1-A8WL     TCGA-V1-A8X3 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A9O5     TCGA-V1-A9OH     TCGA-V1-A9OL     TCGA-V1-A9OQ 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A9OT     TCGA-V1-A9OX     TCGA-V1-A9OY     TCGA-V1-A9Z7 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A9Z8     TCGA-V1-A9Z9     TCGA-V1-A9ZG     TCGA-V1-A9ZI 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A9ZR     TCGA-VN-A88I     TCGA-VN-A88K     TCGA-VN-A88L 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-VN-A88P     TCGA-VP-A875     TCGA-VP-A878     TCGA-VP-A87E 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-VP-A87J     TCGA-VP-A87K     TCGA-VP-AA1N     TCGA-WW-A8ZI 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-X4-A8KQ     TCGA-XA-A8JR     TCGA-Y6-A8TL     TCGA-Y6-A9XI 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YJ-A8SW     TCGA-YL-A8HJ     TCGA-YL-A8HK     TCGA-YL-A8HL 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A8HM     TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8S9 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A8SA     TCGA-YL-A8SC     TCGA-YL-A8SF     TCGA-YL-A8SH 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A8SI     TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SL 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A8SP     TCGA-YL-A8SQ     TCGA-YL-A8SR     TCGA-YL-A9WI 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A9WJ     TCGA-YL-A9WK     TCGA-YL-A9WL     TCGA-YL-A9WX 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A9WY     TCGA-ZG-A8QW     TCGA-ZG-A8QX     TCGA-ZG-A8QY 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A8QZ     TCGA-ZG-A9KY     TCGA-ZG-A9L0     TCGA-ZG-A9L1 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9L4     TCGA-ZG-A9L5     TCGA-ZG-A9L6     TCGA-ZG-A9L9 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9LB     TCGA-ZG-A9LM     TCGA-ZG-A9LS     TCGA-ZG-A9LU 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9LY     TCGA-ZG-A9LZ     TCGA-ZG-A9M4     TCGA-ZG-A9MC 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9N3     TCGA-ZG-A9NI 
"STRC WILD-TYPE" "STRC WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STRC MUTATED        0      3      1      1
  STRC WILD-TYPE     96    139    150    107
D35V5, multiclass
        clus
vv       STRC MUTATED STRC WILD-TYPE
  CLUS_1            0             96
  CLUS_2            3            139
  CLUS_3            1            150
  CLUS_4            1            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STRC MUTATED        0      3      2
  STRC WILD-TYPE    173    205    114
D35V6, multiclass
        clus
vv       STRC MUTATED STRC WILD-TYPE
  CLUS_1            0            173
  CLUS_2            3            205
  CLUS_3            2            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STRC MUTATED        5      0      0      0
  STRC WILD-TYPE    208     71    124     86
D35V7, multiclass
        clus
vv       STRC MUTATED STRC WILD-TYPE
  CLUS_1            5            208
  CLUS_2            0             71
  CLUS_3            0            124
  CLUS_4            0             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STRC MUTATED        0      0      2      2      1
  STRC WILD-TYPE    148     98     57    131     55
D35V8, multiclass
        clus
vv       STRC MUTATED STRC WILD-TYPE
  CLUS_1            0            148
  CLUS_2            0             98
  CLUS_3            2             57
  CLUS_4            2            131
  CLUS_5            1             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STRC MUTATED        0      2      0      0
  STRC WILD-TYPE     65     91     78     84
D35V9, multiclass
[1] "Remove cluster labels:" "STRC MUTATED"          
clus
  STRC MUTATED STRC WILD-TYPE 
             2            318 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-2A-AAYF 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-2A-AAYO     TCGA-2A-AAYU     TCGA-4L-AA1F     TCGA-CH-5737 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A46B     TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46G 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FO 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A8FP     TCGA-EJ-A8FU     TCGA-EJ-AB20     TCGA-EJ-AB27 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A8O0     TCGA-G9-6329 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6339 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6342     TCGA-G9-6347     TCGA-G9-6351     TCGA-G9-6353 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6361     TCGA-G9-6365     TCGA-G9-6369 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6377     TCGA-G9-6379     TCGA-G9-6498     TCGA-G9-6499 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-7509     TCGA-G9-7510     TCGA-G9-7519     TCGA-G9-7521 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-A9S0     TCGA-G9-A9S4 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-A9S7     TCGA-H9-7775     TCGA-H9-A6BX     TCGA-HC-7075 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7209 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7210     TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7231     TCGA-HC-7232     TCGA-HC-7233     TCGA-HC-7737 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7745 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7820     TCGA-HC-7821 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-8258     TCGA-HC-8260     TCGA-HC-8261     TCGA-HC-8262 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-8264     TCGA-HC-8265     TCGA-HC-8266     TCGA-HC-A4ZV 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-A631     TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AN 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-A6AP     TCGA-HC-A6HX     TCGA-HC-A6HY     TCGA-HC-A76W 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-A8D0     TCGA-HC-A8D1     TCGA-HC-A9TE     TCGA-HC-A9TH 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67L     TCGA-J4-A67M 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J4-A67Q     TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6G1 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J4-A6G3     TCGA-J4-A83I     TCGA-J4-A83J     TCGA-J4-A83K 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J4-A83L     TCGA-J4-A83M     TCGA-J4-AATV     TCGA-J4-AAU2 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J9-A52B     TCGA-J9-A52C     TCGA-J9-A52E     TCGA-J9-A8CK 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J9-A8CL     TCGA-J9-A8CM     TCGA-KC-A4BL     TCGA-KC-A4BO 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KC-A4BR     TCGA-KC-A4BV     TCGA-KC-A7F3     TCGA-KC-A7FA 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KC-A7FE     TCGA-KK-A59V     TCGA-KK-A59Y     TCGA-KK-A59Z 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A5A1     TCGA-KK-A6DY     TCGA-KK-A6E0     TCGA-KK-A6E1 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A6E2     TCGA-KK-A6E4     TCGA-KK-A6E5     TCGA-KK-A6E7 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A7AQ     TCGA-KK-A7B0     TCGA-KK-A7B1     TCGA-KK-A7B2 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A7B3     TCGA-KK-A7B4     TCGA-KK-A8I5     TCGA-KK-A8I6 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A8I7     TCGA-KK-A8I8     TCGA-KK-A8I9     TCGA-KK-A8IA 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A8IB     TCGA-KK-A8IC     TCGA-KK-A8IG     TCGA-KK-A8IH 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A8IJ     TCGA-KK-A8IL     TCGA-KK-A8IM     TCGA-M7-A720 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-M7-A723     TCGA-M7-A725     TCGA-MG-AAMC     TCGA-QU-A6IM 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-QU-A6IO     TCGA-QU-A6IP     TCGA-TK-A8OK     TCGA-TP-A8TT 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A8MG     TCGA-V1-A8MJ     TCGA-V1-A8MK     TCGA-V1-A8MM 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A8WL     TCGA-V1-A8WV     TCGA-V1-A8X3     TCGA-V1-A9O5 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A9O7     TCGA-V1-A9O9     TCGA-V1-A9OA     TCGA-V1-A9OH 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A9OL     TCGA-V1-A9OQ     TCGA-V1-A9OT     TCGA-V1-A9OX 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A9Z7     TCGA-V1-A9Z8     TCGA-V1-A9Z9     TCGA-V1-A9ZG 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A9ZI     TCGA-V1-A9ZK     TCGA-V1-A9ZR     TCGA-VN-A88I 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-VN-A88K     TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-VP-A878     TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-VP-A87K     TCGA-VP-AA1N     TCGA-X4-A8KQ     TCGA-X4-A8KS 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-XA-A8JR     TCGA-XJ-A83H     TCGA-XJ-A9DI     TCGA-XJ-A9DK 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-XJ-A9DQ     TCGA-XK-AAIV     TCGA-XK-AAJ3     TCGA-XK-AAJA 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-XK-AAJT     TCGA-XK-AAJU     TCGA-XK-AAK1     TCGA-XQ-A8TB 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-Y6-A8TL     TCGA-Y6-A9XI     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A8SI     TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SO 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A8SR     TCGA-YL-A9WH     TCGA-YL-A9WY     TCGA-ZG-A8QW 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ     TCGA-ZG-A9KY 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9L0     TCGA-ZG-A9L1     TCGA-ZG-A9L2     TCGA-ZG-A9L4 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9L5     TCGA-ZG-A9L6     TCGA-ZG-A9L9     TCGA-ZG-A9LB 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9LM     TCGA-ZG-A9LN     TCGA-ZG-A9LS     TCGA-ZG-A9LU 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9LZ     TCGA-ZG-A9M4     TCGA-ZG-A9MC     TCGA-ZG-A9N3 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9ND     TCGA-ZG-A9NI 
"STRC WILD-TYPE" "STRC WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STRC MUTATED        0      2      0      0      0
  STRC WILD-TYPE     75     86     69     23     65
D35V10, multiclass
[1] "Remove cluster labels:" "STRC MUTATED"          
clus
  STRC MUTATED STRC WILD-TYPE 
             2            318 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-2A-AAYF 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-2A-AAYO     TCGA-2A-AAYU     TCGA-4L-AA1F     TCGA-CH-5737 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A46B     TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46G 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FO 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-EJ-A8FP     TCGA-EJ-A8FU     TCGA-EJ-AB20     TCGA-EJ-AB27 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A8O0     TCGA-G9-6329 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6339 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6342     TCGA-G9-6347     TCGA-G9-6351     TCGA-G9-6353 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6361     TCGA-G9-6365     TCGA-G9-6369 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-6377     TCGA-G9-6379     TCGA-G9-6498     TCGA-G9-6499 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-7509     TCGA-G9-7510     TCGA-G9-7519     TCGA-G9-7521 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-A9S0     TCGA-G9-A9S4 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-G9-A9S7     TCGA-H9-7775     TCGA-H9-A6BX     TCGA-HC-7075 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7209 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7210     TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7231     TCGA-HC-7232     TCGA-HC-7233     TCGA-HC-7737 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7745 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7820     TCGA-HC-7821 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-8258     TCGA-HC-8260     TCGA-HC-8261     TCGA-HC-8262 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-8264     TCGA-HC-8265     TCGA-HC-8266     TCGA-HC-A4ZV 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-A631     TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AN 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-A6AP     TCGA-HC-A6HX     TCGA-HC-A6HY     TCGA-HC-A76W 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HC-A8D0     TCGA-HC-A8D1     TCGA-HC-A9TE     TCGA-HC-A9TH 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67L     TCGA-J4-A67M 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J4-A67Q     TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6G1 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J4-A6G3     TCGA-J4-A83I     TCGA-J4-A83J     TCGA-J4-A83K 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J4-A83L     TCGA-J4-A83M     TCGA-J4-AATV     TCGA-J4-AAU2 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J9-A52B     TCGA-J9-A52C     TCGA-J9-A52E     TCGA-J9-A8CK 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-J9-A8CL     TCGA-J9-A8CM     TCGA-KC-A4BL     TCGA-KC-A4BO 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KC-A4BR     TCGA-KC-A4BV     TCGA-KC-A7F3     TCGA-KC-A7FA 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KC-A7FE     TCGA-KK-A59V     TCGA-KK-A59Y     TCGA-KK-A59Z 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A5A1     TCGA-KK-A6DY     TCGA-KK-A6E0     TCGA-KK-A6E1 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A6E2     TCGA-KK-A6E4     TCGA-KK-A6E5     TCGA-KK-A6E7 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A7AQ     TCGA-KK-A7B0     TCGA-KK-A7B1     TCGA-KK-A7B2 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A7B3     TCGA-KK-A7B4     TCGA-KK-A8I5     TCGA-KK-A8I6 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A8I7     TCGA-KK-A8I8     TCGA-KK-A8I9     TCGA-KK-A8IA 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A8IB     TCGA-KK-A8IC     TCGA-KK-A8IG     TCGA-KK-A8IH 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-KK-A8IJ     TCGA-KK-A8IL     TCGA-KK-A8IM     TCGA-M7-A720 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-M7-A723     TCGA-M7-A725     TCGA-MG-AAMC     TCGA-QU-A6IM 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-QU-A6IO     TCGA-QU-A6IP     TCGA-TK-A8OK     TCGA-TP-A8TT 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A8MG     TCGA-V1-A8MJ     TCGA-V1-A8MK     TCGA-V1-A8MM 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A8WL     TCGA-V1-A8WV     TCGA-V1-A8X3     TCGA-V1-A9O5 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A9O7     TCGA-V1-A9O9     TCGA-V1-A9OA     TCGA-V1-A9OH 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A9OL     TCGA-V1-A9OQ     TCGA-V1-A9OT     TCGA-V1-A9OX 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A9Z7     TCGA-V1-A9Z8     TCGA-V1-A9Z9     TCGA-V1-A9ZG 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-V1-A9ZI     TCGA-V1-A9ZK     TCGA-V1-A9ZR     TCGA-VN-A88I 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-VN-A88K     TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A872 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-VP-A878     TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-VP-A87K     TCGA-VP-AA1N     TCGA-X4-A8KQ     TCGA-X4-A8KS 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-XA-A8JR     TCGA-XJ-A83H     TCGA-XJ-A9DI     TCGA-XJ-A9DK 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-XJ-A9DQ     TCGA-XK-AAIV     TCGA-XK-AAJ3     TCGA-XK-AAJA 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-XK-AAJT     TCGA-XK-AAJU     TCGA-XK-AAK1     TCGA-XQ-A8TB 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-Y6-A8TL     TCGA-Y6-A9XI     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A8SI     TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SO 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-YL-A8SR     TCGA-YL-A9WH     TCGA-YL-A9WY     TCGA-ZG-A8QW 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ     TCGA-ZG-A9KY 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9L0     TCGA-ZG-A9L1     TCGA-ZG-A9L2     TCGA-ZG-A9L4 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9L5     TCGA-ZG-A9L6     TCGA-ZG-A9L9     TCGA-ZG-A9LB 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9LM     TCGA-ZG-A9LN     TCGA-ZG-A9LS     TCGA-ZG-A9LU 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9LZ     TCGA-ZG-A9M4     TCGA-ZG-A9MC     TCGA-ZG-A9N3 
"STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" "STRC WILD-TYPE" 
    TCGA-ZG-A9ND     TCGA-ZG-A9NI 
"STRC WILD-TYPE" "STRC WILD-TYPE" 

Clustering(36) Variable = APC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED        2      0      2      6
  APC WILD-TYPE    106     91     96    189
D36V1, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           2           106
  CLUS_2           0            91
  CLUS_3           2            96
  CLUS_4           6           189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED        1      4      2      3
  APC WILD-TYPE    160    136    124     68
D36V2, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           1           160
  CLUS_2           4           136
  CLUS_3           2           124
  CLUS_4           3            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  APC MUTATED        1      0      0      0      2      1
  APC WILD-TYPE    105     51     45     53     56     38
D36V3, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           1           105
  CLUS_2           0            51
  CLUS_3           0            45
  CLUS_4           0            53
  CLUS_5           2            56
  CLUS_6           1            38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED        1      1      1      1
  APC WILD-TYPE     74    113     92     69
D36V4, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           1            74
  CLUS_2           1           113
  CLUS_3           1            92
  CLUS_4           1            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED        0      2      7      1
  APC WILD-TYPE     96    140    144    107
D36V5, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           0            96
  CLUS_2           2           140
  CLUS_3           7           144
  CLUS_4           1           107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED        1      7      2
  APC WILD-TYPE    172    201    114
D36V6, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           1           172
  CLUS_2           7           201
  CLUS_3           2           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED        7      0      1      2
  APC WILD-TYPE    206     71    123     84
D36V7, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           7           206
  CLUS_2           0            71
  CLUS_3           1           123
  CLUS_4           2            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APC MUTATED        1      1      2      4      2
  APC WILD-TYPE    147     97     57    129     54
D36V8, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           1           147
  CLUS_2           1            97
  CLUS_3           2            57
  CLUS_4           4           129
  CLUS_5           2            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED        1      3      0      1
  APC WILD-TYPE     64     90     78     83
D36V9, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           1            64
  CLUS_2           3            90
  CLUS_3           0            78
  CLUS_4           1            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APC MUTATED        2      3      0      0      0
  APC WILD-TYPE     73     85     69     23     65
D36V10, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           2            73
  CLUS_2           3            85
  CLUS_3           0            69
  CLUS_4           0            23
  CLUS_5           0            65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = ZFP36L2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        2      0      1      1
  ZFP36L2 WILD-TYPE    106     91     97    194
D37V1, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               2               106
  CLUS_2               0                91
  CLUS_3               1                97
  CLUS_4               1               194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        0      2      1      1
  ZFP36L2 WILD-TYPE    161    138    125     70
D37V2, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               0               161
  CLUS_2               2               138
  CLUS_3               1               125
  CLUS_4               1                70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFP36L2 MUTATED        0      0      1      2      0      0
  ZFP36L2 WILD-TYPE    106     51     44     51     58     39
D37V3, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               0               106
  CLUS_2               0                51
  CLUS_3               1                44
  CLUS_4               2                51
  CLUS_5               0                58
  CLUS_6               0                39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        0      1      1      1
  ZFP36L2 WILD-TYPE     75    113     92     69
D37V4, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               0                75
  CLUS_2               1               113
  CLUS_3               1                92
  CLUS_4               1                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        0      0      3      1
  ZFP36L2 WILD-TYPE     96    142    148    107
D37V5, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               0                96
  CLUS_2               0               142
  CLUS_3               3               148
  CLUS_4               1               107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED        1      3      0
  ZFP36L2 WILD-TYPE    172    205    116
D37V6, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               1               172
  CLUS_2               3               205
  CLUS_3               0               116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        2      0      1      0
  ZFP36L2 WILD-TYPE    211     71    123     86
D37V7, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               2               211
  CLUS_2               0                71
  CLUS_3               1               123
  CLUS_4               0                86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L2 MUTATED        0      0      0      2      1
  ZFP36L2 WILD-TYPE    148     98     59    131     55
D37V8, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               0               148
  CLUS_2               0                98
  CLUS_3               0                59
  CLUS_4               2               131
  CLUS_5               1                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        0      1      0      2
  ZFP36L2 WILD-TYPE     65     92     78     82
D37V9, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               0                65
  CLUS_2               1                92
  CLUS_3               0                78
  CLUS_4               2                82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L2 MUTATED        0      2      0      0      1
  ZFP36L2 WILD-TYPE     75     86     69     23     64
D37V10, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               0                75
  CLUS_2               2                86
  CLUS_3               0                69
  CLUS_4               0                23
  CLUS_5               1                64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = MYOT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOT MUTATED        1      0      2      1
  MYOT WILD-TYPE    107     91     96    194
D38V1, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            1            107
  CLUS_2            0             91
  CLUS_3            2             96
  CLUS_4            1            194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOT MUTATED        0      4      0      1
  MYOT WILD-TYPE    161    136    126     70
D38V2, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            0            161
  CLUS_2            4            136
  CLUS_3            0            126
  CLUS_4            1             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYOT MUTATED        1      0      0      0      1      1
  MYOT WILD-TYPE    105     51     45     53     57     38
D38V3, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             51
  CLUS_3            0             45
  CLUS_4            0             53
  CLUS_5            1             57
  CLUS_6            1             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOT MUTATED        0      0      1      2
  MYOT WILD-TYPE     75    114     92     68
D38V4, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            0             75
  CLUS_2            0            114
  CLUS_3            1             92
  CLUS_4            2             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOT MUTATED        1      0      4      0
  MYOT WILD-TYPE     95    142    147    108
D38V5, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            1             95
  CLUS_2            0            142
  CLUS_3            4            147
  CLUS_4            0            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYOT MUTATED        1      4      0
  MYOT WILD-TYPE    172    204    116
D38V6, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            1            172
  CLUS_2            4            204
  CLUS_3            0            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOT MUTATED        5      0      0      0
  MYOT WILD-TYPE    208     71    124     86
D38V7, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            5            208
  CLUS_2            0             71
  CLUS_3            0            124
  CLUS_4            0             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYOT MUTATED        0      1      0      4      0
  MYOT WILD-TYPE    148     97     59    129     56
D38V8, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            0            148
  CLUS_2            1             97
  CLUS_3            0             59
  CLUS_4            4            129
  CLUS_5            0             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOT MUTATED        1      2      1      0
  MYOT WILD-TYPE     64     91     77     84
D38V9, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            1             64
  CLUS_2            2             91
  CLUS_3            1             77
  CLUS_4            0             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYOT MUTATED        0      2      2      0      0
  MYOT WILD-TYPE     75     86     67     23     65
D38V10, multiclass
        clus
vv       MYOT MUTATED MYOT WILD-TYPE
  CLUS_1            0             75
  CLUS_2            2             86
  CLUS_3            2             67
  CLUS_4            0             23
  CLUS_5            0             65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = KIRREL MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL MUTATED        0      2      3      1
  KIRREL WILD-TYPE    108     89     95    194
D39V1, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              0              108
  CLUS_2              2               89
  CLUS_3              3               95
  CLUS_4              1              194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL MUTATED        2      3      0      1
  KIRREL WILD-TYPE    159    137    126     70
D39V2, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              2              159
  CLUS_2              3              137
  CLUS_3              0              126
  CLUS_4              1               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIRREL MUTATED        2      0      0      1      0      0
  KIRREL WILD-TYPE    104     51     45     52     58     39
D39V3, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               51
  CLUS_3              0               45
  CLUS_4              1               52
  CLUS_5              0               58
  CLUS_6              0               39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL MUTATED        2      0      0      1
  KIRREL WILD-TYPE     73    114     93     69
D39V4, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              2               73
  CLUS_2              0              114
  CLUS_3              0               93
  CLUS_4              1               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL MUTATED        2      2      2      0
  KIRREL WILD-TYPE     94    140    149    108
D39V5, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              2               94
  CLUS_2              2              140
  CLUS_3              2              149
  CLUS_4              0              108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIRREL MUTATED        3      3      0
  KIRREL WILD-TYPE    170    205    116
D39V6, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              3              170
  CLUS_2              3              205
  CLUS_3              0              116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL MUTATED        2      0      2      2
  KIRREL WILD-TYPE    211     71    122     84
D39V7, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              2              211
  CLUS_2              0               71
  CLUS_3              2              122
  CLUS_4              2               84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL MUTATED        3      0      0      2      1
  KIRREL WILD-TYPE    145     98     59    131     55
D39V8, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              3              145
  CLUS_2              0               98
  CLUS_3              0               59
  CLUS_4              2              131
  CLUS_5              1               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL MUTATED        1      2      0      1
  KIRREL WILD-TYPE     64     91     78     83
D39V9, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              1               64
  CLUS_2              2               91
  CLUS_3              0               78
  CLUS_4              1               83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL MUTATED        1      2      0      0      1
  KIRREL WILD-TYPE     74     86     69     23     64
D39V10, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              1               74
  CLUS_2              2               86
  CLUS_3              0               69
  CLUS_4              0               23
  CLUS_5              1               64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = PGBD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGBD2 MUTATED        0      0      2      1
  PGBD2 WILD-TYPE    108     91     96    194
D40V1, multiclass
        clus
vv       PGBD2 MUTATED PGBD2 WILD-TYPE
  CLUS_1             0             108
  CLUS_2             0              91
  CLUS_3             2              96
  CLUS_4             1             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGBD2 MUTATED        0      2      0      1
  PGBD2 WILD-TYPE    161    138    126     70
D40V2, multiclass
        clus
vv       PGBD2 MUTATED PGBD2 WILD-TYPE
  CLUS_1             0             161
  CLUS_2             2             138
  CLUS_3             0             126
  CLUS_4             1              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PGBD2 MUTATED        0      0      0      1      0      1
  PGBD2 WILD-TYPE    106     51     45     52     58     38
D40V3, multiclass
[1] "Remove cluster labels:" "PGBD2 MUTATED"         
clus
  PGBD2 MUTATED PGBD2 WILD-TYPE 
              2             350 
     TCGA-2A-A8VL      TCGA-2A-A8VO      TCGA-2A-A8VT      TCGA-2A-A8VV 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-2A-A8VX      TCGA-2A-A8W1      TCGA-2A-A8W3      TCGA-2A-AAYF 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-2A-AAYO      TCGA-2A-AAYU      TCGA-4L-AA1F      TCGA-CH-5737 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5740      TCGA-CH-5741 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CH-5743      TCGA-CH-5744      TCGA-CH-5745      TCGA-CH-5748 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5751      TCGA-CH-5752      TCGA-CH-5753 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CH-5754      TCGA-CH-5761      TCGA-CH-5762      TCGA-CH-5763 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5765      TCGA-CH-5766      TCGA-CH-5767 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CH-5768      TCGA-CH-5769      TCGA-CH-5771      TCGA-CH-5772 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CH-5788      TCGA-CH-5789      TCGA-CH-5790      TCGA-CH-5791 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494      TCGA-EJ-5495 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-5496      TCGA-EJ-5497      TCGA-EJ-5498      TCGA-EJ-5499 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-5501      TCGA-EJ-5502      TCGA-EJ-5503      TCGA-EJ-5504 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-5505      TCGA-EJ-5506      TCGA-EJ-5507      TCGA-EJ-5508 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-5509      TCGA-EJ-5510      TCGA-EJ-5511      TCGA-EJ-5512 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5515      TCGA-EJ-5516      TCGA-EJ-5517 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-5518      TCGA-EJ-5519      TCGA-EJ-5521      TCGA-EJ-5522 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-5530      TCGA-EJ-5531      TCGA-EJ-5532      TCGA-EJ-5542 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-7115      TCGA-EJ-7125      TCGA-EJ-7218      TCGA-EJ-7312 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-7314      TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7318 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-7321      TCGA-EJ-7325      TCGA-EJ-7328      TCGA-EJ-7330 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-7331      TCGA-EJ-7781      TCGA-EJ-7783      TCGA-EJ-7784 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-7785      TCGA-EJ-7786      TCGA-EJ-7788      TCGA-EJ-7789 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793      TCGA-EJ-7794 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-7797      TCGA-EJ-8468      TCGA-EJ-8469      TCGA-EJ-8470 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-8474      TCGA-EJ-A46B      TCGA-EJ-A46D      TCGA-EJ-A46E 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-A46F      TCGA-EJ-A46G      TCGA-EJ-A65B      TCGA-EJ-A65D 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-A65E      TCGA-EJ-A65F      TCGA-EJ-A65J      TCGA-EJ-A65M 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-A6RA      TCGA-EJ-A6RC      TCGA-EJ-A7NF      TCGA-EJ-A7NG 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-A7NH      TCGA-EJ-A7NJ      TCGA-EJ-A7NK      TCGA-EJ-A7NM 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-A7NN      TCGA-EJ-A8FN      TCGA-EJ-A8FO      TCGA-EJ-A8FS 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-A8FU      TCGA-EJ-AB20      TCGA-EJ-AB27      TCGA-FC-7708 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FC-7961      TCGA-FC-A4JI      TCGA-FC-A5OB      TCGA-FC-A66V 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FC-A6HD      TCGA-FC-A8O0      TCGA-G9-6329      TCGA-G9-6338 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6343      TCGA-G9-6347 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-6351      TCGA-G9-6353      TCGA-G9-6356      TCGA-G9-6361 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-6362      TCGA-G9-6363      TCGA-G9-6364      TCGA-G9-6365 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-6366      TCGA-G9-6367      TCGA-G9-6370      TCGA-G9-6371 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-6373      TCGA-G9-6377      TCGA-G9-6378      TCGA-G9-6379 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-6384      TCGA-G9-6494      TCGA-G9-6496      TCGA-G9-6498 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7521      TCGA-G9-7522 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-7523      TCGA-G9-7525      TCGA-G9-A9S0      TCGA-G9-A9S4 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-A9S7      TCGA-H9-7775      TCGA-H9-A6BX      TCGA-H9-A6BY 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HC-7077      TCGA-HC-7079      TCGA-HC-7081      TCGA-HC-7210 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HC-7211      TCGA-HC-7212      TCGA-HC-7213      TCGA-HC-7232 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HC-7233      TCGA-HC-7736      TCGA-HC-7740      TCGA-HC-7744 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HC-7748      TCGA-HC-7817      TCGA-HC-8264      TCGA-HC-A76X 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HI-7168      TCGA-HI-7169      TCGA-HI-7170      TCGA-HI-7171 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-J4-8198      TCGA-J4-8200      TCGA-J4-A67K      TCGA-J4-A67M 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-J4-A67N      TCGA-J4-A67O      TCGA-J4-A67Q      TCGA-J4-A67R 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-J4-A67T      TCGA-J4-A6M7      TCGA-J4-A83I      TCGA-J4-A83J 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-J4-A83N      TCGA-J9-A52C      TCGA-J9-A52E      TCGA-J9-A8CK 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-J9-A8CM      TCGA-J9-A8CN      TCGA-J9-A8CP      TCGA-KC-A4BL 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KC-A4BN      TCGA-KC-A4BO      TCGA-KC-A4BR      TCGA-KC-A4BV 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KC-A7F3      TCGA-KC-A7F5      TCGA-KC-A7F6      TCGA-KC-A7FA 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KC-A7FD      TCGA-KC-A7FE      TCGA-KK-A59X      TCGA-KK-A59Y 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KK-A59Z      TCGA-KK-A5A1      TCGA-KK-A6E0      TCGA-KK-A6E1 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KK-A6E2      TCGA-KK-A6E3      TCGA-KK-A6E4      TCGA-KK-A6E8 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KK-A7AP      TCGA-KK-A7AU      TCGA-KK-A7AZ      TCGA-KK-A7B0 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KK-A7B1      TCGA-KK-A7B2      TCGA-KK-A7B3      TCGA-KK-A7B4 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KK-A8I4      TCGA-KK-A8I5      TCGA-KK-A8I6      TCGA-KK-A8I7 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KK-A8I8      TCGA-KK-A8IA      TCGA-KK-A8IB      TCGA-KK-A8IC 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KK-A8ID      TCGA-KK-A8IF      TCGA-KK-A8IH      TCGA-KK-A8II 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KK-A8IJ      TCGA-M7-A71Y      TCGA-M7-A71Z      TCGA-M7-A720 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-M7-A721      TCGA-M7-A722      TCGA-M7-A723      TCGA-M7-A724 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-M7-A725      TCGA-QU-A6IN      TCGA-QU-A6IP      TCGA-SU-A7E7 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-TK-A8OK      TCGA-TP-A8TT      TCGA-TP-A8TV      TCGA-V1-A8MF 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-V1-A8MJ      TCGA-V1-A8MU      TCGA-V1-A8WL      TCGA-V1-A8X3 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-V1-A9O5      TCGA-V1-A9OH      TCGA-V1-A9OL      TCGA-V1-A9OQ 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-V1-A9OT      TCGA-V1-A9OX      TCGA-V1-A9OY      TCGA-V1-A9Z7 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-V1-A9Z8      TCGA-V1-A9Z9      TCGA-V1-A9ZG      TCGA-V1-A9ZI 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-V1-A9ZR      TCGA-VN-A88I      TCGA-VN-A88K      TCGA-VN-A88L 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-VN-A88P      TCGA-VP-A875      TCGA-VP-A878      TCGA-VP-A87E 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-VP-A87J      TCGA-VP-A87K      TCGA-VP-AA1N      TCGA-WW-A8ZI 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-X4-A8KQ      TCGA-XA-A8JR      TCGA-Y6-A8TL      TCGA-Y6-A9XI 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-YJ-A8SW      TCGA-YL-A8HJ      TCGA-YL-A8HK      TCGA-YL-A8HL 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-YL-A8HM      TCGA-YL-A8HO      TCGA-YL-A8S8      TCGA-YL-A8S9 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-YL-A8SA      TCGA-YL-A8SC      TCGA-YL-A8SF      TCGA-YL-A8SH 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-YL-A8SI      TCGA-YL-A8SJ      TCGA-YL-A8SK      TCGA-YL-A8SL 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-YL-A8SP      TCGA-YL-A8SQ      TCGA-YL-A8SR      TCGA-YL-A9WI 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-YL-A9WJ      TCGA-YL-A9WK      TCGA-YL-A9WL      TCGA-YL-A9WX 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-YL-A9WY      TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-ZG-A8QZ      TCGA-ZG-A9KY      TCGA-ZG-A9L0      TCGA-ZG-A9L1 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-ZG-A9L4      TCGA-ZG-A9L5      TCGA-ZG-A9L6      TCGA-ZG-A9L9 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-ZG-A9LB      TCGA-ZG-A9LM      TCGA-ZG-A9LS      TCGA-ZG-A9LU 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-ZG-A9LY      TCGA-ZG-A9LZ      TCGA-ZG-A9M4      TCGA-ZG-A9MC 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-ZG-A9N3      TCGA-ZG-A9NI 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGBD2 MUTATED        0      0      0      2
  PGBD2 WILD-TYPE     75    114     93     68
D40V4, multiclass
[1] "Remove cluster labels:" "PGBD2 MUTATED"         
clus
  PGBD2 MUTATED PGBD2 WILD-TYPE 
              2             350 
     TCGA-2A-A8VL      TCGA-2A-A8VO      TCGA-2A-A8VT      TCGA-2A-A8VV 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-2A-A8VX      TCGA-2A-A8W1      TCGA-2A-A8W3      TCGA-2A-AAYF 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-2A-AAYO      TCGA-2A-AAYU      TCGA-4L-AA1F      TCGA-CH-5737 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5740      TCGA-CH-5741 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CH-5743      TCGA-CH-5744      TCGA-CH-5745      TCGA-CH-5748 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CH-5750      TCGA-CH-5751      TCGA-CH-5752      TCGA-CH-5753 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CH-5754      TCGA-CH-5761      TCGA-CH-5762      TCGA-CH-5763 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CH-5764      TCGA-CH-5765      TCGA-CH-5766      TCGA-CH-5767 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CH-5768      TCGA-CH-5769      TCGA-CH-5771      TCGA-CH-5772 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CH-5788      TCGA-CH-5789      TCGA-CH-5790      TCGA-CH-5791 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494      TCGA-EJ-5495 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-5496      TCGA-EJ-5497      TCGA-EJ-5498      TCGA-EJ-5499 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-5501      TCGA-EJ-5502      TCGA-EJ-5503      TCGA-EJ-5504 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-5505      TCGA-EJ-5506      TCGA-EJ-5507      TCGA-EJ-5508 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-5509      TCGA-EJ-5510      TCGA-EJ-5511      TCGA-EJ-5512 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5515      TCGA-EJ-5516      TCGA-EJ-5517 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-5518      TCGA-EJ-5519      TCGA-EJ-5521      TCGA-EJ-5522 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-5530      TCGA-EJ-5531      TCGA-EJ-5532      TCGA-EJ-5542 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-7115      TCGA-EJ-7125      TCGA-EJ-7218      TCGA-EJ-7312 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-7314      TCGA-EJ-7315      TCGA-EJ-7317      TCGA-EJ-7318 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-7321      TCGA-EJ-7325      TCGA-EJ-7328      TCGA-EJ-7330 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-7331      TCGA-EJ-7781      TCGA-EJ-7783      TCGA-EJ-7784 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-7785      TCGA-EJ-7786      TCGA-EJ-7788      TCGA-EJ-7789 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793      TCGA-EJ-7794 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-7797      TCGA-EJ-8468      TCGA-EJ-8469      TCGA-EJ-8470 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-8474      TCGA-EJ-A46B      TCGA-EJ-A46D      TCGA-EJ-A46E 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-A46F      TCGA-EJ-A46G      TCGA-EJ-A65B      TCGA-EJ-A65D 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-A65E      TCGA-EJ-A65F      TCGA-EJ-A65J      TCGA-EJ-A65M 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-A6RA      TCGA-EJ-A6RC      TCGA-EJ-A7NF      TCGA-EJ-A7NG 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-A7NH      TCGA-EJ-A7NJ      TCGA-EJ-A7NK      TCGA-EJ-A7NM 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-A7NN      TCGA-EJ-A8FN      TCGA-EJ-A8FO      TCGA-EJ-A8FS 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EJ-A8FU      TCGA-EJ-AB20      TCGA-EJ-AB27      TCGA-FC-7708 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FC-7961      TCGA-FC-A4JI      TCGA-FC-A5OB      TCGA-FC-A66V 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FC-A6HD      TCGA-FC-A8O0      TCGA-G9-6329      TCGA-G9-6338 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6343      TCGA-G9-6347 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-6351      TCGA-G9-6353      TCGA-G9-6356      TCGA-G9-6361 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-6362      TCGA-G9-6363      TCGA-G9-6364      TCGA-G9-6365 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-6366      TCGA-G9-6367      TCGA-G9-6370      TCGA-G9-6371 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-6373      TCGA-G9-6377      TCGA-G9-6378      TCGA-G9-6379 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-6384      TCGA-G9-6494      TCGA-G9-6496      TCGA-G9-6498 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7521      TCGA-G9-7522 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-7523      TCGA-G9-7525      TCGA-G9-A9S0      TCGA-G9-A9S4 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-G9-A9S7      TCGA-H9-7775      TCGA-H9-A6BX      TCGA-H9-A6BY 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HC-7077      TCGA-HC-7079      TCGA-HC-7081      TCGA-HC-7210 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HC-7211      TCGA-HC-7212      TCGA-HC-7213      TCGA-HC-7232 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HC-7233      TCGA-HC-7736      TCGA-HC-7740      TCGA-HC-7744 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HC-7748      TCGA-HC-7817      TCGA-HC-8264      TCGA-HC-A76X 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HI-7168      TCGA-HI-7169      TCGA-HI-7170      TCGA-HI-7171 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-J4-8198      TCGA-J4-8200      TCGA-J4-A67K      TCGA-J4-A67M 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-J4-A67N      TCGA-J4-A67O      TCGA-J4-A67Q      TCGA-J4-A67R 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-J4-A67T      TCGA-J4-A6M7      TCGA-J4-A83I      TCGA-J4-A83J 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-J4-A83N      TCGA-J9-A52C      TCGA-J9-A52E      TCGA-J9-A8CK 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-J9-A8CM      TCGA-J9-A8CN      TCGA-J9-A8CP      TCGA-KC-A4BL 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KC-A4BN      TCGA-KC-A4BO      TCGA-KC-A4BR      TCGA-KC-A4BV 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KC-A7F3      TCGA-KC-A7F5      TCGA-KC-A7F6      TCGA-KC-A7FA 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KC-A7FD      TCGA-KC-A7FE      TCGA-KK-A59X      TCGA-KK-A59Y 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KK-A59Z      TCGA-KK-A5A1      TCGA-KK-A6E0      TCGA-KK-A6E1 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KK-A6E2      TCGA-KK-A6E3      TCGA-KK-A6E4      TCGA-KK-A6E8 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KK-A7AP      TCGA-KK-A7AU      TCGA-KK-A7AZ      TCGA-KK-A7B0 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KK-A7B1      TCGA-KK-A7B2      TCGA-KK-A7B3      TCGA-KK-A7B4 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KK-A8I4      TCGA-KK-A8I5      TCGA-KK-A8I6      TCGA-KK-A8I7 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KK-A8I8      TCGA-KK-A8IA      TCGA-KK-A8IB      TCGA-KK-A8IC 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KK-A8ID      TCGA-KK-A8IF      TCGA-KK-A8IH      TCGA-KK-A8II 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-KK-A8IJ      TCGA-M7-A71Y      TCGA-M7-A71Z      TCGA-M7-A720 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-M7-A721      TCGA-M7-A722      TCGA-M7-A723      TCGA-M7-A724 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-M7-A725      TCGA-QU-A6IN      TCGA-QU-A6IP      TCGA-SU-A7E7 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-TK-A8OK      TCGA-TP-A8TT      TCGA-TP-A8TV      TCGA-V1-A8MF 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-V1-A8MJ      TCGA-V1-A8MU      TCGA-V1-A8WL      TCGA-V1-A8X3 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-V1-A9O5      TCGA-V1-A9OH      TCGA-V1-A9OL      TCGA-V1-A9OQ 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-V1-A9OT      TCGA-V1-A9OX      TCGA-V1-A9OY      TCGA-V1-A9Z7 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-V1-A9Z8      TCGA-V1-A9Z9      TCGA-V1-A9ZG      TCGA-V1-A9ZI 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-V1-A9ZR      TCGA-VN-A88I      TCGA-VN-A88K      TCGA-VN-A88L 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-VN-A88P      TCGA-VP-A875      TCGA-VP-A878      TCGA-VP-A87E 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-VP-A87J      TCGA-VP-A87K      TCGA-VP-AA1N      TCGA-WW-A8ZI 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-X4-A8KQ      TCGA-XA-A8JR      TCGA-Y6-A8TL      TCGA-Y6-A9XI 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-YJ-A8SW      TCGA-YL-A8HJ      TCGA-YL-A8HK      TCGA-YL-A8HL 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-YL-A8HM      TCGA-YL-A8HO      TCGA-YL-A8S8      TCGA-YL-A8S9 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-YL-A8SA      TCGA-YL-A8SC      TCGA-YL-A8SF      TCGA-YL-A8SH 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-YL-A8SI      TCGA-YL-A8SJ      TCGA-YL-A8SK      TCGA-YL-A8SL 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-YL-A8SP      TCGA-YL-A8SQ      TCGA-YL-A8SR      TCGA-YL-A9WI 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-YL-A9WJ      TCGA-YL-A9WK      TCGA-YL-A9WL      TCGA-YL-A9WX 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-YL-A9WY      TCGA-ZG-A8QW      TCGA-ZG-A8QX      TCGA-ZG-A8QY 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-ZG-A8QZ      TCGA-ZG-A9KY      TCGA-ZG-A9L0      TCGA-ZG-A9L1 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-ZG-A9L4      TCGA-ZG-A9L5      TCGA-ZG-A9L6      TCGA-ZG-A9L9 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-ZG-A9LB      TCGA-ZG-A9LM      TCGA-ZG-A9LS      TCGA-ZG-A9LU 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-ZG-A9LY      TCGA-ZG-A9LZ      TCGA-ZG-A9M4      TCGA-ZG-A9MC 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-ZG-A9N3      TCGA-ZG-A9NI 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGBD2 MUTATED        0      0      3      0
  PGBD2 WILD-TYPE     96    142    148    108
D40V5, multiclass
        clus
vv       PGBD2 MUTATED PGBD2 WILD-TYPE
  CLUS_1             0              96
  CLUS_2             0             142
  CLUS_3             3             148
  CLUS_4             0             108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PGBD2 MUTATED        0      3      0
  PGBD2 WILD-TYPE    173    205    116
D40V6, multiclass
        clus
vv       PGBD2 MUTATED PGBD2 WILD-TYPE
  CLUS_1             0             173
  CLUS_2             3             205
  CLUS_3             0             116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGBD2 MUTATED        2      0      0      1
  PGBD2 WILD-TYPE    211     71    124     85
D40V7, multiclass
        clus
vv       PGBD2 MUTATED PGBD2 WILD-TYPE
  CLUS_1             2             211
  CLUS_2             0              71
  CLUS_3             0             124
  CLUS_4             1              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGBD2 MUTATED        0      0      0      2      1
  PGBD2 WILD-TYPE    148     98     59    131     55
D40V8, multiclass
        clus
vv       PGBD2 MUTATED PGBD2 WILD-TYPE
  CLUS_1             0             148
  CLUS_2             0              98
  CLUS_3             0              59
  CLUS_4             2             131
  CLUS_5             1              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGBD2 MUTATED        0      2      0      1
  PGBD2 WILD-TYPE     65     91     78     83
D40V9, multiclass
        clus
vv       PGBD2 MUTATED PGBD2 WILD-TYPE
  CLUS_1             0              65
  CLUS_2             2              91
  CLUS_3             0              78
  CLUS_4             1              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGBD2 MUTATED        0      2      0      0      1
  PGBD2 WILD-TYPE     75     86     69     23     64
D40V10, multiclass
        clus
vv       PGBD2 MUTATED PGBD2 WILD-TYPE
  CLUS_1             0              75
  CLUS_2             2              86
  CLUS_3             0              69
  CLUS_4             0              23
  CLUS_5             1              64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = LOC100132247 MUTATION ANALYSIS
                        vv
clus                     CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LOC100132247 MUTATED        1      1      1      0
  LOC100132247 WILD-TYPE    107     90     97    195
D41V1, multiclass
        clus
vv       LOC100132247 MUTATED LOC100132247 WILD-TYPE
  CLUS_1                    1                    107
  CLUS_2                    1                     90
  CLUS_3                    1                     97
  CLUS_4                    0                    195
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                        vv
clus                     CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LOC100132247 MUTATED        1      1      1      0
  LOC100132247 WILD-TYPE    160    139    125     71
D41V2, multiclass
        clus
vv       LOC100132247 MUTATED LOC100132247 WILD-TYPE
  CLUS_1                    1                    160
  CLUS_2                    1                    139
  CLUS_3                    1                    125
  CLUS_4                    0                     71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                        vv
clus                     CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LOC100132247 MUTATED        0      1      0      0      0      1
  LOC100132247 WILD-TYPE    106     50     45     53     58     38
D41V3, multiclass
[1] "Remove cluster labels:" "LOC100132247 MUTATED"  
clus
  LOC100132247 MUTATED LOC100132247 WILD-TYPE 
                     2                    350 
            TCGA-2A-A8VL             TCGA-2A-A8VO             TCGA-2A-A8VT 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-2A-A8VV             TCGA-2A-A8VX             TCGA-2A-A8W1 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-2A-A8W3             TCGA-2A-AAYF             TCGA-2A-AAYO 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-2A-AAYU             TCGA-4L-AA1F             TCGA-CH-5737 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5738             TCGA-CH-5739             TCGA-CH-5740 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5741             TCGA-CH-5743             TCGA-CH-5744 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5745             TCGA-CH-5748             TCGA-CH-5750 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5751             TCGA-CH-5752             TCGA-CH-5753 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5754             TCGA-CH-5761             TCGA-CH-5762 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5763             TCGA-CH-5764             TCGA-CH-5765 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5766             TCGA-CH-5767             TCGA-CH-5768 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5769             TCGA-CH-5771             TCGA-CH-5772 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5788             TCGA-CH-5789             TCGA-CH-5790 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5791             TCGA-CH-5792             TCGA-CH-5794 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5494             TCGA-EJ-5495             TCGA-EJ-5496 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5497             TCGA-EJ-5498             TCGA-EJ-5499 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5501             TCGA-EJ-5502             TCGA-EJ-5503 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5504             TCGA-EJ-5505             TCGA-EJ-5506 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5507             TCGA-EJ-5508             TCGA-EJ-5509 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5510             TCGA-EJ-5511             TCGA-EJ-5512 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5514             TCGA-EJ-5515             TCGA-EJ-5516 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5517             TCGA-EJ-5518             TCGA-EJ-5519 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5521             TCGA-EJ-5522             TCGA-EJ-5524 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5525             TCGA-EJ-5526             TCGA-EJ-5527 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5530             TCGA-EJ-5531             TCGA-EJ-5532 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5542             TCGA-EJ-7115             TCGA-EJ-7125 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7218             TCGA-EJ-7312             TCGA-EJ-7314 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7315             TCGA-EJ-7317             TCGA-EJ-7318 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7321             TCGA-EJ-7325             TCGA-EJ-7328 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7330             TCGA-EJ-7331             TCGA-EJ-7781 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7782             TCGA-EJ-7783             TCGA-EJ-7784 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7785             TCGA-EJ-7786             TCGA-EJ-7788 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7789             TCGA-EJ-7791             TCGA-EJ-7792 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7793             TCGA-EJ-7794             TCGA-EJ-7797 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-8468             TCGA-EJ-8469             TCGA-EJ-8470 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-8474             TCGA-EJ-A46B             TCGA-EJ-A46D 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A46E             TCGA-EJ-A46F             TCGA-EJ-A46G 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A65B             TCGA-EJ-A65D             TCGA-EJ-A65F 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A65J             TCGA-EJ-A65M             TCGA-EJ-A6RA 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A6RC             TCGA-EJ-A7NF             TCGA-EJ-A7NG 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A7NH             TCGA-EJ-A7NJ             TCGA-EJ-A7NK 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A7NM             TCGA-EJ-A7NN             TCGA-EJ-A8FN 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A8FO             TCGA-EJ-A8FS             TCGA-EJ-A8FU 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-AB20             TCGA-EJ-AB27             TCGA-FC-7708 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-FC-7961             TCGA-FC-A4JI             TCGA-FC-A5OB 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-FC-A66V             TCGA-FC-A6HD             TCGA-FC-A8O0 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6329             TCGA-G9-6338             TCGA-G9-6339 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6342             TCGA-G9-6343             TCGA-G9-6347 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6351             TCGA-G9-6353             TCGA-G9-6356 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6361             TCGA-G9-6362             TCGA-G9-6363 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6364             TCGA-G9-6365             TCGA-G9-6366 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6367             TCGA-G9-6370             TCGA-G9-6371 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6373             TCGA-G9-6377             TCGA-G9-6378 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6379             TCGA-G9-6384             TCGA-G9-6494 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6496             TCGA-G9-6498             TCGA-G9-6499 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-7510             TCGA-G9-7521             TCGA-G9-7522 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-7523             TCGA-G9-7525             TCGA-G9-A9S0 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-A9S4             TCGA-G9-A9S7             TCGA-H9-7775 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-H9-A6BX             TCGA-H9-A6BY             TCGA-HC-7077 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7079             TCGA-HC-7081             TCGA-HC-7210 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7211             TCGA-HC-7212             TCGA-HC-7213 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7232             TCGA-HC-7233             TCGA-HC-7736 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7740             TCGA-HC-7744             TCGA-HC-7748 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7817             TCGA-HC-8264             TCGA-HC-A76X 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HI-7168             TCGA-HI-7169             TCGA-HI-7170 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HI-7171             TCGA-J4-8198             TCGA-J4-8200 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-A67K             TCGA-J4-A67M             TCGA-J4-A67N 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-A67O             TCGA-J4-A67Q             TCGA-J4-A67R 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-A67T             TCGA-J4-A6M7             TCGA-J4-A83I 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-A83J             TCGA-J4-A83N             TCGA-J9-A52C 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J9-A52E             TCGA-J9-A8CK             TCGA-J9-A8CM 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J9-A8CN             TCGA-J9-A8CP             TCGA-KC-A4BN 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KC-A4BO             TCGA-KC-A4BR             TCGA-KC-A4BV 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KC-A7F3             TCGA-KC-A7F5             TCGA-KC-A7F6 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KC-A7FA             TCGA-KC-A7FD             TCGA-KC-A7FE 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A59V             TCGA-KK-A59X             TCGA-KK-A59Y 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A59Z             TCGA-KK-A5A1             TCGA-KK-A6E0 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A6E1             TCGA-KK-A6E2             TCGA-KK-A6E3 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A6E4             TCGA-KK-A6E8             TCGA-KK-A7AP 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A7AU             TCGA-KK-A7AZ             TCGA-KK-A7B0 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A7B1             TCGA-KK-A7B2             TCGA-KK-A7B3 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A7B4             TCGA-KK-A8I4             TCGA-KK-A8I5 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A8I6             TCGA-KK-A8I7             TCGA-KK-A8I8 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A8IA             TCGA-KK-A8IB             TCGA-KK-A8IC 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A8ID             TCGA-KK-A8IF             TCGA-KK-A8IH 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A8II             TCGA-KK-A8IJ             TCGA-M7-A71Y 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-M7-A71Z             TCGA-M7-A720             TCGA-M7-A721 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-M7-A722             TCGA-M7-A723             TCGA-M7-A724 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-M7-A725             TCGA-QU-A6IN             TCGA-QU-A6IP 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-SU-A7E7             TCGA-TK-A8OK             TCGA-TP-A8TT 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-TP-A8TV             TCGA-V1-A8MF             TCGA-V1-A8MJ 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A8MU             TCGA-V1-A8WL             TCGA-V1-A8X3 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9O5             TCGA-V1-A9OH             TCGA-V1-A9OL 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9OQ             TCGA-V1-A9OT             TCGA-V1-A9OX 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9OY             TCGA-V1-A9Z7             TCGA-V1-A9Z8 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9Z9             TCGA-V1-A9ZG             TCGA-V1-A9ZI 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9ZR             TCGA-VN-A88I             TCGA-VN-A88K 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-VN-A88L             TCGA-VN-A88P             TCGA-VP-A875 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-VP-A878             TCGA-VP-A87E             TCGA-VP-A87J 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-VP-A87K             TCGA-VP-AA1N             TCGA-WW-A8ZI 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-X4-A8KQ             TCGA-XA-A8JR             TCGA-Y6-A8TL 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-Y6-A9XI             TCGA-YJ-A8SW             TCGA-YL-A8HJ 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8HK             TCGA-YL-A8HL             TCGA-YL-A8HM 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8HO             TCGA-YL-A8S8             TCGA-YL-A8S9 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8SA             TCGA-YL-A8SC             TCGA-YL-A8SF 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8SH             TCGA-YL-A8SI             TCGA-YL-A8SJ 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8SK             TCGA-YL-A8SL             TCGA-YL-A8SP 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8SQ             TCGA-YL-A8SR             TCGA-YL-A9WI 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A9WJ             TCGA-YL-A9WK             TCGA-YL-A9WL 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A9WX             TCGA-YL-A9WY             TCGA-ZG-A8QW 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A8QX             TCGA-ZG-A8QY             TCGA-ZG-A8QZ 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9KY             TCGA-ZG-A9L0             TCGA-ZG-A9L1 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9L4             TCGA-ZG-A9L5             TCGA-ZG-A9L6 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9L9             TCGA-ZG-A9LB             TCGA-ZG-A9LM 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9LS             TCGA-ZG-A9LU             TCGA-ZG-A9LY 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9LZ             TCGA-ZG-A9M4             TCGA-ZG-A9MC 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9N3             TCGA-ZG-A9NI 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
                        vv
clus                     CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LOC100132247 MUTATED        0      1      1      0
  LOC100132247 WILD-TYPE     75    113     92     70
D41V4, multiclass
[1] "Remove cluster labels:" "LOC100132247 MUTATED"  
clus
  LOC100132247 MUTATED LOC100132247 WILD-TYPE 
                     2                    350 
            TCGA-2A-A8VL             TCGA-2A-A8VO             TCGA-2A-A8VT 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-2A-A8VV             TCGA-2A-A8VX             TCGA-2A-A8W1 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-2A-A8W3             TCGA-2A-AAYF             TCGA-2A-AAYO 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-2A-AAYU             TCGA-4L-AA1F             TCGA-CH-5737 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5738             TCGA-CH-5739             TCGA-CH-5740 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5741             TCGA-CH-5743             TCGA-CH-5744 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5745             TCGA-CH-5748             TCGA-CH-5750 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5751             TCGA-CH-5752             TCGA-CH-5753 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5754             TCGA-CH-5761             TCGA-CH-5762 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5763             TCGA-CH-5764             TCGA-CH-5765 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5766             TCGA-CH-5767             TCGA-CH-5768 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5769             TCGA-CH-5771             TCGA-CH-5772 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5788             TCGA-CH-5789             TCGA-CH-5790 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5791             TCGA-CH-5792             TCGA-CH-5794 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5494             TCGA-EJ-5495             TCGA-EJ-5496 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5497             TCGA-EJ-5498             TCGA-EJ-5499 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5501             TCGA-EJ-5502             TCGA-EJ-5503 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5504             TCGA-EJ-5505             TCGA-EJ-5506 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
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"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5510             TCGA-EJ-5511             TCGA-EJ-5512 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5514             TCGA-EJ-5515             TCGA-EJ-5516 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
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"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5521             TCGA-EJ-5522             TCGA-EJ-5524 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5525             TCGA-EJ-5526             TCGA-EJ-5527 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5530             TCGA-EJ-5531             TCGA-EJ-5532 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5542             TCGA-EJ-7115             TCGA-EJ-7125 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7218             TCGA-EJ-7312             TCGA-EJ-7314 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7315             TCGA-EJ-7317             TCGA-EJ-7318 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
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"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7330             TCGA-EJ-7331             TCGA-EJ-7781 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
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"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7785             TCGA-EJ-7786             TCGA-EJ-7788 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7789             TCGA-EJ-7791             TCGA-EJ-7792 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7793             TCGA-EJ-7794             TCGA-EJ-7797 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-8468             TCGA-EJ-8469             TCGA-EJ-8470 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-8474             TCGA-EJ-A46B             TCGA-EJ-A46D 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A46E             TCGA-EJ-A46F             TCGA-EJ-A46G 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A65B             TCGA-EJ-A65D             TCGA-EJ-A65F 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A65J             TCGA-EJ-A65M             TCGA-EJ-A6RA 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A6RC             TCGA-EJ-A7NF             TCGA-EJ-A7NG 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A7NH             TCGA-EJ-A7NJ             TCGA-EJ-A7NK 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A7NM             TCGA-EJ-A7NN             TCGA-EJ-A8FN 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A8FO             TCGA-EJ-A8FS             TCGA-EJ-A8FU 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-AB20             TCGA-EJ-AB27             TCGA-FC-7708 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-FC-7961             TCGA-FC-A4JI             TCGA-FC-A5OB 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-FC-A66V             TCGA-FC-A6HD             TCGA-FC-A8O0 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6329             TCGA-G9-6338             TCGA-G9-6339 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6342             TCGA-G9-6343             TCGA-G9-6347 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6351             TCGA-G9-6353             TCGA-G9-6356 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6361             TCGA-G9-6362             TCGA-G9-6363 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6364             TCGA-G9-6365             TCGA-G9-6366 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6367             TCGA-G9-6370             TCGA-G9-6371 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6373             TCGA-G9-6377             TCGA-G9-6378 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6379             TCGA-G9-6384             TCGA-G9-6494 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6496             TCGA-G9-6498             TCGA-G9-6499 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-7510             TCGA-G9-7521             TCGA-G9-7522 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-7523             TCGA-G9-7525             TCGA-G9-A9S0 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-A9S4             TCGA-G9-A9S7             TCGA-H9-7775 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-H9-A6BX             TCGA-H9-A6BY             TCGA-HC-7077 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7079             TCGA-HC-7081             TCGA-HC-7210 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7211             TCGA-HC-7212             TCGA-HC-7213 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7232             TCGA-HC-7233             TCGA-HC-7736 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7740             TCGA-HC-7744             TCGA-HC-7748 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7817             TCGA-HC-8264             TCGA-HC-A76X 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HI-7168             TCGA-HI-7169             TCGA-HI-7170 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HI-7171             TCGA-J4-8198             TCGA-J4-8200 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-A67K             TCGA-J4-A67M             TCGA-J4-A67N 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-A67O             TCGA-J4-A67Q             TCGA-J4-A67R 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-A67T             TCGA-J4-A6M7             TCGA-J4-A83I 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-A83J             TCGA-J4-A83N             TCGA-J9-A52C 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J9-A52E             TCGA-J9-A8CK             TCGA-J9-A8CM 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J9-A8CN             TCGA-J9-A8CP             TCGA-KC-A4BN 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KC-A4BO             TCGA-KC-A4BR             TCGA-KC-A4BV 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KC-A7F3             TCGA-KC-A7F5             TCGA-KC-A7F6 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KC-A7FA             TCGA-KC-A7FD             TCGA-KC-A7FE 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A59V             TCGA-KK-A59X             TCGA-KK-A59Y 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A59Z             TCGA-KK-A5A1             TCGA-KK-A6E0 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A6E1             TCGA-KK-A6E2             TCGA-KK-A6E3 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A6E4             TCGA-KK-A6E8             TCGA-KK-A7AP 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A7AU             TCGA-KK-A7AZ             TCGA-KK-A7B0 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A7B1             TCGA-KK-A7B2             TCGA-KK-A7B3 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A7B4             TCGA-KK-A8I4             TCGA-KK-A8I5 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A8I6             TCGA-KK-A8I7             TCGA-KK-A8I8 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A8IA             TCGA-KK-A8IB             TCGA-KK-A8IC 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A8ID             TCGA-KK-A8IF             TCGA-KK-A8IH 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A8II             TCGA-KK-A8IJ             TCGA-M7-A71Y 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-M7-A71Z             TCGA-M7-A720             TCGA-M7-A721 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-M7-A722             TCGA-M7-A723             TCGA-M7-A724 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-M7-A725             TCGA-QU-A6IN             TCGA-QU-A6IP 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-SU-A7E7             TCGA-TK-A8OK             TCGA-TP-A8TT 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-TP-A8TV             TCGA-V1-A8MF             TCGA-V1-A8MJ 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A8MU             TCGA-V1-A8WL             TCGA-V1-A8X3 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9O5             TCGA-V1-A9OH             TCGA-V1-A9OL 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9OQ             TCGA-V1-A9OT             TCGA-V1-A9OX 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9OY             TCGA-V1-A9Z7             TCGA-V1-A9Z8 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9Z9             TCGA-V1-A9ZG             TCGA-V1-A9ZI 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9ZR             TCGA-VN-A88I             TCGA-VN-A88K 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-VN-A88L             TCGA-VN-A88P             TCGA-VP-A875 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-VP-A878             TCGA-VP-A87E             TCGA-VP-A87J 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-VP-A87K             TCGA-VP-AA1N             TCGA-WW-A8ZI 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-X4-A8KQ             TCGA-XA-A8JR             TCGA-Y6-A8TL 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-Y6-A9XI             TCGA-YJ-A8SW             TCGA-YL-A8HJ 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8HK             TCGA-YL-A8HL             TCGA-YL-A8HM 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8HO             TCGA-YL-A8S8             TCGA-YL-A8S9 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8SA             TCGA-YL-A8SC             TCGA-YL-A8SF 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8SH             TCGA-YL-A8SI             TCGA-YL-A8SJ 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8SK             TCGA-YL-A8SL             TCGA-YL-A8SP 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8SQ             TCGA-YL-A8SR             TCGA-YL-A9WI 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A9WJ             TCGA-YL-A9WK             TCGA-YL-A9WL 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A9WX             TCGA-YL-A9WY             TCGA-ZG-A8QW 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A8QX             TCGA-ZG-A8QY             TCGA-ZG-A8QZ 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9KY             TCGA-ZG-A9L0             TCGA-ZG-A9L1 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9L4             TCGA-ZG-A9L5             TCGA-ZG-A9L6 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9L9             TCGA-ZG-A9LB             TCGA-ZG-A9LM 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9LS             TCGA-ZG-A9LU             TCGA-ZG-A9LY 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9LZ             TCGA-ZG-A9M4             TCGA-ZG-A9MC 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9N3             TCGA-ZG-A9NI 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
                        vv
clus                     CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LOC100132247 MUTATED        0      1      1      1
  LOC100132247 WILD-TYPE     96    141    150    107
D41V5, multiclass
        clus
vv       LOC100132247 MUTATED LOC100132247 WILD-TYPE
  CLUS_1                    0                     96
  CLUS_2                    1                    141
  CLUS_3                    1                    150
  CLUS_4                    1                    107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                        vv
clus                     CLUS_1 CLUS_2 CLUS_3
  LOC100132247 MUTATED        1      1      1
  LOC100132247 WILD-TYPE    172    207    115
D41V6, multiclass
        clus
vv       LOC100132247 MUTATED LOC100132247 WILD-TYPE
  CLUS_1                    1                    172
  CLUS_2                    1                    207
  CLUS_3                    1                    115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                        vv
clus                     CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LOC100132247 MUTATED        2      0      1      0
  LOC100132247 WILD-TYPE    211     71    123     86
D41V7, multiclass
        clus
vv       LOC100132247 MUTATED LOC100132247 WILD-TYPE
  CLUS_1                    2                    211
  CLUS_2                    0                     71
  CLUS_3                    1                    123
  CLUS_4                    0                     86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                        vv
clus                     CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LOC100132247 MUTATED        2      0      0      1      0
  LOC100132247 WILD-TYPE    146     98     59    132     56
D41V8, multiclass
        clus
vv       LOC100132247 MUTATED LOC100132247 WILD-TYPE
  CLUS_1                    2                    146
  CLUS_2                    0                     98
  CLUS_3                    0                     59
  CLUS_4                    1                    132
  CLUS_5                    0                     56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                        vv
clus                     CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LOC100132247 MUTATED        0      1      1      0
  LOC100132247 WILD-TYPE     65     92     77     84
D41V9, multiclass
[1] "Remove cluster labels:" "LOC100132247 MUTATED"  
clus
  LOC100132247 MUTATED LOC100132247 WILD-TYPE 
                     2                    318 
            TCGA-2A-A8VL             TCGA-2A-A8VV             TCGA-2A-A8W3 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-2A-AAYF             TCGA-2A-AAYO             TCGA-2A-AAYU 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-4L-AA1F             TCGA-CH-5737             TCGA-CH-5738 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5739             TCGA-CH-5741             TCGA-CH-5746 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5750             TCGA-CH-5752             TCGA-CH-5762 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5763             TCGA-CH-5764             TCGA-CH-5766 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5769             TCGA-CH-5772             TCGA-CH-5789 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5792             TCGA-CH-5794             TCGA-EJ-5494 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5497             TCGA-EJ-5504             TCGA-EJ-5506 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5512             TCGA-EJ-5514             TCGA-EJ-5516 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5517             TCGA-EJ-5522             TCGA-EJ-5524 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5525             TCGA-EJ-5526             TCGA-EJ-5527 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5542             TCGA-EJ-7115             TCGA-EJ-7123 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7125             TCGA-EJ-7314             TCGA-EJ-7315 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7317             TCGA-EJ-7321             TCGA-EJ-7327 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7328             TCGA-EJ-7330             TCGA-EJ-7331 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7782             TCGA-EJ-7783             TCGA-EJ-7784 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7785             TCGA-EJ-7786             TCGA-EJ-7788 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7791             TCGA-EJ-7792             TCGA-EJ-7793 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7794             TCGA-EJ-7797             TCGA-EJ-8468 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-8469             TCGA-EJ-8470             TCGA-EJ-8472 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-8474             TCGA-EJ-A46B             TCGA-EJ-A46D 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A46E             TCGA-EJ-A46G             TCGA-EJ-A46H 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A46I             TCGA-EJ-A65F             TCGA-EJ-A65J 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A6RA             TCGA-EJ-A6RC             TCGA-EJ-A7NH 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A7NJ             TCGA-EJ-A7NK             TCGA-EJ-A7NM 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A8FN             TCGA-EJ-A8FO             TCGA-EJ-A8FP 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A8FU             TCGA-EJ-AB20             TCGA-EJ-AB27 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-FC-7708             TCGA-FC-7961             TCGA-FC-A8O0 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6329             TCGA-G9-6333             TCGA-G9-6336 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6338             TCGA-G9-6339             TCGA-G9-6342 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6347             TCGA-G9-6351             TCGA-G9-6353 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6354             TCGA-G9-6361             TCGA-G9-6365 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6369             TCGA-G9-6377             TCGA-G9-6379 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6498             TCGA-G9-6499             TCGA-G9-7509 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-7510             TCGA-G9-7519             TCGA-G9-7521 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-7522             TCGA-G9-7523             TCGA-G9-A9S0 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-A9S4             TCGA-G9-A9S7             TCGA-H9-7775 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-H9-A6BX             TCGA-HC-7075             TCGA-HC-7078 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7079             TCGA-HC-7081             TCGA-HC-7209 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7210             TCGA-HC-7212             TCGA-HC-7213 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7230             TCGA-HC-7231             TCGA-HC-7232 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7233             TCGA-HC-7737             TCGA-HC-7740 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7742             TCGA-HC-7744             TCGA-HC-7745 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7747             TCGA-HC-7748             TCGA-HC-7749 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7750             TCGA-HC-7817             TCGA-HC-7818 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7820             TCGA-HC-7821             TCGA-HC-8258 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-8260             TCGA-HC-8261             TCGA-HC-8262 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-8264             TCGA-HC-8265             TCGA-HC-8266 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-A4ZV             TCGA-HC-A631             TCGA-HC-A632 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-A6AL             TCGA-HC-A6AN             TCGA-HC-A6AP 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-A6HX             TCGA-HC-A6HY             TCGA-HC-A76W 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-A8D0             TCGA-HC-A8D1             TCGA-HC-A9TE 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-A9TH             TCGA-HI-7168             TCGA-HI-7169 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HI-7170             TCGA-HI-7171             TCGA-J4-8198 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-8200             TCGA-J4-A67L             TCGA-J4-A67M 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-A67Q             TCGA-J4-A67R             TCGA-J4-A67T 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-A6G1             TCGA-J4-A6G3             TCGA-J4-A83I 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-A83J             TCGA-J4-A83K             TCGA-J4-A83L 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-A83M             TCGA-J4-AATV             TCGA-J4-AAU2 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J9-A52B             TCGA-J9-A52C             TCGA-J9-A52E 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J9-A8CK             TCGA-J9-A8CL             TCGA-J9-A8CM 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KC-A4BO             TCGA-KC-A4BR             TCGA-KC-A4BV 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KC-A7F3             TCGA-KC-A7FA             TCGA-KC-A7FE 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A59V             TCGA-KK-A59Y             TCGA-KK-A59Z 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A5A1             TCGA-KK-A6DY             TCGA-KK-A6E0 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A6E1             TCGA-KK-A6E2             TCGA-KK-A6E4 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A6E5             TCGA-KK-A6E7             TCGA-KK-A7AQ 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A7B0             TCGA-KK-A7B1             TCGA-KK-A7B2 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A7B3             TCGA-KK-A7B4             TCGA-KK-A8I5 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A8I6             TCGA-KK-A8I7             TCGA-KK-A8I8 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A8I9             TCGA-KK-A8IA             TCGA-KK-A8IB 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A8IC             TCGA-KK-A8IG             TCGA-KK-A8IH 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A8IJ             TCGA-KK-A8IL             TCGA-KK-A8IM 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-M7-A720             TCGA-M7-A723             TCGA-M7-A725 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-QU-A6IM             TCGA-QU-A6IO             TCGA-QU-A6IP 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-TK-A8OK             TCGA-TP-A8TT             TCGA-V1-A8MG 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A8MJ             TCGA-V1-A8MK             TCGA-V1-A8MM 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A8WL             TCGA-V1-A8WV             TCGA-V1-A8WW 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A8X3             TCGA-V1-A9O5             TCGA-V1-A9O7 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9O9             TCGA-V1-A9OA             TCGA-V1-A9OH 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9OL             TCGA-V1-A9OQ             TCGA-V1-A9OT 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9OX             TCGA-V1-A9Z7             TCGA-V1-A9Z8 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9Z9             TCGA-V1-A9ZG             TCGA-V1-A9ZI 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9ZK             TCGA-V1-A9ZR             TCGA-VN-A88I 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-VN-A88K             TCGA-VN-A88L             TCGA-VN-A88P 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-VP-A872             TCGA-VP-A878             TCGA-VP-A879 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-VP-A87C             TCGA-VP-A87E             TCGA-VP-A87K 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-VP-AA1N             TCGA-X4-A8KQ             TCGA-X4-A8KS 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-XA-A8JR             TCGA-XJ-A83H             TCGA-XJ-A9DI 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-XJ-A9DK             TCGA-XJ-A9DQ             TCGA-XK-AAIV 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-XK-AAIW             TCGA-XK-AAJ3             TCGA-XK-AAJA 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-XK-AAJT             TCGA-XK-AAJU             TCGA-XK-AAK1 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-XQ-A8TB             TCGA-Y6-A8TL             TCGA-Y6-A9XI 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8HJ             TCGA-YL-A8HK             TCGA-YL-A8HO 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8S8             TCGA-YL-A8SF             TCGA-YL-A8SH 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8SI             TCGA-YL-A8SJ             TCGA-YL-A8SK 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8SO             TCGA-YL-A8SR             TCGA-YL-A9WH 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A9WY             TCGA-ZG-A8QW             TCGA-ZG-A8QX 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A8QY             TCGA-ZG-A8QZ             TCGA-ZG-A9KY 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9L0             TCGA-ZG-A9L1             TCGA-ZG-A9L2 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9L4             TCGA-ZG-A9L5             TCGA-ZG-A9L6 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9L9             TCGA-ZG-A9LB             TCGA-ZG-A9LM 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9LN             TCGA-ZG-A9LS             TCGA-ZG-A9LU 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9LZ             TCGA-ZG-A9M4             TCGA-ZG-A9MC 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9N3             TCGA-ZG-A9ND             TCGA-ZG-A9NI 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
                        vv
clus                     CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LOC100132247 MUTATED        1      1      0      0      0
  LOC100132247 WILD-TYPE     74     87     69     23     65
D41V10, multiclass
[1] "Remove cluster labels:" "LOC100132247 MUTATED"  
clus
  LOC100132247 MUTATED LOC100132247 WILD-TYPE 
                     2                    318 
            TCGA-2A-A8VL             TCGA-2A-A8VV             TCGA-2A-A8W3 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-2A-AAYF             TCGA-2A-AAYO             TCGA-2A-AAYU 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-4L-AA1F             TCGA-CH-5737             TCGA-CH-5738 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5739             TCGA-CH-5741             TCGA-CH-5746 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5750             TCGA-CH-5752             TCGA-CH-5762 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5763             TCGA-CH-5764             TCGA-CH-5766 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5769             TCGA-CH-5772             TCGA-CH-5789 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-CH-5792             TCGA-CH-5794             TCGA-EJ-5494 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5497             TCGA-EJ-5504             TCGA-EJ-5506 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5512             TCGA-EJ-5514             TCGA-EJ-5516 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5517             TCGA-EJ-5522             TCGA-EJ-5524 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5525             TCGA-EJ-5526             TCGA-EJ-5527 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-5542             TCGA-EJ-7115             TCGA-EJ-7123 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7125             TCGA-EJ-7314             TCGA-EJ-7315 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7317             TCGA-EJ-7321             TCGA-EJ-7327 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7328             TCGA-EJ-7330             TCGA-EJ-7331 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7782             TCGA-EJ-7783             TCGA-EJ-7784 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7785             TCGA-EJ-7786             TCGA-EJ-7788 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7791             TCGA-EJ-7792             TCGA-EJ-7793 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-7794             TCGA-EJ-7797             TCGA-EJ-8468 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-8469             TCGA-EJ-8470             TCGA-EJ-8472 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-8474             TCGA-EJ-A46B             TCGA-EJ-A46D 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A46E             TCGA-EJ-A46G             TCGA-EJ-A46H 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A46I             TCGA-EJ-A65F             TCGA-EJ-A65J 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A6RA             TCGA-EJ-A6RC             TCGA-EJ-A7NH 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A7NJ             TCGA-EJ-A7NK             TCGA-EJ-A7NM 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A8FN             TCGA-EJ-A8FO             TCGA-EJ-A8FP 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-EJ-A8FU             TCGA-EJ-AB20             TCGA-EJ-AB27 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-FC-7708             TCGA-FC-7961             TCGA-FC-A8O0 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6329             TCGA-G9-6333             TCGA-G9-6336 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6338             TCGA-G9-6339             TCGA-G9-6342 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6347             TCGA-G9-6351             TCGA-G9-6353 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6354             TCGA-G9-6361             TCGA-G9-6365 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6369             TCGA-G9-6377             TCGA-G9-6379 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-6498             TCGA-G9-6499             TCGA-G9-7509 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-7510             TCGA-G9-7519             TCGA-G9-7521 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-7522             TCGA-G9-7523             TCGA-G9-A9S0 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-G9-A9S4             TCGA-G9-A9S7             TCGA-H9-7775 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-H9-A6BX             TCGA-HC-7075             TCGA-HC-7078 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7079             TCGA-HC-7081             TCGA-HC-7209 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7210             TCGA-HC-7212             TCGA-HC-7213 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7230             TCGA-HC-7231             TCGA-HC-7232 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7233             TCGA-HC-7737             TCGA-HC-7740 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7742             TCGA-HC-7744             TCGA-HC-7745 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7747             TCGA-HC-7748             TCGA-HC-7749 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7750             TCGA-HC-7817             TCGA-HC-7818 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-7820             TCGA-HC-7821             TCGA-HC-8258 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-8260             TCGA-HC-8261             TCGA-HC-8262 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-8264             TCGA-HC-8265             TCGA-HC-8266 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-A4ZV             TCGA-HC-A631             TCGA-HC-A632 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-A6AL             TCGA-HC-A6AN             TCGA-HC-A6AP 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-A6HX             TCGA-HC-A6HY             TCGA-HC-A76W 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-A8D0             TCGA-HC-A8D1             TCGA-HC-A9TE 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HC-A9TH             TCGA-HI-7168             TCGA-HI-7169 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-HI-7170             TCGA-HI-7171             TCGA-J4-8198 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-8200             TCGA-J4-A67L             TCGA-J4-A67M 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-A67Q             TCGA-J4-A67R             TCGA-J4-A67T 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-A6G1             TCGA-J4-A6G3             TCGA-J4-A83I 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-A83J             TCGA-J4-A83K             TCGA-J4-A83L 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J4-A83M             TCGA-J4-AATV             TCGA-J4-AAU2 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J9-A52B             TCGA-J9-A52C             TCGA-J9-A52E 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-J9-A8CK             TCGA-J9-A8CL             TCGA-J9-A8CM 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KC-A4BO             TCGA-KC-A4BR             TCGA-KC-A4BV 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KC-A7F3             TCGA-KC-A7FA             TCGA-KC-A7FE 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A59V             TCGA-KK-A59Y             TCGA-KK-A59Z 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A5A1             TCGA-KK-A6DY             TCGA-KK-A6E0 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A6E1             TCGA-KK-A6E2             TCGA-KK-A6E4 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A6E5             TCGA-KK-A6E7             TCGA-KK-A7AQ 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A7B0             TCGA-KK-A7B1             TCGA-KK-A7B2 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A7B3             TCGA-KK-A7B4             TCGA-KK-A8I5 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A8I6             TCGA-KK-A8I7             TCGA-KK-A8I8 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A8I9             TCGA-KK-A8IA             TCGA-KK-A8IB 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A8IC             TCGA-KK-A8IG             TCGA-KK-A8IH 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-KK-A8IJ             TCGA-KK-A8IL             TCGA-KK-A8IM 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-M7-A720             TCGA-M7-A723             TCGA-M7-A725 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-QU-A6IM             TCGA-QU-A6IO             TCGA-QU-A6IP 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-TK-A8OK             TCGA-TP-A8TT             TCGA-V1-A8MG 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A8MJ             TCGA-V1-A8MK             TCGA-V1-A8MM 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A8WL             TCGA-V1-A8WV             TCGA-V1-A8WW 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A8X3             TCGA-V1-A9O5             TCGA-V1-A9O7 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9O9             TCGA-V1-A9OA             TCGA-V1-A9OH 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9OL             TCGA-V1-A9OQ             TCGA-V1-A9OT 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9OX             TCGA-V1-A9Z7             TCGA-V1-A9Z8 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9Z9             TCGA-V1-A9ZG             TCGA-V1-A9ZI 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-V1-A9ZK             TCGA-V1-A9ZR             TCGA-VN-A88I 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-VN-A88K             TCGA-VN-A88L             TCGA-VN-A88P 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-VP-A872             TCGA-VP-A878             TCGA-VP-A879 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-VP-A87C             TCGA-VP-A87E             TCGA-VP-A87K 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-VP-AA1N             TCGA-X4-A8KQ             TCGA-X4-A8KS 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-XA-A8JR             TCGA-XJ-A83H             TCGA-XJ-A9DI 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-XJ-A9DK             TCGA-XJ-A9DQ             TCGA-XK-AAIV 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-XK-AAIW             TCGA-XK-AAJ3             TCGA-XK-AAJA 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-XK-AAJT             TCGA-XK-AAJU             TCGA-XK-AAK1 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-XQ-A8TB             TCGA-Y6-A8TL             TCGA-Y6-A9XI 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8HJ             TCGA-YL-A8HK             TCGA-YL-A8HO 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8S8             TCGA-YL-A8SF             TCGA-YL-A8SH 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8SI             TCGA-YL-A8SJ             TCGA-YL-A8SK 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A8SO             TCGA-YL-A8SR             TCGA-YL-A9WH 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-YL-A9WY             TCGA-ZG-A8QW             TCGA-ZG-A8QX 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A8QY             TCGA-ZG-A8QZ             TCGA-ZG-A9KY 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9L0             TCGA-ZG-A9L1             TCGA-ZG-A9L2 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9L4             TCGA-ZG-A9L5             TCGA-ZG-A9L6 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9L9             TCGA-ZG-A9LB             TCGA-ZG-A9LM 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9LN             TCGA-ZG-A9LS             TCGA-ZG-A9LU 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9LZ             TCGA-ZG-A9M4             TCGA-ZG-A9MC 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 
            TCGA-ZG-A9N3             TCGA-ZG-A9ND             TCGA-ZG-A9NI 
"LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" "LOC100132247 WILD-TYPE" 

Clustering(42) Variable = EMG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        2      0      0      2
  EMG1 WILD-TYPE    106     91     98    193
D42V1, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2            106
  CLUS_2            0             91
  CLUS_3            0             98
  CLUS_4            2            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        0      1      3      0
  EMG1 WILD-TYPE    161    139    123     71
D42V2, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            0            161
  CLUS_2            1            139
  CLUS_3            3            123
  CLUS_4            0             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EMG1 MUTATED        0      0      0      0      0      0
  EMG1 WILD-TYPE    106     51     45     53     58     39
D42V3, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        0      0      0      0
  EMG1 WILD-TYPE     75    114     93     70
D42V4, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        0      1      3      0
  EMG1 WILD-TYPE     96    141    148    108
D42V5, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            0             96
  CLUS_2            1            141
  CLUS_3            3            148
  CLUS_4            0            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        0      2      2
  EMG1 WILD-TYPE    173    206    114
D42V6, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            0            173
  CLUS_2            2            206
  CLUS_3            2            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        1      0      0      3
  EMG1 WILD-TYPE    212     71    124     83
D42V7, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            1            212
  CLUS_2            0             71
  CLUS_3            0            124
  CLUS_4            3             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        0      0      1      0      3
  EMG1 WILD-TYPE    148     98     58    133     53
D42V8, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            0            148
  CLUS_2            0             98
  CLUS_3            1             58
  CLUS_4            0            133
  CLUS_5            3             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        0      1      0      1
  EMG1 WILD-TYPE     65     92     78     83
D42V9, multiclass
[1] "Remove cluster labels:" "EMG1 MUTATED"          
clus
  EMG1 MUTATED EMG1 WILD-TYPE 
             2            318 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-2A-AAYF 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2A-AAYO     TCGA-2A-AAYU     TCGA-4L-AA1F     TCGA-CH-5737 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A46B     TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46G 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FO 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A8FP     TCGA-EJ-A8FU     TCGA-EJ-AB20     TCGA-EJ-AB27 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A8O0     TCGA-G9-6329 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6339 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-6342     TCGA-G9-6347     TCGA-G9-6351     TCGA-G9-6353 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6361     TCGA-G9-6365     TCGA-G9-6369 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-6377     TCGA-G9-6379     TCGA-G9-6498     TCGA-G9-6499 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-7509     TCGA-G9-7510     TCGA-G9-7519     TCGA-G9-7521 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-A9S0     TCGA-G9-A9S4 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-A9S7     TCGA-H9-7775     TCGA-H9-A6BX     TCGA-HC-7075 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7209     TCGA-HC-7210 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7232     TCGA-HC-7233     TCGA-HC-7737     TCGA-HC-7740 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7745     TCGA-HC-7747 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7817 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7818     TCGA-HC-7820     TCGA-HC-7821     TCGA-HC-8258 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-8260     TCGA-HC-8261     TCGA-HC-8262     TCGA-HC-8264 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-8265     TCGA-HC-8266     TCGA-HC-A4ZV     TCGA-HC-A631 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AN     TCGA-HC-A6AP 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-A6HX     TCGA-HC-A6HY     TCGA-HC-A76W     TCGA-HC-A8D0 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-A8D1     TCGA-HC-A9TE     TCGA-HC-A9TH     TCGA-HI-7168 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171     TCGA-J4-8198 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J4-8200     TCGA-J4-A67L     TCGA-J4-A67M     TCGA-J4-A67Q 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6G1     TCGA-J4-A6G3 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J4-A83I     TCGA-J4-A83J     TCGA-J4-A83K     TCGA-J4-A83L 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J4-A83M     TCGA-J4-AATV     TCGA-J4-AAU2     TCGA-J9-A52B 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J9-A52C     TCGA-J9-A52E     TCGA-J9-A8CK     TCGA-J9-A8CL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-KC-A4BL     TCGA-KC-A4BO     TCGA-KC-A4BR 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KC-A4BV     TCGA-KC-A7F3     TCGA-KC-A7FA     TCGA-KC-A7FE 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A59V     TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A5A1 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A6DY     TCGA-KK-A6E0     TCGA-KK-A6E1     TCGA-KK-A6E2 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A6E4     TCGA-KK-A6E5     TCGA-KK-A6E7     TCGA-KK-A7AQ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A7B0     TCGA-KK-A7B1     TCGA-KK-A7B2     TCGA-KK-A7B3 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A7B4     TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I7 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A8I8     TCGA-KK-A8I9     TCGA-KK-A8IA     TCGA-KK-A8IB 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A8IC     TCGA-KK-A8IG     TCGA-KK-A8IH     TCGA-KK-A8IJ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A8IL     TCGA-KK-A8IM     TCGA-M7-A720     TCGA-M7-A723 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-M7-A725     TCGA-MG-AAMC     TCGA-QU-A6IM     TCGA-QU-A6IO 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-QU-A6IP     TCGA-TK-A8OK     TCGA-TP-A8TT     TCGA-V1-A8MG 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-V1-A8MJ     TCGA-V1-A8MK     TCGA-V1-A8MM     TCGA-V1-A8WL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-V1-A8WV     TCGA-V1-A8WW     TCGA-V1-A8X3     TCGA-V1-A9O5 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-V1-A9O7     TCGA-V1-A9O9     TCGA-V1-A9OA     TCGA-V1-A9OH 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-V1-A9OL     TCGA-V1-A9OQ     TCGA-V1-A9OT     TCGA-V1-A9OX 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-V1-A9Z7     TCGA-V1-A9Z8     TCGA-V1-A9Z9     TCGA-V1-A9ZG 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-V1-A9ZI     TCGA-V1-A9ZK     TCGA-V1-A9ZR     TCGA-VN-A88I 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-VN-A88K     TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A878 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-VP-AA1N     TCGA-X4-A8KQ     TCGA-X4-A8KS     TCGA-XA-A8JR 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-XJ-A83H     TCGA-XJ-A9DI     TCGA-XJ-A9DK     TCGA-XJ-A9DQ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-XK-AAIV     TCGA-XK-AAIW     TCGA-XK-AAJ3     TCGA-XK-AAJA 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-XK-AAJT     TCGA-XK-AAJU     TCGA-XK-AAK1     TCGA-XQ-A8TB 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-Y6-A8TL     TCGA-Y6-A9XI     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-YL-A8SI     TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SO 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-YL-A8SR     TCGA-YL-A9WH     TCGA-YL-A9WY     TCGA-ZG-A8QW 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ     TCGA-ZG-A9KY 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-ZG-A9L0     TCGA-ZG-A9L1     TCGA-ZG-A9L2     TCGA-ZG-A9L4 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-ZG-A9L5     TCGA-ZG-A9L6     TCGA-ZG-A9L9     TCGA-ZG-A9LB 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-ZG-A9LM     TCGA-ZG-A9LN     TCGA-ZG-A9LS     TCGA-ZG-A9LU 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-ZG-A9LZ     TCGA-ZG-A9M4     TCGA-ZG-A9MC     TCGA-ZG-A9N3 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-ZG-A9ND     TCGA-ZG-A9NI 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        0      1      0      0      1
  EMG1 WILD-TYPE     75     87     69     23     64
D42V10, multiclass
[1] "Remove cluster labels:" "EMG1 MUTATED"          
clus
  EMG1 MUTATED EMG1 WILD-TYPE 
             2            318 
    TCGA-2A-A8VL     TCGA-2A-A8VV     TCGA-2A-A8W3     TCGA-2A-AAYF 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-2A-AAYO     TCGA-2A-AAYU     TCGA-4L-AA1F     TCGA-CH-5737 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5741     TCGA-CH-5746 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CH-5750     TCGA-CH-5752     TCGA-CH-5762     TCGA-CH-5763 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CH-5764     TCGA-CH-5766     TCGA-CH-5769     TCGA-CH-5772 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-CH-5789     TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-5497     TCGA-EJ-5504     TCGA-EJ-5506     TCGA-EJ-5512 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5522 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123     TCGA-EJ-7125 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317     TCGA-EJ-7321 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330     TCGA-EJ-7331 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7782     TCGA-EJ-7783     TCGA-EJ-7784     TCGA-EJ-7785 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7786     TCGA-EJ-7788     TCGA-EJ-7791     TCGA-EJ-7792 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-7793     TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-8469     TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A46B     TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46G 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-EJ-A65F     TCGA-EJ-A65J 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A6RA     TCGA-EJ-A6RC     TCGA-EJ-A7NH     TCGA-EJ-A7NJ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A7NK     TCGA-EJ-A7NM     TCGA-EJ-A8FN     TCGA-EJ-A8FO 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-EJ-A8FP     TCGA-EJ-A8FU     TCGA-EJ-AB20     TCGA-EJ-AB27 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A8O0     TCGA-G9-6329 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6339 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-6342     TCGA-G9-6347     TCGA-G9-6351     TCGA-G9-6353 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6361     TCGA-G9-6365     TCGA-G9-6369 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-6377     TCGA-G9-6379     TCGA-G9-6498     TCGA-G9-6499 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-7509     TCGA-G9-7510     TCGA-G9-7519     TCGA-G9-7521 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-A9S0     TCGA-G9-A9S4 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-G9-A9S7     TCGA-H9-7775     TCGA-H9-A6BX     TCGA-HC-7075 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7081     TCGA-HC-7209     TCGA-HC-7210 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7232     TCGA-HC-7233     TCGA-HC-7737     TCGA-HC-7740 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7745     TCGA-HC-7747 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7817 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-7818     TCGA-HC-7820     TCGA-HC-7821     TCGA-HC-8258 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-8260     TCGA-HC-8261     TCGA-HC-8262     TCGA-HC-8264 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-8265     TCGA-HC-8266     TCGA-HC-A4ZV     TCGA-HC-A631 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AN     TCGA-HC-A6AP 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-A6HX     TCGA-HC-A6HY     TCGA-HC-A76W     TCGA-HC-A8D0 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HC-A8D1     TCGA-HC-A9TE     TCGA-HC-A9TH     TCGA-HI-7168 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171     TCGA-J4-8198 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J4-8200     TCGA-J4-A67L     TCGA-J4-A67M     TCGA-J4-A67Q 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J4-A67R     TCGA-J4-A67T     TCGA-J4-A6G1     TCGA-J4-A6G3 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J4-A83I     TCGA-J4-A83J     TCGA-J4-A83K     TCGA-J4-A83L 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J4-A83M     TCGA-J4-AATV     TCGA-J4-AAU2     TCGA-J9-A52B 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J9-A52C     TCGA-J9-A52E     TCGA-J9-A8CK     TCGA-J9-A8CL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-J9-A8CM     TCGA-KC-A4BL     TCGA-KC-A4BO     TCGA-KC-A4BR 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KC-A4BV     TCGA-KC-A7F3     TCGA-KC-A7FA     TCGA-KC-A7FE 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A59V     TCGA-KK-A59Y     TCGA-KK-A59Z     TCGA-KK-A5A1 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A6DY     TCGA-KK-A6E0     TCGA-KK-A6E1     TCGA-KK-A6E2 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A6E4     TCGA-KK-A6E5     TCGA-KK-A6E7     TCGA-KK-A7AQ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A7B0     TCGA-KK-A7B1     TCGA-KK-A7B2     TCGA-KK-A7B3 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A7B4     TCGA-KK-A8I5     TCGA-KK-A8I6     TCGA-KK-A8I7 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A8I8     TCGA-KK-A8I9     TCGA-KK-A8IA     TCGA-KK-A8IB 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A8IC     TCGA-KK-A8IG     TCGA-KK-A8IH     TCGA-KK-A8IJ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-KK-A8IL     TCGA-KK-A8IM     TCGA-M7-A720     TCGA-M7-A723 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-M7-A725     TCGA-MG-AAMC     TCGA-QU-A6IM     TCGA-QU-A6IO 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-QU-A6IP     TCGA-TK-A8OK     TCGA-TP-A8TT     TCGA-V1-A8MG 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-V1-A8MJ     TCGA-V1-A8MK     TCGA-V1-A8MM     TCGA-V1-A8WL 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-V1-A8WV     TCGA-V1-A8WW     TCGA-V1-A8X3     TCGA-V1-A9O5 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-V1-A9O7     TCGA-V1-A9O9     TCGA-V1-A9OA     TCGA-V1-A9OH 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-V1-A9OL     TCGA-V1-A9OQ     TCGA-V1-A9OT     TCGA-V1-A9OX 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-V1-A9Z7     TCGA-V1-A9Z8     TCGA-V1-A9Z9     TCGA-V1-A9ZG 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-V1-A9ZI     TCGA-V1-A9ZK     TCGA-V1-A9ZR     TCGA-VN-A88I 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-VN-A88K     TCGA-VN-A88L     TCGA-VN-A88P     TCGA-VP-A878 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-VP-A879     TCGA-VP-A87C     TCGA-VP-A87E     TCGA-VP-A87K 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-VP-AA1N     TCGA-X4-A8KQ     TCGA-X4-A8KS     TCGA-XA-A8JR 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-XJ-A83H     TCGA-XJ-A9DI     TCGA-XJ-A9DK     TCGA-XJ-A9DQ 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-XK-AAIV     TCGA-XK-AAIW     TCGA-XK-AAJ3     TCGA-XK-AAJA 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-XK-AAJT     TCGA-XK-AAJU     TCGA-XK-AAK1     TCGA-XQ-A8TB 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-Y6-A8TL     TCGA-Y6-A9XI     TCGA-YL-A8HJ     TCGA-YL-A8HK 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-YL-A8HO     TCGA-YL-A8S8     TCGA-YL-A8SF     TCGA-YL-A8SH 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-YL-A8SI     TCGA-YL-A8SJ     TCGA-YL-A8SK     TCGA-YL-A8SO 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-YL-A8SR     TCGA-YL-A9WH     TCGA-YL-A9WY     TCGA-ZG-A8QW 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-ZG-A8QX     TCGA-ZG-A8QY     TCGA-ZG-A8QZ     TCGA-ZG-A9KY 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-ZG-A9L0     TCGA-ZG-A9L1     TCGA-ZG-A9L2     TCGA-ZG-A9L4 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-ZG-A9L5     TCGA-ZG-A9L6     TCGA-ZG-A9L9     TCGA-ZG-A9LB 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-ZG-A9LM     TCGA-ZG-A9LN     TCGA-ZG-A9LS     TCGA-ZG-A9LU 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-ZG-A9LZ     TCGA-ZG-A9M4     TCGA-ZG-A9MC     TCGA-ZG-A9N3 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 
    TCGA-ZG-A9ND     TCGA-ZG-A9NI 
"EMG1 WILD-TYPE" "EMG1 WILD-TYPE" 

Clustering(43) Variable = CDH16 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH16 MUTATED        2      1      0      1
  CDH16 WILD-TYPE    106     90     98    194
D43V1, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             2             106
  CLUS_2             1              90
  CLUS_3             0              98
  CLUS_4             1             194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH16 MUTATED        1      0      2      1
  CDH16 WILD-TYPE    160    140    124     70
D43V2, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             1             160
  CLUS_2             0             140
  CLUS_3             2             124
  CLUS_4             1              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDH16 MUTATED        1      0      0      1      1      1
  CDH16 WILD-TYPE    105     51     45     52     57     38
D43V3, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              51
  CLUS_3             0              45
  CLUS_4             1              52
  CLUS_5             1              57
  CLUS_6             1              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH16 MUTATED        0      0      2      2
  CDH16 WILD-TYPE     75    114     91     68
D43V4, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             0              75
  CLUS_2             0             114
  CLUS_3             2              91
  CLUS_4             2              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH16 MUTATED        0      3      0      1
  CDH16 WILD-TYPE     96    139    151    107
D43V5, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             0              96
  CLUS_2             3             139
  CLUS_3             0             151
  CLUS_4             1             107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH16 MUTATED        1      1      2
  CDH16 WILD-TYPE    172    207    114
D43V6, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             1             172
  CLUS_2             1             207
  CLUS_3             2             114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH16 MUTATED        1      0      3      0
  CDH16 WILD-TYPE    212     71    121     86
D43V7, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             1             212
  CLUS_2             0              71
  CLUS_3             3             121
  CLUS_4             0              86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH16 MUTATED        3      0      1      0      0
  CDH16 WILD-TYPE    145     98     58    133     56
D43V8, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             3             145
  CLUS_2             0              98
  CLUS_3             1              58
  CLUS_4             0             133
  CLUS_5             0              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH16 MUTATED        1      2      0      0
  CDH16 WILD-TYPE     64     91     78     84
D43V9, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             1              64
  CLUS_2             2              91
  CLUS_3             0              78
  CLUS_4             0              84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH16 MUTATED        2      1      0      0      0
  CDH16 WILD-TYPE     73     87     69     23     65
D43V10, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             2              73
  CLUS_2             1              87
  CLUS_3             0              69
  CLUS_4             0              23
  CLUS_5             0              65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = KRT25 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT25 MUTATED        0      1      2      3
  KRT25 WILD-TYPE    108     90     96    192
D44V1, multiclass
        clus
vv       KRT25 MUTATED KRT25 WILD-TYPE
  CLUS_1             0             108
  CLUS_2             1              90
  CLUS_3             2              96
  CLUS_4             3             192
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT25 MUTATED        1      0      4      1
  KRT25 WILD-TYPE    160    140    122     70
D44V2, multiclass
        clus
vv       KRT25 MUTATED KRT25 WILD-TYPE
  CLUS_1             1             160
  CLUS_2             0             140
  CLUS_3             4             122
  CLUS_4             1              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRT25 MUTATED        1      0      1      1      1      1
  KRT25 WILD-TYPE    105     51     44     52     57     38
D44V3, multiclass
        clus
vv       KRT25 MUTATED KRT25 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              51
  CLUS_3             1              44
  CLUS_4             1              52
  CLUS_5             1              57
  CLUS_6             1              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT25 MUTATED        0      2      1      2
  KRT25 WILD-TYPE     75    112     92     68
D44V4, multiclass
        clus
vv       KRT25 MUTATED KRT25 WILD-TYPE
  CLUS_1             0              75
  CLUS_2             2             112
  CLUS_3             1              92
  CLUS_4             2              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT25 MUTATED        0      4      2      0
  KRT25 WILD-TYPE     96    138    149    108
D44V5, multiclass
        clus
vv       KRT25 MUTATED KRT25 WILD-TYPE
  CLUS_1             0              96
  CLUS_2             4             138
  CLUS_3             2             149
  CLUS_4             0             108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT25 MUTATED        2      2      2
  KRT25 WILD-TYPE    171    206    114
D44V6, multiclass
        clus
vv       KRT25 MUTATED KRT25 WILD-TYPE
  CLUS_1             2             171
  CLUS_2             2             206
  CLUS_3             2             114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT25 MUTATED        4      0      0      2
  KRT25 WILD-TYPE    209     71    124     84
D44V7, multiclass
        clus
vv       KRT25 MUTATED KRT25 WILD-TYPE
  CLUS_1             4             209
  CLUS_2             0              71
  CLUS_3             0             124
  CLUS_4             2              84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT25 MUTATED        0      0      4      2      0
  KRT25 WILD-TYPE    148     98     55    131     56
D44V8, multiclass
        clus
vv       KRT25 MUTATED KRT25 WILD-TYPE
  CLUS_1             0             148
  CLUS_2             0              98
  CLUS_3             4              55
  CLUS_4             2             131
  CLUS_5             0              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT25 MUTATED        1      2      0      2
  KRT25 WILD-TYPE     64     91     78     82
D44V9, multiclass
        clus
vv       KRT25 MUTATED KRT25 WILD-TYPE
  CLUS_1             1              64
  CLUS_2             2              91
  CLUS_3             0              78
  CLUS_4             2              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT25 MUTATED        0      3      0      1      1
  KRT25 WILD-TYPE     75     85     69     22     64
D44V10, multiclass
        clus
vv       KRT25 MUTATED KRT25 WILD-TYPE
  CLUS_1             0              75
  CLUS_2             3              85
  CLUS_3             0              69
  CLUS_4             1              22
  CLUS_5             1              64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
