[1] "ofn"        "-oTREAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/READ-TP/22541962/READ-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/READ-TP/22532761/transformed.cor.cli.txt"

nPatients in clinical file=169, in cluster file=165, common to both=165
[1]  58 165
[1] "AMP PEAK  1(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           48                           117 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           48                           117 
[1] "AMP PEAK  2(1Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                           49                           116 
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                           49                           116 
[1] "AMP PEAK  3(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE 
                           54                           111 
  AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE 
                           54                           111 
[1] "AMP PEAK  4(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE 
                            53                            112 
  AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE 
                            53                            112 
[1] "AMP PEAK  5(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE 
                            70                             95 
  AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE 
                            70                             95 
[1] "AMP PEAK  6(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE 
                           109                             56 
  AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE 
                           109                             56 
[1] "AMP PEAK  7(10Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(10Q22.2) MUTATED AMP PEAK  7(10Q22.2) WILD-TYPE 
                            11                            154 
  AMP PEAK  7(10Q22.2) MUTATED AMP PEAK  7(10Q22.2) WILD-TYPE 
                            11                            154 
[1] "AMP PEAK  8(11P15.5) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(11P15.5) MUTATED AMP PEAK  8(11P15.5) WILD-TYPE 
                            45                            120 
  AMP PEAK  8(11P15.5) MUTATED AMP PEAK  8(11P15.5) WILD-TYPE 
                            45                            120 
[1] "AMP PEAK  9(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(11Q13.3) MUTATED AMP PEAK  9(11Q13.3) WILD-TYPE 
                            28                            137 
  AMP PEAK  9(11Q13.3) MUTATED AMP PEAK  9(11Q13.3) WILD-TYPE 
                            28                            137 
[1] "AMP PEAK 10(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE 
                             41                             124 
  AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE 
                             41                             124 
[1] "AMP PEAK 11(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                            40                            125 
  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                            40                            125 
[1] "AMP PEAK 12(13Q12.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE 
                            126                              39 
  AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE 
                            126                              39 
[1] "AMP PEAK 13(13Q12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE 
                           125                             40 
  AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE 
                           125                             40 
[1] "AMP PEAK 14(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                           120                             45 
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                           120                             45 
[1] "AMP PEAK 15(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(16P11.2) MUTATED AMP PEAK 15(16P11.2) WILD-TYPE 
                            47                            118 
  AMP PEAK 15(16P11.2) MUTATED AMP PEAK 15(16P11.2) WILD-TYPE 
                            47                            118 
[1] "AMP PEAK 16(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE 
                          46                          119 
  AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE 
                          46                          119 
[1] "AMP PEAK 17(17Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE 
                            39                            126 
  AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE 
                            39                            126 
[1] "AMP PEAK 18(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(20Q11.21) MUTATED AMP PEAK 18(20Q11.21) WILD-TYPE 
                            146                              19 
  AMP PEAK 18(20Q11.21) MUTATED AMP PEAK 18(20Q11.21) WILD-TYPE 
                            146                              19 
[1] "AMP PEAK 19(20Q11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(20Q11.23) MUTATED AMP PEAK 19(20Q11.23) WILD-TYPE 
                            147                              18 
  AMP PEAK 19(20Q11.23) MUTATED AMP PEAK 19(20Q11.23) WILD-TYPE 
                            147                              18 
[1] "AMP PEAK 20(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(20Q13.33) MUTATED AMP PEAK 20(20Q13.33) WILD-TYPE 
                            146                              19 
  AMP PEAK 20(20Q13.33) MUTATED AMP PEAK 20(20Q13.33) WILD-TYPE 
                            146                              19 
[1] "AMP PEAK 21(XP22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(XP22.2) MUTATED AMP PEAK 21(XP22.2) WILD-TYPE 
                           32                           133 
  AMP PEAK 21(XP22.2) MUTATED AMP PEAK 21(XP22.2) WILD-TYPE 
                           32                           133 
[1] "AMP PEAK 22(XQ27.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(XQ27.3) MUTATED AMP PEAK 22(XQ27.3) WILD-TYPE 
                           37                           128 
  AMP PEAK 22(XQ27.3) MUTATED AMP PEAK 22(XQ27.3) WILD-TYPE 
                           37                           128 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            75                             90 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            75                             90 
[1] "DEL PEAK  2(1P33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                         53                         112 
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                         53                         112 
[1] "DEL PEAK  3(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                           54                           111 
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                           54                           111 
[1] "DEL PEAK  4(2P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         13                         152 
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         13                         152 
[1] "DEL PEAK  5(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                           31                           134 
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                           31                           134 
[1] "DEL PEAK  6(3Q26.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE 
                            18                            147 
  DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE 
                            18                            147 
[1] "DEL PEAK  7(4P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE 
                         60                         105 
  DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE 
                         60                         105 
[1] "DEL PEAK  8(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                           73                            92 
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                           73                            92 
[1] "DEL PEAK  9(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           72                            93 
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           72                            93 
[1] "DEL PEAK 10(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE 
                           53                           112 
  DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE 
                           53                           112 
[1] "DEL PEAK 11(5Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE 
                           59                           106 
  DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE 
                           59                           106 
[1] "DEL PEAK 12(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           24                           141 
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           24                           141 
[1] "DEL PEAK 13(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         30                         135 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         30                         135 
[1] "DEL PEAK 14(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            4                           161 
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            4                           161 
[1] "DEL PEAK 15(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                          100                            65 
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                          100                            65 
[1] "DEL PEAK 16(8Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(8Q11.1) MUTATED DEL PEAK 16(8Q11.1) WILD-TYPE 
                           17                           148 
  DEL PEAK 16(8Q11.1) MUTATED DEL PEAK 16(8Q11.1) WILD-TYPE 
                           17                           148 
[1] "DEL PEAK 17(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                            41                            124 
  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                            41                            124 
[1] "DEL PEAK 18(10Q25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE 
                            48                            117 
  DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE 
                            48                            117 
[1] "DEL PEAK 19(11Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                            38                            127 
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                            38                            127 
[1] "DEL PEAK 20(12Q13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(12Q13.2) MUTATED DEL PEAK 20(12Q13.2) WILD-TYPE 
                            20                            145 
  DEL PEAK 20(12Q13.2) MUTATED DEL PEAK 20(12Q13.2) WILD-TYPE 
                            20                            145 
[1] "DEL PEAK 21(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(14Q11.2) MUTATED DEL PEAK 21(14Q11.2) WILD-TYPE 
                            70                             95 
  DEL PEAK 21(14Q11.2) MUTATED DEL PEAK 21(14Q11.2) WILD-TYPE 
                            70                             95 
[1] "DEL PEAK 22(14Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE 
                            72                             93 
  DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE 
                            72                             93 
[1] "DEL PEAK 23(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE 
                            79                             86 
  DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE 
                            79                             86 
[1] "DEL PEAK 24(15Q22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE 
                             77                              88 
  DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE 
                             77                              88 
[1] "DEL PEAK 25(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                            14                            151 
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                            14                            151 
[1] "DEL PEAK 26(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                            23                            142 
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                            23                            142 
[1] "DEL PEAK 27(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE 
                           113                             52 
  DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE 
                           113                             52 
[1] "DEL PEAK 28(18P11.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(18P11.31) MUTATED DEL PEAK 28(18P11.31) WILD-TYPE 
                            125                              40 
  DEL PEAK 28(18P11.31) MUTATED DEL PEAK 28(18P11.31) WILD-TYPE 
                            125                              40 
[1] "DEL PEAK 29(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE 
                           145                             20 
  DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE 
                           145                             20 
[1] "DEL PEAK 30(18Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE 
                           141                             24 
  DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE 
                           141                             24 
[1] "DEL PEAK 31(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE 
                         141                           24 
  DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE 
                         141                           24 
[1] "DEL PEAK 32(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                            36                            129 
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                            36                            129 
[1] "DEL PEAK 33(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE 
                            49                            116 
  DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE 
                            49                            116 
[1] "DEL PEAK 34(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE 
                            73                             92 
  DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE 
                            73                             92 
[1] "DEL PEAK 35(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE 
                             68                              97 
  DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE 
                             68                              97 
[1] "DEL PEAK 36(XP22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(XP22.33) MUTATED DEL PEAK 36(XP22.33) WILD-TYPE 
                            34                            131 
  DEL PEAK 36(XP22.33) MUTATED DEL PEAK 36(XP22.33) WILD-TYPE 
                            34                            131 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 165 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 165 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=9, binary=FALSE, numeric=FALSE
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED        0      4      7      3      3
  AMP PEAK  1(1Q21.3) WILD-TYPE     13      4     13     10     12
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           4                             4
  CLUS_3                           7                            13
  CLUS_4                           3                            10
  CLUS_5                           3                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.3) MUTATED        1      0      3      3      3      3
  AMP PEAK  1(1Q21.3) WILD-TYPE      5     10      4      6      6      5
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  1(1Q21.3) MUTATED        1      3      0
  AMP PEAK  1(1Q21.3) WILD-TYPE      8      5      3
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           0                            10
  CLUS_3                           3                             4
  CLUS_4                           3                             6
  CLUS_5                           3                             6
  CLUS_6                           3                             5
  CLUS_7                           1                             8
  CLUS_8                           3                             5
  CLUS_9                           0                             3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED       11      8     12     14      3
  AMP PEAK  1(1Q21.3) WILD-TYPE     15     32     15     28     27
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          11                            15
  CLUS_2                           8                            32
  CLUS_3                          12                            15
  CLUS_4                          14                            28
  CLUS_5                           3                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED        4      8      2      9      9
  AMP PEAK  1(1Q21.3) WILD-TYPE     10     15     15     16      8
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           8                            15
  CLUS_3                           2                            15
  CLUS_4                           9                            16
  CLUS_5                           9                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED       15      8      3     11      1
  AMP PEAK  1(1Q21.3) WILD-TYPE     27     19     22     19      2
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          15                            27
  CLUS_2                           8                            19
  CLUS_3                           3                            22
  CLUS_4                          11                            19
  CLUS_5                           1                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.3) MUTATED        3      4      8      6     12      5
  AMP PEAK  1(1Q21.3) WILD-TYPE     17     16     16     12     17     11
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           3                            17
  CLUS_2                           4                            16
  CLUS_3                           8                            16
  CLUS_4                           6                            12
  CLUS_5                          12                            17
  CLUS_6                           5                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED       10      7     10      6     15
  AMP PEAK  1(1Q21.3) WILD-TYPE     22      7     23     22     42
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          10                            22
  CLUS_2                           7                             7
  CLUS_3                          10                            23
  CLUS_4                           6                            22
  CLUS_5                          15                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.3) MUTATED       10     12      4      3     12      4
  AMP PEAK  1(1Q21.3) WILD-TYPE     17     24      8     16     20     14
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q21.3) MUTATED        3
  AMP PEAK  1(1Q21.3) WILD-TYPE     17
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          10                            17
  CLUS_2                          12                            24
  CLUS_3                           4                             8
  CLUS_4                           3                            16
  CLUS_5                          12                            20
  CLUS_6                           4                            14
  CLUS_7                           3                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED        9     16     16
  AMP PEAK  1(1Q21.3) WILD-TYPE     15     39     46
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           9                            15
  CLUS_2                          16                            39
  CLUS_3                          16                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED       10     18     13
  AMP PEAK  1(1Q21.3) WILD-TYPE     12     45     43
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          10                            12
  CLUS_2                          18                            45
  CLUS_3                          13                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.3) MUTATED        6      5      4      1
  AMP PEAK  1(1Q21.3) WILD-TYPE     11      9      9      5
D1V11, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           6                            11
  CLUS_2                           5                             9
  CLUS_3                           4                             9
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED        5      3      6      0      2
  AMP PEAK  1(1Q21.3) WILD-TYPE      6      9     10      6      3
D1V12, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           5                             6
  CLUS_2                           3                             9
  CLUS_3                           6                            10
  CLUS_4                           0                             6
  CLUS_5                           2                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q32.1) MUTATED        0      3      7      3      5
  AMP PEAK  2(1Q32.1) WILD-TYPE     13      5     13     10     10
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           3                             5
  CLUS_3                           7                            13
  CLUS_4                           3                            10
  CLUS_5                           5                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.1) MUTATED        1      0      3      3      3      3
  AMP PEAK  2(1Q32.1) WILD-TYPE      5     10      4      6      6      5
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  2(1Q32.1) MUTATED        2      2      1
  AMP PEAK  2(1Q32.1) WILD-TYPE      7      6      2
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           0                            10
  CLUS_3                           3                             4
  CLUS_4                           3                             6
  CLUS_5                           3                             6
  CLUS_6                           3                             5
  CLUS_7                           2                             7
  CLUS_8                           2                             6
  CLUS_9                           1                             2
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q32.1) MUTATED       11      8     11     17      2
  AMP PEAK  2(1Q32.1) WILD-TYPE     15     32     16     25     28
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          11                            15
  CLUS_2                           8                            32
  CLUS_3                          11                            16
  CLUS_4                          17                            25
  CLUS_5                           2                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q32.1) MUTATED        4      9      2      9      8
  AMP PEAK  2(1Q32.1) WILD-TYPE     10     14     15     16      9
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           9                            14
  CLUS_3                           2                            15
  CLUS_4                           9                            16
  CLUS_5                           8                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q32.1) MUTATED       18      9      2     11      0
  AMP PEAK  2(1Q32.1) WILD-TYPE     24     18     23     19      3
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          18                            24
  CLUS_2                           9                            18
  CLUS_3                           2                            23
  CLUS_4                          11                            19
  CLUS_5                           0                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.1) MUTATED        3      4      7      7     14      5
  AMP PEAK  2(1Q32.1) WILD-TYPE     17     16     17     11     15     11
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           3                            17
  CLUS_2                           4                            16
  CLUS_3                           7                            17
  CLUS_4                           7                            11
  CLUS_5                          14                            15
  CLUS_6                           5                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q32.1) MUTATED       10      6     11      6     16
  AMP PEAK  2(1Q32.1) WILD-TYPE     22      8     22     22     41
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          10                            22
  CLUS_2                           6                             8
  CLUS_3                          11                            22
  CLUS_4                           6                            22
  CLUS_5                          16                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.1) MUTATED        9     13      4      4     10      4
  AMP PEAK  2(1Q32.1) WILD-TYPE     18     23      8     15     22     14
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q32.1) MUTATED        5
  AMP PEAK  2(1Q32.1) WILD-TYPE     15
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           9                            18
  CLUS_2                          13                            23
  CLUS_3                           4                             8
  CLUS_4                           4                            15
  CLUS_5                          10                            22
  CLUS_6                           4                            14
  CLUS_7                           5                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        8     17     15
  AMP PEAK  2(1Q32.1) WILD-TYPE     16     38     47
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           8                            16
  CLUS_2                          17                            38
  CLUS_3                          15                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        7     19     14
  AMP PEAK  2(1Q32.1) WILD-TYPE     15     44     42
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           7                            15
  CLUS_2                          19                            44
  CLUS_3                          14                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        5      7      4      1
  AMP PEAK  2(1Q32.1) WILD-TYPE     12      7      9      5
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           5                            12
  CLUS_2                           7                             7
  CLUS_3                           4                             9
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q32.1) MUTATED        4      3      8      0      2
  AMP PEAK  2(1Q32.1) WILD-TYPE      7      9      8      6      3
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           4                             7
  CLUS_2                           3                             9
  CLUS_3                           8                             8
  CLUS_4                           0                             6
  CLUS_5                           2                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(6P21.1) MUTATED        0      3      4      7      6
  AMP PEAK  3(6P21.1) WILD-TYPE     13      5     16      6      9
D3V1, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           3                             5
  CLUS_3                           4                            16
  CLUS_4                           7                             6
  CLUS_5                           6                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(6P21.1) MUTATED        0      3      1      1      4      4
  AMP PEAK  3(6P21.1) WILD-TYPE      6      7      6      8      5      4
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  3(6P21.1) MUTATED        2      5      0
  AMP PEAK  3(6P21.1) WILD-TYPE      7      3      3
D3V2, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                           0                             6
  CLUS_2                           3                             7
  CLUS_3                           1                             6
  CLUS_4                           1                             8
  CLUS_5                           4                             5
  CLUS_6                           4                             4
  CLUS_7                           2                             7
  CLUS_8                           5                             3
  CLUS_9                           0                             3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(6P21.1) MUTATED       11     16     15     10      2
  AMP PEAK  3(6P21.1) WILD-TYPE     15     24     12     32     28
D3V3, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                          11                            15
  CLUS_2                          16                            24
  CLUS_3                          15                            12
  CLUS_4                          10                            32
  CLUS_5                           2                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(6P21.1) MUTATED        4      8      9      9      4
  AMP PEAK  3(6P21.1) WILD-TYPE     10     15      8     16     13
D3V4, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           8                            15
  CLUS_3                           9                             8
  CLUS_4                           9                            16
  CLUS_5                           4                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(6P21.1) MUTATED       17      6     11      7      0
  AMP PEAK  3(6P21.1) WILD-TYPE     25     21     14     23      3
D3V5, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                          17                            25
  CLUS_2                           6                            21
  CLUS_3                          11                            14
  CLUS_4                           7                            23
  CLUS_5                           0                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(6P21.1) MUTATED        8      5      5      9      5      9
  AMP PEAK  3(6P21.1) WILD-TYPE     12     15     19      9     24      7
D3V6, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                           8                            12
  CLUS_2                           5                            15
  CLUS_3                           5                            19
  CLUS_4                           9                             9
  CLUS_5                           5                            24
  CLUS_6                           9                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(6P21.1) MUTATED       14      5      9      8     18
  AMP PEAK  3(6P21.1) WILD-TYPE     18      9     24     20     39
D3V7, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                          14                            18
  CLUS_2                           5                             9
  CLUS_3                           9                            24
  CLUS_4                           8                            20
  CLUS_5                          18                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(6P21.1) MUTATED       11     15      4      5     11      1
  AMP PEAK  3(6P21.1) WILD-TYPE     16     21      8     14     21     17
                               vv
clus                            CLUS_7
  AMP PEAK  3(6P21.1) MUTATED        7
  AMP PEAK  3(6P21.1) WILD-TYPE     13
D3V8, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                          11                            16
  CLUS_2                          15                            21
  CLUS_3                           4                             8
  CLUS_4                           5                            14
  CLUS_5                          11                            21
  CLUS_6                           1                            17
  CLUS_7                           7                            13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(6P21.1) MUTATED       11     23     18
  AMP PEAK  3(6P21.1) WILD-TYPE     13     32     44
D3V9, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                          23                            32
  CLUS_3                          18                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(6P21.1) MUTATED       10     25     17
  AMP PEAK  3(6P21.1) WILD-TYPE     12     38     39
D3V10, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                          10                            12
  CLUS_2                          25                            38
  CLUS_3                          17                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(6P21.1) MUTATED       10      6      4      3
  AMP PEAK  3(6P21.1) WILD-TYPE      7      8      9      3
D3V11, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                          10                             7
  CLUS_2                           6                             8
  CLUS_3                           4                             9
  CLUS_4                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(6P21.1) MUTATED        8      5      6      2      2
  AMP PEAK  3(6P21.1) WILD-TYPE      3      7     10      4      3
D3V12, multiclass
        clus
vv       AMP PEAK  3(6P21.1) MUTATED AMP PEAK  3(6P21.1) WILD-TYPE
  CLUS_1                           8                             3
  CLUS_2                           5                             7
  CLUS_3                           6                            10
  CLUS_4                           2                             4
  CLUS_5                           2                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(8P11.23) MUTATED        3      1      4      1      8
  AMP PEAK  4(8P11.23) WILD-TYPE     10      7     16     12      7
D4V1, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                            3                             10
  CLUS_2                            1                              7
  CLUS_3                            4                             16
  CLUS_4                            1                             12
  CLUS_5                            8                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(8P11.23) MUTATED        1      2      0      2      3      5
  AMP PEAK  4(8P11.23) WILD-TYPE      5      8      7      7      6      3
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  4(8P11.23) MUTATED        1      2      1
  AMP PEAK  4(8P11.23) WILD-TYPE      8      6      2
D4V2, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            2                              8
  CLUS_3                            0                              7
  CLUS_4                            2                              7
  CLUS_5                            3                              6
  CLUS_6                            5                              3
  CLUS_7                            1                              8
  CLUS_8                            2                              6
  CLUS_9                            1                              2
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(8P11.23) MUTATED        4     19      7     23      0
  AMP PEAK  4(8P11.23) WILD-TYPE     22     21     20     19     30
D4V3, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                            4                             22
  CLUS_2                           19                             21
  CLUS_3                            7                             20
  CLUS_4                           23                             19
  CLUS_5                            0                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(8P11.23) MUTATED        3      6     10      9      8
  AMP PEAK  4(8P11.23) WILD-TYPE     11     17      7     16      9
D4V4, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            6                             17
  CLUS_3                           10                              7
  CLUS_4                            9                             16
  CLUS_5                            8                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(8P11.23) MUTATED       11     12      7     12      1
  AMP PEAK  4(8P11.23) WILD-TYPE     31     15     18     18      2
D4V5, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                           12                             15
  CLUS_3                            7                             18
  CLUS_4                           12                             18
  CLUS_5                            1                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(8P11.23) MUTATED        7      5     12      7      5      7
  AMP PEAK  4(8P11.23) WILD-TYPE     13     15     12     11     24      9
D4V6, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                            7                             13
  CLUS_2                            5                             15
  CLUS_3                           12                             12
  CLUS_4                            7                             11
  CLUS_5                            5                             24
  CLUS_6                            7                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(8P11.23) MUTATED       13      3      9     14     14
  AMP PEAK  4(8P11.23) WILD-TYPE     19     11     24     14     43
D4V7, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                           13                             19
  CLUS_2                            3                             11
  CLUS_3                            9                             24
  CLUS_4                           14                             14
  CLUS_5                           14                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(8P11.23) MUTATED       13     10      6      8      7      2
  AMP PEAK  4(8P11.23) WILD-TYPE     14     26      6     11     25     16
                                vv
clus                             CLUS_7
  AMP PEAK  4(8P11.23) MUTATED        7
  AMP PEAK  4(8P11.23) WILD-TYPE     13
D4V8, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                           13                             14
  CLUS_2                           10                             26
  CLUS_3                            6                              6
  CLUS_4                            8                             11
  CLUS_5                            7                             25
  CLUS_6                            2                             16
  CLUS_7                            7                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(8P11.23) MUTATED        8     25     13
  AMP PEAK  4(8P11.23) WILD-TYPE     16     30     49
D4V9, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                            8                             16
  CLUS_2                           25                             30
  CLUS_3                           13                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(8P11.23) MUTATED        9     26     11
  AMP PEAK  4(8P11.23) WILD-TYPE     13     37     45
D4V10, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                            9                             13
  CLUS_2                           26                             37
  CLUS_3                           11                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(8P11.23) MUTATED        7      7      7      3
  AMP PEAK  4(8P11.23) WILD-TYPE     10      7      6      3
D4V11, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                            7                             10
  CLUS_2                            7                              7
  CLUS_3                            7                              6
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(8P11.23) MUTATED        4      4      8      3      5
  AMP PEAK  4(8P11.23) WILD-TYPE      7      8      8      3      0
D4V12, multiclass
        clus
vv       AMP PEAK  4(8P11.23) MUTATED AMP PEAK  4(8P11.23) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            4                              8
  CLUS_3                            8                              8
  CLUS_4                            3                              3
  CLUS_5                            5                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(8P11.21) MUTATED        3      1      9      3     10
  AMP PEAK  5(8P11.21) WILD-TYPE     10      7     11     10      5
D5V1, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                            3                             10
  CLUS_2                            1                              7
  CLUS_3                            9                             11
  CLUS_4                            3                             10
  CLUS_5                           10                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(8P11.21) MUTATED        1      4      1      3      6      4
  AMP PEAK  5(8P11.21) WILD-TYPE      5      6      6      6      3      4
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  5(8P11.21) MUTATED        1      4      2
  AMP PEAK  5(8P11.21) WILD-TYPE      8      4      1
D5V2, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            4                              6
  CLUS_3                            1                              6
  CLUS_4                            3                              6
  CLUS_5                            6                              3
  CLUS_6                            4                              4
  CLUS_7                            1                              8
  CLUS_8                            4                              4
  CLUS_9                            2                              1
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(8P11.21) MUTATED        9     19      9     32      1
  AMP PEAK  5(8P11.21) WILD-TYPE     17     21     18     10     29
D5V3, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                            9                             17
  CLUS_2                           19                             21
  CLUS_3                            9                             18
  CLUS_4                           32                             10
  CLUS_5                            1                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(8P11.21) MUTATED        6      6     10     10     13
  AMP PEAK  5(8P11.21) WILD-TYPE      8     17      7     15      4
D5V4, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            6                             17
  CLUS_3                           10                              7
  CLUS_4                           10                             15
  CLUS_5                           13                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(8P11.21) MUTATED       19     16      8     14      1
  AMP PEAK  5(8P11.21) WILD-TYPE     23     11     17     16      2
D5V5, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                           19                             23
  CLUS_2                           16                             11
  CLUS_3                            8                             17
  CLUS_4                           14                             16
  CLUS_5                            1                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(8P11.21) MUTATED        6     10     13      9     13      7
  AMP PEAK  5(8P11.21) WILD-TYPE     14     10     11      9     16      9
D5V6, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                            6                             14
  CLUS_2                           10                             10
  CLUS_3                           13                             11
  CLUS_4                            9                              9
  CLUS_5                           13                             16
  CLUS_6                            7                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(8P11.21) MUTATED       14      6     11     16     23
  AMP PEAK  5(8P11.21) WILD-TYPE     18      8     22     12     34
D5V7, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                           14                             18
  CLUS_2                            6                              8
  CLUS_3                           11                             22
  CLUS_4                           16                             12
  CLUS_5                           23                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(8P11.21) MUTATED       17     14      5      8     14      3
  AMP PEAK  5(8P11.21) WILD-TYPE     10     22      7     11     18     15
                                vv
clus                             CLUS_7
  AMP PEAK  5(8P11.21) MUTATED        9
  AMP PEAK  5(8P11.21) WILD-TYPE     11
D5V8, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                           17                             10
  CLUS_2                           14                             22
  CLUS_3                            5                              7
  CLUS_4                            8                             11
  CLUS_5                           14                             18
  CLUS_6                            3                             15
  CLUS_7                            9                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8P11.21) MUTATED        7     30     22
  AMP PEAK  5(8P11.21) WILD-TYPE     17     25     40
D5V9, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                           30                             25
  CLUS_3                           22                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8P11.21) MUTATED       11     29     19
  AMP PEAK  5(8P11.21) WILD-TYPE     11     34     37
D5V10, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                           11                             11
  CLUS_2                           29                             34
  CLUS_3                           19                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(8P11.21) MUTATED        7     11      7      3
  AMP PEAK  5(8P11.21) WILD-TYPE     10      3      6      3
D5V11, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                            7                             10
  CLUS_2                           11                              3
  CLUS_3                            7                              6
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(8P11.21) MUTATED        4      6      9      4      5
  AMP PEAK  5(8P11.21) WILD-TYPE      7      6      7      2      0
D5V12, multiclass
        clus
vv       AMP PEAK  5(8P11.21) MUTATED AMP PEAK  5(8P11.21) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            6                              6
  CLUS_3                            9                              7
  CLUS_4                            4                              2
  CLUS_5                            5                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8Q24.21) MUTATED        6      6     11      7     14
  AMP PEAK  6(8Q24.21) WILD-TYPE      7      2      9      6      1
D6V1, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                            6                              7
  CLUS_2                            6                              2
  CLUS_3                           11                              9
  CLUS_4                            7                              6
  CLUS_5                           14                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(8Q24.21) MUTATED        3      6      3      6      9      6
  AMP PEAK  6(8Q24.21) WILD-TYPE      3      4      4      3      0      2
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  6(8Q24.21) MUTATED        4      5      2
  AMP PEAK  6(8Q24.21) WILD-TYPE      5      3      1
D6V2, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            6                              4
  CLUS_3                            3                              4
  CLUS_4                            6                              3
  CLUS_5                            9                              0
  CLUS_6                            6                              2
  CLUS_7                            4                              5
  CLUS_8                            5                              3
  CLUS_9                            2                              1
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8Q24.21) MUTATED       20     32     13     40      4
  AMP PEAK  6(8Q24.21) WILD-TYPE      6      8     14      2     26
D6V3, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           20                              6
  CLUS_2                           32                              8
  CLUS_3                           13                             14
  CLUS_4                           40                              2
  CLUS_5                            4                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8Q24.21) MUTATED        9     11     15     16     14
  AMP PEAK  6(8Q24.21) WILD-TYPE      5     12      2      9      3
D6V4, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                            9                              5
  CLUS_2                           11                             12
  CLUS_3                           15                              2
  CLUS_4                           16                              9
  CLUS_5                           14                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8Q24.21) MUTATED       27     20     17     21      2
  AMP PEAK  6(8Q24.21) WILD-TYPE     15      7      8      9      1
D6V5, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           27                             15
  CLUS_2                           20                              7
  CLUS_3                           17                              8
  CLUS_4                           21                              9
  CLUS_5                            2                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(8Q24.21) MUTATED       14     14     19     13     18      9
  AMP PEAK  6(8Q24.21) WILD-TYPE      6      6      5      5     11      7
D6V6, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           14                              6
  CLUS_2                           14                              6
  CLUS_3                           19                              5
  CLUS_4                           13                              5
  CLUS_5                           18                             11
  CLUS_6                            9                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8Q24.21) MUTATED       23      7     17     21     40
  AMP PEAK  6(8Q24.21) WILD-TYPE      9      7     16      7     17
D6V7, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           23                              9
  CLUS_2                            7                              7
  CLUS_3                           17                             16
  CLUS_4                           21                              7
  CLUS_5                           40                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(8Q24.21) MUTATED       22     18      9     15     23      8
  AMP PEAK  6(8Q24.21) WILD-TYPE      5     18      3      4      9     10
                                vv
clus                             CLUS_7
  AMP PEAK  6(8Q24.21) MUTATED       13
  AMP PEAK  6(8Q24.21) WILD-TYPE      7
D6V8, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           22                              5
  CLUS_2                           18                             18
  CLUS_3                            9                              3
  CLUS_4                           15                              4
  CLUS_5                           23                              9
  CLUS_6                            8                             10
  CLUS_7                           13                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8Q24.21) MUTATED       14     41     39
  AMP PEAK  6(8Q24.21) WILD-TYPE     10     14     23
D6V9, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           14                             10
  CLUS_2                           41                             14
  CLUS_3                           39                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8Q24.21) MUTATED       18     41     35
  AMP PEAK  6(8Q24.21) WILD-TYPE      4     22     21
D6V10, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           18                              4
  CLUS_2                           41                             22
  CLUS_3                           35                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8Q24.21) MUTATED       12     14      9      4
  AMP PEAK  6(8Q24.21) WILD-TYPE      5      0      4      2
D6V11, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                           12                              5
  CLUS_2                           14                              0
  CLUS_3                            9                              4
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8Q24.21) MUTATED        9      7     13      5      5
  AMP PEAK  6(8Q24.21) WILD-TYPE      2      5      3      1      0
D6V12, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) MUTATED AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                            9                              2
  CLUS_2                            7                              5
  CLUS_3                           13                              3
  CLUS_4                            5                              1
  CLUS_5                            5                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(10Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(10Q22.2) MUTATED        1      1      1      2      1
  AMP PEAK  7(10Q22.2) WILD-TYPE     12      7     19     11     14
D7V1, multiclass
        clus
vv       AMP PEAK  7(10Q22.2) MUTATED AMP PEAK  7(10Q22.2) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            1                              7
  CLUS_3                            1                             19
  CLUS_4                            2                             11
  CLUS_5                            1                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(10Q22.2) MUTATED        1      1      0      2      1      0
  AMP PEAK  7(10Q22.2) WILD-TYPE      5      9      7      7      8      8
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  7(10Q22.2) MUTATED        1      0      0
  AMP PEAK  7(10Q22.2) WILD-TYPE      8      8      3
D7V2, multiclass
        clus
vv       AMP PEAK  7(10Q22.2) MUTATED AMP PEAK  7(10Q22.2) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            1                              9
  CLUS_3                            0                              7
  CLUS_4                            2                              7
  CLUS_5                            1                              8
  CLUS_6                            0                              8
  CLUS_7                            1                              8
  CLUS_8                            0                              8
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(10Q22.2) MUTATED        2      3      0      5      1
  AMP PEAK  7(10Q22.2) WILD-TYPE     24     37     27     37     29
D7V3, multiclass
        clus
vv       AMP PEAK  7(10Q22.2) MUTATED AMP PEAK  7(10Q22.2) WILD-TYPE
  CLUS_1                            2                             24
  CLUS_2                            3                             37
  CLUS_3                            0                             27
  CLUS_4                            5                             37
  CLUS_5                            1                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(10Q22.2) MUTATED        1      2      0      2      0
  AMP PEAK  7(10Q22.2) WILD-TYPE     13     21     17     23     17
D7V4, multiclass
        clus
vv       AMP PEAK  7(10Q22.2) MUTATED AMP PEAK  7(10Q22.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            2                             21
  CLUS_3                            0                             17
  CLUS_4                            2                             23
  CLUS_5                            0                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(10Q22.2) MUTATED        4      1      1      3      0
  AMP PEAK  7(10Q22.2) WILD-TYPE     38     26     24     27      3
D7V5, multiclass
        clus
vv       AMP PEAK  7(10Q22.2) MUTATED AMP PEAK  7(10Q22.2) WILD-TYPE
  CLUS_1                            4                             38
  CLUS_2                            1                             26
  CLUS_3                            1                             24
  CLUS_4                            3                             27
  CLUS_5                            0                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(10Q22.2) MUTATED        1      1      1      2      3      1
  AMP PEAK  7(10Q22.2) WILD-TYPE     19     19     23     16     26     15
D7V6, multiclass
        clus
vv       AMP PEAK  7(10Q22.2) MUTATED AMP PEAK  7(10Q22.2) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            1                             19
  CLUS_3                            1                             23
  CLUS_4                            2                             16
  CLUS_5                            3                             26
  CLUS_6                            1                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(10Q22.2) MUTATED        1      0      2      0      7
  AMP PEAK  7(10Q22.2) WILD-TYPE     31     14     31     28     50
D7V7, multiclass
        clus
vv       AMP PEAK  7(10Q22.2) MUTATED AMP PEAK  7(10Q22.2) WILD-TYPE
  CLUS_1                            1                             31
  CLUS_2                            0                             14
  CLUS_3                            2                             31
  CLUS_4                            0                             28
  CLUS_5                            7                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(10Q22.2) MUTATED        0      2      1      0      4      3
  AMP PEAK  7(10Q22.2) WILD-TYPE     27     34     11     19     28     15
                                vv
clus                             CLUS_7
  AMP PEAK  7(10Q22.2) MUTATED        0
  AMP PEAK  7(10Q22.2) WILD-TYPE     20
D7V8, multiclass
        clus
vv       AMP PEAK  7(10Q22.2) MUTATED AMP PEAK  7(10Q22.2) WILD-TYPE
  CLUS_1                            0                             27
  CLUS_2                            2                             34
  CLUS_3                            1                             11
  CLUS_4                            0                             19
  CLUS_5                            4                             28
  CLUS_6                            3                             15
  CLUS_7                            0                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(10Q22.2) MUTATED        0      3      7
  AMP PEAK  7(10Q22.2) WILD-TYPE     24     52     55
D7V9, multiclass
        clus
vv       AMP PEAK  7(10Q22.2) MUTATED AMP PEAK  7(10Q22.2) WILD-TYPE
  CLUS_1                            0                             24
  CLUS_2                            3                             52
  CLUS_3                            7                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(10Q22.2) MUTATED        2      2      6
  AMP PEAK  7(10Q22.2) WILD-TYPE     20     61     50
D7V10, multiclass
        clus
vv       AMP PEAK  7(10Q22.2) MUTATED AMP PEAK  7(10Q22.2) WILD-TYPE
  CLUS_1                            2                             20
  CLUS_2                            2                             61
  CLUS_3                            6                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(10Q22.2) MUTATED        0      2      0      0
  AMP PEAK  7(10Q22.2) WILD-TYPE     17     12     13      6
D7V11, multiclass
[1] "Remove cluster labels:"       "AMP PEAK  7(10Q22.2) MUTATED"
clus
  AMP PEAK  7(10Q22.2) MUTATED AMP PEAK  7(10Q22.2) WILD-TYPE 
                             2                             48 
                    TCGA-AF-2687                     TCGA-AF-3911 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-AF-4110                     TCGA-AF-6655 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-AF-6672                     TCGA-AG-3725 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3732 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4021                     TCGA-AG-4022 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-CI-6620 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6621                     TCGA-CI-6624 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4749 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6681 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DG 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EI-6506 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6509 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6513 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-F5-6464 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(10Q22.2) MUTATED        1      0      1      0      0
  AMP PEAK  7(10Q22.2) WILD-TYPE     10     12     15      6      5
D7V12, multiclass
[1] "Remove cluster labels:"       "AMP PEAK  7(10Q22.2) MUTATED"
clus
  AMP PEAK  7(10Q22.2) MUTATED AMP PEAK  7(10Q22.2) WILD-TYPE 
                             2                             48 
                    TCGA-AF-2687                     TCGA-AF-3911 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-AF-4110                     TCGA-AF-6655 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-AF-6672                     TCGA-AG-3725 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3732 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4021                     TCGA-AG-4022 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-CI-6620 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6621                     TCGA-CI-6624 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4749 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6681 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DG 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EI-6506 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6509 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6513 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-F5-6464 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK  7(10Q22.2) WILD-TYPE" "AMP PEAK  7(10Q22.2) WILD-TYPE" 

Clustering(8) Variable = AMP PEAK  8(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(11P15.5) MUTATED        5      2      5      2      4
  AMP PEAK  8(11P15.5) WILD-TYPE      8      6     15     11     11
D8V1, multiclass
        clus
vv       AMP PEAK  8(11P15.5) MUTATED AMP PEAK  8(11P15.5) WILD-TYPE
  CLUS_1                            5                              8
  CLUS_2                            2                              6
  CLUS_3                            5                             15
  CLUS_4                            2                             11
  CLUS_5                            4                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(11P15.5) MUTATED        5      2      2      2      2      1
  AMP PEAK  8(11P15.5) WILD-TYPE      1      8      5      7      7      7
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  8(11P15.5) MUTATED        1      3      0
  AMP PEAK  8(11P15.5) WILD-TYPE      8      5      3
D8V2, multiclass
        clus
vv       AMP PEAK  8(11P15.5) MUTATED AMP PEAK  8(11P15.5) WILD-TYPE
  CLUS_1                            5                              1
  CLUS_2                            2                              8
  CLUS_3                            2                              5
  CLUS_4                            2                              7
  CLUS_5                            2                              7
  CLUS_6                            1                              7
  CLUS_7                            1                              8
  CLUS_8                            3                              5
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(11P15.5) MUTATED        5     17      5      9      9
  AMP PEAK  8(11P15.5) WILD-TYPE     21     23     22     33     21
D8V3, multiclass
        clus
vv       AMP PEAK  8(11P15.5) MUTATED AMP PEAK  8(11P15.5) WILD-TYPE
  CLUS_1                            5                             21
  CLUS_2                           17                             23
  CLUS_3                            5                             22
  CLUS_4                            9                             33
  CLUS_5                            9                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(11P15.5) MUTATED        0      7      6      7      6
  AMP PEAK  8(11P15.5) WILD-TYPE     14     16     11     18     11
D8V4, multiclass
        clus
vv       AMP PEAK  8(11P15.5) MUTATED AMP PEAK  8(11P15.5) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            7                             16
  CLUS_3                            6                             11
  CLUS_4                            7                             18
  CLUS_5                            6                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(11P15.5) MUTATED       15      7      7      7      0
  AMP PEAK  8(11P15.5) WILD-TYPE     27     20     18     23      3
D8V5, multiclass
        clus
vv       AMP PEAK  8(11P15.5) MUTATED AMP PEAK  8(11P15.5) WILD-TYPE
  CLUS_1                           15                             27
  CLUS_2                            7                             20
  CLUS_3                            7                             18
  CLUS_4                            7                             23
  CLUS_5                            0                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(11P15.5) MUTATED        8      6      6      5      6      5
  AMP PEAK  8(11P15.5) WILD-TYPE     12     14     18     13     23     11
D8V6, multiclass
        clus
vv       AMP PEAK  8(11P15.5) MUTATED AMP PEAK  8(11P15.5) WILD-TYPE
  CLUS_1                            8                             12
  CLUS_2                            6                             14
  CLUS_3                            6                             18
  CLUS_4                            5                             13
  CLUS_5                            6                             23
  CLUS_6                            5                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(11P15.5) MUTATED        6      2      9     13     14
  AMP PEAK  8(11P15.5) WILD-TYPE     26     12     24     15     43
D8V7, multiclass
        clus
vv       AMP PEAK  8(11P15.5) MUTATED AMP PEAK  8(11P15.5) WILD-TYPE
  CLUS_1                            6                             26
  CLUS_2                            2                             12
  CLUS_3                            9                             24
  CLUS_4                           13                             15
  CLUS_5                           14                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(11P15.5) MUTATED        7      8      2     10     14      2
  AMP PEAK  8(11P15.5) WILD-TYPE     20     28     10      9     18     16
                                vv
clus                             CLUS_7
  AMP PEAK  8(11P15.5) MUTATED        1
  AMP PEAK  8(11P15.5) WILD-TYPE     19
D8V8, multiclass
        clus
vv       AMP PEAK  8(11P15.5) MUTATED AMP PEAK  8(11P15.5) WILD-TYPE
  CLUS_1                            7                             20
  CLUS_2                            8                             28
  CLUS_3                            2                             10
  CLUS_4                           10                              9
  CLUS_5                           14                             18
  CLUS_6                            2                             16
  CLUS_7                            1                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(11P15.5) MUTATED        5     20     15
  AMP PEAK  8(11P15.5) WILD-TYPE     19     35     47
D8V9, multiclass
        clus
vv       AMP PEAK  8(11P15.5) MUTATED AMP PEAK  8(11P15.5) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                           20                             35
  CLUS_3                           15                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(11P15.5) MUTATED        5     21     14
  AMP PEAK  8(11P15.5) WILD-TYPE     17     42     42
D8V10, multiclass
        clus
vv       AMP PEAK  8(11P15.5) MUTATED AMP PEAK  8(11P15.5) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                           21                             42
  CLUS_3                           14                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(11P15.5) MUTATED        3      4      3      3
  AMP PEAK  8(11P15.5) WILD-TYPE     14     10     10      3
D8V11, multiclass
        clus
vv       AMP PEAK  8(11P15.5) MUTATED AMP PEAK  8(11P15.5) WILD-TYPE
  CLUS_1                            3                             14
  CLUS_2                            4                             10
  CLUS_3                            3                             10
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(11P15.5) MUTATED        3      1      5      3      1
  AMP PEAK  8(11P15.5) WILD-TYPE      8     11     11      3      4
D8V12, multiclass
        clus
vv       AMP PEAK  8(11P15.5) MUTATED AMP PEAK  8(11P15.5) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                            1                             11
  CLUS_3                            5                             11
  CLUS_4                            3                              3
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(11Q13.3) MUTATED        2      0      0      2      4
  AMP PEAK  9(11Q13.3) WILD-TYPE     11      8     20     11     11
D9V1, multiclass
        clus
vv       AMP PEAK  9(11Q13.3) MUTATED AMP PEAK  9(11Q13.3) WILD-TYPE
  CLUS_1                            2                             11
  CLUS_2                            0                              8
  CLUS_3                            0                             20
  CLUS_4                            2                             11
  CLUS_5                            4                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(11Q13.3) MUTATED        0      2      0      0      2      1
  AMP PEAK  9(11Q13.3) WILD-TYPE      6      8      7      9      7      7
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  9(11Q13.3) MUTATED        0      3      0
  AMP PEAK  9(11Q13.3) WILD-TYPE      9      5      3
D9V2, multiclass
        clus
vv       AMP PEAK  9(11Q13.3) MUTATED AMP PEAK  9(11Q13.3) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            2                              8
  CLUS_3                            0                              7
  CLUS_4                            0                              9
  CLUS_5                            2                              7
  CLUS_6                            1                              7
  CLUS_7                            0                              9
  CLUS_8                            3                              5
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(11Q13.3) MUTATED        4     13      5      3      3
  AMP PEAK  9(11Q13.3) WILD-TYPE     22     27     22     39     27
D9V3, multiclass
        clus
vv       AMP PEAK  9(11Q13.3) MUTATED AMP PEAK  9(11Q13.3) WILD-TYPE
  CLUS_1                            4                             22
  CLUS_2                           13                             27
  CLUS_3                            5                             22
  CLUS_4                            3                             39
  CLUS_5                            3                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(11Q13.3) MUTATED        2      3      8      2      5
  AMP PEAK  9(11Q13.3) WILD-TYPE     12     20      9     23     12
D9V4, multiclass
        clus
vv       AMP PEAK  9(11Q13.3) MUTATED AMP PEAK  9(11Q13.3) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            3                             20
  CLUS_3                            8                              9
  CLUS_4                            2                             23
  CLUS_5                            5                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(11Q13.3) MUTATED        6      4      5      6      0
  AMP PEAK  9(11Q13.3) WILD-TYPE     36     23     20     24      3
D9V5, multiclass
        clus
vv       AMP PEAK  9(11Q13.3) MUTATED AMP PEAK  9(11Q13.3) WILD-TYPE
  CLUS_1                            6                             36
  CLUS_2                            4                             23
  CLUS_3                            5                             20
  CLUS_4                            6                             24
  CLUS_5                            0                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(11Q13.3) MUTATED        3      2      7      3      2      4
  AMP PEAK  9(11Q13.3) WILD-TYPE     17     18     17     15     27     12
D9V6, multiclass
        clus
vv       AMP PEAK  9(11Q13.3) MUTATED AMP PEAK  9(11Q13.3) WILD-TYPE
  CLUS_1                            3                             17
  CLUS_2                            2                             18
  CLUS_3                            7                             17
  CLUS_4                            3                             15
  CLUS_5                            2                             27
  CLUS_6                            4                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(11Q13.3) MUTATED        9      2      0      8      9
  AMP PEAK  9(11Q13.3) WILD-TYPE     23     12     33     20     48
D9V7, multiclass
        clus
vv       AMP PEAK  9(11Q13.3) MUTATED AMP PEAK  9(11Q13.3) WILD-TYPE
  CLUS_1                            9                             23
  CLUS_2                            2                             12
  CLUS_3                            0                             33
  CLUS_4                            8                             20
  CLUS_5                            9                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(11Q13.3) MUTATED        8      2      2      7      7      1
  AMP PEAK  9(11Q13.3) WILD-TYPE     19     34     10     12     25     17
                                vv
clus                             CLUS_7
  AMP PEAK  9(11Q13.3) MUTATED        1
  AMP PEAK  9(11Q13.3) WILD-TYPE     19
D9V8, multiclass
        clus
vv       AMP PEAK  9(11Q13.3) MUTATED AMP PEAK  9(11Q13.3) WILD-TYPE
  CLUS_1                            8                             19
  CLUS_2                            2                             34
  CLUS_3                            2                             10
  CLUS_4                            7                             12
  CLUS_5                            7                             25
  CLUS_6                            1                             17
  CLUS_7                            1                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(11Q13.3) MUTATED        7     10      6
  AMP PEAK  9(11Q13.3) WILD-TYPE     17     45     56
D9V9, multiclass
        clus
vv       AMP PEAK  9(11Q13.3) MUTATED AMP PEAK  9(11Q13.3) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                           10                             45
  CLUS_3                            6                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(11Q13.3) MUTATED        5     12      6
  AMP PEAK  9(11Q13.3) WILD-TYPE     17     51     50
D9V10, multiclass
        clus
vv       AMP PEAK  9(11Q13.3) MUTATED AMP PEAK  9(11Q13.3) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                           12                             51
  CLUS_3                            6                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(11Q13.3) MUTATED        4      2      1      4
  AMP PEAK  9(11Q13.3) WILD-TYPE     13     12     12      2
D9V11, multiclass
        clus
vv       AMP PEAK  9(11Q13.3) MUTATED AMP PEAK  9(11Q13.3) WILD-TYPE
  CLUS_1                            4                             13
  CLUS_2                            2                             12
  CLUS_3                            1                             12
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(11Q13.3) MUTATED        3      2      1      3      2
  AMP PEAK  9(11Q13.3) WILD-TYPE      8     10     15      3      3
D9V12, multiclass
        clus
vv       AMP PEAK  9(11Q13.3) MUTATED AMP PEAK  9(11Q13.3) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                            2                             10
  CLUS_3                            1                             15
  CLUS_4                            3                              3
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(12P13.33) MUTATED        2      3      6      5      1
  AMP PEAK 10(12P13.33) WILD-TYPE     11      5     14      8     14
D10V1, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                             2                              11
  CLUS_2                             3                               5
  CLUS_3                             6                              14
  CLUS_4                             5                               8
  CLUS_5                             1                              14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(12P13.33) MUTATED        2      1      1      6      2      1
  AMP PEAK 10(12P13.33) WILD-TYPE      4      9      6      3      7      7
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 10(12P13.33) MUTATED        1      3      0
  AMP PEAK 10(12P13.33) WILD-TYPE      8      5      3
D10V2, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             1                               9
  CLUS_3                             1                               6
  CLUS_4                             6                               3
  CLUS_5                             2                               7
  CLUS_6                             1                               7
  CLUS_7                             1                               8
  CLUS_8                             3                               5
  CLUS_9                             0                               3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(12P13.33) MUTATED        8      6      6     16      5
  AMP PEAK 10(12P13.33) WILD-TYPE     18     34     21     26     25
D10V3, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                             8                              18
  CLUS_2                             6                              34
  CLUS_3                             6                              21
  CLUS_4                            16                              26
  CLUS_5                             5                              25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(12P13.33) MUTATED        6      4      3      4      6
  AMP PEAK 10(12P13.33) WILD-TYPE      8     19     14     21     11
D10V4, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                             6                               8
  CLUS_2                             4                              19
  CLUS_3                             3                              14
  CLUS_4                             4                              21
  CLUS_5                             6                              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(12P13.33) MUTATED       12      4     11      4      0
  AMP PEAK 10(12P13.33) WILD-TYPE     30     23     14     26      3
D10V5, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            12                              30
  CLUS_2                             4                              23
  CLUS_3                            11                              14
  CLUS_4                             4                              26
  CLUS_5                             0                               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(12P13.33) MUTATED        7      3      4      4      8      5
  AMP PEAK 10(12P13.33) WILD-TYPE     13     17     20     14     21     11
D10V6, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                             7                              13
  CLUS_2                             3                              17
  CLUS_3                             4                              20
  CLUS_4                             4                              14
  CLUS_5                             8                              21
  CLUS_6                             5                              11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(12P13.33) MUTATED        6      3     11      9     12
  AMP PEAK 10(12P13.33) WILD-TYPE     26     11     22     19     45
D10V7, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                             6                              26
  CLUS_2                             3                              11
  CLUS_3                            11                              22
  CLUS_4                             9                              19
  CLUS_5                            12                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(12P13.33) MUTATED        7     10      3      3      9      7
  AMP PEAK 10(12P13.33) WILD-TYPE     20     26      9     16     23     11
                                 vv
clus                              CLUS_7
  AMP PEAK 10(12P13.33) MUTATED        2
  AMP PEAK 10(12P13.33) WILD-TYPE     18
D10V8, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                             7                              20
  CLUS_2                            10                              26
  CLUS_3                             3                               9
  CLUS_4                             3                              16
  CLUS_5                             9                              23
  CLUS_6                             7                              11
  CLUS_7                             2                              18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P13.33) MUTATED        7     16     15
  AMP PEAK 10(12P13.33) WILD-TYPE     17     39     47
D10V9, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                             7                              17
  CLUS_2                            16                              39
  CLUS_3                            15                              47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P13.33) MUTATED        7     17     14
  AMP PEAK 10(12P13.33) WILD-TYPE     15     46     42
D10V10, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                             7                              15
  CLUS_2                            17                              46
  CLUS_3                            14                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12P13.33) MUTATED        5      6      3      0
  AMP PEAK 10(12P13.33) WILD-TYPE     12      8     10      6
D10V11, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                             5                              12
  CLUS_2                             6                               8
  CLUS_3                             3                              10
  CLUS_4                             0                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(12P13.33) MUTATED        3      6      5      0      0
  AMP PEAK 10(12P13.33) WILD-TYPE      8      6     11      6      5
D10V12, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                             3                               8
  CLUS_2                             6                               6
  CLUS_3                             5                              11
  CLUS_4                             0                               6
  CLUS_5                             0                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12P12.1) MUTATED        2      3      6      5      2
  AMP PEAK 11(12P12.1) WILD-TYPE     11      5     14      8     13
D11V1, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                            2                             11
  CLUS_2                            3                              5
  CLUS_3                            6                             14
  CLUS_4                            5                              8
  CLUS_5                            2                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P12.1) MUTATED        2      1      1      6      3      1
  AMP PEAK 11(12P12.1) WILD-TYPE      4      9      6      3      6      7
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 11(12P12.1) MUTATED        1      3      0
  AMP PEAK 11(12P12.1) WILD-TYPE      8      5      3
D11V2, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            1                              9
  CLUS_3                            1                              6
  CLUS_4                            6                              3
  CLUS_5                            3                              6
  CLUS_6                            1                              7
  CLUS_7                            1                              8
  CLUS_8                            3                              5
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12P12.1) MUTATED        8      5      6     16      5
  AMP PEAK 11(12P12.1) WILD-TYPE     18     35     21     26     25
D11V3, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                            8                             18
  CLUS_2                            5                             35
  CLUS_3                            6                             21
  CLUS_4                           16                             26
  CLUS_5                            5                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12P12.1) MUTATED        7      3      2      5      4
  AMP PEAK 11(12P12.1) WILD-TYPE      7     20     15     20     13
D11V4, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                            7                              7
  CLUS_2                            3                             20
  CLUS_3                            2                             15
  CLUS_4                            5                             20
  CLUS_5                            4                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12P12.1) MUTATED       11      3     11      3      0
  AMP PEAK 11(12P12.1) WILD-TYPE     31     24     14     27      3
D11V5, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                            3                             24
  CLUS_3                           11                             14
  CLUS_4                            3                             27
  CLUS_5                            0                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P12.1) MUTATED        7      3      3      4      8      3
  AMP PEAK 11(12P12.1) WILD-TYPE     13     17     21     14     21     13
D11V6, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                            7                             13
  CLUS_2                            3                             17
  CLUS_3                            3                             21
  CLUS_4                            4                             14
  CLUS_5                            8                             21
  CLUS_6                            3                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12P12.1) MUTATED        5      3     12      7     13
  AMP PEAK 11(12P12.1) WILD-TYPE     27     11     21     21     44
D11V7, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                            5                             27
  CLUS_2                            3                             11
  CLUS_3                           12                             21
  CLUS_4                            7                             21
  CLUS_5                           13                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P12.1) MUTATED        5     10      3      3     10      7
  AMP PEAK 11(12P12.1) WILD-TYPE     22     26      9     16     22     11
                                vv
clus                             CLUS_7
  AMP PEAK 11(12P12.1) MUTATED        2
  AMP PEAK 11(12P12.1) WILD-TYPE     18
D11V8, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                           10                             26
  CLUS_3                            3                              9
  CLUS_4                            3                             16
  CLUS_5                           10                             22
  CLUS_6                            7                             11
  CLUS_7                            2                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED        6     15     16
  AMP PEAK 11(12P12.1) WILD-TYPE     18     40     46
D11V9, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                           15                             40
  CLUS_3                           16                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED        7     15     15
  AMP PEAK 11(12P12.1) WILD-TYPE     15     48     41
D11V10, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                            7                             15
  CLUS_2                           15                             48
  CLUS_3                           15                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P12.1) MUTATED        4      6      2      1
  AMP PEAK 11(12P12.1) WILD-TYPE     13      8     11      5
D11V11, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                            4                             13
  CLUS_2                            6                              8
  CLUS_3                            2                             11
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12P12.1) MUTATED        5      3      5      0      0
  AMP PEAK 11(12P12.1) WILD-TYPE      6      9     11      6      5
D11V12, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                            5                              6
  CLUS_2                            3                              9
  CLUS_3                            5                             11
  CLUS_4                            0                              6
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(13Q12.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(13Q12.13) MUTATED        7      7     16      7     11
  AMP PEAK 12(13Q12.13) WILD-TYPE      6      1      4      6      4
D12V1, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                             7                               6
  CLUS_2                             7                               1
  CLUS_3                            16                               4
  CLUS_4                             7                               6
  CLUS_5                            11                               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(13Q12.13) MUTATED        3      7      5      4      8      5
  AMP PEAK 12(13Q12.13) WILD-TYPE      3      3      2      5      1      3
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 12(13Q12.13) MUTATED        5      8      3
  AMP PEAK 12(13Q12.13) WILD-TYPE      4      0      0
D12V2, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                             3                               3
  CLUS_2                             7                               3
  CLUS_3                             5                               2
  CLUS_4                             4                               5
  CLUS_5                             8                               1
  CLUS_6                             5                               3
  CLUS_7                             5                               4
  CLUS_8                             8                               0
  CLUS_9                             3                               0
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(13Q12.13) MUTATED       20     35     27     30     14
  AMP PEAK 12(13Q12.13) WILD-TYPE      6      5      0     12     16
D12V3, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            20                               6
  CLUS_2                            35                               5
  CLUS_3                            27                               0
  CLUS_4                            30                              12
  CLUS_5                            14                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(13Q12.13) MUTATED        9     18     17     20     14
  AMP PEAK 12(13Q12.13) WILD-TYPE      5      5      0      5      3
D12V4, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                             9                               5
  CLUS_2                            18                               5
  CLUS_3                            17                               0
  CLUS_4                            20                               5
  CLUS_5                            14                               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(13Q12.13) MUTATED       35     21     17     20      2
  AMP PEAK 12(13Q12.13) WILD-TYPE      7      6      8     10      1
D12V5, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            35                               7
  CLUS_2                            21                               6
  CLUS_3                            17                               8
  CLUS_4                            20                              10
  CLUS_5                             2                               1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(13Q12.13) MUTATED       14     14     18     14     19     16
  AMP PEAK 12(13Q12.13) WILD-TYPE      6      6      6      4     10      0
D12V6, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            14                               6
  CLUS_2                            14                               6
  CLUS_3                            18                               6
  CLUS_4                            14                               4
  CLUS_5                            19                              10
  CLUS_6                            16                               0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(13Q12.13) MUTATED       26     12     20     27     40
  AMP PEAK 12(13Q12.13) WILD-TYPE      6      2     13      1     17
D12V7, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            26                               6
  CLUS_2                            12                               2
  CLUS_3                            20                              13
  CLUS_4                            27                               1
  CLUS_5                            40                              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(13Q12.13) MUTATED       26     29      7     18     26      5
  AMP PEAK 12(13Q12.13) WILD-TYPE      1      7      5      1      6     13
                                 vv
clus                              CLUS_7
  AMP PEAK 12(13Q12.13) MUTATED       14
  AMP PEAK 12(13Q12.13) WILD-TYPE      6
D12V8, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            26                               1
  CLUS_2                            29                               7
  CLUS_3                             7                               5
  CLUS_4                            18                               1
  CLUS_5                            26                               6
  CLUS_6                             5                              13
  CLUS_7                            14                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.13) MUTATED       19     51     39
  AMP PEAK 12(13Q12.13) WILD-TYPE      5      4     23
D12V9, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            19                               5
  CLUS_2                            51                               4
  CLUS_3                            39                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.13) MUTATED       19     55     35
  AMP PEAK 12(13Q12.13) WILD-TYPE      3      8     21
D12V10, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            19                               3
  CLUS_2                            55                               8
  CLUS_3                            35                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(13Q12.13) MUTATED       15     12     11      6
  AMP PEAK 12(13Q12.13) WILD-TYPE      2      2      2      0
D12V11, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            15                               2
  CLUS_2                            12                               2
  CLUS_3                            11                               2
  CLUS_4                             6                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(13Q12.13) MUTATED       10     10     14      5      5
  AMP PEAK 12(13Q12.13) WILD-TYPE      1      2      2      1      0
D12V12, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            10                               1
  CLUS_2                            10                               2
  CLUS_3                            14                               2
  CLUS_4                             5                               1
  CLUS_5                             5                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(13Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(13Q12.2) MUTATED        8      7     16      7     11
  AMP PEAK 13(13Q12.2) WILD-TYPE      5      1      4      6      4
D13V1, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                            8                              5
  CLUS_2                            7                              1
  CLUS_3                           16                              4
  CLUS_4                            7                              6
  CLUS_5                           11                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(13Q12.2) MUTATED        3      7      5      5      8      5
  AMP PEAK 13(13Q12.2) WILD-TYPE      3      3      2      4      1      3
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 13(13Q12.2) MUTATED        5      8      3
  AMP PEAK 13(13Q12.2) WILD-TYPE      4      0      0
D13V2, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            7                              3
  CLUS_3                            5                              2
  CLUS_4                            5                              4
  CLUS_5                            8                              1
  CLUS_6                            5                              3
  CLUS_7                            5                              4
  CLUS_8                            8                              0
  CLUS_9                            3                              0
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(13Q12.2) MUTATED       18     35     27     31     14
  AMP PEAK 13(13Q12.2) WILD-TYPE      8      5      0     11     16
D13V3, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           18                              8
  CLUS_2                           35                              5
  CLUS_3                           27                              0
  CLUS_4                           31                             11
  CLUS_5                           14                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(13Q12.2) MUTATED        8     18     17     20     14
  AMP PEAK 13(13Q12.2) WILD-TYPE      6      5      0      5      3
D13V4, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                            8                              6
  CLUS_2                           18                              5
  CLUS_3                           17                              0
  CLUS_4                           20                              5
  CLUS_5                           14                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(13Q12.2) MUTATED       34     22     17     20      2
  AMP PEAK 13(13Q12.2) WILD-TYPE      8      5      8     10      1
D13V5, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           34                              8
  CLUS_2                           22                              5
  CLUS_3                           17                              8
  CLUS_4                           20                             10
  CLUS_5                            2                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(13Q12.2) MUTATED       14     15     18     14     18     16
  AMP PEAK 13(13Q12.2) WILD-TYPE      6      5      6      4     11      0
D13V6, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           14                              6
  CLUS_2                           15                              5
  CLUS_3                           18                              6
  CLUS_4                           14                              4
  CLUS_5                           18                             11
  CLUS_6                           16                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(13Q12.2) MUTATED       26     12     19     27     40
  AMP PEAK 13(13Q12.2) WILD-TYPE      6      2     14      1     17
D13V7, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           26                              6
  CLUS_2                           12                              2
  CLUS_3                           19                             14
  CLUS_4                           27                              1
  CLUS_5                           40                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(13Q12.2) MUTATED       26     28      7     17     26      6
  AMP PEAK 13(13Q12.2) WILD-TYPE      1      8      5      2      6     12
                                vv
clus                             CLUS_7
  AMP PEAK 13(13Q12.2) MUTATED       14
  AMP PEAK 13(13Q12.2) WILD-TYPE      6
D13V8, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           26                              1
  CLUS_2                           28                              8
  CLUS_3                            7                              5
  CLUS_4                           17                              2
  CLUS_5                           26                              6
  CLUS_6                            6                             12
  CLUS_7                           14                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q12.2) MUTATED       19     49     40
  AMP PEAK 13(13Q12.2) WILD-TYPE      5      6     22
D13V9, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           19                              5
  CLUS_2                           49                              6
  CLUS_3                           40                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q12.2) MUTATED       19     53     36
  AMP PEAK 13(13Q12.2) WILD-TYPE      3     10     20
D13V10, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           19                              3
  CLUS_2                           53                             10
  CLUS_3                           36                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q12.2) MUTATED       15     12     11      5
  AMP PEAK 13(13Q12.2) WILD-TYPE      2      2      2      1
D13V11, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           15                              2
  CLUS_2                           12                              2
  CLUS_3                           11                              2
  CLUS_4                            5                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(13Q12.2) MUTATED        9     10     14      5      5
  AMP PEAK 13(13Q12.2) WILD-TYPE      2      2      2      1      0
D13V12, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                            9                              2
  CLUS_2                           10                              2
  CLUS_3                           14                              2
  CLUS_4                            5                              1
  CLUS_5                            5                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(13Q22.1) MUTATED        6      6     16      7     11
  AMP PEAK 14(13Q22.1) WILD-TYPE      7      2      4      6      4
D14V1, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                            6                              7
  CLUS_2                            6                              2
  CLUS_3                           16                              4
  CLUS_4                            7                              6
  CLUS_5                           11                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(13Q22.1) MUTATED        3      7      5      3      8      5
  AMP PEAK 14(13Q22.1) WILD-TYPE      3      3      2      6      1      3
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 14(13Q22.1) MUTATED        4      8      3
  AMP PEAK 14(13Q22.1) WILD-TYPE      5      0      0
D14V2, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            7                              3
  CLUS_3                            5                              2
  CLUS_4                            3                              6
  CLUS_5                            8                              1
  CLUS_6                            5                              3
  CLUS_7                            4                              5
  CLUS_8                            8                              0
  CLUS_9                            3                              0
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(13Q22.1) MUTATED       18     34     27     29     12
  AMP PEAK 14(13Q22.1) WILD-TYPE      8      6      0     13     18
D14V3, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           18                              8
  CLUS_2                           34                              6
  CLUS_3                           27                              0
  CLUS_4                           29                             13
  CLUS_5                           12                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(13Q22.1) MUTATED        8     18     16     18     15
  AMP PEAK 14(13Q22.1) WILD-TYPE      6      5      1      7      2
D14V4, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                            8                              6
  CLUS_2                           18                              5
  CLUS_3                           16                              1
  CLUS_4                           18                              7
  CLUS_5                           15                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(13Q22.1) MUTATED       32     20     16     22      1
  AMP PEAK 14(13Q22.1) WILD-TYPE     10      7      9      8      2
D14V5, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           32                             10
  CLUS_2                           20                              7
  CLUS_3                           16                              9
  CLUS_4                           22                              8
  CLUS_5                            1                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(13Q22.1) MUTATED       13     14     17     14     18     15
  AMP PEAK 14(13Q22.1) WILD-TYPE      7      6      7      4     11      1
D14V6, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           13                              7
  CLUS_2                           14                              6
  CLUS_3                           17                              7
  CLUS_4                           14                              4
  CLUS_5                           18                             11
  CLUS_6                           15                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(13Q22.1) MUTATED       23     11     18     27     40
  AMP PEAK 14(13Q22.1) WILD-TYPE      9      3     15      1     17
D14V7, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           23                              9
  CLUS_2                           11                              3
  CLUS_3                           18                             15
  CLUS_4                           27                              1
  CLUS_5                           40                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(13Q22.1) MUTATED       23     26      8     17     28      4
  AMP PEAK 14(13Q22.1) WILD-TYPE      4     10      4      2      4     14
                                vv
clus                             CLUS_7
  AMP PEAK 14(13Q22.1) MUTATED       13
  AMP PEAK 14(13Q22.1) WILD-TYPE      7
D14V8, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           23                              4
  CLUS_2                           26                             10
  CLUS_3                            8                              4
  CLUS_4                           17                              2
  CLUS_5                           28                              4
  CLUS_6                            4                             14
  CLUS_7                           13                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q22.1) MUTATED       20     46     39
  AMP PEAK 14(13Q22.1) WILD-TYPE      4      9     23
D14V9, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           20                              4
  CLUS_2                           46                              9
  CLUS_3                           39                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q22.1) MUTATED       18     53     34
  AMP PEAK 14(13Q22.1) WILD-TYPE      4     10     22
D14V10, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           18                              4
  CLUS_2                           53                             10
  CLUS_3                           34                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q22.1) MUTATED       14     12     11      5
  AMP PEAK 14(13Q22.1) WILD-TYPE      3      2      2      1
D14V11, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           14                              3
  CLUS_2                           12                              2
  CLUS_3                           11                              2
  CLUS_4                            5                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(13Q22.1) MUTATED        8     10     14      5      5
  AMP PEAK 14(13Q22.1) WILD-TYPE      3      2      2      1      0
D14V12, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                            8                              3
  CLUS_2                           10                              2
  CLUS_3                           14                              2
  CLUS_4                            5                              1
  CLUS_5                            5                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(16P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(16P11.2) MUTATED        2      2      7      2      6
  AMP PEAK 15(16P11.2) WILD-TYPE     11      6     13     11      9
D15V1, multiclass
        clus
vv       AMP PEAK 15(16P11.2) MUTATED AMP PEAK 15(16P11.2) WILD-TYPE
  CLUS_1                            2                             11
  CLUS_2                            2                              6
  CLUS_3                            7                             13
  CLUS_4                            2                             11
  CLUS_5                            6                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(16P11.2) MUTATED        2      4      1      1      3      3
  AMP PEAK 15(16P11.2) WILD-TYPE      4      6      6      8      6      5
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 15(16P11.2) MUTATED        1      4      0
  AMP PEAK 15(16P11.2) WILD-TYPE      8      4      3
D15V2, multiclass
        clus
vv       AMP PEAK 15(16P11.2) MUTATED AMP PEAK 15(16P11.2) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            4                              6
  CLUS_3                            1                              6
  CLUS_4                            1                              8
  CLUS_5                            3                              6
  CLUS_6                            3                              5
  CLUS_7                            1                              8
  CLUS_8                            4                              4
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(16P11.2) MUTATED        4     20     13      9      1
  AMP PEAK 15(16P11.2) WILD-TYPE     22     20     14     33     29
D15V3, multiclass
        clus
vv       AMP PEAK 15(16P11.2) MUTATED AMP PEAK 15(16P11.2) WILD-TYPE
  CLUS_1                            4                             22
  CLUS_2                           20                             20
  CLUS_3                           13                             14
  CLUS_4                            9                             33
  CLUS_5                            1                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(16P11.2) MUTATED        1      5     11      7      4
  AMP PEAK 15(16P11.2) WILD-TYPE     13     18      6     18     13
D15V4, multiclass
        clus
vv       AMP PEAK 15(16P11.2) MUTATED AMP PEAK 15(16P11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            5                             18
  CLUS_3                           11                              6
  CLUS_4                            7                             18
  CLUS_5                            4                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(16P11.2) MUTATED       11      8      9      5      0
  AMP PEAK 15(16P11.2) WILD-TYPE     31     19     16     25      3
D15V5, multiclass
        clus
vv       AMP PEAK 15(16P11.2) MUTATED AMP PEAK 15(16P11.2) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                            8                             19
  CLUS_3                            9                             16
  CLUS_4                            5                             25
  CLUS_5                            0                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(16P11.2) MUTATED        7      7      4      5      4      6
  AMP PEAK 15(16P11.2) WILD-TYPE     13     13     20     13     25     10
D15V6, multiclass
        clus
vv       AMP PEAK 15(16P11.2) MUTATED AMP PEAK 15(16P11.2) WILD-TYPE
  CLUS_1                            7                             13
  CLUS_2                            7                             13
  CLUS_3                            4                             20
  CLUS_4                            5                             13
  CLUS_5                            4                             25
  CLUS_6                            6                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(16P11.2) MUTATED       13      2      4     11     16
  AMP PEAK 15(16P11.2) WILD-TYPE     19     12     29     17     41
D15V7, multiclass
        clus
vv       AMP PEAK 15(16P11.2) MUTATED AMP PEAK 15(16P11.2) WILD-TYPE
  CLUS_1                           13                             19
  CLUS_2                            2                             12
  CLUS_3                            4                             29
  CLUS_4                           11                             17
  CLUS_5                           16                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(16P11.2) MUTATED        7      7      5      9     11      2
  AMP PEAK 15(16P11.2) WILD-TYPE     20     29      7     10     21     16
                                vv
clus                             CLUS_7
  AMP PEAK 15(16P11.2) MUTATED        5
  AMP PEAK 15(16P11.2) WILD-TYPE     15
D15V8, multiclass
        clus
vv       AMP PEAK 15(16P11.2) MUTATED AMP PEAK 15(16P11.2) WILD-TYPE
  CLUS_1                            7                             20
  CLUS_2                            7                             29
  CLUS_3                            5                              7
  CLUS_4                            9                             10
  CLUS_5                           11                             21
  CLUS_6                            2                             16
  CLUS_7                            5                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(16P11.2) MUTATED       10     17     14
  AMP PEAK 15(16P11.2) WILD-TYPE     14     38     48
D15V9, multiclass
        clus
vv       AMP PEAK 15(16P11.2) MUTATED AMP PEAK 15(16P11.2) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                           17                             38
  CLUS_3                           14                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(16P11.2) MUTATED        6     20     15
  AMP PEAK 15(16P11.2) WILD-TYPE     16     43     41
D15V10, multiclass
        clus
vv       AMP PEAK 15(16P11.2) MUTATED AMP PEAK 15(16P11.2) WILD-TYPE
  CLUS_1                            6                             16
  CLUS_2                           20                             43
  CLUS_3                           15                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(16P11.2) MUTATED        8      3      3      1
  AMP PEAK 15(16P11.2) WILD-TYPE      9     11     10      5
D15V11, multiclass
        clus
vv       AMP PEAK 15(16P11.2) MUTATED AMP PEAK 15(16P11.2) WILD-TYPE
  CLUS_1                            8                              9
  CLUS_2                            3                             11
  CLUS_3                            3                             10
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(16P11.2) MUTATED        3      4      5      1      2
  AMP PEAK 15(16P11.2) WILD-TYPE      8      8     11      5      3
D15V12, multiclass
        clus
vv       AMP PEAK 15(16P11.2) MUTATED AMP PEAK 15(16P11.2) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                            4                              8
  CLUS_3                            5                             11
  CLUS_4                            1                              5
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(17Q12) MUTATED        2      3      4      6      6
  AMP PEAK 16(17Q12) WILD-TYPE     11      5     16      7      9
D16V1, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                          2                           11
  CLUS_2                          3                            5
  CLUS_3                          4                           16
  CLUS_4                          6                            7
  CLUS_5                          6                            9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 16(17Q12) MUTATED        1      4      0      2      4      1      2
  AMP PEAK 16(17Q12) WILD-TYPE      5      6      7      7      5      7      7
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 16(17Q12) MUTATED        6      1
  AMP PEAK 16(17Q12) WILD-TYPE      2      2
D16V2, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                          1                            5
  CLUS_2                          4                            6
  CLUS_3                          0                            7
  CLUS_4                          2                            7
  CLUS_5                          4                            5
  CLUS_6                          1                            7
  CLUS_7                          2                            7
  CLUS_8                          6                            2
  CLUS_9                          1                            2
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(17Q12) MUTATED        5     21      4     10      6
  AMP PEAK 16(17Q12) WILD-TYPE     21     19     23     32     24
D16V3, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                          5                           21
  CLUS_2                         21                           19
  CLUS_3                          4                           23
  CLUS_4                         10                           32
  CLUS_5                          6                           24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(17Q12) MUTATED        5      4      7      4      5
  AMP PEAK 16(17Q12) WILD-TYPE      9     19     10     21     12
D16V4, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                          5                            9
  CLUS_2                          4                           19
  CLUS_3                          7                           10
  CLUS_4                          4                           21
  CLUS_5                          5                           12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(17Q12) MUTATED        8      9     10      9      0
  AMP PEAK 16(17Q12) WILD-TYPE     34     18     15     21      3
D16V5, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                          8                           34
  CLUS_2                          9                           18
  CLUS_3                         10                           15
  CLUS_4                          9                           21
  CLUS_5                          0                            3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(17Q12) MUTATED        8      5      6      9      3      5
  AMP PEAK 16(17Q12) WILD-TYPE     12     15     18      9     26     11
D16V6, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                          8                           12
  CLUS_2                          5                           15
  CLUS_3                          6                           18
  CLUS_4                          9                            9
  CLUS_5                          3                           26
  CLUS_6                          5                           11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(17Q12) MUTATED        7      4      6     10     19
  AMP PEAK 16(17Q12) WILD-TYPE     25     10     27     18     38
D16V7, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                          7                           25
  CLUS_2                          4                           10
  CLUS_3                          6                           27
  CLUS_4                         10                           18
  CLUS_5                         19                           38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 16(17Q12) MUTATED        9      6      2      8     14      2      5
  AMP PEAK 16(17Q12) WILD-TYPE     18     30     10     11     18     16     15
D16V8, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                          9                           18
  CLUS_2                          6                           30
  CLUS_3                          2                           10
  CLUS_4                          8                           11
  CLUS_5                         14                           18
  CLUS_6                          2                           16
  CLUS_7                          5                           15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q12) MUTATED        5     13     19
  AMP PEAK 16(17Q12) WILD-TYPE     19     42     43
D16V9, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                          5                           19
  CLUS_2                         13                           42
  CLUS_3                         19                           43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q12) MUTATED        7     14     16
  AMP PEAK 16(17Q12) WILD-TYPE     15     49     40
D16V10, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                          7                           15
  CLUS_2                         14                           49
  CLUS_3                         16                           40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(17Q12) MUTATED        2      6      3      0
  AMP PEAK 16(17Q12) WILD-TYPE     15      8     10      6
D16V11, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                          2                           15
  CLUS_2                          6                            8
  CLUS_3                          3                           10
  CLUS_4                          0                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(17Q12) MUTATED        3      2      4      0      2
  AMP PEAK 16(17Q12) WILD-TYPE      8     10     12      6      3
D16V12, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                          3                            8
  CLUS_2                          2                           10
  CLUS_3                          4                           12
  CLUS_4                          0                            6
  CLUS_5                          2                            3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(17Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(17Q24.1) MUTATED        2      2      5      5      5
  AMP PEAK 17(17Q24.1) WILD-TYPE     11      6     15      8     10
D17V1, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                            2                             11
  CLUS_2                            2                              6
  CLUS_3                            5                             15
  CLUS_4                            5                              8
  CLUS_5                            5                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(17Q24.1) MUTATED        2      3      1      1      3      1
  AMP PEAK 17(17Q24.1) WILD-TYPE      4      7      6      8      6      7
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 17(17Q24.1) MUTATED        3      4      1
  AMP PEAK 17(17Q24.1) WILD-TYPE      6      4      2
D17V2, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            3                              7
  CLUS_3                            1                              6
  CLUS_4                            1                              8
  CLUS_5                            3                              6
  CLUS_6                            1                              7
  CLUS_7                            3                              6
  CLUS_8                            4                              4
  CLUS_9                            1                              2
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(17Q24.1) MUTATED        6     19      1      7      6
  AMP PEAK 17(17Q24.1) WILD-TYPE     20     21     26     35     24
D17V3, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                            6                             20
  CLUS_2                           19                             21
  CLUS_3                            1                             26
  CLUS_4                            7                             35
  CLUS_5                            6                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(17Q24.1) MUTATED        3      2      8      5      2
  AMP PEAK 17(17Q24.1) WILD-TYPE     11     21      9     20     15
D17V4, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            2                             21
  CLUS_3                            8                              9
  CLUS_4                            5                             20
  CLUS_5                            2                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(17Q24.1) MUTATED       12      8      7      5      0
  AMP PEAK 17(17Q24.1) WILD-TYPE     30     19     18     25      3
D17V5, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                           12                             30
  CLUS_2                            8                             19
  CLUS_3                            7                             18
  CLUS_4                            5                             25
  CLUS_5                            0                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(17Q24.1) MUTATED        8      5      4      5      4      6
  AMP PEAK 17(17Q24.1) WILD-TYPE     12     15     20     13     25     10
D17V6, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                            8                             12
  CLUS_2                            5                             15
  CLUS_3                            4                             20
  CLUS_4                            5                             13
  CLUS_5                            4                             25
  CLUS_6                            6                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(17Q24.1) MUTATED        6      3      4      9     16
  AMP PEAK 17(17Q24.1) WILD-TYPE     26     11     29     19     41
D17V7, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                            6                             26
  CLUS_2                            3                             11
  CLUS_3                            4                             29
  CLUS_4                            9                             19
  CLUS_5                           16                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(17Q24.1) MUTATED        9      4      1      6     11      2
  AMP PEAK 17(17Q24.1) WILD-TYPE     18     32     11     13     21     16
                                vv
clus                             CLUS_7
  AMP PEAK 17(17Q24.1) MUTATED        5
  AMP PEAK 17(17Q24.1) WILD-TYPE     15
D17V8, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                            9                             18
  CLUS_2                            4                             32
  CLUS_3                            1                             11
  CLUS_4                            6                             13
  CLUS_5                           11                             21
  CLUS_6                            2                             16
  CLUS_7                            5                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q24.1) MUTATED        4     11     16
  AMP PEAK 17(17Q24.1) WILD-TYPE     20     44     46
D17V9, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                           11                             44
  CLUS_3                           16                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q24.1) MUTATED        7     10     14
  AMP PEAK 17(17Q24.1) WILD-TYPE     15     53     42
D17V10, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                            7                             15
  CLUS_2                           10                             53
  CLUS_3                           14                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q24.1) MUTATED        3      5      2      0
  AMP PEAK 17(17Q24.1) WILD-TYPE     14      9     11      6
D17V11, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                            3                             14
  CLUS_2                            5                              9
  CLUS_3                            2                             11
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(17Q24.1) MUTATED        3      3      3      0      1
  AMP PEAK 17(17Q24.1) WILD-TYPE      8      9     13      6      4
D17V12, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                            3                              9
  CLUS_3                            3                             13
  CLUS_4                            0                              6
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(20Q11.21) MUTATED        9      7     18     10     15
  AMP PEAK 18(20Q11.21) WILD-TYPE      4      1      2      3      0
D18V1, multiclass
        clus
vv       AMP PEAK 18(20Q11.21) MUTATED AMP PEAK 18(20Q11.21) WILD-TYPE
  CLUS_1                             9                               4
  CLUS_2                             7                               1
  CLUS_3                            18                               2
  CLUS_4                            10                               3
  CLUS_5                            15                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(20Q11.21) MUTATED        6      8      6      5      9      7
  AMP PEAK 18(20Q11.21) WILD-TYPE      0      2      1      4      0      1
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 18(20Q11.21) MUTATED        8      8      2
  AMP PEAK 18(20Q11.21) WILD-TYPE      1      0      1
D18V2, multiclass
        clus
vv       AMP PEAK 18(20Q11.21) MUTATED AMP PEAK 18(20Q11.21) WILD-TYPE
  CLUS_1                             6                               0
  CLUS_2                             8                               2
  CLUS_3                             6                               1
  CLUS_4                             5                               4
  CLUS_5                             9                               0
  CLUS_6                             7                               1
  CLUS_7                             8                               1
  CLUS_8                             8                               0
  CLUS_9                             2                               1
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(20Q11.21) MUTATED       23     40     27     36     20
  AMP PEAK 18(20Q11.21) WILD-TYPE      3      0      0      6     10
D18V3, multiclass
        clus
vv       AMP PEAK 18(20Q11.21) MUTATED AMP PEAK 18(20Q11.21) WILD-TYPE
  CLUS_1                            23                               3
  CLUS_2                            40                               0
  CLUS_3                            27                               0
  CLUS_4                            36                               6
  CLUS_5                            20                              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(20Q11.21) MUTATED        9     22     17     22     17
  AMP PEAK 18(20Q11.21) WILD-TYPE      5      1      0      3      0
D18V4, multiclass
        clus
vv       AMP PEAK 18(20Q11.21) MUTATED AMP PEAK 18(20Q11.21) WILD-TYPE
  CLUS_1                             9                               5
  CLUS_2                            22                               1
  CLUS_3                            17                               0
  CLUS_4                            22                               3
  CLUS_5                            17                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(20Q11.21) MUTATED       41     26     19     26      3
  AMP PEAK 18(20Q11.21) WILD-TYPE      1      1      6      4      0
D18V5, multiclass
        clus
vv       AMP PEAK 18(20Q11.21) MUTATED AMP PEAK 18(20Q11.21) WILD-TYPE
  CLUS_1                            41                               1
  CLUS_2                            26                               1
  CLUS_3                            19                               6
  CLUS_4                            26                               4
  CLUS_5                             3                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(20Q11.21) MUTATED       18     20     20     15     26     16
  AMP PEAK 18(20Q11.21) WILD-TYPE      2      0      4      3      3      0
D18V6, multiclass
        clus
vv       AMP PEAK 18(20Q11.21) MUTATED AMP PEAK 18(20Q11.21) WILD-TYPE
  CLUS_1                            18                               2
  CLUS_2                            20                               0
  CLUS_3                            20                               4
  CLUS_4                            15                               3
  CLUS_5                            26                               3
  CLUS_6                            16                               0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(20Q11.21) MUTATED       28     13     27     28     49
  AMP PEAK 18(20Q11.21) WILD-TYPE      4      1      6      0      8
D18V7, multiclass
        clus
vv       AMP PEAK 18(20Q11.21) MUTATED AMP PEAK 18(20Q11.21) WILD-TYPE
  CLUS_1                            28                               4
  CLUS_2                            13                               1
  CLUS_3                            27                               6
  CLUS_4                            28                               0
  CLUS_5                            49                               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(20Q11.21) MUTATED       26     32      9     19     31     10
  AMP PEAK 18(20Q11.21) WILD-TYPE      1      4      3      0      1      8
                                 vv
clus                              CLUS_7
  AMP PEAK 18(20Q11.21) MUTATED       18
  AMP PEAK 18(20Q11.21) WILD-TYPE      2
D18V8, multiclass
        clus
vv       AMP PEAK 18(20Q11.21) MUTATED AMP PEAK 18(20Q11.21) WILD-TYPE
  CLUS_1                            26                               1
  CLUS_2                            32                               4
  CLUS_3                             9                               3
  CLUS_4                            19                               0
  CLUS_5                            31                               1
  CLUS_6                            10                               8
  CLUS_7                            18                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(20Q11.21) MUTATED       22     51     52
  AMP PEAK 18(20Q11.21) WILD-TYPE      2      4     10
D18V9, multiclass
        clus
vv       AMP PEAK 18(20Q11.21) MUTATED AMP PEAK 18(20Q11.21) WILD-TYPE
  CLUS_1                            22                               2
  CLUS_2                            51                               4
  CLUS_3                            52                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(20Q11.21) MUTATED       20     58     47
  AMP PEAK 18(20Q11.21) WILD-TYPE      2      5      9
D18V10, multiclass
        clus
vv       AMP PEAK 18(20Q11.21) MUTATED AMP PEAK 18(20Q11.21) WILD-TYPE
  CLUS_1                            20                               2
  CLUS_2                            58                               5
  CLUS_3                            47                               9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(20Q11.21) MUTATED       16     14     11      5
  AMP PEAK 18(20Q11.21) WILD-TYPE      1      0      2      1
D18V11, multiclass
        clus
vv       AMP PEAK 18(20Q11.21) MUTATED AMP PEAK 18(20Q11.21) WILD-TYPE
  CLUS_1                            16                               1
  CLUS_2                            14                               0
  CLUS_3                            11                               2
  CLUS_4                             5                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(20Q11.21) MUTATED        9     12     15      5      5
  AMP PEAK 18(20Q11.21) WILD-TYPE      2      0      1      1      0
D18V12, multiclass
        clus
vv       AMP PEAK 18(20Q11.21) MUTATED AMP PEAK 18(20Q11.21) WILD-TYPE
  CLUS_1                             9                               2
  CLUS_2                            12                               0
  CLUS_3                            15                               1
  CLUS_4                             5                               1
  CLUS_5                             5                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(20Q11.23) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(20Q11.23) MUTATED        9      7     18     10     15
  AMP PEAK 19(20Q11.23) WILD-TYPE      4      1      2      3      0
D19V1, multiclass
        clus
vv       AMP PEAK 19(20Q11.23) MUTATED AMP PEAK 19(20Q11.23) WILD-TYPE
  CLUS_1                             9                               4
  CLUS_2                             7                               1
  CLUS_3                            18                               2
  CLUS_4                            10                               3
  CLUS_5                            15                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(20Q11.23) MUTATED        6      8      6      5      9      7
  AMP PEAK 19(20Q11.23) WILD-TYPE      0      2      1      4      0      1
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 19(20Q11.23) MUTATED        8      8      2
  AMP PEAK 19(20Q11.23) WILD-TYPE      1      0      1
D19V2, multiclass
        clus
vv       AMP PEAK 19(20Q11.23) MUTATED AMP PEAK 19(20Q11.23) WILD-TYPE
  CLUS_1                             6                               0
  CLUS_2                             8                               2
  CLUS_3                             6                               1
  CLUS_4                             5                               4
  CLUS_5                             9                               0
  CLUS_6                             7                               1
  CLUS_7                             8                               1
  CLUS_8                             8                               0
  CLUS_9                             2                               1
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(20Q11.23) MUTATED       24     40     27     36     20
  AMP PEAK 19(20Q11.23) WILD-TYPE      2      0      0      6     10
D19V3, multiclass
        clus
vv       AMP PEAK 19(20Q11.23) MUTATED AMP PEAK 19(20Q11.23) WILD-TYPE
  CLUS_1                            24                               2
  CLUS_2                            40                               0
  CLUS_3                            27                               0
  CLUS_4                            36                               6
  CLUS_5                            20                              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(20Q11.23) MUTATED       10     22     17     22     17
  AMP PEAK 19(20Q11.23) WILD-TYPE      4      1      0      3      0
D19V4, multiclass
        clus
vv       AMP PEAK 19(20Q11.23) MUTATED AMP PEAK 19(20Q11.23) WILD-TYPE
  CLUS_1                            10                               4
  CLUS_2                            22                               1
  CLUS_3                            17                               0
  CLUS_4                            22                               3
  CLUS_5                            17                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(20Q11.23) MUTATED       41     26     19     26      3
  AMP PEAK 19(20Q11.23) WILD-TYPE      1      1      6      4      0
D19V5, multiclass
        clus
vv       AMP PEAK 19(20Q11.23) MUTATED AMP PEAK 19(20Q11.23) WILD-TYPE
  CLUS_1                            41                               1
  CLUS_2                            26                               1
  CLUS_3                            19                               6
  CLUS_4                            26                               4
  CLUS_5                             3                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(20Q11.23) MUTATED       18     20     20     15     26     16
  AMP PEAK 19(20Q11.23) WILD-TYPE      2      0      4      3      3      0
D19V6, multiclass
        clus
vv       AMP PEAK 19(20Q11.23) MUTATED AMP PEAK 19(20Q11.23) WILD-TYPE
  CLUS_1                            18                               2
  CLUS_2                            20                               0
  CLUS_3                            20                               4
  CLUS_4                            15                               3
  CLUS_5                            26                               3
  CLUS_6                            16                               0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(20Q11.23) MUTATED       28     13     28     28     49
  AMP PEAK 19(20Q11.23) WILD-TYPE      4      1      5      0      8
D19V7, multiclass
        clus
vv       AMP PEAK 19(20Q11.23) MUTATED AMP PEAK 19(20Q11.23) WILD-TYPE
  CLUS_1                            28                               4
  CLUS_2                            13                               1
  CLUS_3                            28                               5
  CLUS_4                            28                               0
  CLUS_5                            49                               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(20Q11.23) MUTATED       26     33      9     19     31     10
  AMP PEAK 19(20Q11.23) WILD-TYPE      1      3      3      0      1      8
                                 vv
clus                              CLUS_7
  AMP PEAK 19(20Q11.23) MUTATED       18
  AMP PEAK 19(20Q11.23) WILD-TYPE      2
D19V8, multiclass
        clus
vv       AMP PEAK 19(20Q11.23) MUTATED AMP PEAK 19(20Q11.23) WILD-TYPE
  CLUS_1                            26                               1
  CLUS_2                            33                               3
  CLUS_3                             9                               3
  CLUS_4                            19                               0
  CLUS_5                            31                               1
  CLUS_6                            10                               8
  CLUS_7                            18                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q11.23) MUTATED       22     52     52
  AMP PEAK 19(20Q11.23) WILD-TYPE      2      3     10
D19V9, multiclass
        clus
vv       AMP PEAK 19(20Q11.23) MUTATED AMP PEAK 19(20Q11.23) WILD-TYPE
  CLUS_1                            22                               2
  CLUS_2                            52                               3
  CLUS_3                            52                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q11.23) MUTATED       20     59     47
  AMP PEAK 19(20Q11.23) WILD-TYPE      2      4      9
D19V10, multiclass
        clus
vv       AMP PEAK 19(20Q11.23) MUTATED AMP PEAK 19(20Q11.23) WILD-TYPE
  CLUS_1                            20                               2
  CLUS_2                            59                               4
  CLUS_3                            47                               9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(20Q11.23) MUTATED       16     14     11      6
  AMP PEAK 19(20Q11.23) WILD-TYPE      1      0      2      0
D19V11, multiclass
        clus
vv       AMP PEAK 19(20Q11.23) MUTATED AMP PEAK 19(20Q11.23) WILD-TYPE
  CLUS_1                            16                               1
  CLUS_2                            14                               0
  CLUS_3                            11                               2
  CLUS_4                             6                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(20Q11.23) MUTATED       10     12     15      5      5
  AMP PEAK 19(20Q11.23) WILD-TYPE      1      0      1      1      0
D19V12, multiclass
        clus
vv       AMP PEAK 19(20Q11.23) MUTATED AMP PEAK 19(20Q11.23) WILD-TYPE
  CLUS_1                            10                               1
  CLUS_2                            12                               0
  CLUS_3                            15                               1
  CLUS_4                             5                               1
  CLUS_5                             5                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(20Q13.33) MUTATED        9      7     19     10     14
  AMP PEAK 20(20Q13.33) WILD-TYPE      4      1      1      3      1
D20V1, multiclass
        clus
vv       AMP PEAK 20(20Q13.33) MUTATED AMP PEAK 20(20Q13.33) WILD-TYPE
  CLUS_1                             9                               4
  CLUS_2                             7                               1
  CLUS_3                            19                               1
  CLUS_4                            10                               3
  CLUS_5                            14                               1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(20Q13.33) MUTATED        6      8      7      5      8      7
  AMP PEAK 20(20Q13.33) WILD-TYPE      0      2      0      4      1      1
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 20(20Q13.33) MUTATED        8      8      2
  AMP PEAK 20(20Q13.33) WILD-TYPE      1      0      1
D20V2, multiclass
        clus
vv       AMP PEAK 20(20Q13.33) MUTATED AMP PEAK 20(20Q13.33) WILD-TYPE
  CLUS_1                             6                               0
  CLUS_2                             8                               2
  CLUS_3                             7                               0
  CLUS_4                             5                               4
  CLUS_5                             8                               1
  CLUS_6                             7                               1
  CLUS_7                             8                               1
  CLUS_8                             8                               0
  CLUS_9                             2                               1
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(20Q13.33) MUTATED       25     39     27     35     20
  AMP PEAK 20(20Q13.33) WILD-TYPE      1      1      0      7     10
D20V3, multiclass
        clus
vv       AMP PEAK 20(20Q13.33) MUTATED AMP PEAK 20(20Q13.33) WILD-TYPE
  CLUS_1                            25                               1
  CLUS_2                            39                               1
  CLUS_3                            27                               0
  CLUS_4                            35                               7
  CLUS_5                            20                              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(20Q13.33) MUTATED       10     22     16     22     17
  AMP PEAK 20(20Q13.33) WILD-TYPE      4      1      1      3      0
D20V4, multiclass
        clus
vv       AMP PEAK 20(20Q13.33) MUTATED AMP PEAK 20(20Q13.33) WILD-TYPE
  CLUS_1                            10                               4
  CLUS_2                            22                               1
  CLUS_3                            16                               1
  CLUS_4                            22                               3
  CLUS_5                            17                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(20Q13.33) MUTATED       40     26     19     26      3
  AMP PEAK 20(20Q13.33) WILD-TYPE      2      1      6      4      0
D20V5, multiclass
        clus
vv       AMP PEAK 20(20Q13.33) MUTATED AMP PEAK 20(20Q13.33) WILD-TYPE
  CLUS_1                            40                               2
  CLUS_2                            26                               1
  CLUS_3                            19                               6
  CLUS_4                            26                               4
  CLUS_5                             3                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(20Q13.33) MUTATED       18     20     20     15     26     15
  AMP PEAK 20(20Q13.33) WILD-TYPE      2      0      4      3      3      1
D20V6, multiclass
        clus
vv       AMP PEAK 20(20Q13.33) MUTATED AMP PEAK 20(20Q13.33) WILD-TYPE
  CLUS_1                            18                               2
  CLUS_2                            20                               0
  CLUS_3                            20                               4
  CLUS_4                            15                               3
  CLUS_5                            26                               3
  CLUS_6                            15                               1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(20Q13.33) MUTATED       28     13     28     27     49
  AMP PEAK 20(20Q13.33) WILD-TYPE      4      1      5      1      8
D20V7, multiclass
        clus
vv       AMP PEAK 20(20Q13.33) MUTATED AMP PEAK 20(20Q13.33) WILD-TYPE
  CLUS_1                            28                               4
  CLUS_2                            13                               1
  CLUS_3                            28                               5
  CLUS_4                            27                               1
  CLUS_5                            49                               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(20Q13.33) MUTATED       26     33      9     18     31     10
  AMP PEAK 20(20Q13.33) WILD-TYPE      1      3      3      1      1      8
                                 vv
clus                              CLUS_7
  AMP PEAK 20(20Q13.33) MUTATED       18
  AMP PEAK 20(20Q13.33) WILD-TYPE      2
D20V8, multiclass
        clus
vv       AMP PEAK 20(20Q13.33) MUTATED AMP PEAK 20(20Q13.33) WILD-TYPE
  CLUS_1                            26                               1
  CLUS_2                            33                               3
  CLUS_3                             9                               3
  CLUS_4                            18                               1
  CLUS_5                            31                               1
  CLUS_6                            10                               8
  CLUS_7                            18                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(20Q13.33) MUTATED       22     51     52
  AMP PEAK 20(20Q13.33) WILD-TYPE      2      4     10
D20V9, multiclass
        clus
vv       AMP PEAK 20(20Q13.33) MUTATED AMP PEAK 20(20Q13.33) WILD-TYPE
  CLUS_1                            22                               2
  CLUS_2                            51                               4
  CLUS_3                            52                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(20Q13.33) MUTATED       20     58     47
  AMP PEAK 20(20Q13.33) WILD-TYPE      2      5      9
D20V10, multiclass
        clus
vv       AMP PEAK 20(20Q13.33) MUTATED AMP PEAK 20(20Q13.33) WILD-TYPE
  CLUS_1                            20                               2
  CLUS_2                            58                               5
  CLUS_3                            47                               9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(20Q13.33) MUTATED       16     14     10      6
  AMP PEAK 20(20Q13.33) WILD-TYPE      1      0      3      0
D20V11, multiclass
        clus
vv       AMP PEAK 20(20Q13.33) MUTATED AMP PEAK 20(20Q13.33) WILD-TYPE
  CLUS_1                            16                               1
  CLUS_2                            14                               0
  CLUS_3                            10                               3
  CLUS_4                             6                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(20Q13.33) MUTATED       10     12     14      5      5
  AMP PEAK 20(20Q13.33) WILD-TYPE      1      0      2      1      0
D20V12, multiclass
        clus
vv       AMP PEAK 20(20Q13.33) MUTATED AMP PEAK 20(20Q13.33) WILD-TYPE
  CLUS_1                            10                               1
  CLUS_2                            12                               0
  CLUS_3                            14                               2
  CLUS_4                             5                               1
  CLUS_5                             5                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(XP22.2) MUTATED        0      0      5      2      4
  AMP PEAK 21(XP22.2) WILD-TYPE     13      8     15     11     11
D21V1, multiclass
        clus
vv       AMP PEAK 21(XP22.2) MUTATED AMP PEAK 21(XP22.2) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           0                             8
  CLUS_3                           5                            15
  CLUS_4                           2                            11
  CLUS_5                           4                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(XP22.2) MUTATED        1      2      1      0      3      2
  AMP PEAK 21(XP22.2) WILD-TYPE      5      8      6      9      6      6
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 21(XP22.2) MUTATED        0      2      0
  AMP PEAK 21(XP22.2) WILD-TYPE      9      6      3
D21V2, multiclass
        clus
vv       AMP PEAK 21(XP22.2) MUTATED AMP PEAK 21(XP22.2) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           2                             8
  CLUS_3                           1                             6
  CLUS_4                           0                             9
  CLUS_5                           3                             6
  CLUS_6                           2                             6
  CLUS_7                           0                             9
  CLUS_8                           2                             6
  CLUS_9                           0                             3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(XP22.2) MUTATED        4     11      4      8      5
  AMP PEAK 21(XP22.2) WILD-TYPE     22     29     23     34     25
D21V3, multiclass
        clus
vv       AMP PEAK 21(XP22.2) MUTATED AMP PEAK 21(XP22.2) WILD-TYPE
  CLUS_1                           4                            22
  CLUS_2                          11                            29
  CLUS_3                           4                            23
  CLUS_4                           8                            34
  CLUS_5                           5                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(XP22.2) MUTATED        2      3      2      8      5
  AMP PEAK 21(XP22.2) WILD-TYPE     12     20     15     17     12
D21V4, multiclass
        clus
vv       AMP PEAK 21(XP22.2) MUTATED AMP PEAK 21(XP22.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           3                            20
  CLUS_3                           2                            15
  CLUS_4                           8                            17
  CLUS_5                           5                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(XP22.2) MUTATED       10      4      8      4      0
  AMP PEAK 21(XP22.2) WILD-TYPE     32     23     17     26      3
D21V5, multiclass
        clus
vv       AMP PEAK 21(XP22.2) MUTATED AMP PEAK 21(XP22.2) WILD-TYPE
  CLUS_1                          10                            32
  CLUS_2                           4                            23
  CLUS_3                           8                            17
  CLUS_4                           4                            26
  CLUS_5                           0                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(XP22.2) MUTATED        4      4      2      5      9      2
  AMP PEAK 21(XP22.2) WILD-TYPE     16     16     22     13     20     14
D21V6, multiclass
        clus
vv       AMP PEAK 21(XP22.2) MUTATED AMP PEAK 21(XP22.2) WILD-TYPE
  CLUS_1                           4                            16
  CLUS_2                           4                            16
  CLUS_3                           2                            22
  CLUS_4                           5                            13
  CLUS_5                           9                            20
  CLUS_6                           2                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(XP22.2) MUTATED        9      1      6      7      9
  AMP PEAK 21(XP22.2) WILD-TYPE     23     13     27     21     48
D21V7, multiclass
        clus
vv       AMP PEAK 21(XP22.2) MUTATED AMP PEAK 21(XP22.2) WILD-TYPE
  CLUS_1                           9                            23
  CLUS_2                           1                            13
  CLUS_3                           6                            27
  CLUS_4                           7                            21
  CLUS_5                           9                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(XP22.2) MUTATED        5      6      3      5      9      2
  AMP PEAK 21(XP22.2) WILD-TYPE     22     30      9     14     23     16
                               vv
clus                            CLUS_7
  AMP PEAK 21(XP22.2) MUTATED        2
  AMP PEAK 21(XP22.2) WILD-TYPE     18
D21V8, multiclass
        clus
vv       AMP PEAK 21(XP22.2) MUTATED AMP PEAK 21(XP22.2) WILD-TYPE
  CLUS_1                           5                            22
  CLUS_2                           6                            30
  CLUS_3                           3                             9
  CLUS_4                           5                            14
  CLUS_5                           9                            23
  CLUS_6                           2                            16
  CLUS_7                           2                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP22.2) MUTATED        4     11      9
  AMP PEAK 21(XP22.2) WILD-TYPE     20     44     53
D21V9, multiclass
        clus
vv       AMP PEAK 21(XP22.2) MUTATED AMP PEAK 21(XP22.2) WILD-TYPE
  CLUS_1                           4                            20
  CLUS_2                          11                            44
  CLUS_3                           9                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP22.2) MUTATED        3     12      9
  AMP PEAK 21(XP22.2) WILD-TYPE     19     51     47
D21V10, multiclass
        clus
vv       AMP PEAK 21(XP22.2) MUTATED AMP PEAK 21(XP22.2) WILD-TYPE
  CLUS_1                           3                            19
  CLUS_2                          12                            51
  CLUS_3                           9                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XP22.2) MUTATED        2      3      0      0
  AMP PEAK 21(XP22.2) WILD-TYPE     15     11     13      6
D21V11, multiclass
        clus
vv       AMP PEAK 21(XP22.2) MUTATED AMP PEAK 21(XP22.2) WILD-TYPE
  CLUS_1                           2                            15
  CLUS_2                           3                            11
  CLUS_3                           0                            13
  CLUS_4                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(XP22.2) MUTATED        1      1      3      0      0
  AMP PEAK 21(XP22.2) WILD-TYPE     10     11     13      6      5
D21V12, multiclass
        clus
vv       AMP PEAK 21(XP22.2) MUTATED AMP PEAK 21(XP22.2) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           1                            11
  CLUS_3                           3                            13
  CLUS_4                           0                             6
  CLUS_5                           0                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(XQ27.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(XQ27.3) MUTATED        4      1      6      3      6
  AMP PEAK 22(XQ27.3) WILD-TYPE      9      7     14     10      9
D22V1, multiclass
        clus
vv       AMP PEAK 22(XQ27.3) MUTATED AMP PEAK 22(XQ27.3) WILD-TYPE
  CLUS_1                           4                             9
  CLUS_2                           1                             7
  CLUS_3                           6                            14
  CLUS_4                           3                            10
  CLUS_5                           6                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(XQ27.3) MUTATED        1      4      2      4      3      3
  AMP PEAK 22(XQ27.3) WILD-TYPE      5      6      5      5      6      5
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 22(XQ27.3) MUTATED        0      3      0
  AMP PEAK 22(XQ27.3) WILD-TYPE      9      5      3
D22V2, multiclass
        clus
vv       AMP PEAK 22(XQ27.3) MUTATED AMP PEAK 22(XQ27.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           4                             6
  CLUS_3                           2                             5
  CLUS_4                           4                             5
  CLUS_5                           3                             6
  CLUS_6                           3                             5
  CLUS_7                           0                             9
  CLUS_8                           3                             5
  CLUS_9                           0                             3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(XQ27.3) MUTATED        5      9      9     12      2
  AMP PEAK 22(XQ27.3) WILD-TYPE     21     31     18     30     28
D22V3, multiclass
        clus
vv       AMP PEAK 22(XQ27.3) MUTATED AMP PEAK 22(XQ27.3) WILD-TYPE
  CLUS_1                           5                            21
  CLUS_2                           9                            31
  CLUS_3                           9                            18
  CLUS_4                          12                            30
  CLUS_5                           2                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(XQ27.3) MUTATED        1      3      6      1      5
  AMP PEAK 22(XQ27.3) WILD-TYPE     13     20     11     24     12
D22V4, multiclass
        clus
vv       AMP PEAK 22(XQ27.3) MUTATED AMP PEAK 22(XQ27.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           3                            20
  CLUS_3                           6                            11
  CLUS_4                           1                            24
  CLUS_5                           5                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(XQ27.3) MUTATED       10      5      9      2      1
  AMP PEAK 22(XQ27.3) WILD-TYPE     32     22     16     28      2
D22V5, multiclass
        clus
vv       AMP PEAK 22(XQ27.3) MUTATED AMP PEAK 22(XQ27.3) WILD-TYPE
  CLUS_1                          10                            32
  CLUS_2                           5                            22
  CLUS_3                           9                            16
  CLUS_4                           2                            28
  CLUS_5                           1                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(XQ27.3) MUTATED        6      5      3      4      4      5
  AMP PEAK 22(XQ27.3) WILD-TYPE     14     15     21     14     25     11
D22V6, multiclass
        clus
vv       AMP PEAK 22(XQ27.3) MUTATED AMP PEAK 22(XQ27.3) WILD-TYPE
  CLUS_1                           6                            14
  CLUS_2                           5                            15
  CLUS_3                           3                            21
  CLUS_4                           4                            14
  CLUS_5                           4                            25
  CLUS_6                           5                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(XQ27.3) MUTATED       11      1      3      5     17
  AMP PEAK 22(XQ27.3) WILD-TYPE     21     13     30     23     40
D22V7, multiclass
        clus
vv       AMP PEAK 22(XQ27.3) MUTATED AMP PEAK 22(XQ27.3) WILD-TYPE
  CLUS_1                          11                            21
  CLUS_2                           1                            13
  CLUS_3                           3                            30
  CLUS_4                           5                            23
  CLUS_5                          17                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(XQ27.3) MUTATED        7      4      2      4     12      5
  AMP PEAK 22(XQ27.3) WILD-TYPE     20     32     10     15     20     13
                               vv
clus                            CLUS_7
  AMP PEAK 22(XQ27.3) MUTATED        3
  AMP PEAK 22(XQ27.3) WILD-TYPE     17
D22V8, multiclass
        clus
vv       AMP PEAK 22(XQ27.3) MUTATED AMP PEAK 22(XQ27.3) WILD-TYPE
  CLUS_1                           7                            20
  CLUS_2                           4                            32
  CLUS_3                           2                            10
  CLUS_4                           4                            15
  CLUS_5                          12                            20
  CLUS_6                           5                            13
  CLUS_7                           3                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(XQ27.3) MUTATED        7      8     16
  AMP PEAK 22(XQ27.3) WILD-TYPE     17     47     46
D22V9, multiclass
        clus
vv       AMP PEAK 22(XQ27.3) MUTATED AMP PEAK 22(XQ27.3) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                           8                            47
  CLUS_3                          16                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(XQ27.3) MUTATED        6     10     15
  AMP PEAK 22(XQ27.3) WILD-TYPE     16     53     41
D22V10, multiclass
        clus
vv       AMP PEAK 22(XQ27.3) MUTATED AMP PEAK 22(XQ27.3) WILD-TYPE
  CLUS_1                           6                            16
  CLUS_2                          10                            53
  CLUS_3                          15                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(XQ27.3) MUTATED        5      0      1      1
  AMP PEAK 22(XQ27.3) WILD-TYPE     12     14     12      5
D22V11, multiclass
        clus
vv       AMP PEAK 22(XQ27.3) MUTATED AMP PEAK 22(XQ27.3) WILD-TYPE
  CLUS_1                           5                            12
  CLUS_2                           0                            14
  CLUS_3                           1                            12
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(XQ27.3) MUTATED        1      4      0      0      2
  AMP PEAK 22(XQ27.3) WILD-TYPE     10      8     16      6      3
D22V12, multiclass
        clus
vv       AMP PEAK 22(XQ27.3) MUTATED AMP PEAK 22(XQ27.3) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           4                             8
  CLUS_3                           0                            16
  CLUS_4                           0                             6
  CLUS_5                           2                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED        3      5     10      7      9
  DEL PEAK  1(1P36.11) WILD-TYPE     10      3     10      6      6
D23V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            3                             10
  CLUS_2                            5                              3
  CLUS_3                           10                             10
  CLUS_4                            7                              6
  CLUS_5                            9                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED        1      3      4      4      7      6
  DEL PEAK  1(1P36.11) WILD-TYPE      5      7      3      5      2      2
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  1(1P36.11) MUTATED        2      6      1
  DEL PEAK  1(1P36.11) WILD-TYPE      7      2      2
D23V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            3                              7
  CLUS_3                            4                              3
  CLUS_4                            4                              5
  CLUS_5                            7                              2
  CLUS_6                            6                              2
  CLUS_7                            2                              7
  CLUS_8                            6                              2
  CLUS_9                            1                              2
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       15     23     12     19      6
  DEL PEAK  1(1P36.11) WILD-TYPE     11     17     15     23     24
D23V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           15                             11
  CLUS_2                           23                             17
  CLUS_3                           12                             15
  CLUS_4                           19                             23
  CLUS_5                            6                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED        5     13      9      6      9
  DEL PEAK  1(1P36.11) WILD-TYPE      9     10      8     19      8
D23V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                           13                             10
  CLUS_3                            9                              8
  CLUS_4                            6                             19
  CLUS_5                            9                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       20     12      9     14      0
  DEL PEAK  1(1P36.11) WILD-TYPE     22     15     16     16      3
D23V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           20                             22
  CLUS_2                           12                             15
  CLUS_3                            9                             16
  CLUS_4                           14                             16
  CLUS_5                            0                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED        8      7     11     10     11      8
  DEL PEAK  1(1P36.11) WILD-TYPE     12     13     13      8     18      8
D23V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            8                             12
  CLUS_2                            7                             13
  CLUS_3                           11                             13
  CLUS_4                           10                              8
  CLUS_5                           11                             18
  CLUS_6                            8                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       15      7      9     14     30
  DEL PEAK  1(1P36.11) WILD-TYPE     17      7     24     14     27
D23V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           15                             17
  CLUS_2                            7                              7
  CLUS_3                            9                             24
  CLUS_4                           14                             14
  CLUS_5                           30                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       15     14      3      8     23      5
  DEL PEAK  1(1P36.11) WILD-TYPE     12     22      9     11      9     13
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.11) MUTATED        7
  DEL PEAK  1(1P36.11) WILD-TYPE     13
D23V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           15                             12
  CLUS_2                           14                             22
  CLUS_3                            3                              9
  CLUS_4                            8                             11
  CLUS_5                           23                              9
  CLUS_6                            5                             13
  CLUS_7                            7                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       12     23     29
  DEL PEAK  1(1P36.11) WILD-TYPE     12     32     33
D23V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                           23                             32
  CLUS_3                           29                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       15     25     24
  DEL PEAK  1(1P36.11) WILD-TYPE      7     38     32
D23V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           15                              7
  CLUS_2                           25                             38
  CLUS_3                           24                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED        8      7      4      3
  DEL PEAK  1(1P36.11) WILD-TYPE      9      7      9      3
D23V11, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            8                              9
  CLUS_2                            7                              7
  CLUS_3                            4                              9
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED        6      4      7      2      3
  DEL PEAK  1(1P36.11) WILD-TYPE      5      8      9      4      2
D23V12, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            6                              5
  CLUS_2                            4                              8
  CLUS_3                            7                              9
  CLUS_4                            2                              4
  CLUS_5                            3                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  2(1P33) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED        1      3      6      4      6
  DEL PEAK  2(1P33) WILD-TYPE     12      5     14      9      9
D24V1, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         1                          12
  CLUS_2                         3                           5
  CLUS_3                         6                          14
  CLUS_4                         4                           9
  CLUS_5                         6                           9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1P33) MUTATED        1      2      2      1      5      6      0
  DEL PEAK  2(1P33) WILD-TYPE      5      8      5      8      4      2      9
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK  2(1P33) MUTATED        3      0
  DEL PEAK  2(1P33) WILD-TYPE      5      3
D24V2, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         1                           5
  CLUS_2                         2                           8
  CLUS_3                         2                           5
  CLUS_4                         1                           8
  CLUS_5                         5                           4
  CLUS_6                         6                           2
  CLUS_7                         0                           9
  CLUS_8                         3                           5
  CLUS_9                         0                           3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED       10     20     11     11      1
  DEL PEAK  2(1P33) WILD-TYPE     16     20     16     31     29
D24V3, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        10                          16
  CLUS_2                        20                          20
  CLUS_3                        11                          16
  CLUS_4                        11                          31
  CLUS_5                         1                          29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED        3     11      6      5      9
  DEL PEAK  2(1P33) WILD-TYPE     11     12     11     20      8
D24V4, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         3                          11
  CLUS_2                        11                          12
  CLUS_3                         6                          11
  CLUS_4                         5                          20
  CLUS_5                         9                           8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED       14      7      5     13      0
  DEL PEAK  2(1P33) WILD-TYPE     28     20     20     17      3
D24V5, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        14                          28
  CLUS_2                         7                          20
  CLUS_3                         5                          20
  CLUS_4                        13                          17
  CLUS_5                         0                           3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P33) MUTATED        4      4      7      9      8      7
  DEL PEAK  2(1P33) WILD-TYPE     16     16     17      9     21      9
D24V6, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         4                          16
  CLUS_2                         4                          16
  CLUS_3                         7                          17
  CLUS_4                         9                           9
  CLUS_5                         8                          21
  CLUS_6                         7                           9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED       11      5      6     12     19
  DEL PEAK  2(1P33) WILD-TYPE     21      9     27     16     38
D24V7, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        11                          21
  CLUS_2                         5                           9
  CLUS_3                         6                          27
  CLUS_4                        12                          16
  CLUS_5                        19                          38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1P33) MUTATED       12     10      3      7     14      2      5
  DEL PEAK  2(1P33) WILD-TYPE     15     26      9     12     18     16     15
D24V8, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        12                          15
  CLUS_2                        10                          26
  CLUS_3                         3                           9
  CLUS_4                         7                          12
  CLUS_5                        14                          18
  CLUS_6                         2                          16
  CLUS_7                         5                          15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED        9     19     17
  DEL PEAK  2(1P33) WILD-TYPE     15     36     45
D24V9, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         9                          15
  CLUS_2                        19                          36
  CLUS_3                        17                          45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       10     20     15
  DEL PEAK  2(1P33) WILD-TYPE     12     43     41
D24V10, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        10                          12
  CLUS_2                        20                          43
  CLUS_3                        15                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED        7      4      4      2
  DEL PEAK  2(1P33) WILD-TYPE     10     10      9      4
D24V11, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         7                          10
  CLUS_2                         4                          10
  CLUS_3                         4                           9
  CLUS_4                         2                           4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED        6      2      5      2      2
  DEL PEAK  2(1P33) WILD-TYPE      5     10     11      4      3
D24V12, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         6                           5
  CLUS_2                         2                          10
  CLUS_3                         5                          11
  CLUS_4                         2                           4
  CLUS_5                         2                           3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  3(1P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.2) MUTATED        2      3      5      4      5
  DEL PEAK  3(1P13.2) WILD-TYPE     11      5     15      9     10
D25V1, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                           2                            11
  CLUS_2                           3                             5
  CLUS_3                           5                            15
  CLUS_4                           4                             9
  CLUS_5                           5                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.2) MUTATED        1      2      2      2      4      6
  DEL PEAK  3(1P13.2) WILD-TYPE      5      8      5      7      5      2
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  3(1P13.2) MUTATED        0      2      0
  DEL PEAK  3(1P13.2) WILD-TYPE      9      6      3
D25V2, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           2                             8
  CLUS_3                           2                             5
  CLUS_4                           2                             7
  CLUS_5                           4                             5
  CLUS_6                           6                             2
  CLUS_7                           0                             9
  CLUS_8                           2                             6
  CLUS_9                           0                             3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.2) MUTATED        9     17     11     16      1
  DEL PEAK  3(1P13.2) WILD-TYPE     17     23     16     26     29
D25V3, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                           9                            17
  CLUS_2                          17                            23
  CLUS_3                          11                            16
  CLUS_4                          16                            26
  CLUS_5                           1                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.2) MUTATED        2     11      5      8     10
  DEL PEAK  3(1P13.2) WILD-TYPE     12     12     12     17      7
D25V4, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                          11                            12
  CLUS_3                           5                            12
  CLUS_4                           8                            17
  CLUS_5                          10                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.2) MUTATED       12     11      7     12      0
  DEL PEAK  3(1P13.2) WILD-TYPE     30     16     18     18      3
D25V5, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          12                            30
  CLUS_2                          11                            16
  CLUS_3                           7                            18
  CLUS_4                          12                            18
  CLUS_5                           0                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.2) MUTATED        5      6      9      8      7      7
  DEL PEAK  3(1P13.2) WILD-TYPE     15     14     15     10     22      9
D25V6, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                           5                            15
  CLUS_2                           6                            14
  CLUS_3                           9                            15
  CLUS_4                           8                            10
  CLUS_5                           7                            22
  CLUS_6                           7                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.2) MUTATED       12      3      8     12     19
  DEL PEAK  3(1P13.2) WILD-TYPE     20     11     25     16     38
D25V7, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          12                            20
  CLUS_2                           3                            11
  CLUS_3                           8                            25
  CLUS_4                          12                            16
  CLUS_5                          19                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.2) MUTATED       16      7      3      8     12      3
  DEL PEAK  3(1P13.2) WILD-TYPE     11     29      9     11     20     15
                               vv
clus                            CLUS_7
  DEL PEAK  3(1P13.2) MUTATED        5
  DEL PEAK  3(1P13.2) WILD-TYPE     15
D25V8, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          16                            11
  CLUS_2                           7                            29
  CLUS_3                           3                             9
  CLUS_4                           8                            11
  CLUS_5                          12                            20
  CLUS_6                           3                            15
  CLUS_7                           5                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       10     19     16
  DEL PEAK  3(1P13.2) WILD-TYPE     14     36     46
D25V9, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          10                            14
  CLUS_2                          19                            36
  CLUS_3                          16                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       10     21     14
  DEL PEAK  3(1P13.2) WILD-TYPE     12     42     42
D25V10, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          10                            12
  CLUS_2                          21                            42
  CLUS_3                          14                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED        9      4      5      2
  DEL PEAK  3(1P13.2) WILD-TYPE      8     10      8      4
D25V11, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                           9                             8
  CLUS_2                           4                            10
  CLUS_3                           5                             8
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.2) MUTATED        5      3      7      2      3
  DEL PEAK  3(1P13.2) WILD-TYPE      6      9      9      4      2
D25V12, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                           5                             6
  CLUS_2                           3                             9
  CLUS_3                           7                             9
  CLUS_4                           2                             4
  CLUS_5                           3                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  4(2P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P12) MUTATED        2      3      0      4      1
  DEL PEAK  4(2P12) WILD-TYPE     11      5     20      9     14
D26V1, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         2                          11
  CLUS_2                         3                           5
  CLUS_3                         0                          20
  CLUS_4                         4                           9
  CLUS_5                         1                          14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  4(2P12) MUTATED        0      1      0      3      1      2      1
  DEL PEAK  4(2P12) WILD-TYPE      6      9      7      6      8      6      8
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK  4(2P12) MUTATED        2      0
  DEL PEAK  4(2P12) WILD-TYPE      6      3
D26V2, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         0                           6
  CLUS_2                         1                           9
  CLUS_3                         0                           7
  CLUS_4                         3                           6
  CLUS_5                         1                           8
  CLUS_6                         2                           6
  CLUS_7                         1                           8
  CLUS_8                         2                           6
  CLUS_9                         0                           3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P12) MUTATED        0      1      5      6      1
  DEL PEAK  4(2P12) WILD-TYPE     26     39     22     36     29
D26V3, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         0                          26
  CLUS_2                         1                          39
  CLUS_3                         5                          22
  CLUS_4                         6                          36
  CLUS_5                         1                          29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P12) MUTATED        0      1      0      1      1
  DEL PEAK  4(2P12) WILD-TYPE     14     22     17     24     16
D26V4, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         0                          14
  CLUS_2                         1                          22
  CLUS_3                         0                          17
  CLUS_4                         1                          24
  CLUS_5                         1                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P12) MUTATED        2      4      4      1      0
  DEL PEAK  4(2P12) WILD-TYPE     40     23     21     29      3
D26V5, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         2                          40
  CLUS_2                         4                          23
  CLUS_3                         4                          21
  CLUS_4                         1                          29
  CLUS_5                         0                           3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2P12) MUTATED        2      2      3      2      0      2
  DEL PEAK  4(2P12) WILD-TYPE     18     18     21     16     29     14
D26V6, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         2                          18
  CLUS_2                         2                          18
  CLUS_3                         3                          21
  CLUS_4                         2                          16
  CLUS_5                         0                          29
  CLUS_6                         2                          14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P12) MUTATED        2      1      2      1      7
  DEL PEAK  4(2P12) WILD-TYPE     30     13     31     27     50
D26V7, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         2                          30
  CLUS_2                         1                          13
  CLUS_3                         2                          31
  CLUS_4                         1                          27
  CLUS_5                         7                          50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  4(2P12) MUTATED        2      1      0      0      4      4      2
  DEL PEAK  4(2P12) WILD-TYPE     25     35     12     19     28     14     18
D26V8, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         2                          25
  CLUS_2                         1                          35
  CLUS_3                         0                          12
  CLUS_4                         0                          19
  CLUS_5                         4                          28
  CLUS_6                         4                          14
  CLUS_7                         2                          18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        1      2      9
  DEL PEAK  4(2P12) WILD-TYPE     23     53     53
D26V9, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         1                          23
  CLUS_2                         2                          53
  CLUS_3                         9                          53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        1      3      8
  DEL PEAK  4(2P12) WILD-TYPE     21     60     48
D26V10, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         1                          21
  CLUS_2                         3                          60
  CLUS_3                         8                          48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        1      0      0      1
  DEL PEAK  4(2P12) WILD-TYPE     16     14     13      5
D26V11, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  4(2P12) MUTATED"
clus
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                          2                          48 
                 TCGA-AF-2687                  TCGA-AF-3911 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-4110                  TCGA-AF-6655 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-6672                  TCGA-AG-3725 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3732 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-4021                  TCGA-AG-4022 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-BM-6198 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6621                  TCGA-CI-6624 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4749 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6157                  TCGA-DC-6158 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6683                  TCGA-DY-A1DC 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6511 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6464                  TCGA-F5-6465 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6702                  TCGA-F5-6810 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P12) MUTATED        0      1      0      0      1
  DEL PEAK  4(2P12) WILD-TYPE     11     11     16      6      4
D26V12, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  4(2P12) MUTATED"
clus
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                          2                          48 
                 TCGA-AF-2687                  TCGA-AF-3911 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-4110                  TCGA-AF-6655 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-6672                  TCGA-AG-3725 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3732 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-4021                  TCGA-AG-4022 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-BM-6198 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6621                  TCGA-CI-6624 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4749 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6157                  TCGA-DC-6158 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6683                  TCGA-DY-A1DC 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6511 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6464                  TCGA-F5-6465 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6702                  TCGA-F5-6810 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 

Clustering(27) Variable = DEL PEAK  5(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P14.2) MUTATED        2      2      3      3      3
  DEL PEAK  5(3P14.2) WILD-TYPE     11      6     17     10     12
D27V1, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           2                            11
  CLUS_2                           2                             6
  CLUS_3                           3                            17
  CLUS_4                           3                            10
  CLUS_5                           3                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P14.2) MUTATED        1      2      1      2      1      1
  DEL PEAK  5(3P14.2) WILD-TYPE      5      8      6      7      8      7
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  5(3P14.2) MUTATED        2      3      0
  DEL PEAK  5(3P14.2) WILD-TYPE      7      5      3
D27V2, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           2                             8
  CLUS_3                           1                             6
  CLUS_4                           2                             7
  CLUS_5                           1                             8
  CLUS_6                           1                             7
  CLUS_7                           2                             7
  CLUS_8                           3                             5
  CLUS_9                           0                             3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P14.2) MUTATED        5      6      7      7      6
  DEL PEAK  5(3P14.2) WILD-TYPE     21     34     20     35     24
D27V3, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           5                            21
  CLUS_2                           6                            34
  CLUS_3                           7                            20
  CLUS_4                           7                            35
  CLUS_5                           6                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P14.2) MUTATED        4      7      3      4      0
  DEL PEAK  5(3P14.2) WILD-TYPE     10     16     14     21     17
D27V4, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           7                            16
  CLUS_3                           3                            14
  CLUS_4                           4                            21
  CLUS_5                           0                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P14.2) MUTATED        6      3      9      5      0
  DEL PEAK  5(3P14.2) WILD-TYPE     36     24     16     25      3
D27V5, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           6                            36
  CLUS_2                           3                            24
  CLUS_3                           9                            16
  CLUS_4                           5                            25
  CLUS_5                           0                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P14.2) MUTATED        4      2      3      7      5      2
  DEL PEAK  5(3P14.2) WILD-TYPE     16     18     21     11     24     14
D27V6, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           4                            16
  CLUS_2                           2                            18
  CLUS_3                           3                            21
  CLUS_4                           7                            11
  CLUS_5                           5                            24
  CLUS_6                           2                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P14.2) MUTATED        5      5      6      4     11
  DEL PEAK  5(3P14.2) WILD-TYPE     27      9     27     24     46
D27V7, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           5                            27
  CLUS_2                           5                             9
  CLUS_3                           6                            27
  CLUS_4                           4                            24
  CLUS_5                          11                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P14.2) MUTATED        3      9      3      4      6      3
  DEL PEAK  5(3P14.2) WILD-TYPE     24     27      9     15     26     15
                               vv
clus                            CLUS_7
  DEL PEAK  5(3P14.2) MUTATED        3
  DEL PEAK  5(3P14.2) WILD-TYPE     17
D27V8, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           3                            24
  CLUS_2                           9                            27
  CLUS_3                           3                             9
  CLUS_4                           4                            15
  CLUS_5                           6                            26
  CLUS_6                           3                            15
  CLUS_7                           3                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P14.2) MUTATED        4     12     13
  DEL PEAK  5(3P14.2) WILD-TYPE     20     43     49
D27V9, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           4                            20
  CLUS_2                          12                            43
  CLUS_3                          13                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P14.2) MUTATED        5     13     11
  DEL PEAK  5(3P14.2) WILD-TYPE     17     50     45
D27V10, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           5                            17
  CLUS_2                          13                            50
  CLUS_3                          11                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P14.2) MUTATED        3      5      1      2
  DEL PEAK  5(3P14.2) WILD-TYPE     14      9     12      4
D27V11, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           3                            14
  CLUS_2                           5                             9
  CLUS_3                           1                            12
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P14.2) MUTATED        4      1      3      3      0
  DEL PEAK  5(3P14.2) WILD-TYPE      7     11     13      3      5
D27V12, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                           4                             7
  CLUS_2                           1                            11
  CLUS_3                           3                            13
  CLUS_4                           3                             3
  CLUS_5                           0                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  6(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q26.31) MUTATED        0      1      3      1      3
  DEL PEAK  6(3Q26.31) WILD-TYPE     13      7     17     12     12
D28V1, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            1                              7
  CLUS_3                            3                             17
  CLUS_4                            1                             12
  CLUS_5                            3                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3Q26.31) MUTATED        0      1      0      1      2      1
  DEL PEAK  6(3Q26.31) WILD-TYPE      6      9      7      8      7      7
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  6(3Q26.31) MUTATED        1      2      0
  DEL PEAK  6(3Q26.31) WILD-TYPE      8      6      3
D28V2, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            1                              9
  CLUS_3                            0                              7
  CLUS_4                            1                              8
  CLUS_5                            2                              7
  CLUS_6                            1                              7
  CLUS_7                            1                              8
  CLUS_8                            2                              6
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q26.31) MUTATED        5      2      2      4      5
  DEL PEAK  6(3Q26.31) WILD-TYPE     21     38     25     38     25
D28V3, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            5                             21
  CLUS_2                            2                             38
  CLUS_3                            2                             25
  CLUS_4                            4                             38
  CLUS_5                            5                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q26.31) MUTATED        5      1      0      3      1
  DEL PEAK  6(3Q26.31) WILD-TYPE      9     22     17     22     16
D28V4, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                            1                             22
  CLUS_3                            0                             17
  CLUS_4                            3                             22
  CLUS_5                            1                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q26.31) MUTATED        4      3      6      2      0
  DEL PEAK  6(3Q26.31) WILD-TYPE     38     24     19     28      3
D28V5, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            4                             38
  CLUS_2                            3                             24
  CLUS_3                            6                             19
  CLUS_4                            2                             28
  CLUS_5                            0                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3Q26.31) MUTATED        3      2      4      3      3      0
  DEL PEAK  6(3Q26.31) WILD-TYPE     17     18     20     15     26     16
D28V6, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            3                             17
  CLUS_2                            2                             18
  CLUS_3                            4                             20
  CLUS_4                            3                             15
  CLUS_5                            3                             26
  CLUS_6                            0                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q26.31) MUTATED        2      2      6      2      6
  DEL PEAK  6(3Q26.31) WILD-TYPE     30     12     27     26     51
D28V7, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            2                             30
  CLUS_2                            2                             12
  CLUS_3                            6                             27
  CLUS_4                            2                             26
  CLUS_5                            6                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3Q26.31) MUTATED        2      6      2      0      5      2
  DEL PEAK  6(3Q26.31) WILD-TYPE     25     30     10     19     27     16
                                vv
clus                             CLUS_7
  DEL PEAK  6(3Q26.31) MUTATED        1
  DEL PEAK  6(3Q26.31) WILD-TYPE     19
D28V8, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            6                             30
  CLUS_3                            2                             10
  CLUS_4                            0                             19
  CLUS_5                            5                             27
  CLUS_6                            2                             16
  CLUS_7                            1                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q26.31) MUTATED        4      5      6
  DEL PEAK  6(3Q26.31) WILD-TYPE     20     50     56
D28V9, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            5                             50
  CLUS_3                            6                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q26.31) MUTATED        6      5      4
  DEL PEAK  6(3Q26.31) WILD-TYPE     16     58     52
D28V10, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            6                             16
  CLUS_2                            5                             58
  CLUS_3                            4                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q26.31) MUTATED        2      3      1      0
  DEL PEAK  6(3Q26.31) WILD-TYPE     15     11     12      6
D28V11, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            2                             15
  CLUS_2                            3                             11
  CLUS_3                            1                             12
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q26.31) MUTATED        3      1      2      0      0
  DEL PEAK  6(3Q26.31) WILD-TYPE      8     11     14      6      5
D28V12, multiclass
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                            1                             11
  CLUS_3                            2                             14
  CLUS_4                            0                              6
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  7(4P13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4P13) MUTATED        4      4      5      6      7
  DEL PEAK  7(4P13) WILD-TYPE      9      4     15      7      8
D29V1, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                         4                           9
  CLUS_2                         4                           4
  CLUS_3                         5                          15
  CLUS_4                         6                           7
  CLUS_5                         7                           8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  7(4P13) MUTATED        1      5      2      4      5      4      0
  DEL PEAK  7(4P13) WILD-TYPE      5      5      5      5      4      4      9
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK  7(4P13) MUTATED        5      0
  DEL PEAK  7(4P13) WILD-TYPE      3      3
D29V2, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                         1                           5
  CLUS_2                         5                           5
  CLUS_3                         2                           5
  CLUS_4                         4                           5
  CLUS_5                         5                           4
  CLUS_6                         4                           4
  CLUS_7                         0                           9
  CLUS_8                         5                           3
  CLUS_9                         0                           3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4P13) MUTATED       13     15     17     14      1
  DEL PEAK  7(4P13) WILD-TYPE     13     25     10     28     29
D29V3, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                        13                          13
  CLUS_2                        15                          25
  CLUS_3                        17                          10
  CLUS_4                        14                          28
  CLUS_5                         1                          29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4P13) MUTATED        5      9      8      6      6
  DEL PEAK  7(4P13) WILD-TYPE      9     14      9     19     11
D29V4, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                         5                           9
  CLUS_2                         9                          14
  CLUS_3                         8                           9
  CLUS_4                         6                          19
  CLUS_5                         6                          11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4P13) MUTATED       16      5      8     13      1
  DEL PEAK  7(4P13) WILD-TYPE     26     22     17     17      2
D29V5, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                        16                          26
  CLUS_2                         5                          22
  CLUS_3                         8                          17
  CLUS_4                        13                          17
  CLUS_5                         1                           2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4P13) MUTATED        5      5      9      8      7      9
  DEL PEAK  7(4P13) WILD-TYPE     15     15     15     10     22      7
D29V6, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                         5                          15
  CLUS_2                         5                          15
  CLUS_3                         9                          15
  CLUS_4                         8                          10
  CLUS_5                         7                          22
  CLUS_6                         9                           7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4P13) MUTATED       13      4     11      9     23
  DEL PEAK  7(4P13) WILD-TYPE     19     10     22     19     34
D29V7, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                        13                          19
  CLUS_2                         4                          10
  CLUS_3                        11                          22
  CLUS_4                         9                          19
  CLUS_5                        23                          34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  7(4P13) MUTATED       13     13      5      4     15      5      5
  DEL PEAK  7(4P13) WILD-TYPE     14     23      7     15     17     13     15
D29V8, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                        13                          14
  CLUS_2                        13                          23
  CLUS_3                         5                           7
  CLUS_4                         4                          15
  CLUS_5                        15                          17
  CLUS_6                         5                          13
  CLUS_7                         5                          15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4P13) MUTATED       11     20     24
  DEL PEAK  7(4P13) WILD-TYPE     13     35     38
D29V9, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                        11                          13
  CLUS_2                        20                          35
  CLUS_3                        24                          38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4P13) MUTATED       12     21     22
  DEL PEAK  7(4P13) WILD-TYPE     10     42     34
D29V10, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                        12                          10
  CLUS_2                        21                          42
  CLUS_3                        22                          34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4P13) MUTATED        8      4      6      5
  DEL PEAK  7(4P13) WILD-TYPE      9     10      7      1
D29V11, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                         8                           9
  CLUS_2                         4                          10
  CLUS_3                         6                           7
  CLUS_4                         5                           1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4P13) MUTATED        6      4      8      4      1
  DEL PEAK  7(4P13) WILD-TYPE      5      8      8      2      4
D29V12, multiclass
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  CLUS_1                         6                           5
  CLUS_2                         4                           8
  CLUS_3                         8                           8
  CLUS_4                         4                           2
  CLUS_5                         1                           4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  8(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q22.1) MUTATED        3      4      8      7      7
  DEL PEAK  8(4Q22.1) WILD-TYPE     10      4     12      6      8
D30V1, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           3                            10
  CLUS_2                           4                             4
  CLUS_3                           8                            12
  CLUS_4                           7                             6
  CLUS_5                           7                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q22.1) MUTATED        1      4      4      4      8      3
  DEL PEAK  8(4Q22.1) WILD-TYPE      5      6      3      5      1      5
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  8(4Q22.1) MUTATED        1      4      0
  DEL PEAK  8(4Q22.1) WILD-TYPE      8      4      3
D30V2, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           4                             6
  CLUS_3                           4                             3
  CLUS_4                           4                             5
  CLUS_5                           8                             1
  CLUS_6                           3                             5
  CLUS_7                           1                             8
  CLUS_8                           4                             4
  CLUS_9                           0                             3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q22.1) MUTATED       14     20     19     17      3
  DEL PEAK  8(4Q22.1) WILD-TYPE     12     20      8     25     27
D30V3, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          14                            12
  CLUS_2                          20                            20
  CLUS_3                          19                             8
  CLUS_4                          17                            25
  CLUS_5                           3                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q22.1) MUTATED        7     12      9      9      8
  DEL PEAK  8(4Q22.1) WILD-TYPE      7     11      8     16      9
D30V4, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           7                             7
  CLUS_2                          12                            11
  CLUS_3                           9                             8
  CLUS_4                           9                            16
  CLUS_5                           8                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q22.1) MUTATED       14     10     11     18      0
  DEL PEAK  8(4Q22.1) WILD-TYPE     28     17     14     12      3
D30V5, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          14                            28
  CLUS_2                          10                            17
  CLUS_3                          11                            14
  CLUS_4                          18                            12
  CLUS_5                           0                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q22.1) MUTATED        8      6     13      9      7     10
  DEL PEAK  8(4Q22.1) WILD-TYPE     12     14     11      9     22      6
D30V6, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           8                            12
  CLUS_2                           6                            14
  CLUS_3                          13                            11
  CLUS_4                           9                             9
  CLUS_5                           7                            22
  CLUS_6                          10                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q22.1) MUTATED       15      7     14      8     29
  DEL PEAK  8(4Q22.1) WILD-TYPE     17      7     19     20     28
D30V7, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          15                            17
  CLUS_2                           7                             7
  CLUS_3                          14                            19
  CLUS_4                           8                            20
  CLUS_5                          29                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q22.1) MUTATED       15     17      5      6     18      6
  DEL PEAK  8(4Q22.1) WILD-TYPE     12     19      7     13     14     12
                               vv
clus                            CLUS_7
  DEL PEAK  8(4Q22.1) MUTATED        6
  DEL PEAK  8(4Q22.1) WILD-TYPE     14
D30V8, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          15                            12
  CLUS_2                          17                            19
  CLUS_3                           5                             7
  CLUS_4                           6                            13
  CLUS_5                          18                            14
  CLUS_6                           6                            12
  CLUS_7                           6                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED       11     28     28
  DEL PEAK  8(4Q22.1) WILD-TYPE     13     27     34
D30V9, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                          28                            27
  CLUS_3                          28                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED       14     29     24
  DEL PEAK  8(4Q22.1) WILD-TYPE      8     34     32
D30V10, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          14                             8
  CLUS_2                          29                            34
  CLUS_3                          24                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q22.1) MUTATED        9      8      7      5
  DEL PEAK  8(4Q22.1) WILD-TYPE      8      6      6      1
D30V11, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           9                             8
  CLUS_2                           8                             6
  CLUS_3                           7                             6
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q22.1) MUTATED        8      5      9      4      3
  DEL PEAK  8(4Q22.1) WILD-TYPE      3      7      7      2      2
D30V12, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           8                             3
  CLUS_2                           5                             7
  CLUS_3                           9                             7
  CLUS_4                           4                             2
  CLUS_5                           3                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  9(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED        3      4      6      7      6
  DEL PEAK  9(4Q35.1) WILD-TYPE     10      4     14      6      9
D31V1, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                           3                            10
  CLUS_2                           4                             4
  CLUS_3                           6                            14
  CLUS_4                           7                             6
  CLUS_5                           6                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED        1      4      3      5      7      2
  DEL PEAK  9(4Q35.1) WILD-TYPE      5      6      4      4      2      6
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  9(4Q35.1) MUTATED        1      3      0
  DEL PEAK  9(4Q35.1) WILD-TYPE      8      5      3
D31V2, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           4                             6
  CLUS_3                           3                             4
  CLUS_4                           5                             4
  CLUS_5                           7                             2
  CLUS_6                           2                             6
  CLUS_7                           1                             8
  CLUS_8                           3                             5
  CLUS_9                           0                             3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       16     18     18     19      1
  DEL PEAK  9(4Q35.1) WILD-TYPE     10     22      9     23     29
D31V3, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          16                            10
  CLUS_2                          18                            22
  CLUS_3                          18                             9
  CLUS_4                          19                            23
  CLUS_5                           1                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED        6     11     10     11      8
  DEL PEAK  9(4Q35.1) WILD-TYPE      8     12      7     14      9
D31V4, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                           6                             8
  CLUS_2                          11                            12
  CLUS_3                          10                             7
  CLUS_4                          11                            14
  CLUS_5                           8                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       13     13     12     14      0
  DEL PEAK  9(4Q35.1) WILD-TYPE     29     14     13     16      3
D31V5, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          13                            29
  CLUS_2                          13                            14
  CLUS_3                          12                            13
  CLUS_4                          14                            16
  CLUS_5                           0                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED        7      7     15     10      5      8
  DEL PEAK  9(4Q35.1) WILD-TYPE     13     13      9      8     24      8
D31V6, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                           7                            13
  CLUS_2                           7                            13
  CLUS_3                          15                             9
  CLUS_4                          10                             8
  CLUS_5                           5                            24
  CLUS_6                           8                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       17      6     14      9     26
  DEL PEAK  9(4Q35.1) WILD-TYPE     15      8     19     19     31
D31V7, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          17                            15
  CLUS_2                           6                             8
  CLUS_3                          14                            19
  CLUS_4                           9                            19
  CLUS_5                          26                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED       16     15      7      7     18      5
  DEL PEAK  9(4Q35.1) WILD-TYPE     11     21      5     12     14     13
                               vv
clus                            CLUS_7
  DEL PEAK  9(4Q35.1) MUTATED        4
  DEL PEAK  9(4Q35.1) WILD-TYPE     16
D31V8, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          16                            11
  CLUS_2                          15                            21
  CLUS_3                           7                             5
  CLUS_4                           7                            12
  CLUS_5                          18                            14
  CLUS_6                           5                            13
  CLUS_7                           4                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       12     29     24
  DEL PEAK  9(4Q35.1) WILD-TYPE     12     26     38
D31V9, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          12                            12
  CLUS_2                          29                            26
  CLUS_3                          24                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       15     29     21
  DEL PEAK  9(4Q35.1) WILD-TYPE      7     34     35
D31V10, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          15                             7
  CLUS_2                          29                            34
  CLUS_3                          21                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q35.1) MUTATED       11      7      7      5
  DEL PEAK  9(4Q35.1) WILD-TYPE      6      7      6      1
D31V11, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          11                             6
  CLUS_2                           7                             7
  CLUS_3                           7                             6
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED        8      6      9      4      3
  DEL PEAK  9(4Q35.1) WILD-TYPE      3      6      7      2      2
D31V12, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                           8                             3
  CLUS_2                           6                             6
  CLUS_3                           9                             7
  CLUS_4                           4                             2
  CLUS_5                           3                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 10(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q12.1) MUTATED        1      3      3      3      7
  DEL PEAK 10(5Q12.1) WILD-TYPE     12      5     17     10      8
D32V1, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           1                            12
  CLUS_2                           3                             5
  CLUS_3                           3                            17
  CLUS_4                           3                            10
  CLUS_5                           7                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5Q12.1) MUTATED        0      1      1      3      7      2
  DEL PEAK 10(5Q12.1) WILD-TYPE      6      9      6      6      2      6
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 10(5Q12.1) MUTATED        0      3      0
  DEL PEAK 10(5Q12.1) WILD-TYPE      9      5      3
D32V2, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           0                             6
  CLUS_2                           1                             9
  CLUS_3                           1                             6
  CLUS_4                           3                             6
  CLUS_5                           7                             2
  CLUS_6                           2                             6
  CLUS_7                           0                             9
  CLUS_8                           3                             5
  CLUS_9                           0                             3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q12.1) MUTATED       11     13     10     18      1
  DEL PEAK 10(5Q12.1) WILD-TYPE     15     27     17     24     29
D32V3, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          11                            15
  CLUS_2                          13                            27
  CLUS_3                          10                            17
  CLUS_4                          18                            24
  CLUS_5                           1                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q12.1) MUTATED        6      5     11      8      7
  DEL PEAK 10(5Q12.1) WILD-TYPE      8     18      6     17     10
D32V4, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           6                             8
  CLUS_2                           5                            18
  CLUS_3                          11                             6
  CLUS_4                           8                            17
  CLUS_5                           7                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q12.1) MUTATED       16      7      6     12      0
  DEL PEAK 10(5Q12.1) WILD-TYPE     26     20     19     18      3
D32V5, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          16                            26
  CLUS_2                           7                            20
  CLUS_3                           6                            19
  CLUS_4                          12                            18
  CLUS_5                           0                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5Q12.1) MUTATED        4      7      7      7      9      7
  DEL PEAK 10(5Q12.1) WILD-TYPE     16     13     17     11     20      9
D32V6, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           4                            16
  CLUS_2                           7                            13
  CLUS_3                           7                            17
  CLUS_4                           7                            11
  CLUS_5                           9                            20
  CLUS_6                           7                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q12.1) MUTATED       14      3     11      8     17
  DEL PEAK 10(5Q12.1) WILD-TYPE     18     11     22     20     40
D32V7, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          14                            18
  CLUS_2                           3                            11
  CLUS_3                          11                            22
  CLUS_4                           8                            20
  CLUS_5                          17                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5Q12.1) MUTATED       12     14      4      5     13      3
  DEL PEAK 10(5Q12.1) WILD-TYPE     15     22      8     14     19     15
                               vv
clus                            CLUS_7
  DEL PEAK 10(5Q12.1) MUTATED        2
  DEL PEAK 10(5Q12.1) WILD-TYPE     18
D32V8, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          12                            15
  CLUS_2                          14                            22
  CLUS_3                           4                             8
  CLUS_4                           5                            14
  CLUS_5                          13                            19
  CLUS_6                           3                            15
  CLUS_7                           2                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED        9     22     16
  DEL PEAK 10(5Q12.1) WILD-TYPE     15     33     46
D32V9, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           9                            15
  CLUS_2                          22                            33
  CLUS_3                          16                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       10     22     15
  DEL PEAK 10(5Q12.1) WILD-TYPE     12     41     41
D32V10, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          10                            12
  CLUS_2                          22                            41
  CLUS_3                          15                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED        8      4      7      5
  DEL PEAK 10(5Q12.1) WILD-TYPE      9     10      6      1
D32V11, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           8                             9
  CLUS_2                           4                            10
  CLUS_3                           7                             6
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q12.1) MUTATED        7      3      6      5      3
  DEL PEAK 10(5Q12.1) WILD-TYPE      4      9     10      1      2
D32V12, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           7                             4
  CLUS_2                           3                             9
  CLUS_3                           6                            10
  CLUS_4                           5                             1
  CLUS_5                           3                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 11(5Q22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q22.2) MUTATED        1      4      6      4      7
  DEL PEAK 11(5Q22.2) WILD-TYPE     12      4     14      9      8
D33V1, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                           1                            12
  CLUS_2                           4                             4
  CLUS_3                           6                            14
  CLUS_4                           4                             9
  CLUS_5                           7                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q22.2) MUTATED        0      2      2      3      8      3
  DEL PEAK 11(5Q22.2) WILD-TYPE      6      8      5      6      1      5
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 11(5Q22.2) MUTATED        0      4      0
  DEL PEAK 11(5Q22.2) WILD-TYPE      9      4      3
D33V2, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                           0                             6
  CLUS_2                           2                             8
  CLUS_3                           2                             5
  CLUS_4                           3                             6
  CLUS_5                           8                             1
  CLUS_6                           3                             5
  CLUS_7                           0                             9
  CLUS_8                           4                             4
  CLUS_9                           0                             3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q22.2) MUTATED        9     15     13     19      3
  DEL PEAK 11(5Q22.2) WILD-TYPE     17     25     14     23     27
D33V3, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                           9                            17
  CLUS_2                          15                            25
  CLUS_3                          13                            14
  CLUS_4                          19                            23
  CLUS_5                           3                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q22.2) MUTATED        6      6     10      9      7
  DEL PEAK 11(5Q22.2) WILD-TYPE      8     17      7     16     10
D33V4, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                           6                             8
  CLUS_2                           6                            17
  CLUS_3                          10                             7
  CLUS_4                           9                            16
  CLUS_5                           7                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q22.2) MUTATED       14      9      8     15      0
  DEL PEAK 11(5Q22.2) WILD-TYPE     28     18     17     15      3
D33V5, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                          14                            28
  CLUS_2                           9                            18
  CLUS_3                           8                            17
  CLUS_4                          15                            15
  CLUS_5                           0                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q22.2) MUTATED        6      7     11      7      9      6
  DEL PEAK 11(5Q22.2) WILD-TYPE     14     13     13     11     20     10
D33V6, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                           6                            14
  CLUS_2                           7                            13
  CLUS_3                          11                            13
  CLUS_4                           7                            11
  CLUS_5                           9                            20
  CLUS_6                           6                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q22.2) MUTATED       12      3     14      9     21
  DEL PEAK 11(5Q22.2) WILD-TYPE     20     11     19     19     36
D33V7, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                          12                            20
  CLUS_2                           3                            11
  CLUS_3                          14                            19
  CLUS_4                           9                            19
  CLUS_5                          21                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q22.2) MUTATED       12     13      6      5     15      5
  DEL PEAK 11(5Q22.2) WILD-TYPE     15     23      6     14     17     13
                               vv
clus                            CLUS_7
  DEL PEAK 11(5Q22.2) MUTATED        3
  DEL PEAK 11(5Q22.2) WILD-TYPE     17
D33V8, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                          12                            15
  CLUS_2                          13                            23
  CLUS_3                           6                             6
  CLUS_4                           5                            14
  CLUS_5                          15                            17
  CLUS_6                           5                            13
  CLUS_7                           3                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q22.2) MUTATED        8     24     21
  DEL PEAK 11(5Q22.2) WILD-TYPE     16     31     41
D33V9, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                           8                            16
  CLUS_2                          24                            31
  CLUS_3                          21                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q22.2) MUTATED       11     25     17
  DEL PEAK 11(5Q22.2) WILD-TYPE     11     38     39
D33V10, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                          11                            11
  CLUS_2                          25                            38
  CLUS_3                          17                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q22.2) MUTATED        6      4      9      5
  DEL PEAK 11(5Q22.2) WILD-TYPE     11     10      4      1
D33V11, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                           6                            11
  CLUS_2                           4                            10
  CLUS_3                           9                             4
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q22.2) MUTATED        7      3      8      5      1
  DEL PEAK 11(5Q22.2) WILD-TYPE      4      9      8      1      4
D33V12, multiclass
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  CLUS_1                           7                             4
  CLUS_2                           3                             9
  CLUS_3                           8                             8
  CLUS_4                           5                             1
  CLUS_5                           1                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 12(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6P25.3) MUTATED        0      2      3      2      3
  DEL PEAK 12(6P25.3) WILD-TYPE     13      6     17     11     12
D34V1, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           2                             6
  CLUS_3                           3                            17
  CLUS_4                           2                            11
  CLUS_5                           3                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6P25.3) MUTATED        1      0      2      2      2      1
  DEL PEAK 12(6P25.3) WILD-TYPE      5     10      5      7      7      7
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 12(6P25.3) MUTATED        2      0      0
  DEL PEAK 12(6P25.3) WILD-TYPE      7      8      3
D34V2, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           0                            10
  CLUS_3                           2                             5
  CLUS_4                           2                             7
  CLUS_5                           2                             7
  CLUS_6                           1                             7
  CLUS_7                           2                             7
  CLUS_8                           0                             8
  CLUS_9                           0                             3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6P25.3) MUTATED        4      7      3      7      3
  DEL PEAK 12(6P25.3) WILD-TYPE     22     33     24     35     27
D34V3, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           4                            22
  CLUS_2                           7                            33
  CLUS_3                           3                            24
  CLUS_4                           7                            35
  CLUS_5                           3                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6P25.3) MUTATED        2      6      0      5      1
  DEL PEAK 12(6P25.3) WILD-TYPE     12     17     17     20     16
D34V4, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           6                            17
  CLUS_3                           0                            17
  CLUS_4                           5                            20
  CLUS_5                           1                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6P25.3) MUTATED        7      2      4      4      1
  DEL PEAK 12(6P25.3) WILD-TYPE     35     25     21     26      2
D34V5, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                           2                            25
  CLUS_3                           4                            21
  CLUS_4                           4                            26
  CLUS_5                           1                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6P25.3) MUTATED        3      1      3      5      5      1
  DEL PEAK 12(6P25.3) WILD-TYPE     17     19     21     13     24     15
D34V6, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           3                            17
  CLUS_2                           1                            19
  CLUS_3                           3                            21
  CLUS_4                           5                            13
  CLUS_5                           5                            24
  CLUS_6                           1                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6P25.3) MUTATED        5      3      4      3      9
  DEL PEAK 12(6P25.3) WILD-TYPE     27     11     29     25     48
D34V7, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           5                            27
  CLUS_2                           3                            11
  CLUS_3                           4                            29
  CLUS_4                           3                            25
  CLUS_5                           9                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6P25.3) MUTATED        6      5      2      1      4      4
  DEL PEAK 12(6P25.3) WILD-TYPE     21     31     10     18     28     14
                               vv
clus                            CLUS_7
  DEL PEAK 12(6P25.3) MUTATED        2
  DEL PEAK 12(6P25.3) WILD-TYPE     18
D34V8, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           6                            21
  CLUS_2                           5                            31
  CLUS_3                           2                            10
  CLUS_4                           1                            18
  CLUS_5                           4                            28
  CLUS_6                           4                            14
  CLUS_7                           2                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6P25.3) MUTATED        4     10      9
  DEL PEAK 12(6P25.3) WILD-TYPE     20     45     53
D34V9, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           4                            20
  CLUS_2                          10                            45
  CLUS_3                           9                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6P25.3) MUTATED        3     12      8
  DEL PEAK 12(6P25.3) WILD-TYPE     19     51     48
D34V10, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           3                            19
  CLUS_2                          12                            51
  CLUS_3                           8                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6P25.3) MUTATED        2      3      1      0
  DEL PEAK 12(6P25.3) WILD-TYPE     15     11     12      6
D34V11, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           2                            15
  CLUS_2                           3                            11
  CLUS_3                           1                            12
  CLUS_4                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6P25.3) MUTATED        3      1      2      0      0
  DEL PEAK 12(6P25.3) WILD-TYPE      8     11     14      6      5
D34V12, multiclass
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  CLUS_1                           3                             8
  CLUS_2                           1                            11
  CLUS_3                           2                            14
  CLUS_4                           0                             6
  CLUS_5                           0                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 13(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        2      5      4      4      3
  DEL PEAK 13(6Q26) WILD-TYPE     11      3     16      9     12
D35V1, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         2                          11
  CLUS_2                         5                           3
  CLUS_3                         4                          16
  CLUS_4                         4                           9
  CLUS_5                         3                          12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(6Q26) MUTATED        1      2      2      4      2      2      3
  DEL PEAK 13(6Q26) WILD-TYPE      5      8      5      5      7      6      6
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 13(6Q26) MUTATED        2      0
  DEL PEAK 13(6Q26) WILD-TYPE      6      3
D35V2, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                           5
  CLUS_2                         2                           8
  CLUS_3                         2                           5
  CLUS_4                         4                           5
  CLUS_5                         2                           7
  CLUS_6                         2                           6
  CLUS_7                         3                           6
  CLUS_8                         2                           6
  CLUS_9                         0                           3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        4      4      4     13      5
  DEL PEAK 13(6Q26) WILD-TYPE     22     36     23     29     25
D35V3, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         4                          22
  CLUS_2                         4                          36
  CLUS_3                         4                          23
  CLUS_4                        13                          29
  CLUS_5                         5                          25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        3      4      1      3      1
  DEL PEAK 13(6Q26) WILD-TYPE     11     19     16     22     16
D35V4, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         3                          11
  CLUS_2                         4                          19
  CLUS_3                         1                          16
  CLUS_4                         3                          22
  CLUS_5                         1                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        6      5      9      2      1
  DEL PEAK 13(6Q26) WILD-TYPE     36     22     16     28      2
D35V5, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         6                          36
  CLUS_2                         5                          22
  CLUS_3                         9                          16
  CLUS_4                         2                          28
  CLUS_5                         1                           2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q26) MUTATED        8      3      3      4      4      1
  DEL PEAK 13(6Q26) WILD-TYPE     12     17     21     14     25     15
D35V6, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         8                          12
  CLUS_2                         3                          17
  CLUS_3                         3                          21
  CLUS_4                         4                          14
  CLUS_5                         4                          25
  CLUS_6                         1                          15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        5      1      7      2     15
  DEL PEAK 13(6Q26) WILD-TYPE     27     13     26     26     42
D35V7, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         5                          27
  CLUS_2                         1                          13
  CLUS_3                         7                          26
  CLUS_4                         2                          26
  CLUS_5                        15                          42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(6Q26) MUTATED        3      6      3      1      6      6      5
  DEL PEAK 13(6Q26) WILD-TYPE     24     30      9     18     26     12     15
D35V8, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         3                          24
  CLUS_2                         6                          30
  CLUS_3                         3                           9
  CLUS_4                         1                          18
  CLUS_5                         6                          26
  CLUS_6                         6                          12
  CLUS_7                         5                          15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED        4      7     18
  DEL PEAK 13(6Q26) WILD-TYPE     20     48     44
D35V9, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         4                          20
  CLUS_2                         7                          48
  CLUS_3                        18                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED        4     10     15
  DEL PEAK 13(6Q26) WILD-TYPE     18     53     41
D35V10, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         4                          18
  CLUS_2                        10                          53
  CLUS_3                        15                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        1      4      0      0
  DEL PEAK 13(6Q26) WILD-TYPE     16     10     13      6
D35V11, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                          16
  CLUS_2                         4                          10
  CLUS_3                         0                          13
  CLUS_4                         0                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        1      1      3      0      0
  DEL PEAK 13(6Q26) WILD-TYPE     10     11     13      6      5
D35V12, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                          10
  CLUS_2                         1                          11
  CLUS_3                         3                          13
  CLUS_4                         0                           6
  CLUS_5                         0                           5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 14(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7Q31.1) MUTATED        0      0      1      1      0
  DEL PEAK 14(7Q31.1) WILD-TYPE     13      8     19     12     15
D36V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 14(7Q31.1) MUTATED"
clus
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            2                            67 
                   TCGA-AF-2689                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-3400 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AG-3574 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3578 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3580                    TCGA-AG-3581 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3584                    TCGA-AG-3586 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3587                    TCGA-AG-3593 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3594                    TCGA-AG-3598 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3601 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3602                    TCGA-AG-3605 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3608                    TCGA-AG-3609 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3611                    TCGA-AG-3612 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3728                    TCGA-AG-3878 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3881                    TCGA-AG-3882 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3883                    TCGA-AG-3885 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3890 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3892                    TCGA-AG-3893 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3894                    TCGA-AG-3896 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3898                    TCGA-AG-3901 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3902                    TCGA-AG-3909 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4005                    TCGA-AG-4007 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4015 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A00C 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A023 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02X 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A032 
"DEL PEAK 14(7Q31.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7Q31.1) MUTATED        0      0      1      0      0      0
  DEL PEAK 14(7Q31.1) WILD-TYPE      6     10      6      9      9      8
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 14(7Q31.1) MUTATED        1      0      0
  DEL PEAK 14(7Q31.1) WILD-TYPE      8      8      3
D36V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 14(7Q31.1) MUTATED"
clus
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            2                            67 
                   TCGA-AF-2689                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-3400 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AG-3574 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3578 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3580                    TCGA-AG-3581 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3584                    TCGA-AG-3586 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3587                    TCGA-AG-3593 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3594                    TCGA-AG-3598 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3601 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3602                    TCGA-AG-3605 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3608                    TCGA-AG-3609 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3611                    TCGA-AG-3612 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3728                    TCGA-AG-3878 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3881                    TCGA-AG-3882 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3883                    TCGA-AG-3885 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3890 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3892                    TCGA-AG-3893 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3894                    TCGA-AG-3896 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3898                    TCGA-AG-3901 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3902                    TCGA-AG-3909 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4005                    TCGA-AG-4007 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4015 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A00C 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A023 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02X 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A032 
"DEL PEAK 14(7Q31.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7Q31.1) MUTATED        0      0      0      4      0
  DEL PEAK 14(7Q31.1) WILD-TYPE     26     40     27     38     30
D36V3, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           0                            26
  CLUS_2                           0                            40
  CLUS_3                           0                            27
  CLUS_4                           4                            38
  CLUS_5                           0                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7Q31.1) MUTATED        1      0      0      1      0
  DEL PEAK 14(7Q31.1) WILD-TYPE     13     23     17     24     17
D36V4, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 14(7Q31.1) MUTATED"
clus
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            2                            94 
                   TCGA-AF-2687                    TCGA-AF-2690 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2693                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-4110                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-A56K                    TCGA-AF-A56L 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-A56N                    TCGA-AG-3592 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3725                    TCGA-AG-3731 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3732                    TCGA-AG-3742 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4021                    TCGA-AG-4022 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A026 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AH-6544 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6621                    TCGA-CI-6622 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6464                    TCGA-F5-6465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7Q31.1) MUTATED        2      0      1      1      0
  DEL PEAK 14(7Q31.1) WILD-TYPE     40     27     24     29      3
D36V5, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           2                            40
  CLUS_2                           0                            27
  CLUS_3                           1                            24
  CLUS_4                           1                            29
  CLUS_5                           0                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7Q31.1) MUTATED        1      0      0      1      2      0
  DEL PEAK 14(7Q31.1) WILD-TYPE     19     20     24     17     27     16
D36V6, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           0                            20
  CLUS_3                           0                            24
  CLUS_4                           1                            17
  CLUS_5                           2                            27
  CLUS_6                           0                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7Q31.1) MUTATED        0      0      3      0      1
  DEL PEAK 14(7Q31.1) WILD-TYPE     32     14     30     28     56
D36V7, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           0                            32
  CLUS_2                           0                            14
  CLUS_3                           3                            30
  CLUS_4                           0                            28
  CLUS_5                           1                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7Q31.1) MUTATED        1      1      0      0      0      1
  DEL PEAK 14(7Q31.1) WILD-TYPE     26     35     12     19     32     17
                               vv
clus                            CLUS_7
  DEL PEAK 14(7Q31.1) MUTATED        1
  DEL PEAK 14(7Q31.1) WILD-TYPE     19
D36V8, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           1                            26
  CLUS_2                           1                            35
  CLUS_3                           0                            12
  CLUS_4                           0                            19
  CLUS_5                           0                            32
  CLUS_6                           1                            17
  CLUS_7                           1                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q31.1) MUTATED        0      2      2
  DEL PEAK 14(7Q31.1) WILD-TYPE     24     53     60
D36V9, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           0                            24
  CLUS_2                           2                            53
  CLUS_3                           2                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q31.1) MUTATED        0      2      2
  DEL PEAK 14(7Q31.1) WILD-TYPE     22     61     54
D36V10, multiclass
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  CLUS_1                           0                            22
  CLUS_2                           2                            61
  CLUS_3                           2                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7Q31.1) MUTATED        0      1      0      0
  DEL PEAK 14(7Q31.1) WILD-TYPE     17     13     13      6
D36V11, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 14(7Q31.1) MUTATED"
clus
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            1                            49 
                   TCGA-AF-2687                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-4110                    TCGA-AF-6655 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6672                    TCGA-AG-3725 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3732 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4021                    TCGA-AG-4022 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-BM-6198 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6621                    TCGA-CI-6624 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4749 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6681 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DY-A1DC 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6511 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6464                    TCGA-F5-6465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-G5-6233 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7Q31.1) MUTATED        1      0      0      0      0
  DEL PEAK 14(7Q31.1) WILD-TYPE     10     12     16      6      5
D36V12, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 14(7Q31.1) MUTATED"
clus
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            1                            49 
                   TCGA-AF-2687                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-4110                    TCGA-AF-6655 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6672                    TCGA-AG-3725 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3732 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4021                    TCGA-AG-4022 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-BM-6198 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6621                    TCGA-CI-6624 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4749 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6681 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DY-A1DC 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6511 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6464                    TCGA-F5-6465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-G5-6233 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" 

Clustering(37) Variable = DEL PEAK 15(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED        6      6     13      7     13
  DEL PEAK 15(8P23.2) WILD-TYPE      7      2      7      6      2
D37V1, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                           6                             7
  CLUS_2                           6                             2
  CLUS_3                          13                             7
  CLUS_4                           7                             6
  CLUS_5                          13                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.2) MUTATED        3      8      3      6      8      7
  DEL PEAK 15(8P23.2) WILD-TYPE      3      2      4      3      1      1
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 15(8P23.2) MUTATED        2      6      2
  DEL PEAK 15(8P23.2) WILD-TYPE      7      2      1
D37V2, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           8                             2
  CLUS_3                           3                             4
  CLUS_4                           6                             3
  CLUS_5                           8                             1
  CLUS_6                           7                             1
  CLUS_7                           2                             7
  CLUS_8                           6                             2
  CLUS_9                           2                             1
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED       15     25     18     38      4
  DEL PEAK 15(8P23.2) WILD-TYPE     11     15      9      4     26
D37V3, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          15                            11
  CLUS_2                          25                            15
  CLUS_3                          18                             9
  CLUS_4                          38                             4
  CLUS_5                           4                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED        7     12     11     13     13
  DEL PEAK 15(8P23.2) WILD-TYPE      7     11      6     12      4
D37V4, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                           7                             7
  CLUS_2                          12                            11
  CLUS_3                          11                             6
  CLUS_4                          13                            12
  CLUS_5                          13                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED       28     15     15     19      2
  DEL PEAK 15(8P23.2) WILD-TYPE     14     12     10     11      1
D37V5, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          28                            14
  CLUS_2                          15                            12
  CLUS_3                          15                            10
  CLUS_4                          19                            11
  CLUS_5                           2                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.2) MUTATED       13     13     15     11     15     12
  DEL PEAK 15(8P23.2) WILD-TYPE      7      7      9      7     14      4
D37V6, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          13                             7
  CLUS_2                          13                             7
  CLUS_3                          15                             9
  CLUS_4                          11                             7
  CLUS_5                          15                            14
  CLUS_6                          12                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED       22      8     10     17     42
  DEL PEAK 15(8P23.2) WILD-TYPE     10      6     23     11     15
D37V7, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          22                            10
  CLUS_2                           8                             6
  CLUS_3                          10                            23
  CLUS_4                          17                            11
  CLUS_5                          42                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.2) MUTATED       22     16      8      8     24      8
  DEL PEAK 15(8P23.2) WILD-TYPE      5     20      4     11      8     10
                               vv
clus                            CLUS_7
  DEL PEAK 15(8P23.2) MUTATED       13
  DEL PEAK 15(8P23.2) WILD-TYPE      7
D37V8, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          22                             5
  CLUS_2                          16                            20
  CLUS_3                           8                             4
  CLUS_4                           8                            11
  CLUS_5                          24                             8
  CLUS_6                           8                            10
  CLUS_7                          13                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       14     32     41
  DEL PEAK 15(8P23.2) WILD-TYPE     10     23     21
D37V9, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          14                            10
  CLUS_2                          32                            23
  CLUS_3                          41                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       16     35     36
  DEL PEAK 15(8P23.2) WILD-TYPE      6     28     20
D37V10, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          16                             6
  CLUS_2                          35                            28
  CLUS_3                          36                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P23.2) MUTATED        8     10      6      4
  DEL PEAK 15(8P23.2) WILD-TYPE      9      4      7      2
D37V11, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                           8                             9
  CLUS_2                          10                             4
  CLUS_3                           6                             7
  CLUS_4                           4                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED        6      8      9      4      1
  DEL PEAK 15(8P23.2) WILD-TYPE      5      4      7      2      4
D37V12, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                           6                             5
  CLUS_2                           8                             4
  CLUS_3                           9                             7
  CLUS_4                           4                             2
  CLUS_5                           1                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 16(8Q11.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8Q11.1) MUTATED        2      2      3      3      1
  DEL PEAK 16(8Q11.1) WILD-TYPE     11      6     17     10     14
D38V1, multiclass
        clus
vv       DEL PEAK 16(8Q11.1) MUTATED DEL PEAK 16(8Q11.1) WILD-TYPE
  CLUS_1                           2                            11
  CLUS_2                           2                             6
  CLUS_3                           3                            17
  CLUS_4                           3                            10
  CLUS_5                           1                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(8Q11.1) MUTATED        1      1      1      3      0      2
  DEL PEAK 16(8Q11.1) WILD-TYPE      5      9      6      6      9      6
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 16(8Q11.1) MUTATED        0      3      0
  DEL PEAK 16(8Q11.1) WILD-TYPE      9      5      3
D38V2, multiclass
        clus
vv       DEL PEAK 16(8Q11.1) MUTATED DEL PEAK 16(8Q11.1) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           1                             9
  CLUS_3                           1                             6
  CLUS_4                           3                             6
  CLUS_5                           0                             9
  CLUS_6                           2                             6
  CLUS_7                           0                             9
  CLUS_8                           3                             5
  CLUS_9                           0                             3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8Q11.1) MUTATED        4      4      7      2      0
  DEL PEAK 16(8Q11.1) WILD-TYPE     22     36     20     40     30
D38V3, multiclass
        clus
vv       DEL PEAK 16(8Q11.1) MUTATED DEL PEAK 16(8Q11.1) WILD-TYPE
  CLUS_1                           4                            22
  CLUS_2                           4                            36
  CLUS_3                           7                            20
  CLUS_4                           2                            40
  CLUS_5                           0                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8Q11.1) MUTATED        0      1      3      0      2
  DEL PEAK 16(8Q11.1) WILD-TYPE     14     22     14     25     15
D38V4, multiclass
        clus
vv       DEL PEAK 16(8Q11.1) MUTATED DEL PEAK 16(8Q11.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           1                            22
  CLUS_3                           3                            14
  CLUS_4                           0                            25
  CLUS_5                           2                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8Q11.1) MUTATED        5      2      2      2      0
  DEL PEAK 16(8Q11.1) WILD-TYPE     37     25     23     28      3
D38V5, multiclass
        clus
vv       DEL PEAK 16(8Q11.1) MUTATED DEL PEAK 16(8Q11.1) WILD-TYPE
  CLUS_1                           5                            37
  CLUS_2                           2                            25
  CLUS_3                           2                            23
  CLUS_4                           2                            28
  CLUS_5                           0                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(8Q11.1) MUTATED        1      1      3      1      2      3
  DEL PEAK 16(8Q11.1) WILD-TYPE     19     19     21     17     27     13
D38V6, multiclass
        clus
vv       DEL PEAK 16(8Q11.1) MUTATED DEL PEAK 16(8Q11.1) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           1                            19
  CLUS_3                           3                            21
  CLUS_4                           1                            17
  CLUS_5                           2                            27
  CLUS_6                           3                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8Q11.1) MUTATED        3      0      2      3      8
  DEL PEAK 16(8Q11.1) WILD-TYPE     29     14     31     25     49
D38V7, multiclass
        clus
vv       DEL PEAK 16(8Q11.1) MUTATED DEL PEAK 16(8Q11.1) WILD-TYPE
  CLUS_1                           3                            29
  CLUS_2                           0                            14
  CLUS_3                           2                            31
  CLUS_4                           3                            25
  CLUS_5                           8                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(8Q11.1) MUTATED        3      0      0      3      5      3
  DEL PEAK 16(8Q11.1) WILD-TYPE     24     36     12     16     27     15
                               vv
clus                            CLUS_7
  DEL PEAK 16(8Q11.1) MUTATED        2
  DEL PEAK 16(8Q11.1) WILD-TYPE     18
D38V8, multiclass
        clus
vv       DEL PEAK 16(8Q11.1) MUTATED DEL PEAK 16(8Q11.1) WILD-TYPE
  CLUS_1                           3                            24
  CLUS_2                           0                            36
  CLUS_3                           0                            12
  CLUS_4                           3                            16
  CLUS_5                           5                            27
  CLUS_6                           3                            15
  CLUS_7                           2                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8Q11.1) MUTATED        2      4     11
  DEL PEAK 16(8Q11.1) WILD-TYPE     22     51     51
D38V9, multiclass
        clus
vv       DEL PEAK 16(8Q11.1) MUTATED DEL PEAK 16(8Q11.1) WILD-TYPE
  CLUS_1                           2                            22
  CLUS_2                           4                            51
  CLUS_3                          11                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8Q11.1) MUTATED        2      4     11
  DEL PEAK 16(8Q11.1) WILD-TYPE     20     59     45
D38V10, multiclass
        clus
vv       DEL PEAK 16(8Q11.1) MUTATED DEL PEAK 16(8Q11.1) WILD-TYPE
  CLUS_1                           2                            20
  CLUS_2                           4                            59
  CLUS_3                          11                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8Q11.1) MUTATED        1      0      2      1
  DEL PEAK 16(8Q11.1) WILD-TYPE     16     14     11      5
D38V11, multiclass
        clus
vv       DEL PEAK 16(8Q11.1) MUTATED DEL PEAK 16(8Q11.1) WILD-TYPE
  CLUS_1                           1                            16
  CLUS_2                           0                            14
  CLUS_3                           2                            11
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8Q11.1) MUTATED        1      0      2      0      1
  DEL PEAK 16(8Q11.1) WILD-TYPE     10     12     14      6      4
D38V12, multiclass
        clus
vv       DEL PEAK 16(8Q11.1) MUTATED DEL PEAK 16(8Q11.1) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           0                            12
  CLUS_3                           2                            14
  CLUS_4                           0                             6
  CLUS_5                           1                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 17(10Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q21.1) MUTATED        3      4      8      5      1
  DEL PEAK 17(10Q21.1) WILD-TYPE     10      4     12      8     14
D39V1, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            3                             10
  CLUS_2                            4                              4
  CLUS_3                            8                             12
  CLUS_4                            5                              8
  CLUS_5                            1                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q21.1) MUTATED        1      2      4      4      2      4
  DEL PEAK 17(10Q21.1) WILD-TYPE      5      8      3      5      7      4
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 17(10Q21.1) MUTATED        2      2      0
  DEL PEAK 17(10Q21.1) WILD-TYPE      7      6      3
D39V2, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            2                              8
  CLUS_3                            4                              3
  CLUS_4                            4                              5
  CLUS_5                            2                              7
  CLUS_6                            4                              4
  CLUS_7                            2                              7
  CLUS_8                            2                              6
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q21.1) MUTATED        8     10      9     12      2
  DEL PEAK 17(10Q21.1) WILD-TYPE     18     30     18     30     28
D39V3, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            8                             18
  CLUS_2                           10                             30
  CLUS_3                            9                             18
  CLUS_4                           12                             30
  CLUS_5                            2                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q21.1) MUTATED        4      2      6      3      5
  DEL PEAK 17(10Q21.1) WILD-TYPE     10     21     11     22     12
D39V4, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            2                             21
  CLUS_3                            6                             11
  CLUS_4                            3                             22
  CLUS_5                            5                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q21.1) MUTATED       14      7      3      5      0
  DEL PEAK 17(10Q21.1) WILD-TYPE     28     20     22     25      3
D39V5, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                           14                             28
  CLUS_2                            7                             20
  CLUS_3                            3                             22
  CLUS_4                            5                             25
  CLUS_5                            0                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q21.1) MUTATED        2      3      7      2     10      5
  DEL PEAK 17(10Q21.1) WILD-TYPE     18     17     17     16     19     11
D39V6, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            2                             18
  CLUS_2                            3                             17
  CLUS_3                            7                             17
  CLUS_4                            2                             16
  CLUS_5                           10                             19
  CLUS_6                            5                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q21.1) MUTATED        5      2     12      5     17
  DEL PEAK 17(10Q21.1) WILD-TYPE     27     12     21     23     40
D39V7, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            5                             27
  CLUS_2                            2                             12
  CLUS_3                           12                             21
  CLUS_4                            5                             23
  CLUS_5                           17                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q21.1) MUTATED        8      7      1      4     11      6
  DEL PEAK 17(10Q21.1) WILD-TYPE     19     29     11     15     21     12
                                vv
clus                             CLUS_7
  DEL PEAK 17(10Q21.1) MUTATED        4
  DEL PEAK 17(10Q21.1) WILD-TYPE     16
D39V8, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            8                             19
  CLUS_2                            7                             29
  CLUS_3                            1                             11
  CLUS_4                            4                             15
  CLUS_5                           11                             21
  CLUS_6                            6                             12
  CLUS_7                            4                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q21.1) MUTATED        4     13     19
  DEL PEAK 17(10Q21.1) WILD-TYPE     20     42     43
D39V9, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                           13                             42
  CLUS_3                           19                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q21.1) MUTATED        9     13     14
  DEL PEAK 17(10Q21.1) WILD-TYPE     13     50     42
D39V10, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            9                             13
  CLUS_2                           13                             50
  CLUS_3                           14                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q21.1) MUTATED        4      4      2      1
  DEL PEAK 17(10Q21.1) WILD-TYPE     13     10     11      5
D39V11, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            4                             13
  CLUS_2                            4                             10
  CLUS_3                            2                             11
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q21.1) MUTATED        4      3      2      1      1
  DEL PEAK 17(10Q21.1) WILD-TYPE      7      9     14      5      4
D39V12, multiclass
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            3                              9
  CLUS_3                            2                             14
  CLUS_4                            1                              5
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 18(10Q25.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q25.2) MUTATED        5      4      4      5      3
  DEL PEAK 18(10Q25.2) WILD-TYPE      8      4     16      8     12
D40V1, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                            5                              8
  CLUS_2                            4                              4
  CLUS_3                            4                             16
  CLUS_4                            5                              8
  CLUS_5                            3                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10Q25.2) MUTATED        2      2      2      5      2      4
  DEL PEAK 18(10Q25.2) WILD-TYPE      4      8      5      4      7      4
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 18(10Q25.2) MUTATED        3      1      0
  DEL PEAK 18(10Q25.2) WILD-TYPE      6      7      3
D40V2, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            2                              8
  CLUS_3                            2                              5
  CLUS_4                            5                              4
  CLUS_5                            2                              7
  CLUS_6                            4                              4
  CLUS_7                            3                              6
  CLUS_8                            1                              7
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q25.2) MUTATED       11     12      7     14      4
  DEL PEAK 18(10Q25.2) WILD-TYPE     15     28     20     28     26
D40V3, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                           11                             15
  CLUS_2                           12                             28
  CLUS_3                            7                             20
  CLUS_4                           14                             28
  CLUS_5                            4                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q25.2) MUTATED        4      3      6      7      7
  DEL PEAK 18(10Q25.2) WILD-TYPE     10     20     11     18     10
D40V4, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            3                             20
  CLUS_3                            6                             11
  CLUS_4                            7                             18
  CLUS_5                            7                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q25.2) MUTATED       13     11      6      7      1
  DEL PEAK 18(10Q25.2) WILD-TYPE     29     16     19     23      2
D40V5, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                           11                             16
  CLUS_3                            6                             19
  CLUS_4                            7                             23
  CLUS_5                            1                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10Q25.2) MUTATED        5      4      8      5      9      7
  DEL PEAK 18(10Q25.2) WILD-TYPE     15     16     16     13     20      9
D40V6, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                            5                             15
  CLUS_2                            4                             16
  CLUS_3                            8                             16
  CLUS_4                            5                             13
  CLUS_5                            9                             20
  CLUS_6                            7                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q25.2) MUTATED       10      1     13      6     17
  DEL PEAK 18(10Q25.2) WILD-TYPE     22     13     20     22     40
D40V7, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                           10                             22
  CLUS_2                            1                             13
  CLUS_3                           13                             20
  CLUS_4                            6                             22
  CLUS_5                           17                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10Q25.2) MUTATED       14      6      2      3      8      8
  DEL PEAK 18(10Q25.2) WILD-TYPE     13     30     10     16     24     10
                                vv
clus                             CLUS_7
  DEL PEAK 18(10Q25.2) MUTATED        6
  DEL PEAK 18(10Q25.2) WILD-TYPE     14
D40V8, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                           14                             13
  CLUS_2                            6                             30
  CLUS_3                            2                             10
  CLUS_4                            3                             16
  CLUS_5                            8                             24
  CLUS_6                            8                             10
  CLUS_7                            6                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q25.2) MUTATED        8     14     20
  DEL PEAK 18(10Q25.2) WILD-TYPE     16     41     42
D40V9, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                            8                             16
  CLUS_2                           14                             41
  CLUS_3                           20                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q25.2) MUTATED        9     15     18
  DEL PEAK 18(10Q25.2) WILD-TYPE     13     48     38
D40V10, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                            9                             13
  CLUS_2                           15                             48
  CLUS_3                           18                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q25.2) MUTATED        7      5      2      1
  DEL PEAK 18(10Q25.2) WILD-TYPE     10      9     11      5
D40V11, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                            7                             10
  CLUS_2                            5                              9
  CLUS_3                            2                             11
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q25.2) MUTATED        5      4      3      1      2
  DEL PEAK 18(10Q25.2) WILD-TYPE      6      8     13      5      3
D40V12, multiclass
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  CLUS_1                            5                              6
  CLUS_2                            4                              8
  CLUS_3                            3                             13
  CLUS_4                            1                              5
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 19(11Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q22.3) MUTATED        3      6      4      2      0
  DEL PEAK 19(11Q22.3) WILD-TYPE     10      2     16     11     15
D41V1, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            3                             10
  CLUS_2                            6                              2
  CLUS_3                            4                             16
  CLUS_4                            2                             11
  CLUS_5                            0                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(11Q22.3) MUTATED        0      3      3      5      0      2
  DEL PEAK 19(11Q22.3) WILD-TYPE      6      7      4      4      9      6
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 19(11Q22.3) MUTATED        2      0      0
  DEL PEAK 19(11Q22.3) WILD-TYPE      7      8      3
D41V2, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            3                              7
  CLUS_3                            3                              4
  CLUS_4                            5                              4
  CLUS_5                            0                              9
  CLUS_6                            2                              6
  CLUS_7                            2                              7
  CLUS_8                            0                              8
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q22.3) MUTATED        4      1     10     18      5
  DEL PEAK 19(11Q22.3) WILD-TYPE     22     39     17     24     25
D41V3, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            4                             22
  CLUS_2                            1                             39
  CLUS_3                           10                             17
  CLUS_4                           18                             24
  CLUS_5                            5                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q22.3) MUTATED        2      6      1      8      6
  DEL PEAK 19(11Q22.3) WILD-TYPE     12     17     16     17     11
D41V4, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            6                             17
  CLUS_3                            1                             16
  CLUS_4                            8                             17
  CLUS_5                            6                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q22.3) MUTATED        9      6      5      9      0
  DEL PEAK 19(11Q22.3) WILD-TYPE     33     21     20     21      3
D41V5, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            9                             33
  CLUS_2                            6                             21
  CLUS_3                            5                             20
  CLUS_4                            9                             21
  CLUS_5                            0                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(11Q22.3) MUTATED        3      2      8      6      7      3
  DEL PEAK 19(11Q22.3) WILD-TYPE     17     18     16     12     22     13
D41V6, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            3                             17
  CLUS_2                            2                             18
  CLUS_3                            8                             16
  CLUS_4                            6                             12
  CLUS_5                            7                             22
  CLUS_6                            3                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q22.3) MUTATED        5      6     12      1     14
  DEL PEAK 19(11Q22.3) WILD-TYPE     27      8     21     27     43
D41V7, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            5                             27
  CLUS_2                            6                              8
  CLUS_3                           12                             21
  CLUS_4                            1                             27
  CLUS_5                           14                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(11Q22.3) MUTATED        1     13      5      2      6      7
  DEL PEAK 19(11Q22.3) WILD-TYPE     26     23      7     17     26     11
                                vv
clus                             CLUS_7
  DEL PEAK 19(11Q22.3) MUTATED        4
  DEL PEAK 19(11Q22.3) WILD-TYPE     16
D41V8, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            1                             26
  CLUS_2                           13                             23
  CLUS_3                            5                              7
  CLUS_4                            2                             17
  CLUS_5                            6                             26
  CLUS_6                            7                             11
  CLUS_7                            4                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q22.3) MUTATED        3     15     18
  DEL PEAK 19(11Q22.3) WILD-TYPE     21     40     44
D41V9, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            3                             21
  CLUS_2                           15                             40
  CLUS_3                           18                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q22.3) MUTATED        5     16     15
  DEL PEAK 19(11Q22.3) WILD-TYPE     17     47     41
D41V10, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                           16                             47
  CLUS_3                           15                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11Q22.3) MUTATED        1      2      4      1
  DEL PEAK 19(11Q22.3) WILD-TYPE     16     12      9      5
D41V11, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            1                             16
  CLUS_2                            2                             12
  CLUS_3                            4                              9
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q22.3) MUTATED        0      1      4      2      1
  DEL PEAK 19(11Q22.3) WILD-TYPE     11     11     12      4      4
D41V12, multiclass
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                            1                             11
  CLUS_3                            4                             12
  CLUS_4                            2                              4
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 20(12Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12Q13.2) MUTATED        0      2      2      3      2
  DEL PEAK 20(12Q13.2) WILD-TYPE     13      6     18     10     13
D42V1, multiclass
        clus
vv       DEL PEAK 20(12Q13.2) MUTATED DEL PEAK 20(12Q13.2) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            2                              6
  CLUS_3                            2                             18
  CLUS_4                            3                             10
  CLUS_5                            2                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(12Q13.2) MUTATED        1      2      0      2      2      1
  DEL PEAK 20(12Q13.2) WILD-TYPE      5      8      7      7      7      7
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 20(12Q13.2) MUTATED        1      0      0
  DEL PEAK 20(12Q13.2) WILD-TYPE      8      8      3
D42V2, multiclass
        clus
vv       DEL PEAK 20(12Q13.2) MUTATED DEL PEAK 20(12Q13.2) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            2                              8
  CLUS_3                            0                              7
  CLUS_4                            2                              7
  CLUS_5                            2                              7
  CLUS_6                            1                              7
  CLUS_7                            1                              8
  CLUS_8                            0                              8
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12Q13.2) MUTATED        4      4      6      5      1
  DEL PEAK 20(12Q13.2) WILD-TYPE     22     36     21     37     29
D42V3, multiclass
        clus
vv       DEL PEAK 20(12Q13.2) MUTATED DEL PEAK 20(12Q13.2) WILD-TYPE
  CLUS_1                            4                             22
  CLUS_2                            4                             36
  CLUS_3                            6                             21
  CLUS_4                            5                             37
  CLUS_5                            1                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12Q13.2) MUTATED        0      4      3      2      2
  DEL PEAK 20(12Q13.2) WILD-TYPE     14     19     14     23     15
D42V4, multiclass
        clus
vv       DEL PEAK 20(12Q13.2) MUTATED DEL PEAK 20(12Q13.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            4                             19
  CLUS_3                            3                             14
  CLUS_4                            2                             23
  CLUS_5                            2                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12Q13.2) MUTATED        5      7      2      3      0
  DEL PEAK 20(12Q13.2) WILD-TYPE     37     20     23     27      3
D42V5, multiclass
        clus
vv       DEL PEAK 20(12Q13.2) MUTATED DEL PEAK 20(12Q13.2) WILD-TYPE
  CLUS_1                            5                             37
  CLUS_2                            7                             20
  CLUS_3                            2                             23
  CLUS_4                            3                             27
  CLUS_5                            0                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(12Q13.2) MUTATED        2      2      6      1      3      3
  DEL PEAK 20(12Q13.2) WILD-TYPE     18     18     18     17     26     13
D42V6, multiclass
        clus
vv       DEL PEAK 20(12Q13.2) MUTATED DEL PEAK 20(12Q13.2) WILD-TYPE
  CLUS_1                            2                             18
  CLUS_2                            2                             18
  CLUS_3                            6                             18
  CLUS_4                            1                             17
  CLUS_5                            3                             26
  CLUS_6                            3                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12Q13.2) MUTATED        4      2      4      1      9
  DEL PEAK 20(12Q13.2) WILD-TYPE     28     12     29     27     48
D42V7, multiclass
        clus
vv       DEL PEAK 20(12Q13.2) MUTATED DEL PEAK 20(12Q13.2) WILD-TYPE
  CLUS_1                            4                             28
  CLUS_2                            2                             12
  CLUS_3                            4                             29
  CLUS_4                            1                             27
  CLUS_5                            9                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(12Q13.2) MUTATED        3      5      2      2      6      1
  DEL PEAK 20(12Q13.2) WILD-TYPE     24     31     10     17     26     17
                                vv
clus                             CLUS_7
  DEL PEAK 20(12Q13.2) MUTATED        1
  DEL PEAK 20(12Q13.2) WILD-TYPE     19
D42V8, multiclass
        clus
vv       DEL PEAK 20(12Q13.2) MUTATED DEL PEAK 20(12Q13.2) WILD-TYPE
  CLUS_1                            3                             24
  CLUS_2                            5                             31
  CLUS_3                            2                             10
  CLUS_4                            2                             17
  CLUS_5                            6                             26
  CLUS_6                            1                             17
  CLUS_7                            1                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12Q13.2) MUTATED        4      6      8
  DEL PEAK 20(12Q13.2) WILD-TYPE     20     49     54
D42V9, multiclass
        clus
vv       DEL PEAK 20(12Q13.2) MUTATED DEL PEAK 20(12Q13.2) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            6                             49
  CLUS_3                            8                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12Q13.2) MUTATED        3      9      6
  DEL PEAK 20(12Q13.2) WILD-TYPE     19     54     50
D42V10, multiclass
        clus
vv       DEL PEAK 20(12Q13.2) MUTATED DEL PEAK 20(12Q13.2) WILD-TYPE
  CLUS_1                            3                             19
  CLUS_2                            9                             54
  CLUS_3                            6                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q13.2) MUTATED        4      1      1      1
  DEL PEAK 20(12Q13.2) WILD-TYPE     13     13     12      5
D42V11, multiclass
        clus
vv       DEL PEAK 20(12Q13.2) MUTATED DEL PEAK 20(12Q13.2) WILD-TYPE
  CLUS_1                            4                             13
  CLUS_2                            1                             13
  CLUS_3                            1                             12
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12Q13.2) MUTATED        1      3      1      1      1
  DEL PEAK 20(12Q13.2) WILD-TYPE     10      9     15      5      4
D42V12, multiclass
        clus
vv       DEL PEAK 20(12Q13.2) MUTATED DEL PEAK 20(12Q13.2) WILD-TYPE
  CLUS_1                            1                             10
  CLUS_2                            3                              9
  CLUS_3                            1                             15
  CLUS_4                            1                              5
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 21(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(14Q11.2) MUTATED        3      2      9      6      8
  DEL PEAK 21(14Q11.2) WILD-TYPE     10      6     11      7      7
D43V1, multiclass
        clus
vv       DEL PEAK 21(14Q11.2) MUTATED DEL PEAK 21(14Q11.2) WILD-TYPE
  CLUS_1                            3                             10
  CLUS_2                            2                              6
  CLUS_3                            9                             11
  CLUS_4                            6                              7
  CLUS_5                            8                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(14Q11.2) MUTATED        3      2      4      1      7      3
  DEL PEAK 21(14Q11.2) WILD-TYPE      3      8      3      8      2      5
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 21(14Q11.2) MUTATED        4      4      0
  DEL PEAK 21(14Q11.2) WILD-TYPE      5      4      3
D43V2, multiclass
        clus
vv       DEL PEAK 21(14Q11.2) MUTATED DEL PEAK 21(14Q11.2) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            2                              8
  CLUS_3                            4                              3
  CLUS_4                            1                              8
  CLUS_5                            7                              2
  CLUS_6                            3                              5
  CLUS_7                            4                              5
  CLUS_8                            4                              4
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(14Q11.2) MUTATED       16     23     17     10      4
  DEL PEAK 21(14Q11.2) WILD-TYPE     10     17     10     32     26
D43V3, multiclass
        clus
vv       DEL PEAK 21(14Q11.2) MUTATED DEL PEAK 21(14Q11.2) WILD-TYPE
  CLUS_1                           16                             10
  CLUS_2                           23                             17
  CLUS_3                           17                             10
  CLUS_4                           10                             32
  CLUS_5                            4                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(14Q11.2) MUTATED        6     11     11      8      7
  DEL PEAK 21(14Q11.2) WILD-TYPE      8     12      6     17     10
D43V4, multiclass
        clus
vv       DEL PEAK 21(14Q11.2) MUTATED DEL PEAK 21(14Q11.2) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                           11                             12
  CLUS_3                           11                              6
  CLUS_4                            8                             17
  CLUS_5                            7                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(14Q11.2) MUTATED       19     13     11     11      1
  DEL PEAK 21(14Q11.2) WILD-TYPE     23     14     14     19      2
D43V5, multiclass
        clus
vv       DEL PEAK 21(14Q11.2) MUTATED DEL PEAK 21(14Q11.2) WILD-TYPE
  CLUS_1                           19                             23
  CLUS_2                           13                             14
  CLUS_3                           11                             14
  CLUS_4                           11                             19
  CLUS_5                            1                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(14Q11.2) MUTATED       10      8     12      5     11      9
  DEL PEAK 21(14Q11.2) WILD-TYPE     10     12     12     13     18      7
D43V6, multiclass
        clus
vv       DEL PEAK 21(14Q11.2) MUTATED DEL PEAK 21(14Q11.2) WILD-TYPE
  CLUS_1                           10                             10
  CLUS_2                            8                             12
  CLUS_3                           12                             12
  CLUS_4                            5                             13
  CLUS_5                           11                             18
  CLUS_6                            9                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(14Q11.2) MUTATED       10      7     12     16     24
  DEL PEAK 21(14Q11.2) WILD-TYPE     22      7     21     12     33
D43V7, multiclass
        clus
vv       DEL PEAK 21(14Q11.2) MUTATED DEL PEAK 21(14Q11.2) WILD-TYPE
  CLUS_1                           10                             22
  CLUS_2                            7                              7
  CLUS_3                           12                             21
  CLUS_4                           16                             12
  CLUS_5                           24                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(14Q11.2) MUTATED       12     15      3     12     16      3
  DEL PEAK 21(14Q11.2) WILD-TYPE     15     21      9      7     16     15
                                vv
clus                             CLUS_7
  DEL PEAK 21(14Q11.2) MUTATED        8
  DEL PEAK 21(14Q11.2) WILD-TYPE     12
D43V8, multiclass
        clus
vv       DEL PEAK 21(14Q11.2) MUTATED DEL PEAK 21(14Q11.2) WILD-TYPE
  CLUS_1                           12                             15
  CLUS_2                           15                             21
  CLUS_3                            3                              9
  CLUS_4                           12                              7
  CLUS_5                           16                             16
  CLUS_6                            3                             15
  CLUS_7                            8                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(14Q11.2) MUTATED        7     30     24
  DEL PEAK 21(14Q11.2) WILD-TYPE     17     25     38
D43V9, multiclass
        clus
vv       DEL PEAK 21(14Q11.2) MUTATED DEL PEAK 21(14Q11.2) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                           30                             25
  CLUS_3                           24                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(14Q11.2) MUTATED       11     30     20
  DEL PEAK 21(14Q11.2) WILD-TYPE     11     33     36
D43V10, multiclass
        clus
vv       DEL PEAK 21(14Q11.2) MUTATED DEL PEAK 21(14Q11.2) WILD-TYPE
  CLUS_1                           11                             11
  CLUS_2                           30                             33
  CLUS_3                           20                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(14Q11.2) MUTATED        7      9      7      4
  DEL PEAK 21(14Q11.2) WILD-TYPE     10      5      6      2
D43V11, multiclass
        clus
vv       DEL PEAK 21(14Q11.2) MUTATED DEL PEAK 21(14Q11.2) WILD-TYPE
  CLUS_1                            7                             10
  CLUS_2                            9                              5
  CLUS_3                            7                              6
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(14Q11.2) MUTATED        6      6      9      4      2
  DEL PEAK 21(14Q11.2) WILD-TYPE      5      6      7      2      3
D43V12, multiclass
        clus
vv       DEL PEAK 21(14Q11.2) MUTATED DEL PEAK 21(14Q11.2) WILD-TYPE
  CLUS_1                            6                              5
  CLUS_2                            6                              6
  CLUS_3                            9                              7
  CLUS_4                            4                              2
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 22(14Q31.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q31.1) MUTATED        3      2      9      6      8
  DEL PEAK 22(14Q31.1) WILD-TYPE     10      6     11      7      7
D44V1, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                            3                             10
  CLUS_2                            2                              6
  CLUS_3                            9                             11
  CLUS_4                            6                              7
  CLUS_5                            8                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(14Q31.1) MUTATED        2      2      5      2      7      3
  DEL PEAK 22(14Q31.1) WILD-TYPE      4      8      2      7      2      5
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 22(14Q31.1) MUTATED        3      4      0
  DEL PEAK 22(14Q31.1) WILD-TYPE      6      4      3
D44V2, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            2                              8
  CLUS_3                            5                              2
  CLUS_4                            2                              7
  CLUS_5                            7                              2
  CLUS_6                            3                              5
  CLUS_7                            3                              6
  CLUS_8                            4                              4
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q31.1) MUTATED       16     25     15     13      3
  DEL PEAK 22(14Q31.1) WILD-TYPE     10     15     12     29     27
D44V3, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                           16                             10
  CLUS_2                           25                             15
  CLUS_3                           15                             12
  CLUS_4                           13                             29
  CLUS_5                            3                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q31.1) MUTATED        7     12     11      8      7
  DEL PEAK 22(14Q31.1) WILD-TYPE      7     11      6     17     10
D44V4, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                            7                              7
  CLUS_2                           12                             11
  CLUS_3                           11                              6
  CLUS_4                            8                             17
  CLUS_5                            7                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q31.1) MUTATED       19     12     13     13      1
  DEL PEAK 22(14Q31.1) WILD-TYPE     23     15     12     17      2
D44V5, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                           19                             23
  CLUS_2                           12                             15
  CLUS_3                           13                             12
  CLUS_4                           13                             17
  CLUS_5                            1                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(14Q31.1) MUTATED       11      8     11      7     11     10
  DEL PEAK 22(14Q31.1) WILD-TYPE      9     12     13     11     18      6
D44V6, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                           11                              9
  CLUS_2                            8                             12
  CLUS_3                           11                             13
  CLUS_4                            7                             11
  CLUS_5                           11                             18
  CLUS_6                           10                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q31.1) MUTATED       12      4     12     17     26
  DEL PEAK 22(14Q31.1) WILD-TYPE     20     10     21     11     31
D44V7, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                           12                             20
  CLUS_2                            4                             10
  CLUS_3                           12                             21
  CLUS_4                           17                             11
  CLUS_5                           26                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(14Q31.1) MUTATED       14     14      3     12     17      4
  DEL PEAK 22(14Q31.1) WILD-TYPE     13     22      9      7     15     14
                                vv
clus                             CLUS_7
  DEL PEAK 22(14Q31.1) MUTATED        7
  DEL PEAK 22(14Q31.1) WILD-TYPE     13
D44V8, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                           14                             13
  CLUS_2                           14                             22
  CLUS_3                            3                              9
  CLUS_4                           12                              7
  CLUS_5                           17                             15
  CLUS_6                            4                             14
  CLUS_7                            7                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q31.1) MUTATED        9     28     25
  DEL PEAK 22(14Q31.1) WILD-TYPE     15     27     37
D44V9, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                            9                             15
  CLUS_2                           28                             27
  CLUS_3                           25                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q31.1) MUTATED       12     30     20
  DEL PEAK 22(14Q31.1) WILD-TYPE     10     33     36
D44V10, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                           12                             10
  CLUS_2                           30                             33
  CLUS_3                           20                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(14Q31.1) MUTATED        8     10      6      4
  DEL PEAK 22(14Q31.1) WILD-TYPE      9      4      7      2
D44V11, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                            8                              9
  CLUS_2                           10                              4
  CLUS_3                            6                              7
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q31.1) MUTATED        7      6      9      4      2
  DEL PEAK 22(14Q31.1) WILD-TYPE      4      6      7      2      3
D44V12, multiclass
        clus
vv       DEL PEAK 22(14Q31.1) MUTATED DEL PEAK 22(14Q31.1) WILD-TYPE
  CLUS_1                            7                              4
  CLUS_2                            6                              6
  CLUS_3                            9                              7
  CLUS_4                            4                              2
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 23(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(15Q21.1) MUTATED        3      7      9      6      9
  DEL PEAK 23(15Q21.1) WILD-TYPE     10      1     11      7      6
D45V1, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                            3                             10
  CLUS_2                            7                              1
  CLUS_3                            9                             11
  CLUS_4                            6                              7
  CLUS_5                            9                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(15Q21.1) MUTATED        1      4      4      5      5      7
  DEL PEAK 23(15Q21.1) WILD-TYPE      5      6      3      4      4      1
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 23(15Q21.1) MUTATED        3      5      0
  DEL PEAK 23(15Q21.1) WILD-TYPE      6      3      3
D45V2, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            4                              6
  CLUS_3                            4                              3
  CLUS_4                            5                              4
  CLUS_5                            5                              4
  CLUS_6                            7                              1
  CLUS_7                            3                              6
  CLUS_8                            5                              3
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(15Q21.1) MUTATED       14     23     14     25      3
  DEL PEAK 23(15Q21.1) WILD-TYPE     12     17     13     17     27
D45V3, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           14                             12
  CLUS_2                           23                             17
  CLUS_3                           14                             13
  CLUS_4                           25                             17
  CLUS_5                            3                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(15Q21.1) MUTATED        5     12      9     13      7
  DEL PEAK 23(15Q21.1) WILD-TYPE      9     11      8     12     10
D45V4, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                           12                             11
  CLUS_3                            9                              8
  CLUS_4                           13                             12
  CLUS_5                            7                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(15Q21.1) MUTATED       24     12      8     12      3
  DEL PEAK 23(15Q21.1) WILD-TYPE     18     15     17     18      0
D45V5, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           24                             18
  CLUS_2                           12                             15
  CLUS_3                            8                             17
  CLUS_4                           12                             18
  CLUS_5                            3                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(15Q21.1) MUTATED        8      8     10      9     14     10
  DEL PEAK 23(15Q21.1) WILD-TYPE     12     12     14      9     15      6
D45V6, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                            8                             12
  CLUS_2                            8                             12
  CLUS_3                           10                             14
  CLUS_4                            9                              9
  CLUS_5                           14                             15
  CLUS_6                           10                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(15Q21.1) MUTATED       12      5     16     17     29
  DEL PEAK 23(15Q21.1) WILD-TYPE     20      9     17     11     28
D45V7, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           12                             20
  CLUS_2                            5                              9
  CLUS_3                           16                             17
  CLUS_4                           17                             11
  CLUS_5                           29                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(15Q21.1) MUTATED       17     15      4     10     16      6
  DEL PEAK 23(15Q21.1) WILD-TYPE     10     21      8      9     16     12
                                vv
clus                             CLUS_7
  DEL PEAK 23(15Q21.1) MUTATED       11
  DEL PEAK 23(15Q21.1) WILD-TYPE      9
D45V8, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           17                             10
  CLUS_2                           15                             21
  CLUS_3                            4                              8
  CLUS_4                           10                              9
  CLUS_5                           16                             16
  CLUS_6                            6                             12
  CLUS_7                           11                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q21.1) MUTATED        9     29     29
  DEL PEAK 23(15Q21.1) WILD-TYPE     15     26     33
D45V9, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                            9                             15
  CLUS_2                           29                             26
  CLUS_3                           29                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q21.1) MUTATED       13     30     24
  DEL PEAK 23(15Q21.1) WILD-TYPE      9     33     32
D45V10, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           13                              9
  CLUS_2                           30                             33
  CLUS_3                           24                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(15Q21.1) MUTATED        8     10      8      2
  DEL PEAK 23(15Q21.1) WILD-TYPE      9      4      5      4
D45V11, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                            8                              9
  CLUS_2                           10                              4
  CLUS_3                            8                              5
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(15Q21.1) MUTATED        6      7     10      4      1
  DEL PEAK 23(15Q21.1) WILD-TYPE      5      5      6      2      4
D45V12, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                            6                              5
  CLUS_2                            7                              5
  CLUS_3                           10                              6
  CLUS_4                            4                              2
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 24(15Q22.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(15Q22.33) MUTATED        3      6      7      8      9
  DEL PEAK 24(15Q22.33) WILD-TYPE     10      2     13      5      6
D46V1, multiclass
        clus
vv       DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  CLUS_1                             3                              10
  CLUS_2                             6                               2
  CLUS_3                             7                              13
  CLUS_4                             8                               5
  CLUS_5                             9                               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(15Q22.33) MUTATED        1      4      3      5      4      7
  DEL PEAK 24(15Q22.33) WILD-TYPE      5      6      4      4      5      1
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 24(15Q22.33) MUTATED        4      5      0
  DEL PEAK 24(15Q22.33) WILD-TYPE      5      3      3
D46V2, multiclass
        clus
vv       DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  CLUS_1                             1                               5
  CLUS_2                             4                               6
  CLUS_3                             3                               4
  CLUS_4                             5                               4
  CLUS_5                             4                               5
  CLUS_6                             7                               1
  CLUS_7                             4                               5
  CLUS_8                             5                               3
  CLUS_9                             0                               3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(15Q22.33) MUTATED       15     22     14     24      2
  DEL PEAK 24(15Q22.33) WILD-TYPE     11     18     13     18     28
D46V3, multiclass
        clus
vv       DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  CLUS_1                            15                              11
  CLUS_2                            22                              18
  CLUS_3                            14                              13
  CLUS_4                            24                              18
  CLUS_5                             2                              28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(15Q22.33) MUTATED        4     11     11     11      7
  DEL PEAK 24(15Q22.33) WILD-TYPE     10     12      6     14     10
D46V4, multiclass
        clus
vv       DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                            11                              12
  CLUS_3                            11                               6
  CLUS_4                            11                              14
  CLUS_5                             7                              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(15Q22.33) MUTATED       23     13      8     12      3
  DEL PEAK 24(15Q22.33) WILD-TYPE     19     14     17     18      0
D46V5, multiclass
        clus
vv       DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  CLUS_1                            23                              19
  CLUS_2                            13                              14
  CLUS_3                             8                              17
  CLUS_4                            12                              18
  CLUS_5                             3                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(15Q22.33) MUTATED        7      8     11      8     13     12
  DEL PEAK 24(15Q22.33) WILD-TYPE     13     12     13     10     16      4
D46V6, multiclass
        clus
vv       DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  CLUS_1                             7                              13
  CLUS_2                             8                              12
  CLUS_3                            11                              13
  CLUS_4                             8                              10
  CLUS_5                            13                              16
  CLUS_6                            12                               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(15Q22.33) MUTATED       15      3     15     15     29
  DEL PEAK 24(15Q22.33) WILD-TYPE     17     11     18     13     28
D46V7, multiclass
        clus
vv       DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  CLUS_1                            15                              17
  CLUS_2                             3                              11
  CLUS_3                            15                              18
  CLUS_4                            15                              13
  CLUS_5                            29                              28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(15Q22.33) MUTATED       19     13      4      8     14      7
  DEL PEAK 24(15Q22.33) WILD-TYPE      8     23      8     11     18     11
                                 vv
clus                              CLUS_7
  DEL PEAK 24(15Q22.33) MUTATED       12
  DEL PEAK 24(15Q22.33) WILD-TYPE      8
D46V8, multiclass
        clus
vv       DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  CLUS_1                            19                               8
  CLUS_2                            13                              23
  CLUS_3                             4                               8
  CLUS_4                             8                              11
  CLUS_5                            14                              18
  CLUS_6                             7                              11
  CLUS_7                            12                               8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(15Q22.33) MUTATED       10     27     29
  DEL PEAK 24(15Q22.33) WILD-TYPE     14     28     33
D46V9, multiclass
        clus
vv       DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  CLUS_1                            10                              14
  CLUS_2                            27                              28
  CLUS_3                            29                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(15Q22.33) MUTATED       12     29     25
  DEL PEAK 24(15Q22.33) WILD-TYPE     10     34     31
D46V10, multiclass
        clus
vv       DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  CLUS_1                            12                              10
  CLUS_2                            29                              34
  CLUS_3                            25                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(15Q22.33) MUTATED        9      9      7      2
  DEL PEAK 24(15Q22.33) WILD-TYPE      8      5      6      4
D46V11, multiclass
        clus
vv       DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  CLUS_1                             9                               8
  CLUS_2                             9                               5
  CLUS_3                             7                               6
  CLUS_4                             2                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(15Q22.33) MUTATED        5      8     10      3      1
  DEL PEAK 24(15Q22.33) WILD-TYPE      6      4      6      3      4
D46V12, multiclass
        clus
vv       DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  CLUS_1                             5                               6
  CLUS_2                             8                               4
  CLUS_3                            10                               6
  CLUS_4                             3                               3
  CLUS_5                             1                               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 25(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(16P13.3) MUTATED        0      1      2      4      1
  DEL PEAK 25(16P13.3) WILD-TYPE     13      7     18      9     14
D47V1, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            1                              7
  CLUS_3                            2                             18
  CLUS_4                            4                              9
  CLUS_5                            1                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(16P13.3) MUTATED        1      0      0      1      1      2
  DEL PEAK 25(16P13.3) WILD-TYPE      5     10      7      8      8      6
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 25(16P13.3) MUTATED        1      2      0
  DEL PEAK 25(16P13.3) WILD-TYPE      8      6      3
D47V2, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            0                             10
  CLUS_3                            0                              7
  CLUS_4                            1                              8
  CLUS_5                            1                              8
  CLUS_6                            2                              6
  CLUS_7                            1                              8
  CLUS_8                            2                              6
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(16P13.3) MUTATED        2      1      2      7      2
  DEL PEAK 25(16P13.3) WILD-TYPE     24     39     25     35     28
D47V3, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                            2                             24
  CLUS_2                            1                             39
  CLUS_3                            2                             25
  CLUS_4                            7                             35
  CLUS_5                            2                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(16P13.3) MUTATED        1      0      1      4      0
  DEL PEAK 25(16P13.3) WILD-TYPE     13     23     16     21     17
D47V4, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            0                             23
  CLUS_3                            1                             16
  CLUS_4                            4                             21
  CLUS_5                            0                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(16P13.3) MUTATED        3      3      4      1      0
  DEL PEAK 25(16P13.3) WILD-TYPE     39     24     21     29      3
D47V5, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                            3                             24
  CLUS_3                            4                             21
  CLUS_4                            1                             29
  CLUS_5                            0                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(16P13.3) MUTATED        2      1      2      3      3      0
  DEL PEAK 25(16P13.3) WILD-TYPE     18     19     22     15     26     16
D47V6, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                            2                             18
  CLUS_2                            1                             19
  CLUS_3                            2                             22
  CLUS_4                            3                             15
  CLUS_5                            3                             26
  CLUS_6                            0                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(16P13.3) MUTATED        1      0      6      2      5
  DEL PEAK 25(16P13.3) WILD-TYPE     31     14     27     26     52
D47V7, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                            1                             31
  CLUS_2                            0                             14
  CLUS_3                            6                             27
  CLUS_4                            2                             26
  CLUS_5                            5                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(16P13.3) MUTATED        1      3      1      1      4      2
  DEL PEAK 25(16P13.3) WILD-TYPE     26     33     11     18     28     16
                                vv
clus                             CLUS_7
  DEL PEAK 25(16P13.3) MUTATED        2
  DEL PEAK 25(16P13.3) WILD-TYPE     18
D47V8, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                            1                             26
  CLUS_2                            3                             33
  CLUS_3                            1                             11
  CLUS_4                            1                             18
  CLUS_5                            4                             28
  CLUS_6                            2                             16
  CLUS_7                            2                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(16P13.3) MUTATED        0      4      8
  DEL PEAK 25(16P13.3) WILD-TYPE     24     51     54
D47V9, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                            0                             24
  CLUS_2                            4                             51
  CLUS_3                            8                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(16P13.3) MUTATED        1      4      7
  DEL PEAK 25(16P13.3) WILD-TYPE     21     59     49
D47V10, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                            1                             21
  CLUS_2                            4                             59
  CLUS_3                            7                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(16P13.3) MUTATED        1      2      0      0
  DEL PEAK 25(16P13.3) WILD-TYPE     16     12     13      6
D47V11, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                            1                             16
  CLUS_2                            2                             12
  CLUS_3                            0                             13
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(16P13.3) MUTATED        1      0      1      0      1
  DEL PEAK 25(16P13.3) WILD-TYPE     10     12     15      6      4
D47V12, multiclass
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  CLUS_1                            1                             10
  CLUS_2                            0                             12
  CLUS_3                            1                             15
  CLUS_4                            0                              6
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 26(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q23.1) MUTATED        0      1      1      5      1
  DEL PEAK 26(16Q23.1) WILD-TYPE     13      7     19      8     14
D48V1, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            1                              7
  CLUS_3                            1                             19
  CLUS_4                            5                              8
  CLUS_5                            1                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(16Q23.1) MUTATED        1      0      0      1      1      1
  DEL PEAK 26(16Q23.1) WILD-TYPE      5     10      7      8      8      7
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 26(16Q23.1) MUTATED        1      3      0
  DEL PEAK 26(16Q23.1) WILD-TYPE      8      5      3
D48V2, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            0                             10
  CLUS_3                            0                              7
  CLUS_4                            1                              8
  CLUS_5                            1                              8
  CLUS_6                            1                              7
  CLUS_7                            1                              8
  CLUS_8                            3                              5
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q23.1) MUTATED        6      2      1     12      2
  DEL PEAK 26(16Q23.1) WILD-TYPE     20     38     26     30     28
D48V3, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                            6                             20
  CLUS_2                            2                             38
  CLUS_3                            1                             26
  CLUS_4                           12                             30
  CLUS_5                            2                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q23.1) MUTATED        3      2      2      6      2
  DEL PEAK 26(16Q23.1) WILD-TYPE     11     21     15     19     15
D48V4, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            2                             21
  CLUS_3                            2                             15
  CLUS_4                            6                             19
  CLUS_5                            2                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q23.1) MUTATED        4      5      5      2      0
  DEL PEAK 26(16Q23.1) WILD-TYPE     38     22     20     28      3
D48V5, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                            4                             38
  CLUS_2                            5                             22
  CLUS_3                            5                             20
  CLUS_4                            2                             28
  CLUS_5                            0                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(16Q23.1) MUTATED        3      2      2      5      3      1
  DEL PEAK 26(16Q23.1) WILD-TYPE     17     18     22     13     26     15
D48V6, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                            3                             17
  CLUS_2                            2                             18
  CLUS_3                            2                             22
  CLUS_4                            5                             13
  CLUS_5                            3                             26
  CLUS_6                            1                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q23.1) MUTATED        5      1      8      3      6
  DEL PEAK 26(16Q23.1) WILD-TYPE     27     13     25     25     51
D48V7, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                            5                             27
  CLUS_2                            1                             13
  CLUS_3                            8                             25
  CLUS_4                            3                             25
  CLUS_5                            6                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(16Q23.1) MUTATED        4      7      3      1      4      2
  DEL PEAK 26(16Q23.1) WILD-TYPE     23     29      9     18     28     16
                                vv
clus                             CLUS_7
  DEL PEAK 26(16Q23.1) MUTATED        2
  DEL PEAK 26(16Q23.1) WILD-TYPE     18
D48V8, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                            4                             23
  CLUS_2                            7                             29
  CLUS_3                            3                              9
  CLUS_4                            1                             18
  CLUS_5                            4                             28
  CLUS_6                            2                             16
  CLUS_7                            2                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED        3      8      8
  DEL PEAK 26(16Q23.1) WILD-TYPE     21     47     54
D48V9, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                            3                             21
  CLUS_2                            8                             47
  CLUS_3                            8                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED        2     10      7
  DEL PEAK 26(16Q23.1) WILD-TYPE     20     53     49
D48V10, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                            2                             20
  CLUS_2                           10                             53
  CLUS_3                            7                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(16Q23.1) MUTATED        3      3      3      0
  DEL PEAK 26(16Q23.1) WILD-TYPE     14     11     10      6
D48V11, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                            3                             14
  CLUS_2                            3                             11
  CLUS_3                            3                             10
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q23.1) MUTATED        1      2      4      1      1
  DEL PEAK 26(16Q23.1) WILD-TYPE     10     10     12      5      4
D48V12, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                            1                             10
  CLUS_2                            2                             10
  CLUS_3                            4                             12
  CLUS_4                            1                              5
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 27(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17P11.2) MUTATED        7      8     13      7     13
  DEL PEAK 27(17P11.2) WILD-TYPE      6      0      7      6      2
D49V1, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                            7                              6
  CLUS_2                            8                              0
  CLUS_3                           13                              7
  CLUS_4                            7                              6
  CLUS_5                           13                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(17P11.2) MUTATED        3      8      5      6      8      6
  DEL PEAK 27(17P11.2) WILD-TYPE      3      2      2      3      1      2
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 27(17P11.2) MUTATED        5      5      2
  DEL PEAK 27(17P11.2) WILD-TYPE      4      3      1
D49V2, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            8                              2
  CLUS_3                            5                              2
  CLUS_4                            6                              3
  CLUS_5                            8                              1
  CLUS_6                            6                              2
  CLUS_7                            5                              4
  CLUS_8                            5                              3
  CLUS_9                            2                              1
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17P11.2) MUTATED       19     26     21     35     12
  DEL PEAK 27(17P11.2) WILD-TYPE      7     14      6      7     18
D49V3, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                           19                              7
  CLUS_2                           26                             14
  CLUS_3                           21                              6
  CLUS_4                           35                              7
  CLUS_5                           12                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17P11.2) MUTATED        8     14     13     19     12
  DEL PEAK 27(17P11.2) WILD-TYPE      6      9      4      6      5
D49V4, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                            8                              6
  CLUS_2                           14                              9
  CLUS_3                           13                              4
  CLUS_4                           19                              6
  CLUS_5                           12                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17P11.2) MUTATED       27     18     17     23      3
  DEL PEAK 27(17P11.2) WILD-TYPE     15      9      8      7      0
D49V5, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                           27                             15
  CLUS_2                           18                              9
  CLUS_3                           17                              8
  CLUS_4                           23                              7
  CLUS_5                            3                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(17P11.2) MUTATED       15     13     19     14     15     12
  DEL PEAK 27(17P11.2) WILD-TYPE      5      7      5      4     14      4
D49V6, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                           15                              5
  CLUS_2                           13                              7
  CLUS_3                           19                              5
  CLUS_4                           14                              4
  CLUS_5                           15                             14
  CLUS_6                           12                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17P11.2) MUTATED       23     11     18     17     43
  DEL PEAK 27(17P11.2) WILD-TYPE      9      3     15     11     14
D49V7, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                           23                              9
  CLUS_2                           11                              3
  CLUS_3                           18                             15
  CLUS_4                           17                             11
  CLUS_5                           43                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(17P11.2) MUTATED       21     24     10     10     22      9
  DEL PEAK 27(17P11.2) WILD-TYPE      6     12      2      9     10      9
                                vv
clus                             CLUS_7
  DEL PEAK 27(17P11.2) MUTATED       16
  DEL PEAK 27(17P11.2) WILD-TYPE      4
D49V8, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                           21                              6
  CLUS_2                           24                             12
  CLUS_3                           10                              2
  CLUS_4                           10                              9
  CLUS_5                           22                             10
  CLUS_6                            9                              9
  CLUS_7                           16                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17P11.2) MUTATED       15     37     44
  DEL PEAK 27(17P11.2) WILD-TYPE      9     18     18
D49V9, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                           15                              9
  CLUS_2                           37                             18
  CLUS_3                           44                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17P11.2) MUTATED       18     41     37
  DEL PEAK 27(17P11.2) WILD-TYPE      4     22     19
D49V10, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                           18                              4
  CLUS_2                           41                             22
  CLUS_3                           37                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(17P11.2) MUTATED       11      9      9      3
  DEL PEAK 27(17P11.2) WILD-TYPE      6      5      4      3
D49V11, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                           11                              6
  CLUS_2                            9                              5
  CLUS_3                            9                              4
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17P11.2) MUTATED        8      8     10      3      3
  DEL PEAK 27(17P11.2) WILD-TYPE      3      4      6      3      2
D49V12, multiclass
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  CLUS_1                            8                              3
  CLUS_2                            8                              4
  CLUS_3                           10                              6
  CLUS_4                            3                              3
  CLUS_5                            3                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 28(18P11.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(18P11.31) MUTATED        6      7     13      9     14
  DEL PEAK 28(18P11.31) WILD-TYPE      7      1      7      4      1
D50V1, multiclass
        clus
vv       DEL PEAK 28(18P11.31) MUTATED DEL PEAK 28(18P11.31) WILD-TYPE
  CLUS_1                             6                               7
  CLUS_2                             7                               1
  CLUS_3                            13                               7
  CLUS_4                             9                               4
  CLUS_5                            14                               1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(18P11.31) MUTATED        4      7      3      6      8      7
  DEL PEAK 28(18P11.31) WILD-TYPE      2      3      4      3      1      1
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 28(18P11.31) MUTATED        7      6      1
  DEL PEAK 28(18P11.31) WILD-TYPE      2      2      2
D50V2, multiclass
        clus
vv       DEL PEAK 28(18P11.31) MUTATED DEL PEAK 28(18P11.31) WILD-TYPE
  CLUS_1                             4                               2
  CLUS_2                             7                               3
  CLUS_3                             3                               4
  CLUS_4                             6                               3
  CLUS_5                             8                               1
  CLUS_6                             7                               1
  CLUS_7                             7                               2
  CLUS_8                             6                               2
  CLUS_9                             1                               2
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(18P11.31) MUTATED       21     39     21     32     12
  DEL PEAK 28(18P11.31) WILD-TYPE      5      1      6     10     18
D50V3, multiclass
        clus
vv       DEL PEAK 28(18P11.31) MUTATED DEL PEAK 28(18P11.31) WILD-TYPE
  CLUS_1                            21                               5
  CLUS_2                            39                               1
  CLUS_3                            21                               6
  CLUS_4                            32                              10
  CLUS_5                            12                              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(18P11.31) MUTATED        7     20     17     19     14
  DEL PEAK 28(18P11.31) WILD-TYPE      7      3      0      6      3
D50V4, multiclass
        clus
vv       DEL PEAK 28(18P11.31) MUTATED DEL PEAK 28(18P11.31) WILD-TYPE
  CLUS_1                             7                               7
  CLUS_2                            20                               3
  CLUS_3                            17                               0
  CLUS_4                            19                               6
  CLUS_5                            14                               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(18P11.31) MUTATED       28     22     16     25      3
  DEL PEAK 28(18P11.31) WILD-TYPE     14      5      9      5      0
D50V5, multiclass
        clus
vv       DEL PEAK 28(18P11.31) MUTATED DEL PEAK 28(18P11.31) WILD-TYPE
  CLUS_1                            28                              14
  CLUS_2                            22                               5
  CLUS_3                            16                               9
  CLUS_4                            25                               5
  CLUS_5                             3                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(18P11.31) MUTATED       14     17     18     15     17     13
  DEL PEAK 28(18P11.31) WILD-TYPE      6      3      6      3     12      3
D50V6, multiclass
        clus
vv       DEL PEAK 28(18P11.31) MUTATED DEL PEAK 28(18P11.31) WILD-TYPE
  CLUS_1                            14                               6
  CLUS_2                            17                               3
  CLUS_3                            18                               6
  CLUS_4                            15                               3
  CLUS_5                            17                              12
  CLUS_6                            13                               3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(18P11.31) MUTATED       28     10     19     24     43
  DEL PEAK 28(18P11.31) WILD-TYPE      4      4     14      4     14
D50V7, multiclass
        clus
vv       DEL PEAK 28(18P11.31) MUTATED DEL PEAK 28(18P11.31) WILD-TYPE
  CLUS_1                            28                               4
  CLUS_2                            10                               4
  CLUS_3                            19                              14
  CLUS_4                            24                               4
  CLUS_5                            43                              14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(18P11.31) MUTATED       26     26      7     17     24      9
  DEL PEAK 28(18P11.31) WILD-TYPE      1     10      5      2      8      9
                                 vv
clus                              CLUS_7
  DEL PEAK 28(18P11.31) MUTATED       15
  DEL PEAK 28(18P11.31) WILD-TYPE      5
D50V8, multiclass
        clus
vv       DEL PEAK 28(18P11.31) MUTATED DEL PEAK 28(18P11.31) WILD-TYPE
  CLUS_1                            26                               1
  CLUS_2                            26                              10
  CLUS_3                             7                               5
  CLUS_4                            17                               2
  CLUS_5                            24                               8
  CLUS_6                             9                               9
  CLUS_7                            15                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18P11.31) MUTATED       18     46     43
  DEL PEAK 28(18P11.31) WILD-TYPE      6      9     19
D50V9, multiclass
        clus
vv       DEL PEAK 28(18P11.31) MUTATED DEL PEAK 28(18P11.31) WILD-TYPE
  CLUS_1                            18                               6
  CLUS_2                            46                               9
  CLUS_3                            43                              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18P11.31) MUTATED       18     51     38
  DEL PEAK 28(18P11.31) WILD-TYPE      4     12     18
D50V10, multiclass
        clus
vv       DEL PEAK 28(18P11.31) MUTATED DEL PEAK 28(18P11.31) WILD-TYPE
  CLUS_1                            18                               4
  CLUS_2                            51                              12
  CLUS_3                            38                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18P11.31) MUTATED       15     11     11      6
  DEL PEAK 28(18P11.31) WILD-TYPE      2      3      2      0
D50V11, multiclass
        clus
vv       DEL PEAK 28(18P11.31) MUTATED DEL PEAK 28(18P11.31) WILD-TYPE
  CLUS_1                            15                               2
  CLUS_2                            11                               3
  CLUS_3                            11                               2
  CLUS_4                             6                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(18P11.31) MUTATED       11     10     12      6      4
  DEL PEAK 28(18P11.31) WILD-TYPE      0      2      4      0      1
D50V12, multiclass
        clus
vv       DEL PEAK 28(18P11.31) MUTATED DEL PEAK 28(18P11.31) WILD-TYPE
  CLUS_1                            11                               0
  CLUS_2                            10                               2
  CLUS_3                            12                               4
  CLUS_4                             6                               0
  CLUS_5                             4                               1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 29(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(18Q21.2) MUTATED        9      8     17     11     15
  DEL PEAK 29(18Q21.2) WILD-TYPE      4      0      3      2      0
D51V1, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                            9                              4
  CLUS_2                            8                              0
  CLUS_3                           17                              3
  CLUS_4                           11                              2
  CLUS_5                           15                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(18Q21.2) MUTATED        4      9      5      8      9      8
  DEL PEAK 29(18Q21.2) WILD-TYPE      2      1      2      1      0      0
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 29(18Q21.2) MUTATED        8      7      2
  DEL PEAK 29(18Q21.2) WILD-TYPE      1      1      1
D51V2, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            9                              1
  CLUS_3                            5                              2
  CLUS_4                            8                              1
  CLUS_5                            9                              0
  CLUS_6                            8                              0
  CLUS_7                            8                              1
  CLUS_8                            7                              1
  CLUS_9                            2                              1
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(18Q21.2) MUTATED       22     40     26     42     15
  DEL PEAK 29(18Q21.2) WILD-TYPE      4      0      1      0     15
D51V3, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           22                              4
  CLUS_2                           40                              0
  CLUS_3                           26                              1
  CLUS_4                           42                              0
  CLUS_5                           15                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(18Q21.2) MUTATED       10     20     17     22     17
  DEL PEAK 29(18Q21.2) WILD-TYPE      4      3      0      3      0
D51V4, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           10                              4
  CLUS_2                           20                              3
  CLUS_3                           17                              0
  CLUS_4                           22                              3
  CLUS_5                           17                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(18Q21.2) MUTATED       37     24     22     26      3
  DEL PEAK 29(18Q21.2) WILD-TYPE      5      3      3      4      0
D51V5, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           37                              5
  CLUS_2                           24                              3
  CLUS_3                           22                              3
  CLUS_4                           26                              4
  CLUS_5                            3                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(18Q21.2) MUTATED       17     17     22     18     22     16
  DEL PEAK 29(18Q21.2) WILD-TYPE      3      3      2      0      7      0
D51V6, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           17                              3
  CLUS_2                           17                              3
  CLUS_3                           22                              2
  CLUS_4                           18                              0
  CLUS_5                           22                              7
  CLUS_6                           16                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(18Q21.2) MUTATED       30     13     22     26     53
  DEL PEAK 29(18Q21.2) WILD-TYPE      2      1     11      2      4
D51V7, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           30                              2
  CLUS_2                           13                              1
  CLUS_3                           22                             11
  CLUS_4                           26                              2
  CLUS_5                           53                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(18Q21.2) MUTATED       27     32      8     17     29     13
  DEL PEAK 29(18Q21.2) WILD-TYPE      0      4      4      2      3      5
                                vv
clus                             CLUS_7
  DEL PEAK 29(18Q21.2) MUTATED       18
  DEL PEAK 29(18Q21.2) WILD-TYPE      2
D51V8, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           27                              0
  CLUS_2                           32                              4
  CLUS_3                            8                              4
  CLUS_4                           17                              2
  CLUS_5                           29                              3
  CLUS_6                           13                              5
  CLUS_7                           18                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(18Q21.2) MUTATED       20     52     54
  DEL PEAK 29(18Q21.2) WILD-TYPE      4      3      8
D51V9, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           20                              4
  CLUS_2                           52                              3
  CLUS_3                           54                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(18Q21.2) MUTATED       22     57     47
  DEL PEAK 29(18Q21.2) WILD-TYPE      0      6      9
D51V10, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           22                              0
  CLUS_2                           57                              6
  CLUS_3                           47                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(18Q21.2) MUTATED       16     12     12      6
  DEL PEAK 29(18Q21.2) WILD-TYPE      1      2      1      0
D51V11, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           16                              1
  CLUS_2                           12                              2
  CLUS_3                           12                              1
  CLUS_4                            6                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(18Q21.2) MUTATED       11     10     14      6      5
  DEL PEAK 29(18Q21.2) WILD-TYPE      0      2      2      0      0
D51V12, multiclass
        clus
vv       DEL PEAK 29(18Q21.2) MUTATED DEL PEAK 29(18Q21.2) WILD-TYPE
  CLUS_1                           11                              0
  CLUS_2                           10                              2
  CLUS_3                           14                              2
  CLUS_4                            6                              0
  CLUS_5                            5                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 30(18Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(18Q22.1) MUTATED        9      8     16     11     15
  DEL PEAK 30(18Q22.1) WILD-TYPE      4      0      4      2      0
D52V1, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                            9                              4
  CLUS_2                            8                              0
  CLUS_3                           16                              4
  CLUS_4                           11                              2
  CLUS_5                           15                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(18Q22.1) MUTATED        4      9      5      8      9      8
  DEL PEAK 30(18Q22.1) WILD-TYPE      2      1      2      1      0      0
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 30(18Q22.1) MUTATED        8      7      1
  DEL PEAK 30(18Q22.1) WILD-TYPE      1      1      2
D52V2, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            9                              1
  CLUS_3                            5                              2
  CLUS_4                            8                              1
  CLUS_5                            9                              0
  CLUS_6                            8                              0
  CLUS_7                            8                              1
  CLUS_8                            7                              1
  CLUS_9                            1                              2
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(18Q22.1) MUTATED       20     40     26     41     14
  DEL PEAK 30(18Q22.1) WILD-TYPE      6      0      1      1     16
D52V3, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           20                              6
  CLUS_2                           40                              0
  CLUS_3                           26                              1
  CLUS_4                           41                              1
  CLUS_5                           14                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(18Q22.1) MUTATED        8     20     17     22     16
  DEL PEAK 30(18Q22.1) WILD-TYPE      6      3      0      3      1
D52V4, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                            8                              6
  CLUS_2                           20                              3
  CLUS_3                           17                              0
  CLUS_4                           22                              3
  CLUS_5                           16                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(18Q22.1) MUTATED       36     24     20     25      3
  DEL PEAK 30(18Q22.1) WILD-TYPE      6      3      5      5      0
D52V5, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           36                              6
  CLUS_2                           24                              3
  CLUS_3                           20                              5
  CLUS_4                           25                              5
  CLUS_5                            3                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(18Q22.1) MUTATED       16     17     22     16     21     16
  DEL PEAK 30(18Q22.1) WILD-TYPE      4      3      2      2      8      0
D52V6, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           16                              4
  CLUS_2                           17                              3
  CLUS_3                           22                              2
  CLUS_4                           16                              2
  CLUS_5                           21                              8
  CLUS_6                           16                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(18Q22.1) MUTATED       28     12     22     26     52
  DEL PEAK 30(18Q22.1) WILD-TYPE      4      2     11      2      5
D52V7, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           28                              4
  CLUS_2                           12                              2
  CLUS_3                           22                             11
  CLUS_4                           26                              2
  CLUS_5                           52                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(18Q22.1) MUTATED       27     30      7     17     29     13
  DEL PEAK 30(18Q22.1) WILD-TYPE      0      6      5      2      3      5
                                vv
clus                             CLUS_7
  DEL PEAK 30(18Q22.1) MUTATED       17
  DEL PEAK 30(18Q22.1) WILD-TYPE      3
D52V8, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           27                              0
  CLUS_2                           30                              6
  CLUS_3                            7                              5
  CLUS_4                           17                              2
  CLUS_5                           29                              3
  CLUS_6                           13                              5
  CLUS_7                           17                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q22.1) MUTATED       18     51     53
  DEL PEAK 30(18Q22.1) WILD-TYPE      6      4      9
D52V9, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           18                              6
  CLUS_2                           51                              4
  CLUS_3                           53                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q22.1) MUTATED       21     55     46
  DEL PEAK 30(18Q22.1) WILD-TYPE      1      8     10
D52V10, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           21                              1
  CLUS_2                           55                              8
  CLUS_3                           46                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(18Q22.1) MUTATED       15     11     12      6
  DEL PEAK 30(18Q22.1) WILD-TYPE      2      3      1      0
D52V11, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           15                              2
  CLUS_2                           11                              3
  CLUS_3                           12                              1
  CLUS_4                            6                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(18Q22.1) MUTATED        9     10     14      6      5
  DEL PEAK 30(18Q22.1) WILD-TYPE      2      2      2      0      0
D52V12, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                            9                              2
  CLUS_2                           10                              2
  CLUS_3                           14                              2
  CLUS_4                            6                              0
  CLUS_5                            5                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 31(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(18Q23) MUTATED        9      8     16     11     14
  DEL PEAK 31(18Q23) WILD-TYPE      4      0      4      2      1
D53V1, multiclass
        clus
vv       DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE
  CLUS_1                          9                            4
  CLUS_2                          8                            0
  CLUS_3                         16                            4
  CLUS_4                         11                            2
  CLUS_5                         14                            1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 31(18Q23) MUTATED        4      9      5      8      9      7      8
  DEL PEAK 31(18Q23) WILD-TYPE      2      1      2      1      0      1      1
                              vv
clus                           CLUS_8 CLUS_9
  DEL PEAK 31(18Q23) MUTATED        7      1
  DEL PEAK 31(18Q23) WILD-TYPE      1      2
D53V2, multiclass
        clus
vv       DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE
  CLUS_1                          4                            2
  CLUS_2                          9                            1
  CLUS_3                          5                            2
  CLUS_4                          8                            1
  CLUS_5                          9                            0
  CLUS_6                          7                            1
  CLUS_7                          8                            1
  CLUS_8                          7                            1
  CLUS_9                          1                            2
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(18Q23) MUTATED       20     39     26     41     15
  DEL PEAK 31(18Q23) WILD-TYPE      6      1      1      1     15
D53V3, multiclass
        clus
vv       DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE
  CLUS_1                         20                            6
  CLUS_2                         39                            1
  CLUS_3                         26                            1
  CLUS_4                         41                            1
  CLUS_5                         15                           15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(18Q23) MUTATED        9     20     17     22     16
  DEL PEAK 31(18Q23) WILD-TYPE      5      3      0      3      1
D53V4, multiclass
        clus
vv       DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE
  CLUS_1                          9                            5
  CLUS_2                         20                            3
  CLUS_3                         17                            0
  CLUS_4                         22                            3
  CLUS_5                         16                            1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(18Q23) MUTATED       36     24     21     25      2
  DEL PEAK 31(18Q23) WILD-TYPE      6      3      4      5      1
D53V5, multiclass
        clus
vv       DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE
  CLUS_1                         36                            6
  CLUS_2                         24                            3
  CLUS_3                         21                            4
  CLUS_4                         25                            5
  CLUS_5                          2                            1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(18Q23) MUTATED       16     17     21     17     21     16
  DEL PEAK 31(18Q23) WILD-TYPE      4      3      3      1      8      0
D53V6, multiclass
        clus
vv       DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE
  CLUS_1                         16                            4
  CLUS_2                         17                            3
  CLUS_3                         21                            3
  CLUS_4                         17                            1
  CLUS_5                         21                            8
  CLUS_6                         16                            0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(18Q23) MUTATED       29     12     22     26     51
  DEL PEAK 31(18Q23) WILD-TYPE      3      2     11      2      6
D53V7, multiclass
        clus
vv       DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE
  CLUS_1                         29                            3
  CLUS_2                         12                            2
  CLUS_3                         22                           11
  CLUS_4                         26                            2
  CLUS_5                         51                            6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 31(18Q23) MUTATED       27     30      8     17     29     13     16
  DEL PEAK 31(18Q23) WILD-TYPE      0      6      4      2      3      5      4
D53V8, multiclass
        clus
vv       DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE
  CLUS_1                         27                            0
  CLUS_2                         30                            6
  CLUS_3                          8                            4
  CLUS_4                         17                            2
  CLUS_5                         29                            3
  CLUS_6                         13                            5
  CLUS_7                         16                            4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(18Q23) MUTATED       19     51     52
  DEL PEAK 31(18Q23) WILD-TYPE      5      4     10
D53V9, multiclass
        clus
vv       DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE
  CLUS_1                         19                            5
  CLUS_2                         51                            4
  CLUS_3                         52                           10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(18Q23) MUTATED       20     56     46
  DEL PEAK 31(18Q23) WILD-TYPE      2      7     10
D53V10, multiclass
        clus
vv       DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE
  CLUS_1                         20                            2
  CLUS_2                         56                            7
  CLUS_3                         46                           10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(18Q23) MUTATED       15     11     12      6
  DEL PEAK 31(18Q23) WILD-TYPE      2      3      1      0
D53V11, multiclass
        clus
vv       DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE
  CLUS_1                         15                            2
  CLUS_2                         11                            3
  CLUS_3                         12                            1
  CLUS_4                          6                            0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(18Q23) MUTATED        9     10     14      6      5
  DEL PEAK 31(18Q23) WILD-TYPE      2      2      2      0      0
D53V12, multiclass
        clus
vv       DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE
  CLUS_1                          9                            2
  CLUS_2                         10                            2
  CLUS_3                         14                            2
  CLUS_4                          6                            0
  CLUS_5                          5                            0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 32(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(19P13.3) MUTATED        2      1      3      3      3
  DEL PEAK 32(19P13.3) WILD-TYPE     11      7     17     10     12
D54V1, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                            2                             11
  CLUS_2                            1                              7
  CLUS_3                            3                             17
  CLUS_4                            3                             10
  CLUS_5                            3                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(19P13.3) MUTATED        1      3      0      2      3      1
  DEL PEAK 32(19P13.3) WILD-TYPE      5      7      7      7      6      7
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 32(19P13.3) MUTATED        1      1      0
  DEL PEAK 32(19P13.3) WILD-TYPE      8      7      3
D54V2, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            3                              7
  CLUS_3                            0                              7
  CLUS_4                            2                              7
  CLUS_5                            3                              6
  CLUS_6                            1                              7
  CLUS_7                            1                              8
  CLUS_8                            1                              7
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(19P13.3) MUTATED        6     10      9      9      2
  DEL PEAK 32(19P13.3) WILD-TYPE     20     30     18     33     28
D54V3, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                            6                             20
  CLUS_2                           10                             30
  CLUS_3                            9                             18
  CLUS_4                            9                             33
  CLUS_5                            2                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(19P13.3) MUTATED        5      4      7      3      5
  DEL PEAK 32(19P13.3) WILD-TYPE      9     19     10     22     12
D54V4, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                            4                             19
  CLUS_3                            7                             10
  CLUS_4                            3                             22
  CLUS_5                            5                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(19P13.3) MUTATED       10      6      5      4      1
  DEL PEAK 32(19P13.3) WILD-TYPE     32     21     20     26      2
D54V5, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                            6                             21
  CLUS_3                            5                             20
  CLUS_4                            4                             26
  CLUS_5                            1                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(19P13.3) MUTATED        4      5      7      3      4      3
  DEL PEAK 32(19P13.3) WILD-TYPE     16     15     17     15     25     13
D54V6, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                            4                             16
  CLUS_2                            5                             15
  CLUS_3                            7                             17
  CLUS_4                            3                             15
  CLUS_5                            4                             25
  CLUS_6                            3                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(19P13.3) MUTATED        9      3      6      5     12
  DEL PEAK 32(19P13.3) WILD-TYPE     23     11     27     23     45
D54V7, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                            9                             23
  CLUS_2                            3                             11
  CLUS_3                            6                             27
  CLUS_4                            5                             23
  CLUS_5                           12                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(19P13.3) MUTATED        6      8      3      6      6      3
  DEL PEAK 32(19P13.3) WILD-TYPE     21     28      9     13     26     15
                                vv
clus                             CLUS_7
  DEL PEAK 32(19P13.3) MUTATED        3
  DEL PEAK 32(19P13.3) WILD-TYPE     17
D54V8, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                            6                             21
  CLUS_2                            8                             28
  CLUS_3                            3                              9
  CLUS_4                            6                             13
  CLUS_5                            6                             26
  CLUS_6                            3                             15
  CLUS_7                            3                             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19P13.3) MUTATED        7     15     12
  DEL PEAK 32(19P13.3) WILD-TYPE     17     40     50
D54V9, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                           15                             40
  CLUS_3                           12                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19P13.3) MUTATED       11     15      8
  DEL PEAK 32(19P13.3) WILD-TYPE     11     48     48
D54V10, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                           11                             11
  CLUS_2                           15                             48
  CLUS_3                            8                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(19P13.3) MUTATED        6      3      6      3
  DEL PEAK 32(19P13.3) WILD-TYPE     11     11      7      3
D54V11, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                            6                             11
  CLUS_2                            3                             11
  CLUS_3                            6                              7
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(19P13.3) MUTATED        6      3      5      3      1
  DEL PEAK 32(19P13.3) WILD-TYPE      5      9     11      3      4
D54V12, multiclass
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  CLUS_1                            6                              5
  CLUS_2                            3                              9
  CLUS_3                            5                             11
  CLUS_4                            3                              3
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 33(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(20P12.1) MUTATED        2      2      7      4      4
  DEL PEAK 33(20P12.1) WILD-TYPE     11      6     13      9     11
D55V1, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            2                             11
  CLUS_2                            2                              6
  CLUS_3                            7                             13
  CLUS_4                            4                              9
  CLUS_5                            4                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(20P12.1) MUTATED        2      3      1      0      3      3
  DEL PEAK 33(20P12.1) WILD-TYPE      4      7      6      9      6      5
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 33(20P12.1) MUTATED        5      2      0
  DEL PEAK 33(20P12.1) WILD-TYPE      4      6      3
D55V2, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            3                              7
  CLUS_3                            1                              6
  CLUS_4                            0                              9
  CLUS_5                            3                              6
  CLUS_6                            3                              5
  CLUS_7                            5                              4
  CLUS_8                            2                              6
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(20P12.1) MUTATED        4     16      7     16      6
  DEL PEAK 33(20P12.1) WILD-TYPE     22     24     20     26     24
D55V3, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            4                             22
  CLUS_2                           16                             24
  CLUS_3                            7                             20
  CLUS_4                           16                             26
  CLUS_5                            6                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(20P12.1) MUTATED        4      7      7      8      5
  DEL PEAK 33(20P12.1) WILD-TYPE     10     16     10     17     12
D55V4, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            7                             16
  CLUS_3                            7                             10
  CLUS_4                            8                             17
  CLUS_5                            5                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(20P12.1) MUTATED       11      8      8     11      1
  DEL PEAK 33(20P12.1) WILD-TYPE     31     19     17     19      2
D55V5, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                            8                             19
  CLUS_3                            8                             17
  CLUS_4                           11                             19
  CLUS_5                            1                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(20P12.1) MUTATED        7      6      9      6      8      3
  DEL PEAK 33(20P12.1) WILD-TYPE     13     14     15     12     21     13
D55V6, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            7                             13
  CLUS_2                            6                             14
  CLUS_3                            9                             15
  CLUS_4                            6                             12
  CLUS_5                            8                             21
  CLUS_6                            3                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(20P12.1) MUTATED       10      6      7     11     14
  DEL PEAK 33(20P12.1) WILD-TYPE     22      8     26     17     43
D55V7, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                           10                             22
  CLUS_2                            6                              8
  CLUS_3                            7                             26
  CLUS_4                           11                             17
  CLUS_5                           14                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(20P12.1) MUTATED       11     11      3      4      9      2
  DEL PEAK 33(20P12.1) WILD-TYPE     16     25      9     15     23     16
                                vv
clus                             CLUS_7
  DEL PEAK 33(20P12.1) MUTATED        8
  DEL PEAK 33(20P12.1) WILD-TYPE     12
D55V8, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                           11                             16
  CLUS_2                           11                             25
  CLUS_3                            3                              9
  CLUS_4                            4                             15
  CLUS_5                            9                             23
  CLUS_6                            2                             16
  CLUS_7                            8                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(20P12.1) MUTATED        5     15     19
  DEL PEAK 33(20P12.1) WILD-TYPE     19     40     43
D55V9, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                           15                             40
  CLUS_3                           19                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(20P12.1) MUTATED        9     14     16
  DEL PEAK 33(20P12.1) WILD-TYPE     13     49     40
D55V10, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            9                             13
  CLUS_2                           14                             49
  CLUS_3                           16                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(20P12.1) MUTATED        4      6      3      1
  DEL PEAK 33(20P12.1) WILD-TYPE     13      8     10      5
D55V11, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            4                             13
  CLUS_2                            6                              8
  CLUS_3                            3                             10
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(20P12.1) MUTATED        2      6      5      1      0
  DEL PEAK 33(20P12.1) WILD-TYPE      9      6     11      5      5
D55V12, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            2                              9
  CLUS_2                            6                              6
  CLUS_3                            5                             11
  CLUS_4                            1                              5
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 34(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(21Q11.2) MUTATED        3      4      6      5      7
  DEL PEAK 34(21Q11.2) WILD-TYPE     10      4     14      8      8
D56V1, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                            3                             10
  CLUS_2                            4                              4
  CLUS_3                            6                             14
  CLUS_4                            5                              8
  CLUS_5                            7                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(21Q11.2) MUTATED        3      2      1      3      5      5
  DEL PEAK 34(21Q11.2) WILD-TYPE      3      8      6      6      4      3
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 34(21Q11.2) MUTATED        1      5      0
  DEL PEAK 34(21Q11.2) WILD-TYPE      8      3      3
D56V2, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            2                              8
  CLUS_3                            1                              6
  CLUS_4                            3                              6
  CLUS_5                            5                              4
  CLUS_6                            5                              3
  CLUS_7                            1                              8
  CLUS_8                            5                              3
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(21Q11.2) MUTATED       11     23     14     18      7
  DEL PEAK 34(21Q11.2) WILD-TYPE     15     17     13     24     23
D56V3, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           11                             15
  CLUS_2                           23                             17
  CLUS_3                           14                             13
  CLUS_4                           18                             24
  CLUS_5                            7                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(21Q11.2) MUTATED        5     13      9     14      8
  DEL PEAK 34(21Q11.2) WILD-TYPE      9     10      8     11      9
D56V4, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                           13                             10
  CLUS_3                            9                              8
  CLUS_4                           14                             11
  CLUS_5                            8                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(21Q11.2) MUTATED       22     12      9     16      0
  DEL PEAK 34(21Q11.2) WILD-TYPE     20     15     16     14      3
D56V5, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           22                             20
  CLUS_2                           12                             15
  CLUS_3                            9                             16
  CLUS_4                           16                             14
  CLUS_5                            0                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(21Q11.2) MUTATED        9      9     10      9     11     11
  DEL PEAK 34(21Q11.2) WILD-TYPE     11     11     14      9     18      5
D56V6, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                            9                             11
  CLUS_2                            9                             11
  CLUS_3                           10                             14
  CLUS_4                            9                              9
  CLUS_5                           11                             18
  CLUS_6                           11                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(21Q11.2) MUTATED       13      8     15     15     21
  DEL PEAK 34(21Q11.2) WILD-TYPE     19      6     18     13     36
D56V7, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           13                             19
  CLUS_2                            8                              6
  CLUS_3                           15                             18
  CLUS_4                           15                             13
  CLUS_5                           21                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(21Q11.2) MUTATED       15     18      4      7     14      6
  DEL PEAK 34(21Q11.2) WILD-TYPE     12     18      8     12     18     12
                                vv
clus                             CLUS_7
  DEL PEAK 34(21Q11.2) MUTATED        8
  DEL PEAK 34(21Q11.2) WILD-TYPE     12
D56V8, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           15                             12
  CLUS_2                           18                             18
  CLUS_3                            4                              8
  CLUS_4                            7                             12
  CLUS_5                           14                             18
  CLUS_6                            6                             12
  CLUS_7                            8                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(21Q11.2) MUTATED        7     31     28
  DEL PEAK 34(21Q11.2) WILD-TYPE     17     24     34
D56V9, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                           31                             24
  CLUS_3                           28                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(21Q11.2) MUTATED       12     28     26
  DEL PEAK 34(21Q11.2) WILD-TYPE     10     35     30
D56V10, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           12                             10
  CLUS_2                           28                             35
  CLUS_3                           26                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(21Q11.2) MUTATED        6      9      8      2
  DEL PEAK 34(21Q11.2) WILD-TYPE     11      5      5      4
D56V11, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                            6                             11
  CLUS_2                            9                              5
  CLUS_3                            8                              5
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(21Q11.2) MUTATED        6      5     11      2      1
  DEL PEAK 34(21Q11.2) WILD-TYPE      5      7      5      4      4
D56V12, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                            6                              5
  CLUS_2                            5                              7
  CLUS_3                           11                              5
  CLUS_4                            2                              4
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 35(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(22Q13.31) MUTATED        4      5      8      5      5
  DEL PEAK 35(22Q13.31) WILD-TYPE      9      3     12      8     10
D57V1, multiclass
        clus
vv       DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE
  CLUS_1                             4                               9
  CLUS_2                             5                               3
  CLUS_3                             8                              12
  CLUS_4                             5                               8
  CLUS_5                             5                              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(22Q13.31) MUTATED        1      4      2      2      6      5
  DEL PEAK 35(22Q13.31) WILD-TYPE      5      6      5      7      3      3
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 35(22Q13.31) MUTATED        3      4      0
  DEL PEAK 35(22Q13.31) WILD-TYPE      6      4      3
D57V2, multiclass
        clus
vv       DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE
  CLUS_1                             1                               5
  CLUS_2                             4                               6
  CLUS_3                             2                               5
  CLUS_4                             2                               7
  CLUS_5                             6                               3
  CLUS_6                             5                               3
  CLUS_7                             3                               6
  CLUS_8                             4                               4
  CLUS_9                             0                               3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(22Q13.31) MUTATED       14     17     15     16      6
  DEL PEAK 35(22Q13.31) WILD-TYPE     12     23     12     26     24
D57V3, multiclass
        clus
vv       DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE
  CLUS_1                            14                              12
  CLUS_2                            17                              23
  CLUS_3                            15                              12
  CLUS_4                            16                              26
  CLUS_5                             6                              24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(22Q13.31) MUTATED        5     10      7     11      9
  DEL PEAK 35(22Q13.31) WILD-TYPE      9     13     10     14      8
D57V4, multiclass
        clus
vv       DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE
  CLUS_1                             5                               9
  CLUS_2                            10                              13
  CLUS_3                             7                              10
  CLUS_4                            11                              14
  CLUS_5                             9                               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(22Q13.31) MUTATED       22     10      8     13      0
  DEL PEAK 35(22Q13.31) WILD-TYPE     20     17     17     17      3
D57V5, multiclass
        clus
vv       DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE
  CLUS_1                            22                              20
  CLUS_2                            10                              17
  CLUS_3                             8                              17
  CLUS_4                            13                              17
  CLUS_5                             0                               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(22Q13.31) MUTATED        7      8      7      9     12     10
  DEL PEAK 35(22Q13.31) WILD-TYPE     13     12     17      9     17      6
D57V6, multiclass
        clus
vv       DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE
  CLUS_1                             7                              13
  CLUS_2                             8                              12
  CLUS_3                             7                              17
  CLUS_4                             9                               9
  CLUS_5                            12                              17
  CLUS_6                            10                               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(22Q13.31) MUTATED       12      8     15      9     24
  DEL PEAK 35(22Q13.31) WILD-TYPE     20      6     18     19     33
D57V7, multiclass
        clus
vv       DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE
  CLUS_1                            12                              20
  CLUS_2                             8                               6
  CLUS_3                            15                              18
  CLUS_4                             9                              19
  CLUS_5                            24                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(22Q13.31) MUTATED       11     20      4      5     16      5
  DEL PEAK 35(22Q13.31) WILD-TYPE     16     16      8     14     16     13
                                 vv
clus                              CLUS_7
  DEL PEAK 35(22Q13.31) MUTATED        7
  DEL PEAK 35(22Q13.31) WILD-TYPE     13
D57V8, multiclass
        clus
vv       DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE
  CLUS_1                            11                              16
  CLUS_2                            20                              16
  CLUS_3                             4                               8
  CLUS_4                             5                              14
  CLUS_5                            16                              16
  CLUS_6                             5                              13
  CLUS_7                             7                              13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(22Q13.31) MUTATED        8     29     25
  DEL PEAK 35(22Q13.31) WILD-TYPE     16     26     37
D57V9, multiclass
        clus
vv       DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE
  CLUS_1                             8                              16
  CLUS_2                            29                              26
  CLUS_3                            25                              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(22Q13.31) MUTATED       14     27     21
  DEL PEAK 35(22Q13.31) WILD-TYPE      8     36     35
D57V10, multiclass
        clus
vv       DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE
  CLUS_1                            14                               8
  CLUS_2                            27                              36
  CLUS_3                            21                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(22Q13.31) MUTATED        7     11      5      2
  DEL PEAK 35(22Q13.31) WILD-TYPE     10      3      8      4
D57V11, multiclass
        clus
vv       DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE
  CLUS_1                             7                              10
  CLUS_2                            11                               3
  CLUS_3                             5                               8
  CLUS_4                             2                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(22Q13.31) MUTATED        9      4     10      2      0
  DEL PEAK 35(22Q13.31) WILD-TYPE      2      8      6      4      5
D57V12, multiclass
        clus
vv       DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE
  CLUS_1                             9                               2
  CLUS_2                             4                               8
  CLUS_3                            10                               6
  CLUS_4                             2                               4
  CLUS_5                             0                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 36(XP22.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(XP22.33) MUTATED        4      1      5      3      4
  DEL PEAK 36(XP22.33) WILD-TYPE      9      7     15     10     11
D58V1, multiclass
        clus
vv       DEL PEAK 36(XP22.33) MUTATED DEL PEAK 36(XP22.33) WILD-TYPE
  CLUS_1                            4                              9
  CLUS_2                            1                              7
  CLUS_3                            5                             15
  CLUS_4                            3                             10
  CLUS_5                            4                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(XP22.33) MUTATED        1      2      3      3      1      3
  DEL PEAK 36(XP22.33) WILD-TYPE      5      8      4      6      8      5
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 36(XP22.33) MUTATED        2      2      0
  DEL PEAK 36(XP22.33) WILD-TYPE      7      6      3
D58V2, multiclass
        clus
vv       DEL PEAK 36(XP22.33) MUTATED DEL PEAK 36(XP22.33) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            2                              8
  CLUS_3                            3                              4
  CLUS_4                            3                              6
  CLUS_5                            1                              8
  CLUS_6                            3                              5
  CLUS_7                            2                              7
  CLUS_8                            2                              6
  CLUS_9                            0                              3
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(XP22.33) MUTATED        7      6      8     10      3
  DEL PEAK 36(XP22.33) WILD-TYPE     19     34     19     32     27
D58V3, multiclass
        clus
vv       DEL PEAK 36(XP22.33) MUTATED DEL PEAK 36(XP22.33) WILD-TYPE
  CLUS_1                            7                             19
  CLUS_2                            6                             34
  CLUS_3                            8                             19
  CLUS_4                           10                             32
  CLUS_5                            3                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(XP22.33) MUTATED        0      9      3      0      5
  DEL PEAK 36(XP22.33) WILD-TYPE     14     14     14     25     12
D58V4, multiclass
        clus
vv       DEL PEAK 36(XP22.33) MUTATED DEL PEAK 36(XP22.33) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            9                             14
  CLUS_3                            3                             14
  CLUS_4                            0                             25
  CLUS_5                            5                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(XP22.33) MUTATED       10      5      6      5      1
  DEL PEAK 36(XP22.33) WILD-TYPE     32     22     19     25      2
D58V5, multiclass
        clus
vv       DEL PEAK 36(XP22.33) MUTATED DEL PEAK 36(XP22.33) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                            5                             22
  CLUS_3                            6                             19
  CLUS_4                            5                             25
  CLUS_5                            1                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(XP22.33) MUTATED        6      3      4      4      7      3
  DEL PEAK 36(XP22.33) WILD-TYPE     14     17     20     14     22     13
D58V6, multiclass
        clus
vv       DEL PEAK 36(XP22.33) MUTATED DEL PEAK 36(XP22.33) WILD-TYPE
  CLUS_1                            6                             14
  CLUS_2                            3                             17
  CLUS_3                            4                             20
  CLUS_4                            4                             14
  CLUS_5                            7                             22
  CLUS_6                            3                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(XP22.33) MUTATED        6      2      7      6     13
  DEL PEAK 36(XP22.33) WILD-TYPE     26     12     26     22     44
D58V7, multiclass
        clus
vv       DEL PEAK 36(XP22.33) MUTATED DEL PEAK 36(XP22.33) WILD-TYPE
  CLUS_1                            6                             26
  CLUS_2                            2                             12
  CLUS_3                            7                             26
  CLUS_4                            6                             22
  CLUS_5                           13                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(XP22.33) MUTATED        5      6      1      5      6      7
  DEL PEAK 36(XP22.33) WILD-TYPE     22     30     11     14     26     11
                                vv
clus                             CLUS_7
  DEL PEAK 36(XP22.33) MUTATED        4
  DEL PEAK 36(XP22.33) WILD-TYPE     16
D58V8, multiclass
        clus
vv       DEL PEAK 36(XP22.33) MUTATED DEL PEAK 36(XP22.33) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                            6                             30
  CLUS_3                            1                             11
  CLUS_4                            5                             14
  CLUS_5                            6                             26
  CLUS_6                            7                             11
  CLUS_7                            4                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(XP22.33) MUTATED        4     11     16
  DEL PEAK 36(XP22.33) WILD-TYPE     20     44     46
D58V9, multiclass
        clus
vv       DEL PEAK 36(XP22.33) MUTATED DEL PEAK 36(XP22.33) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                           11                             44
  CLUS_3                           16                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(XP22.33) MUTATED        5     14     12
  DEL PEAK 36(XP22.33) WILD-TYPE     17     49     44
D58V10, multiclass
        clus
vv       DEL PEAK 36(XP22.33) MUTATED DEL PEAK 36(XP22.33) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                           14                             49
  CLUS_3                           12                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(XP22.33) MUTATED        4      3      1      1
  DEL PEAK 36(XP22.33) WILD-TYPE     13     11     12      5
D58V11, multiclass
        clus
vv       DEL PEAK 36(XP22.33) MUTATED DEL PEAK 36(XP22.33) WILD-TYPE
  CLUS_1                            4                             13
  CLUS_2                            3                             11
  CLUS_3                            1                             12
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(XP22.33) MUTATED        1      2      3      1      2
  DEL PEAK 36(XP22.33) WILD-TYPE     10     10     13      5      3
D58V12, multiclass
        clus
vv       DEL PEAK 36(XP22.33) MUTATED DEL PEAK 36(XP22.33) WILD-TYPE
  CLUS_1                            1                             10
  CLUS_2                            2                             10
  CLUS_3                            3                             13
  CLUS_4                            1                              5
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
