[1] "ofn"        "-oTSARC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SARC-TP/22542442/SARC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SARC-TP/22534095/transformed.cor.cli.txt"

nPatients in clinical file=261, in cluster file=257, common to both=257
[1]  82 257
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               59               198 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               59               198 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               51               206 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               51               206 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               22               235 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               22               235 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               22               235 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               22               235 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               38               219 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               38               219 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               35               222 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               35               222 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               69               188 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               69               188 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               48               209 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               48               209 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               98               159 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               98               159 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               72               185 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               72               185 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               52               205 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               52               205 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               49               208 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               49               208 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               82               175 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               82               175 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               67               190 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               67               190 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               52               205 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               52               205 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               66               191 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               66               191 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               53               204 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               53               204 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               71               186 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               71               186 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                22                235 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                22                235 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                11                246 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                11                246 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                23                234 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                23                234 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                21                236 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                21                236 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                41                216 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                41                216 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                31                226 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                31                226 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                15                242 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                15                242 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                56                201 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                56                201 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                62                195 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                62                195 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                40                217 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                40                217 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                19                238 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                19                238 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                61                196 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                61                196 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                56                201 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                56                201 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                52                205 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                52                205 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                37                220 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                37                220 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                88                169 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                88                169 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                64                193 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                64                193 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                62                195 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                62                195 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                83                174 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                83                174 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                59                198 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                59                198 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                58                199 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                58                199 
[1] "XP GAIN MUTATION ANALYSIS"
[1] 3
  XP GAIN MUTATED XP GAIN WILD-TYPE 
               74               183 
  XP GAIN MUTATED XP GAIN WILD-TYPE 
               74               183 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               34               223 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               34               223 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               32               225 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               32               225 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               40               217 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               40               217 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               92               165 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               92               165 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               75               182 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               75               182 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               56               201 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               56               201 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               51               206 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               51               206 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               41               216 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               41               216 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               50               207 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               50               207 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               23               234 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               23               234 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               34               223 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               34               223 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               60               197 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               60               197 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               52               205 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               52               205 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               32               225 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               32               225 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               36               221 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               36               221 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               62               195 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               62               195 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               45               212 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               45               212 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               82               175 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               82               175 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               50               207 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               50               207 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               121                136 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               121                136 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               131                126 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               131                126 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                96                161 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                96                161 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                93                164 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                93                164 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                67                190 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                67                190 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                59                198 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                59                198 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               132                125 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               132                125 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                62                195 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                62                195 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                46                211 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                46                211 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                75                182 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                75                182 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               124                133 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               124                133 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                57                200 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                57                200 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                49                208 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                49                208 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                61                196 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                61                196 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                69                188 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                69                188 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                24                233 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                24                233 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                41                216 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                41                216 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                55                202 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                55                202 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                25                232 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                25                232 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                50                207 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                50                207 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                67                190 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                67                190 
[1] "XP LOSS MUTATION ANALYSIS"
[1] 3
  XP LOSS MUTATED XP LOSS WILD-TYPE 
               63               194 
  XP LOSS MUTATED XP LOSS WILD-TYPE 
               63               194 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              102               155 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              102               155 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 257 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 257 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED       22      3      6     28
  1P GAIN WILD-TYPE     73     57     33     35
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              22                73
  CLUS_2               3                57
  CLUS_3               6                33
  CLUS_4              28                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        7      5     16     31
  1P GAIN WILD-TYPE     47     51     56     44
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               7                47
  CLUS_2               5                51
  CLUS_3              16                56
  CLUS_4              31                44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED       12     16     12     12
  1P GAIN WILD-TYPE     46     29     49     44
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              12                46
  CLUS_2              16                29
  CLUS_3              12                49
  CLUS_4              12                44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P GAIN MUTATED        8      7     17     13      2      5
  1P GAIN WILD-TYPE     16     28     32     55     20     17
D1V4, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               8                16
  CLUS_2               7                28
  CLUS_3              17                32
  CLUS_4              13                55
  CLUS_5               2                20
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       31     17     11
  1P GAIN WILD-TYPE     83     60     53
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              31                83
  CLUS_2              17                60
  CLUS_3              11                53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P GAIN MUTATED       11      5     10      4     11      6     12
  1P GAIN WILD-TYPE     36     16     39     42     19     23     21
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              11                36
  CLUS_2               5                16
  CLUS_3              10                39
  CLUS_4               4                42
  CLUS_5              11                19
  CLUS_6               6                23
  CLUS_7              12                21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       23     14     20
  1P GAIN WILD-TYPE     82     36     80
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              23                82
  CLUS_2              14                36
  CLUS_3              20                80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED       22      5     27      3
  1P GAIN WILD-TYPE     60     32     87     19
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              22                60
  CLUS_2               5                32
  CLUS_3              27                87
  CLUS_4               3                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED       10      6     12      6     15
  1P GAIN WILD-TYPE     48     21     35     17     24
D1V9, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              10                48
  CLUS_2               6                21
  CLUS_3              12                35
  CLUS_4               6                17
  CLUS_5              15                24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED       10     13      7     16      3
  1P GAIN WILD-TYPE     48     36     14     26     21
D1V10, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              10                48
  CLUS_2              13                36
  CLUS_3               7                14
  CLUS_4              16                26
  CLUS_5               3                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       17      3      6     25
  1Q GAIN WILD-TYPE     78     57     33     38
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              17                78
  CLUS_2               3                57
  CLUS_3               6                33
  CLUS_4              25                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        3      8     22     18
  1Q GAIN WILD-TYPE     51     48     50     57
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               3                51
  CLUS_2               8                48
  CLUS_3              22                50
  CLUS_4              18                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       10      8     17      7
  1Q GAIN WILD-TYPE     48     37     44     49
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              10                48
  CLUS_2               8                37
  CLUS_3              17                44
  CLUS_4               7                49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q GAIN MUTATED        4      4     12     19      0      3
  1Q GAIN WILD-TYPE     20     31     37     49     22     19
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               4                31
  CLUS_3              12                37
  CLUS_4              19                49
  CLUS_5               0                22
  CLUS_6               3                19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       21     24      6
  1Q GAIN WILD-TYPE     93     53     58
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              21                93
  CLUS_2              24                53
  CLUS_3               6                58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q GAIN MUTATED        8      3     14      4      5      9      8
  1Q GAIN WILD-TYPE     39     18     35     42     25     20     25
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               8                39
  CLUS_2               3                18
  CLUS_3              14                35
  CLUS_4               4                42
  CLUS_5               5                25
  CLUS_6               9                20
  CLUS_7               8                25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       14      9     26
  1Q GAIN WILD-TYPE     91     41     74
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              14                91
  CLUS_2               9                41
  CLUS_3              26                74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       12      4     30      3
  1Q GAIN WILD-TYPE     70     33     84     19
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              12                70
  CLUS_2               4                33
  CLUS_3              30                84
  CLUS_4               3                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED        6      4     15      6     11
  1Q GAIN WILD-TYPE     52     23     32     17     28
D2V9, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               6                52
  CLUS_2               4                23
  CLUS_3              15                32
  CLUS_4               6                17
  CLUS_5              11                28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED        7     16      8      9      2
  1Q GAIN WILD-TYPE     51     33     13     33     22
D2V10, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               7                51
  CLUS_2              16                33
  CLUS_3               8                13
  CLUS_4               9                33
  CLUS_5               2                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED       15      2      3      2
  2P GAIN WILD-TYPE     80     58     36     61
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              15                80
  CLUS_2               2                58
  CLUS_3               3                36
  CLUS_4               2                61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        3      6      1     12
  2P GAIN WILD-TYPE     51     50     71     63
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               3                51
  CLUS_2               6                50
  CLUS_3               1                71
  CLUS_4              12                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        8      7      3      4
  2P GAIN WILD-TYPE     50     38     58     52
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               8                50
  CLUS_2               7                38
  CLUS_3               3                58
  CLUS_4               4                52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P GAIN MUTATED        2      3      7      2      2      6
  2P GAIN WILD-TYPE     22     32     42     66     20     16
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               2                22
  CLUS_2               3                32
  CLUS_3               7                42
  CLUS_4               2                66
  CLUS_5               2                20
  CLUS_6               6                16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        9      1     12
  2P GAIN WILD-TYPE    105     76     52
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               9               105
  CLUS_2               1                76
  CLUS_3              12                52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P GAIN MUTATED        3      0      1     10      6      0      2
  2P GAIN WILD-TYPE     44     21     48     36     24     29     31
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               3                44
  CLUS_2               0                21
  CLUS_3               1                48
  CLUS_4              10                36
  CLUS_5               6                24
  CLUS_6               0                29
  CLUS_7               2                31
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       14      3      5
  2P GAIN WILD-TYPE     91     47     95
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              14                91
  CLUS_2               3                47
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED       10      6      4      2
  2P GAIN WILD-TYPE     72     31    110     20
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              10                72
  CLUS_2               6                31
  CLUS_3               4               110
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        8      3      0      2      5
  2P GAIN WILD-TYPE     50     24     47     21     34
D3V9, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               8                50
  CLUS_2               3                24
  CLUS_3               0                47
  CLUS_4               2                21
  CLUS_5               5                34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        5      0      1      6      6
  2P GAIN WILD-TYPE     53     49     20     36     18
D3V10, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               5                53
  CLUS_2               0                49
  CLUS_3               1                20
  CLUS_4               6                36
  CLUS_5               6                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED       14      3      3      2
  2Q GAIN WILD-TYPE     81     57     36     61
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              14                81
  CLUS_2               3                57
  CLUS_3               3                36
  CLUS_4               2                61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        5      7      1      9
  2Q GAIN WILD-TYPE     49     49     71     66
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               5                49
  CLUS_2               7                49
  CLUS_3               1                71
  CLUS_4               9                66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        9      4      3      6
  2Q GAIN WILD-TYPE     49     41     58     50
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               9                49
  CLUS_2               4                41
  CLUS_3               3                58
  CLUS_4               6                50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2Q GAIN MUTATED        4      5      7      2      2      2
  2Q GAIN WILD-TYPE     20     30     42     66     20     20
D4V4, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               5                30
  CLUS_3               7                42
  CLUS_4               2                66
  CLUS_5               2                20
  CLUS_6               2                20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       11      1     10
  2Q GAIN WILD-TYPE    103     76     54
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              11               103
  CLUS_2               1                76
  CLUS_3              10                54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q GAIN MUTATED        4      2      1      8      6      0      1
  2Q GAIN WILD-TYPE     43     19     48     38     24     29     32
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               4                43
  CLUS_2               2                19
  CLUS_3               1                48
  CLUS_4               8                38
  CLUS_5               6                24
  CLUS_6               0                29
  CLUS_7               1                32
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       11      6      5
  2Q GAIN WILD-TYPE     94     44     95
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              11                94
  CLUS_2               6                44
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        8      7      5      2
  2Q GAIN WILD-TYPE     74     30    109     20
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               8                74
  CLUS_2               7                30
  CLUS_3               5               109
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        7      4      1      1      6
  2Q GAIN WILD-TYPE     51     23     46     22     33
D4V9, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               7                51
  CLUS_2               4                23
  CLUS_3               1                46
  CLUS_4               1                22
  CLUS_5               6                33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        4      1      2      7      5
  2Q GAIN WILD-TYPE     54     48     19     35     19
D4V10, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               4                54
  CLUS_2               1                48
  CLUS_3               2                19
  CLUS_4               7                35
  CLUS_5               5                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED       16      1      4     17
  3P GAIN WILD-TYPE     79     59     35     46
D5V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              16                79
  CLUS_2               1                59
  CLUS_3               4                35
  CLUS_4              17                46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        9      0     12     17
  3P GAIN WILD-TYPE     45     56     60     58
D5V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               9                45
  CLUS_2               0                56
  CLUS_3              12                60
  CLUS_4              17                58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        3      5      7     15
  3P GAIN WILD-TYPE     55     40     54     41
D5V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                55
  CLUS_2               5                40
  CLUS_3               7                54
  CLUS_4              15                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3P GAIN MUTATED        2      4     15      7      1      1
  3P GAIN WILD-TYPE     22     31     34     61     21     21
D5V4, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                22
  CLUS_2               4                31
  CLUS_3              15                34
  CLUS_4               7                61
  CLUS_5               1                21
  CLUS_6               1                21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       22     13      3
  3P GAIN WILD-TYPE     92     64     61
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              22                92
  CLUS_2              13                64
  CLUS_3               3                61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P GAIN MUTATED        3      4      9      0     11      3      8
  3P GAIN WILD-TYPE     44     17     40     46     19     26     25
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                44
  CLUS_2               4                17
  CLUS_3               9                40
  CLUS_4               0                46
  CLUS_5              11                19
  CLUS_6               3                26
  CLUS_7               8                25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       11     11     16
  3P GAIN WILD-TYPE     94     39     84
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              11                94
  CLUS_2              11                39
  CLUS_3              16                84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED       14      2     22      0
  3P GAIN WILD-TYPE     68     35     92     22
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              14                68
  CLUS_2               2                35
  CLUS_3              22                92
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        5      1      9      4     17
  3P GAIN WILD-TYPE     53     26     38     19     22
D5V9, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               5                53
  CLUS_2               1                26
  CLUS_3               9                38
  CLUS_4               4                19
  CLUS_5              17                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        8     10      8     10      0
  3P GAIN WILD-TYPE     50     39     13     32     24
D5V10, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               8                50
  CLUS_2              10                39
  CLUS_3               8                13
  CLUS_4              10                32
  CLUS_5               0                24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED       15      1      4     15
  3Q GAIN WILD-TYPE     80     59     35     48
D6V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              15                80
  CLUS_2               1                59
  CLUS_3               4                35
  CLUS_4              15                48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED       10      1      9     15
  3Q GAIN WILD-TYPE     44     55     63     60
D6V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              10                44
  CLUS_2               1                55
  CLUS_3               9                63
  CLUS_4              15                60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        2      5      6     16
  3Q GAIN WILD-TYPE     56     40     55     40
D6V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                56
  CLUS_2               5                40
  CLUS_3               6                55
  CLUS_4              16                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q GAIN MUTATED        2      4     15      5      1      2
  3Q GAIN WILD-TYPE     22     31     34     63     21     20
D6V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                22
  CLUS_2               4                31
  CLUS_3              15                34
  CLUS_4               5                63
  CLUS_5               1                21
  CLUS_6               2                20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       22     10      3
  3Q GAIN WILD-TYPE     92     67     61
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              22                92
  CLUS_2              10                67
  CLUS_3               3                61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q GAIN MUTATED        4      4      7      1     10      2      7
  3Q GAIN WILD-TYPE     43     17     42     45     20     27     26
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                43
  CLUS_2               4                17
  CLUS_3               7                42
  CLUS_4               1                45
  CLUS_5              10                20
  CLUS_6               2                27
  CLUS_7               7                26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       10     10     15
  3Q GAIN WILD-TYPE     95     40     85
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              10                95
  CLUS_2              10                40
  CLUS_3              15                85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED       13      1     21      0
  3Q GAIN WILD-TYPE     69     36     93     22
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              13                69
  CLUS_2               1                36
  CLUS_3              21                93
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        4      2      7      4     16
  3Q GAIN WILD-TYPE     54     25     40     19     23
D6V9, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                54
  CLUS_2               2                25
  CLUS_3               7                40
  CLUS_4               4                19
  CLUS_5              16                23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        7      8      9      9      0
  3Q GAIN WILD-TYPE     51     41     12     33     24
D6V10, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               7                51
  CLUS_2               8                41
  CLUS_3               9                12
  CLUS_4               9                33
  CLUS_5               0                24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED       34      3      8     24
  4P GAIN WILD-TYPE     61     57     31     39
D7V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              34                61
  CLUS_2               3                57
  CLUS_3               8                31
  CLUS_4              24                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        9      9     14     37
  4P GAIN WILD-TYPE     45     47     58     38
D7V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               9                45
  CLUS_2               9                47
  CLUS_3              14                58
  CLUS_4              37                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED       15     20     10     16
  4P GAIN WILD-TYPE     43     25     51     40
D7V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              15                43
  CLUS_2              20                25
  CLUS_3              10                51
  CLUS_4              16                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P GAIN MUTATED        8      9     26     11      3      4
  4P GAIN WILD-TYPE     16     26     23     57     19     18
D7V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               8                16
  CLUS_2               9                26
  CLUS_3              26                23
  CLUS_4              11                57
  CLUS_5               3                19
  CLUS_6               4                18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       39     14     16
  4P GAIN WILD-TYPE     75     63     48
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              39                75
  CLUS_2              14                63
  CLUS_3              16                48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P GAIN MUTATED       14      3      8      9     15      6     14
  4P GAIN WILD-TYPE     33     18     41     37     15     23     19
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              14                33
  CLUS_2               3                18
  CLUS_3               8                41
  CLUS_4               9                37
  CLUS_5              15                15
  CLUS_6               6                23
  CLUS_7              14                19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       32     17     18
  4P GAIN WILD-TYPE     73     33     82
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              32                73
  CLUS_2              17                33
  CLUS_3              18                82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED       29     10     26      2
  4P GAIN WILD-TYPE     53     27     88     20
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              29                53
  CLUS_2              10                27
  CLUS_3              26                88
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED       18      7      8      9     16
  4P GAIN WILD-TYPE     40     20     39     14     23
D7V9, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              18                40
  CLUS_2               7                20
  CLUS_3               8                39
  CLUS_4               9                14
  CLUS_5              16                23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED       22     10      6     16      4
  4P GAIN WILD-TYPE     36     39     15     26     20
D7V10, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              22                36
  CLUS_2              10                39
  CLUS_3               6                15
  CLUS_4              16                26
  CLUS_5               4                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED       20      3      7     18
  4Q GAIN WILD-TYPE     75     57     32     45
D8V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              20                75
  CLUS_2               3                57
  CLUS_3               7                32
  CLUS_4              18                45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        8      4     11     25
  4Q GAIN WILD-TYPE     46     52     61     50
D8V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               8                46
  CLUS_2               4                52
  CLUS_3              11                61
  CLUS_4              25                50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED       11     14      6     11
  4Q GAIN WILD-TYPE     47     31     55     45
D8V3, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              11                47
  CLUS_2              14                31
  CLUS_3               6                55
  CLUS_4              11                45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4Q GAIN MUTATED        5     10     12      9      2      4
  4Q GAIN WILD-TYPE     19     25     37     59     20     18
D8V4, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               5                19
  CLUS_2              10                25
  CLUS_3              12                37
  CLUS_4               9                59
  CLUS_5               2                20
  CLUS_6               4                18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       26     11     11
  4Q GAIN WILD-TYPE     88     66     53
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              26                88
  CLUS_2              11                66
  CLUS_3              11                53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q GAIN MUTATED       10      3      6      5      9      5     10
  4Q GAIN WILD-TYPE     37     18     43     41     21     24     23
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              10                37
  CLUS_2               3                18
  CLUS_3               6                43
  CLUS_4               5                41
  CLUS_5               9                21
  CLUS_6               5                24
  CLUS_7              10                23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       20     12     15
  4Q GAIN WILD-TYPE     85     38     85
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              20                85
  CLUS_2              12                38
  CLUS_3              15                85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED       19      7     21      0
  4Q GAIN WILD-TYPE     63     30     93     22
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              19                63
  CLUS_2               7                30
  CLUS_3              21                93
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED       11      5      4      6     11
  4Q GAIN WILD-TYPE     47     22     43     17     28
D8V9, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              11                47
  CLUS_2               5                22
  CLUS_3               4                43
  CLUS_4               6                17
  CLUS_5              11                28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED       13      6      6     10      2
  4Q GAIN WILD-TYPE     45     43     15     32     22
D8V10, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              13                45
  CLUS_2               6                43
  CLUS_3               6                15
  CLUS_4              10                32
  CLUS_5               2                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       52      6     11     29
  5P GAIN WILD-TYPE     43     54     28     34
D9V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              52                43
  CLUS_2               6                54
  CLUS_3              11                28
  CLUS_4              29                34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       15     11     26     46
  5P GAIN WILD-TYPE     39     45     46     29
D9V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              15                39
  CLUS_2              11                45
  CLUS_3              26                46
  CLUS_4              46                29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       20     24     21     21
  5P GAIN WILD-TYPE     38     21     40     35
D9V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              20                38
  CLUS_2              24                21
  CLUS_3              21                40
  CLUS_4              21                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P GAIN MUTATED       11     13     29     21      7      5
  5P GAIN WILD-TYPE     13     22     20     47     15     17
D9V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              11                13
  CLUS_2              13                22
  CLUS_3              29                20
  CLUS_4              21                47
  CLUS_5               7                15
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       53     27     18
  5P GAIN WILD-TYPE     61     50     46
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              53                61
  CLUS_2              27                50
  CLUS_3              18                46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P GAIN MUTATED       26      4     22     10     18      4     14
  5P GAIN WILD-TYPE     21     17     27     36     12     25     19
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              26                21
  CLUS_2               4                17
  CLUS_3              22                27
  CLUS_4              10                36
  CLUS_5              18                12
  CLUS_6               4                25
  CLUS_7              14                19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       38     21     39
  5P GAIN WILD-TYPE     67     29     61
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              38                67
  CLUS_2              21                29
  CLUS_3              39                61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       40     10     46      2
  5P GAIN WILD-TYPE     42     27     68     20
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              40                42
  CLUS_2              10                27
  CLUS_3              46                68
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED       21      9     20      9     17
  5P GAIN WILD-TYPE     37     18     27     14     22
D9V9, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              21                37
  CLUS_2               9                18
  CLUS_3              20                27
  CLUS_4               9                14
  CLUS_5              17                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED       24     19     10     19      4
  5P GAIN WILD-TYPE     34     30     11     23     20
D9V10, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              24                34
  CLUS_2              19                30
  CLUS_3              10                11
  CLUS_4              19                23
  CLUS_5               4                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED       35      5     10     22
  5Q GAIN WILD-TYPE     60     55     29     41
D10V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              35                60
  CLUS_2               5                55
  CLUS_3              10                29
  CLUS_4              22                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED       13      8     20     31
  5Q GAIN WILD-TYPE     41     48     52     44
D10V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              13                41
  CLUS_2               8                48
  CLUS_3              20                52
  CLUS_4              31                44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED       14     17     17     16
  5Q GAIN WILD-TYPE     44     28     44     40
D10V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              14                44
  CLUS_2              17                28
  CLUS_3              17                44
  CLUS_4              16                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q GAIN MUTATED        8     11     20     16      4      5
  5Q GAIN WILD-TYPE     16     24     29     52     18     17
D10V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               8                16
  CLUS_2              11                24
  CLUS_3              20                29
  CLUS_4              16                52
  CLUS_5               4                18
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       35     21     15
  5Q GAIN WILD-TYPE     79     56     49
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              35                79
  CLUS_2              21                56
  CLUS_3              15                49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q GAIN MUTATED       19      3     17      8     12      3      9
  5Q GAIN WILD-TYPE     28     18     32     38     18     26     24
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              19                28
  CLUS_2               3                18
  CLUS_3              17                32
  CLUS_4               8                38
  CLUS_5              12                18
  CLUS_6               3                26
  CLUS_7               9                24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       25     17     30
  5Q GAIN WILD-TYPE     80     33     70
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              25                80
  CLUS_2              17                33
  CLUS_3              30                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED       25     10     35      2
  5Q GAIN WILD-TYPE     57     27     79     20
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              25                57
  CLUS_2              10                27
  CLUS_3              35                79
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED       14      6     14      9     13
  5Q GAIN WILD-TYPE     44     21     33     14     26
D10V9, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              14                44
  CLUS_2               6                21
  CLUS_3              14                33
  CLUS_4               9                14
  CLUS_5              13                26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED       16     14      8     14      4
  5Q GAIN WILD-TYPE     42     35     13     28     20
D10V10, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              16                42
  CLUS_2              14                35
  CLUS_3               8                13
  CLUS_4              14                28
  CLUS_5               4                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED       30      2      1     19
  6P GAIN WILD-TYPE     65     58     38     44
D11V1, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              30                65
  CLUS_2               2                58
  CLUS_3               1                38
  CLUS_4              19                44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        9      9      6     28
  6P GAIN WILD-TYPE     45     47     66     47
D11V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               9                45
  CLUS_2               9                47
  CLUS_3               6                66
  CLUS_4              28                47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED       17     15      3     11
  6P GAIN WILD-TYPE     41     30     58     45
D11V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              17                41
  CLUS_2              15                30
  CLUS_3               3                58
  CLUS_4              11                45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P GAIN MUTATED       13      5     15      5      3      5
  6P GAIN WILD-TYPE     11     30     34     63     19     17
D11V4, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              13                11
  CLUS_2               5                30
  CLUS_3              15                34
  CLUS_4               5                63
  CLUS_5               3                19
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       35      6     11
  6P GAIN WILD-TYPE     79     71     53
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              35                79
  CLUS_2               6                71
  CLUS_3              11                53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P GAIN MUTATED       22      3      3      6      7      3      8
  6P GAIN WILD-TYPE     25     18     46     40     23     26     25
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              22                25
  CLUS_2               3                18
  CLUS_3               3                46
  CLUS_4               6                40
  CLUS_5               7                23
  CLUS_6               3                26
  CLUS_7               8                25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       25     14     12
  6P GAIN WILD-TYPE     80     36     88
D11V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              25                80
  CLUS_2              14                36
  CLUS_3              12                88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED       24      7     19      1
  6P GAIN WILD-TYPE     58     30     95     21
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              24                58
  CLUS_2               7                30
  CLUS_3              19                95
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED       10     10      5      7     10
  6P GAIN WILD-TYPE     48     17     42     16     29
D11V9, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              10                48
  CLUS_2              10                17
  CLUS_3               5                42
  CLUS_4               7                16
  CLUS_5              10                29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED       17      5      9      9      2
  6P GAIN WILD-TYPE     41     44     12     33     22
D11V10, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              17                41
  CLUS_2               5                44
  CLUS_3               9                12
  CLUS_4               9                33
  CLUS_5               2                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED       28      4      1     16
  6Q GAIN WILD-TYPE     67     56     38     47
D12V1, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              28                67
  CLUS_2               4                56
  CLUS_3               1                38
  CLUS_4              16                47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        9      9      7     24
  6Q GAIN WILD-TYPE     45     47     65     51
D12V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               9                45
  CLUS_2               9                47
  CLUS_3               7                65
  CLUS_4              24                51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED       18     12      5      8
  6Q GAIN WILD-TYPE     40     33     56     48
D12V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              18                40
  CLUS_2              12                33
  CLUS_3               5                56
  CLUS_4               8                48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q GAIN MUTATED       10      8     12      7      3      3
  6Q GAIN WILD-TYPE     14     27     37     61     19     19
D12V4, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              10                14
  CLUS_2               8                27
  CLUS_3              12                37
  CLUS_4               7                61
  CLUS_5               3                19
  CLUS_6               3                19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       33      7      9
  6Q GAIN WILD-TYPE     81     70     55
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              33                81
  CLUS_2               7                70
  CLUS_3               9                55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q GAIN MUTATED       21      4      4      6      4      3      7
  6Q GAIN WILD-TYPE     26     17     45     40     26     26     26
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              21                26
  CLUS_2               4                17
  CLUS_3               4                45
  CLUS_4               6                40
  CLUS_5               4                26
  CLUS_6               3                26
  CLUS_7               7                26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       25     13     10
  6Q GAIN WILD-TYPE     80     37     90
D12V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              25                80
  CLUS_2              13                37
  CLUS_3              10                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED       25      5     17      1
  6Q GAIN WILD-TYPE     57     32     97     21
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              25                57
  CLUS_2               5                32
  CLUS_3              17                97
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED       10     12      5      6      9
  6Q GAIN WILD-TYPE     48     15     42     17     30
D12V9, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              10                48
  CLUS_2              12                15
  CLUS_3               5                42
  CLUS_4               6                17
  CLUS_5               9                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED       18      5      7     10      2
  6Q GAIN WILD-TYPE     40     44     14     32     22
D12V10, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              18                40
  CLUS_2               5                44
  CLUS_3               7                14
  CLUS_4              10                32
  CLUS_5               2                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       44      4      8     26
  7P GAIN WILD-TYPE     51     56     31     37
D13V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              44                51
  CLUS_2               4                56
  CLUS_3               8                31
  CLUS_4              26                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       16     13     15     38
  7P GAIN WILD-TYPE     38     43     57     37
D13V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              16                38
  CLUS_2              13                43
  CLUS_3              15                57
  CLUS_4              38                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       21     18     13     25
  7P GAIN WILD-TYPE     37     27     48     31
D13V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              21                37
  CLUS_2              18                27
  CLUS_3              13                48
  CLUS_4              25                31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7P GAIN MUTATED       13      8     24     14     11      7
  7P GAIN WILD-TYPE     11     27     25     54     11     15
D13V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              13                11
  CLUS_2               8                27
  CLUS_3              24                25
  CLUS_4              14                54
  CLUS_5              11                11
  CLUS_6               7                15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       48     15     19
  7P GAIN WILD-TYPE     66     62     45
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              48                66
  CLUS_2              15                62
  CLUS_3              19                45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P GAIN MUTATED       21      5      9     12     15      7     13
  7P GAIN WILD-TYPE     26     16     40     34     15     22     20
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              21                26
  CLUS_2               5                16
  CLUS_3               9                40
  CLUS_4              12                34
  CLUS_5              15                15
  CLUS_6               7                22
  CLUS_7              13                20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       35     21     24
  7P GAIN WILD-TYPE     70     29     76
D13V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              35                70
  CLUS_2              21                29
  CLUS_3              24                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       31     12     33      4
  7P GAIN WILD-TYPE     51     25     81     18
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              31                51
  CLUS_2              12                25
  CLUS_3              33                81
  CLUS_4               4                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED       16     11      8     11     20
  7P GAIN WILD-TYPE     42     16     39     12     19
D13V9, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              16                42
  CLUS_2              11                16
  CLUS_3               8                39
  CLUS_4              11                12
  CLUS_5              20                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED       17      9     13     20      7
  7P GAIN WILD-TYPE     41     40      8     22     17
D13V10, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              17                41
  CLUS_2               9                40
  CLUS_3              13                 8
  CLUS_4              20                22
  CLUS_5               7                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       37      6      9     15
  7Q GAIN WILD-TYPE     58     54     30     48
D14V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              37                58
  CLUS_2               6                54
  CLUS_3               9                30
  CLUS_4              15                48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       17      8     11     31
  7Q GAIN WILD-TYPE     37     48     61     44
D14V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              17                37
  CLUS_2               8                48
  CLUS_3              11                61
  CLUS_4              31                44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       15     14     11     20
  7Q GAIN WILD-TYPE     43     31     50     36
D14V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              15                43
  CLUS_2              14                31
  CLUS_3              11                50
  CLUS_4              20                36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q GAIN MUTATED       10      9     20     10      8      3
  7Q GAIN WILD-TYPE     14     26     29     58     14     19
D14V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              10                14
  CLUS_2               9                26
  CLUS_3              20                29
  CLUS_4              10                58
  CLUS_5               8                14
  CLUS_6               3                19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       42     11     14
  7Q GAIN WILD-TYPE     72     66     50
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              42                72
  CLUS_2              11                66
  CLUS_3              14                50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q GAIN MUTATED       18      5      8      9     10      4     13
  7Q GAIN WILD-TYPE     29     16     41     37     20     25     20
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              18                29
  CLUS_2               5                16
  CLUS_3               8                41
  CLUS_4               9                37
  CLUS_5              10                20
  CLUS_6               4                25
  CLUS_7              13                20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       28     21     18
  7Q GAIN WILD-TYPE     77     29     82
D14V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              28                77
  CLUS_2              21                29
  CLUS_3              18                82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       26     11     27      3
  7Q GAIN WILD-TYPE     56     26     87     19
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              26                56
  CLUS_2              11                26
  CLUS_3              27                87
  CLUS_4               3                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED       13      7      6      9     20
  7Q GAIN WILD-TYPE     45     20     41     14     19
D14V9, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              13                45
  CLUS_2               7                20
  CLUS_3               6                41
  CLUS_4               9                14
  CLUS_5              20                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED       17      7     10     17      4
  7Q GAIN WILD-TYPE     41     42     11     25     20
D14V10, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              17                41
  CLUS_2               7                42
  CLUS_3              10                11
  CLUS_4              17                25
  CLUS_5               4                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       24      5     10     13
  8P GAIN WILD-TYPE     71     55     29     50
D15V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              24                71
  CLUS_2               5                55
  CLUS_3              10                29
  CLUS_4              13                50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       12      7     13     20
  8P GAIN WILD-TYPE     42     49     59     55
D15V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              12                42
  CLUS_2               7                49
  CLUS_3              13                59
  CLUS_4              20                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       11     14     11     10
  8P GAIN WILD-TYPE     47     31     50     46
D15V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              11                47
  CLUS_2              14                31
  CLUS_3              11                50
  CLUS_4              10                46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P GAIN MUTATED        3      7     15     13      4      4
  8P GAIN WILD-TYPE     21     28     34     55     18     18
D15V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                21
  CLUS_2               7                28
  CLUS_3              15                34
  CLUS_4              13                55
  CLUS_5               4                18
  CLUS_6               4                18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       25     13     14
  8P GAIN WILD-TYPE     89     64     50
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              25                89
  CLUS_2              13                64
  CLUS_3              14                50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P GAIN MUTATED        9      2     11     10     11      2      7
  8P GAIN WILD-TYPE     38     19     38     36     19     27     26
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               9                38
  CLUS_2               2                19
  CLUS_3              11                38
  CLUS_4              10                36
  CLUS_5              11                19
  CLUS_6               2                27
  CLUS_7               7                26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       19     11     22
  8P GAIN WILD-TYPE     86     39     78
D15V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              19                86
  CLUS_2              11                39
  CLUS_3              22                78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       18      5     27      2
  8P GAIN WILD-TYPE     64     32     87     20
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              18                64
  CLUS_2               5                32
  CLUS_3              27                87
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED       10      5      8      8     13
  8P GAIN WILD-TYPE     48     22     39     15     26
D15V9, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              10                48
  CLUS_2               5                22
  CLUS_3               8                39
  CLUS_4               8                15
  CLUS_5              13                26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED       11      9     11      9      4
  8P GAIN WILD-TYPE     47     40     10     33     20
D15V10, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              11                47
  CLUS_2               9                40
  CLUS_3              11                10
  CLUS_4               9                33
  CLUS_5               4                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       33      5     11     17
  8Q GAIN WILD-TYPE     62     55     28     46
D16V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              33                62
  CLUS_2               5                55
  CLUS_3              11                28
  CLUS_4              17                46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       12     10     18     26
  8Q GAIN WILD-TYPE     42     46     54     49
D16V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              12                42
  CLUS_2              10                46
  CLUS_3              18                54
  CLUS_4              26                49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       11     17     12     16
  8Q GAIN WILD-TYPE     47     28     49     40
D16V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              11                47
  CLUS_2              17                28
  CLUS_3              12                49
  CLUS_4              16                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q GAIN MUTATED        3      5     21     15      3      9
  8Q GAIN WILD-TYPE     21     30     28     53     19     13
D16V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                21
  CLUS_2               5                30
  CLUS_3              21                28
  CLUS_4              15                53
  CLUS_5               3                19
  CLUS_6               9                13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       29     19     18
  8Q GAIN WILD-TYPE     85     58     46
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              29                85
  CLUS_2              19                58
  CLUS_3              18                46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q GAIN MUTATED        7      4     13     13     14      5     10
  8Q GAIN WILD-TYPE     40     17     36     33     16     24     23
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               7                40
  CLUS_2               4                17
  CLUS_3              13                36
  CLUS_4              13                33
  CLUS_5              14                16
  CLUS_6               5                24
  CLUS_7              10                23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       22     15     28
  8Q GAIN WILD-TYPE     83     35     72
D16V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              22                83
  CLUS_2              15                35
  CLUS_3              28                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       20      6     35      4
  8Q GAIN WILD-TYPE     62     31     79     18
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              20                62
  CLUS_2               6                31
  CLUS_3              35                79
  CLUS_4               4                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED       12      4     11     10     17
  8Q GAIN WILD-TYPE     46     23     36     13     22
D16V9, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              12                46
  CLUS_2               4                23
  CLUS_3              11                36
  CLUS_4              10                13
  CLUS_5              17                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED       11     12     11     13      7
  8Q GAIN WILD-TYPE     47     37     10     29     17
D16V10, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              11                47
  CLUS_2              12                37
  CLUS_3              11                10
  CLUS_4              13                29
  CLUS_5               7                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED       21      5      2     25
  9P GAIN WILD-TYPE     74     55     37     38
D17V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              21                74
  CLUS_2               5                55
  CLUS_3               2                37
  CLUS_4              25                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED       12      6      8     27
  9P GAIN WILD-TYPE     42     50     64     48
D17V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              12                42
  CLUS_2               6                50
  CLUS_3               8                64
  CLUS_4              27                48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED       15     13      6     14
  9P GAIN WILD-TYPE     43     32     55     42
D17V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              15                43
  CLUS_2              13                32
  CLUS_3               6                55
  CLUS_4              14                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P GAIN MUTATED       10      4     18      6      5      5
  9P GAIN WILD-TYPE     14     31     31     62     17     17
D17V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              10                14
  CLUS_2               4                31
  CLUS_3              18                31
  CLUS_4               6                62
  CLUS_5               5                17
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       33      8     12
  9P GAIN WILD-TYPE     81     69     52
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              33                81
  CLUS_2               8                69
  CLUS_3              12                52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P GAIN MUTATED       17      7      5      3     10      3      8
  9P GAIN WILD-TYPE     30     14     44     43     20     26     25
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              17                30
  CLUS_2               7                14
  CLUS_3               5                44
  CLUS_4               3                43
  CLUS_5              10                20
  CLUS_6               3                26
  CLUS_7               8                25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       28     12     13
  9P GAIN WILD-TYPE     77     38     87
D17V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              28                77
  CLUS_2              12                38
  CLUS_3              13                87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED       26      9     16      2
  9P GAIN WILD-TYPE     56     28     98     20
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              26                56
  CLUS_2               9                28
  CLUS_3              16                98
  CLUS_4               2                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED       13      8      6      8     12
  9P GAIN WILD-TYPE     45     19     41     15     27
D17V9, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              13                45
  CLUS_2               8                19
  CLUS_3               6                41
  CLUS_4               8                15
  CLUS_5              12                27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED       16      7      6     15      3
  9P GAIN WILD-TYPE     42     42     15     27     21
D17V10, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              16                42
  CLUS_2               7                42
  CLUS_3               6                15
  CLUS_4              15                27
  CLUS_5               3                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED       37      5      3     26
  9Q GAIN WILD-TYPE     58     55     36     37
D18V1, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              37                58
  CLUS_2               5                55
  CLUS_3               3                36
  CLUS_4              26                37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED       17      7     11     36
  9Q GAIN WILD-TYPE     37     49     61     39
D18V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              17                37
  CLUS_2               7                49
  CLUS_3              11                61
  CLUS_4              36                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED       19     16      8     21
  9Q GAIN WILD-TYPE     39     29     53     35
D18V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              19                39
  CLUS_2              16                29
  CLUS_3               8                53
  CLUS_4              21                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q GAIN MUTATED       12      7     23      9      8      5
  9Q GAIN WILD-TYPE     12     28     26     59     14     17
D18V4, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              12                12
  CLUS_2               7                28
  CLUS_3              23                26
  CLUS_4               9                59
  CLUS_5               8                14
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       46     11     14
  9Q GAIN WILD-TYPE     68     66     50
D18V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              46                68
  CLUS_2              11                66
  CLUS_3              14                50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q GAIN MUTATED       22      9     10      5     15      1      9
  9Q GAIN WILD-TYPE     25     12     39     41     15     28     24
D18V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              22                25
  CLUS_2               9                12
  CLUS_3              10                39
  CLUS_4               5                41
  CLUS_5              15                15
  CLUS_6               1                28
  CLUS_7               9                24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       34     19     18
  9Q GAIN WILD-TYPE     71     31     82
D18V7, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              34                71
  CLUS_2              19                31
  CLUS_3              18                82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED       32     13     25      1
  9Q GAIN WILD-TYPE     50     24     89     21
D18V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              32                50
  CLUS_2              13                24
  CLUS_3              25                89
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED       16     12     10      8     18
  9Q GAIN WILD-TYPE     42     15     37     15     21
D18V9, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              16                42
  CLUS_2              12                15
  CLUS_3              10                37
  CLUS_4               8                15
  CLUS_5              18                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED       21     10     11     20      2
  9Q GAIN WILD-TYPE     37     39     10     22     22
D18V10, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              21                37
  CLUS_2              10                39
  CLUS_3              11                10
  CLUS_4              20                22
  CLUS_5               2                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        9      2      0     11
  10P GAIN WILD-TYPE     86     58     39     52
D19V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                9                 86
  CLUS_2                2                 58
  CLUS_3                0                 39
  CLUS_4               11                 52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        5      2      4     11
  10P GAIN WILD-TYPE     49     54     68     64
D19V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                5                 49
  CLUS_2                2                 54
  CLUS_3                4                 68
  CLUS_4               11                 64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        6      4      3      9
  10P GAIN WILD-TYPE     52     41     58     47
D19V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                6                 52
  CLUS_2                4                 41
  CLUS_3                3                 58
  CLUS_4                9                 47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P GAIN MUTATED        3      4      8      6      0      1
  10P GAIN WILD-TYPE     21     31     41     62     22     21
D19V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                4                 31
  CLUS_3                8                 41
  CLUS_4                6                 62
  CLUS_5                0                 22
  CLUS_6                1                 21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       15      4      3
  10P GAIN WILD-TYPE     99     73     61
D19V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               15                 99
  CLUS_2                4                 73
  CLUS_3                3                 61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P GAIN MUTATED        5      1      2      2      7      2      3
  10P GAIN WILD-TYPE     42     20     47     44     23     27     30
D19V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                5                 42
  CLUS_2                1                 20
  CLUS_3                2                 47
  CLUS_4                2                 44
  CLUS_5                7                 23
  CLUS_6                2                 27
  CLUS_7                3                 30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        7      7      7
  10P GAIN WILD-TYPE     98     43     93
D19V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                7                 98
  CLUS_2                7                 43
  CLUS_3                7                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        7      5      9      0
  10P GAIN WILD-TYPE     75     32    105     22
D19V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                7                 75
  CLUS_2                5                 32
  CLUS_3                9                105
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        3      2      2      3      7
  10P GAIN WILD-TYPE     55     25     45     20     32
D19V9, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                3                 55
  CLUS_2                2                 25
  CLUS_3                2                 45
  CLUS_4                3                 20
  CLUS_5                7                 32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        2      3      5      6      1
  10P GAIN WILD-TYPE     56     46     16     36     23
D19V10, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                 56
  CLUS_2                3                 46
  CLUS_3                5                 16
  CLUS_4                6                 36
  CLUS_5                1                 23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        8      2      0      1
  10Q GAIN WILD-TYPE     87     58     39     62
D20V1, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                8                 87
  CLUS_2                2                 58
  CLUS_3                0                 39
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        4      4      0      3
  10Q GAIN WILD-TYPE     50     52     72     72
D20V2, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                4                 52
  CLUS_3                0                 72
  CLUS_4                3                 72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        3      2      0      6
  10Q GAIN WILD-TYPE     55     43     61     50
D20V3, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 55
  CLUS_2                2                 43
  CLUS_3                0                 61
  CLUS_4                6                 50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10Q GAIN MUTATED        1      3      4      1      1      1
  10Q GAIN WILD-TYPE     23     32     45     67     21     21
D20V4, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                3                 32
  CLUS_3                4                 45
  CLUS_4                1                 67
  CLUS_5                1                 21
  CLUS_6                1                 21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        9      0      2
  10Q GAIN WILD-TYPE    105     77     62
D20V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                9                105
  CLUS_2                0                 77
  CLUS_3                2                 62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q GAIN MUTATED        3      1      0      3      4      0      0
  10Q GAIN WILD-TYPE     44     20     49     43     26     29     33
D20V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                1                 20
  CLUS_3                0                 49
  CLUS_4                3                 43
  CLUS_5                4                 26
  CLUS_6                0                 29
  CLUS_7                0                 33
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        6      3      2
  10Q GAIN WILD-TYPE     99     47     98
D20V7, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                6                 99
  CLUS_2                3                 47
  CLUS_3                2                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        6      2      2      1
  10Q GAIN WILD-TYPE     76     35    112     21
D20V8, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                6                 76
  CLUS_2                2                 35
  CLUS_3                2                112
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED        3      3      0      0      5
  10Q GAIN WILD-TYPE     55     24     47     23     34
D20V9, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 55
  CLUS_2                3                 24
  CLUS_3                0                 47
  CLUS_4                0                 23
  CLUS_5                5                 34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED        2      0      2      5      2
  10Q GAIN WILD-TYPE     56     49     19     37     22
D20V10, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                 56
  CLUS_2                0                 49
  CLUS_3                2                 19
  CLUS_4                5                 37
  CLUS_5                2                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED       12      0      3      8
  11P GAIN WILD-TYPE     83     60     36     55
D21V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               12                 83
  CLUS_2                0                 60
  CLUS_3                3                 36
  CLUS_4                8                 55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        6      2      3     12
  11P GAIN WILD-TYPE     48     54     69     63
D21V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                6                 48
  CLUS_2                2                 54
  CLUS_3                3                 69
  CLUS_4               12                 63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        6      5      5      6
  11P GAIN WILD-TYPE     52     40     56     50
D21V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                6                 52
  CLUS_2                5                 40
  CLUS_3                5                 56
  CLUS_4                6                 50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P GAIN MUTATED        2      3      9      4      2      2
  11P GAIN WILD-TYPE     22     32     40     64     20     20
D21V4, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                3                 32
  CLUS_3                9                 40
  CLUS_4                4                 64
  CLUS_5                2                 20
  CLUS_6                2                 20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       14      3      5
  11P GAIN WILD-TYPE    100     74     59
D21V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               14                100
  CLUS_2                3                 74
  CLUS_3                5                 59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P GAIN MUTATED        6      0      1      2      8      2      3
  11P GAIN WILD-TYPE     41     21     48     44     22     27     30
D21V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                6                 41
  CLUS_2                0                 21
  CLUS_3                1                 48
  CLUS_4                2                 44
  CLUS_5                8                 22
  CLUS_6                2                 27
  CLUS_7                3                 30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        9      7      7
  11P GAIN WILD-TYPE     96     43     93
D21V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                9                 96
  CLUS_2                7                 43
  CLUS_3                7                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        9      6      8      0
  11P GAIN WILD-TYPE     73     31    106     22
D21V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                9                 73
  CLUS_2                6                 31
  CLUS_3                8                106
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        5      3      1      2      7
  11P GAIN WILD-TYPE     53     24     46     21     32
D21V9, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                 53
  CLUS_2                3                 24
  CLUS_3                1                 46
  CLUS_4                2                 21
  CLUS_5                7                 32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        5      2      4      6      1
  11P GAIN WILD-TYPE     53     47     17     36     23
D21V10, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                 53
  CLUS_2                2                 47
  CLUS_3                4                 17
  CLUS_4                6                 36
  CLUS_5                1                 23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED       11      0      4      6
  11Q GAIN WILD-TYPE     84     60     35     57
D22V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               11                 84
  CLUS_2                0                 60
  CLUS_3                4                 35
  CLUS_4                6                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        5      1      4     11
  11Q GAIN WILD-TYPE     49     55     68     64
D22V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                5                 49
  CLUS_2                1                 55
  CLUS_3                4                 68
  CLUS_4               11                 64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        6      4      6      5
  11Q GAIN WILD-TYPE     52     41     55     51
D22V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                6                 52
  CLUS_2                4                 41
  CLUS_3                6                 55
  CLUS_4                5                 51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q GAIN MUTATED        3      3      7      5      1      2
  11Q GAIN WILD-TYPE     21     32     42     63     21     20
D22V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                3                 32
  CLUS_3                7                 42
  CLUS_4                5                 63
  CLUS_5                1                 21
  CLUS_6                2                 20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       12      4      5
  11Q GAIN WILD-TYPE    102     73     59
D22V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               12                102
  CLUS_2                4                 73
  CLUS_3                5                 59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q GAIN MUTATED        4      0      1      2      8      3      3
  11Q GAIN WILD-TYPE     43     21     48     44     22     26     30
D22V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                0                 21
  CLUS_3                1                 48
  CLUS_4                2                 44
  CLUS_5                8                 22
  CLUS_6                3                 26
  CLUS_7                3                 30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        9      5      7
  11Q GAIN WILD-TYPE     96     45     93
D22V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                9                 96
  CLUS_2                5                 45
  CLUS_3                7                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        9      4      8      0
  11Q GAIN WILD-TYPE     73     33    106     22
D22V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                9                 73
  CLUS_2                4                 33
  CLUS_3                8                106
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        5      1      2      2      6
  11Q GAIN WILD-TYPE     53     26     45     21     33
D22V9, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                5                 53
  CLUS_2                1                 26
  CLUS_3                2                 45
  CLUS_4                2                 21
  CLUS_5                6                 33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        4      3      2      6      1
  11Q GAIN WILD-TYPE     54     46     19     36     23
D22V10, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 54
  CLUS_2                3                 46
  CLUS_3                2                 19
  CLUS_4                6                 36
  CLUS_5                1                 23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       28      3      5      5
  12P GAIN WILD-TYPE     67     57     34     58
D23V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               28                 67
  CLUS_2                3                 57
  CLUS_3                5                 34
  CLUS_4                5                 58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       10     10      4     17
  12P GAIN WILD-TYPE     44     46     68     58
D23V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               10                 44
  CLUS_2               10                 46
  CLUS_3                4                 68
  CLUS_4               17                 58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       12     11      3     14
  12P GAIN WILD-TYPE     46     34     58     42
D23V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               12                 46
  CLUS_2               11                 34
  CLUS_3                3                 58
  CLUS_4               14                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12P GAIN MUTATED        5      6     14      5      5      5
  12P GAIN WILD-TYPE     19     29     35     63     17     17
D23V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                6                 29
  CLUS_3               14                 35
  CLUS_4                5                 63
  CLUS_5                5                 17
  CLUS_6                5                 17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       18      4     19
  12P GAIN WILD-TYPE     96     73     45
D23V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               18                 96
  CLUS_2                4                 73
  CLUS_3               19                 45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P GAIN MUTATED        7      1      4     13     10      0      6
  12P GAIN WILD-TYPE     40     20     45     33     20     29     27
D23V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                7                 40
  CLUS_2                1                 20
  CLUS_3                4                 45
  CLUS_4               13                 33
  CLUS_5               10                 20
  CLUS_6                0                 29
  CLUS_7                6                 27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       20     11      9
  12P GAIN WILD-TYPE     85     39     91
D23V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               20                 85
  CLUS_2               11                 39
  CLUS_3                9                 91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       16     10     12      2
  12P GAIN WILD-TYPE     66     27    102     20
D23V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               16                 66
  CLUS_2               10                 27
  CLUS_3               12                102
  CLUS_4                2                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED       14      2      2      6     11
  12P GAIN WILD-TYPE     44     25     45     17     28
D23V9, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               14                 44
  CLUS_2                2                 25
  CLUS_3                2                 45
  CLUS_4                6                 17
  CLUS_5               11                 28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED       11      2      5     11      6
  12P GAIN WILD-TYPE     47     47     16     31     18
D23V10, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               11                 47
  CLUS_2                2                 47
  CLUS_3                5                 16
  CLUS_4               11                 31
  CLUS_5                6                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       20      3      4      4
  12Q GAIN WILD-TYPE     75     57     35     59
D24V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               20                 75
  CLUS_2                3                 57
  CLUS_3                4                 35
  CLUS_4                4                 59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        8      7      3     13
  12Q GAIN WILD-TYPE     46     49     69     62
D24V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                8                 46
  CLUS_2                7                 49
  CLUS_3                3                 69
  CLUS_4               13                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        9     10      1     10
  12Q GAIN WILD-TYPE     49     35     60     46
D24V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                9                 49
  CLUS_2               10                 35
  CLUS_3                1                 60
  CLUS_4               10                 46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q GAIN MUTATED        4      6      9      4      3      4
  12Q GAIN WILD-TYPE     20     29     40     64     19     18
D24V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                6                 29
  CLUS_3                9                 40
  CLUS_4                4                 64
  CLUS_5                3                 19
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       16      3     12
  12Q GAIN WILD-TYPE     98     74     52
D24V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               16                 98
  CLUS_2                3                 74
  CLUS_3               12                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q GAIN MUTATED        9      1      2      8      7      1      3
  12Q GAIN WILD-TYPE     38     20     47     38     23     28     30
D24V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                9                 38
  CLUS_2                1                 20
  CLUS_3                2                 47
  CLUS_4                8                 38
  CLUS_5                7                 23
  CLUS_6                1                 28
  CLUS_7                3                 30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       15     10      5
  12Q GAIN WILD-TYPE     90     40     95
D24V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               15                 90
  CLUS_2               10                 40
  CLUS_3                5                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       12      8      8      2
  12Q GAIN WILD-TYPE     70     29    106     20
D24V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               12                 70
  CLUS_2                8                 29
  CLUS_3                8                106
  CLUS_4                2                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED       11      1      2      3     10
  12Q GAIN WILD-TYPE     47     26     45     20     29
D24V9, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               11                 47
  CLUS_2                1                 26
  CLUS_3                2                 45
  CLUS_4                3                 20
  CLUS_5               10                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED        8      1      4     10      4
  12Q GAIN WILD-TYPE     50     48     17     32     20
D24V10, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                8                 50
  CLUS_2                1                 48
  CLUS_3                4                 17
  CLUS_4               10                 32
  CLUS_5                4                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        2      1      2     10
  13Q GAIN WILD-TYPE     93     59     37     53
D25V1, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                1                 59
  CLUS_3                2                 37
  CLUS_4               10                 53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        0      2      8      5
  13Q GAIN WILD-TYPE     54     54     64     70
D25V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                0                 54
  CLUS_2                2                 54
  CLUS_3                8                 64
  CLUS_4                5                 70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        2      4      5      1
  13Q GAIN WILD-TYPE     56     41     56     55
D25V3, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                 56
  CLUS_2                4                 41
  CLUS_3                5                 56
  CLUS_4                1                 55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q GAIN MUTATED        1      0      3      7      1      0
  13Q GAIN WILD-TYPE     23     35     46     61     21     22
D25V4, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                0                 35
  CLUS_3                3                 46
  CLUS_4                7                 61
  CLUS_5                1                 21
  CLUS_6                0                 22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        6      8      1
  13Q GAIN WILD-TYPE    108     69     63
D25V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                6                108
  CLUS_2                8                 69
  CLUS_3                1                 63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q GAIN MUTATED        3      0      4      0      1      4      3
  13Q GAIN WILD-TYPE     44     21     45     46     29     25     30
D25V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                0                 21
  CLUS_3                4                 45
  CLUS_4                0                 46
  CLUS_5                1                 29
  CLUS_6                4                 25
  CLUS_7                3                 30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        5      1      8
  13Q GAIN WILD-TYPE    100     49     92
D25V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                5                100
  CLUS_2                1                 49
  CLUS_3                8                 92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        4      2      8      0
  13Q GAIN WILD-TYPE     78     35    106     22
D25V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                 78
  CLUS_2                2                 35
  CLUS_3                8                106
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        2      3      5      2      1
  13Q GAIN WILD-TYPE     56     24     42     21     38
D25V9, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                 56
  CLUS_2                3                 24
  CLUS_3                5                 42
  CLUS_4                2                 21
  CLUS_5                1                 38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        3      6      1      2      1
  13Q GAIN WILD-TYPE     55     43     20     40     23
D25V10, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                 55
  CLUS_2                6                 43
  CLUS_3                1                 20
  CLUS_4                2                 40
  CLUS_5                1                 23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED       27      1      6     22
  14Q GAIN WILD-TYPE     68     59     33     41
D26V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               27                 68
  CLUS_2                1                 59
  CLUS_3                6                 33
  CLUS_4               22                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        5      9     15     27
  14Q GAIN WILD-TYPE     49     47     57     48
D26V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                5                 49
  CLUS_2                9                 47
  CLUS_3               15                 57
  CLUS_4               27                 48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED       11     14      9     17
  14Q GAIN WILD-TYPE     47     31     52     39
D26V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               11                 47
  CLUS_2               14                 31
  CLUS_3                9                 52
  CLUS_4               17                 39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q GAIN MUTATED        9      4     24     10      1      3
  14Q GAIN WILD-TYPE     15     31     25     58     21     19
D26V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                9                 15
  CLUS_2                4                 31
  CLUS_3               24                 25
  CLUS_4               10                 58
  CLUS_5                1                 21
  CLUS_6                3                 19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       30     15     11
  14Q GAIN WILD-TYPE     84     62     53
D26V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               30                 84
  CLUS_2               15                 62
  CLUS_3               11                 53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q GAIN MUTATED       10      2     12      6     16      3      7
  14Q GAIN WILD-TYPE     37     19     37     40     14     26     26
D26V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               10                 37
  CLUS_2                2                 19
  CLUS_3               12                 37
  CLUS_4                6                 40
  CLUS_5               16                 14
  CLUS_6                3                 26
  CLUS_7                7                 26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       21     13     22
  14Q GAIN WILD-TYPE     84     37     78
D26V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               21                 84
  CLUS_2               13                 37
  CLUS_3               22                 78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED       21      7     25      3
  14Q GAIN WILD-TYPE     61     30     89     19
D26V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               21                 61
  CLUS_2                7                 30
  CLUS_3               25                 89
  CLUS_4                3                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED       11      2     13      7     14
  14Q GAIN WILD-TYPE     47     25     34     16     25
D26V9, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               11                 47
  CLUS_2                2                 25
  CLUS_3               13                 34
  CLUS_4                7                 16
  CLUS_5               14                 25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED       11     13      4     14      5
  14Q GAIN WILD-TYPE     47     36     17     28     19
D26V10, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               11                 47
  CLUS_2               13                 36
  CLUS_3                4                 17
  CLUS_4               14                 28
  CLUS_5                5                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED       29      2     11     20
  15Q GAIN WILD-TYPE     66     58     28     43
D27V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               29                 66
  CLUS_2                2                 58
  CLUS_3               11                 28
  CLUS_4               20                 43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED       10      7     24     21
  15Q GAIN WILD-TYPE     44     49     48     54
D27V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               10                 44
  CLUS_2                7                 49
  CLUS_3               24                 48
  CLUS_4               21                 54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED       11     11     14     14
  15Q GAIN WILD-TYPE     47     34     47     42
D27V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               11                 47
  CLUS_2               11                 34
  CLUS_3               14                 47
  CLUS_4               14                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q GAIN MUTATED        5      7     15     16      3      4
  15Q GAIN WILD-TYPE     19     28     34     52     19     18
D27V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                7                 28
  CLUS_3               15                 34
  CLUS_4               16                 52
  CLUS_5                3                 19
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       25     25     12
  15Q GAIN WILD-TYPE     89     52     52
D27V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               25                 89
  CLUS_2               25                 52
  CLUS_3               12                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q GAIN MUTATED       12      2     19      9     11      5      4
  15Q GAIN WILD-TYPE     35     19     30     37     19     24     29
D27V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               12                 35
  CLUS_2                2                 19
  CLUS_3               19                 30
  CLUS_4                9                 37
  CLUS_5               11                 19
  CLUS_6                5                 24
  CLUS_7                4                 29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       19     12     29
  15Q GAIN WILD-TYPE     86     38     71
D27V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               19                 86
  CLUS_2               12                 38
  CLUS_3               29                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED       17      5     34      4
  15Q GAIN WILD-TYPE     65     32     80     18
D27V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               17                 65
  CLUS_2                5                 32
  CLUS_3               34                 80
  CLUS_4                4                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED       10      3     17      8     10
  15Q GAIN WILD-TYPE     48     24     30     15     29
D27V9, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               10                 48
  CLUS_2                3                 24
  CLUS_3               17                 30
  CLUS_4                8                 15
  CLUS_5               10                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        8     18      7     10      5
  15Q GAIN WILD-TYPE     50     31     14     32     19
D27V10, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                8                 50
  CLUS_2               18                 31
  CLUS_3                7                 14
  CLUS_4               10                 32
  CLUS_5                5                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED       22      1      1     16
  16P GAIN WILD-TYPE     73     59     38     47
D28V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               22                 73
  CLUS_2                1                 59
  CLUS_3                1                 38
  CLUS_4               16                 47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        6      8      9     17
  16P GAIN WILD-TYPE     48     48     63     58
D28V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                6                 48
  CLUS_2                8                 48
  CLUS_3                9                 63
  CLUS_4               17                 58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED       10     10      5      9
  16P GAIN WILD-TYPE     48     35     56     47
D28V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               10                 48
  CLUS_2               10                 35
  CLUS_3                5                 56
  CLUS_4                9                 47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P GAIN MUTATED        5      7     11      5      2      4
  16P GAIN WILD-TYPE     19     28     38     63     20     18
D28V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                7                 28
  CLUS_3               11                 38
  CLUS_4                5                 63
  CLUS_5                2                 20
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       24      9      7
  16P GAIN WILD-TYPE     90     68     57
D28V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               24                 90
  CLUS_2                9                 68
  CLUS_3                7                 57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P GAIN MUTATED       12      1      5      9      6      4      3
  16P GAIN WILD-TYPE     35     20     44     37     24     25     30
D28V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               12                 35
  CLUS_2                1                 20
  CLUS_3                5                 44
  CLUS_4                9                 37
  CLUS_5                6                 24
  CLUS_6                4                 25
  CLUS_7                3                 30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       17      7     16
  16P GAIN WILD-TYPE     88     43     84
D28V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               17                 88
  CLUS_2                7                 43
  CLUS_3               16                 84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED       17      4     18      1
  16P GAIN WILD-TYPE     65     33     96     21
D28V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               17                 65
  CLUS_2                4                 33
  CLUS_3               18                 96
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED       10      7      6      6      7
  16P GAIN WILD-TYPE     48     20     41     17     32
D28V9, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               10                 48
  CLUS_2                7                 20
  CLUS_3                6                 41
  CLUS_4                6                 17
  CLUS_5                7                 32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED       11      8      6      7      4
  16P GAIN WILD-TYPE     47     41     15     35     20
D28V10, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               11                 47
  CLUS_2                8                 41
  CLUS_3                6                 15
  CLUS_4                7                 35
  CLUS_5                4                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED       10      2      0      7
  16Q GAIN WILD-TYPE     85     58     39     56
D29V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               10                 85
  CLUS_2                2                 58
  CLUS_3                0                 39
  CLUS_4                7                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        4      3      1     11
  16Q GAIN WILD-TYPE     50     53     71     64
D29V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                3                 53
  CLUS_3                1                 71
  CLUS_4               11                 64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        5      5      0      6
  16Q GAIN WILD-TYPE     53     40     61     50
D29V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                5                 53
  CLUS_2                5                 40
  CLUS_3                0                 61
  CLUS_4                6                 50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q GAIN MUTATED        4      1      9      0      0      2
  16Q GAIN WILD-TYPE     20     34     40     68     22     20
D29V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                1                 34
  CLUS_3                9                 40
  CLUS_4                0                 68
  CLUS_5                0                 22
  CLUS_6                2                 20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       14      1      4
  16Q GAIN WILD-TYPE    100     76     60
D29V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               14                100
  CLUS_2                1                 76
  CLUS_3                4                 60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q GAIN MUTATED        5      1      0      4      4      1      4
  16Q GAIN WILD-TYPE     42     20     49     42     26     28     29
D29V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                5                 42
  CLUS_2                1                 20
  CLUS_3                0                 49
  CLUS_4                4                 42
  CLUS_5                4                 26
  CLUS_6                1                 28
  CLUS_7                4                 29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        8      4      7
  16Q GAIN WILD-TYPE     97     46     93
D29V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                8                 97
  CLUS_2                4                 46
  CLUS_3                7                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        7      2      9      1
  16Q GAIN WILD-TYPE     75     35    105     21
D29V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                7                 75
  CLUS_2                2                 35
  CLUS_3                9                105
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        5      4      0      3      4
  16Q GAIN WILD-TYPE     53     23     47     20     35
D29V9, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                5                 53
  CLUS_2                4                 23
  CLUS_3                0                 47
  CLUS_4                3                 20
  CLUS_5                4                 35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        6      0      6      1      3
  16Q GAIN WILD-TYPE     52     49     15     41     21
D29V10, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                6                 52
  CLUS_2                0                 49
  CLUS_3                6                 15
  CLUS_4                1                 41
  CLUS_5                3                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED       34      2      4     21
  17P GAIN WILD-TYPE     61     58     35     42
D30V1, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               34                 61
  CLUS_2                2                 58
  CLUS_3                4                 35
  CLUS_4               21                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        9      8     10     34
  17P GAIN WILD-TYPE     45     48     62     41
D30V2, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                9                 45
  CLUS_2                8                 48
  CLUS_3               10                 62
  CLUS_4               34                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED       11     14      8     20
  17P GAIN WILD-TYPE     47     31     53     36
D30V3, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               11                 47
  CLUS_2               14                 31
  CLUS_3                8                 53
  CLUS_4               20                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P GAIN MUTATED        9      8     16      9      7      4
  17P GAIN WILD-TYPE     15     27     33     59     15     18
D30V4, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                9                 15
  CLUS_2                8                 27
  CLUS_3               16                 33
  CLUS_4                9                 59
  CLUS_5                7                 15
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       36     12     12
  17P GAIN WILD-TYPE     78     65     52
D30V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               36                 78
  CLUS_2               12                 65
  CLUS_3               12                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P GAIN MUTATED       19      3      6      8     11      6      7
  17P GAIN WILD-TYPE     28     18     43     38     19     23     26
D30V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               19                 28
  CLUS_2                3                 18
  CLUS_3                6                 43
  CLUS_4                8                 38
  CLUS_5               11                 19
  CLUS_6                6                 23
  CLUS_7                7                 26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       26     17     18
  17P GAIN WILD-TYPE     79     33     82
D30V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               26                 79
  CLUS_2               17                 33
  CLUS_3               18                 82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED       24     14     22      1
  17P GAIN WILD-TYPE     58     23     92     21
D30V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               24                 58
  CLUS_2               14                 23
  CLUS_3               22                 92
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED       11      7      8      7     14
  17P GAIN WILD-TYPE     47     20     39     16     25
D30V9, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               11                 47
  CLUS_2                7                 20
  CLUS_3                8                 39
  CLUS_4                7                 16
  CLUS_5               14                 25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED       15      7      7     16      2
  17P GAIN WILD-TYPE     43     42     14     26     22
D30V10, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               15                 43
  CLUS_2                7                 42
  CLUS_3                7                 14
  CLUS_4               16                 26
  CLUS_5                2                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED       25      1      7     23
  17Q GAIN WILD-TYPE     70     59     32     40
D31V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               25                 70
  CLUS_2                1                 59
  CLUS_3                7                 32
  CLUS_4               23                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        9      7     10     30
  17Q GAIN WILD-TYPE     45     49     62     45
D31V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                9                 45
  CLUS_2                7                 49
  CLUS_3               10                 62
  CLUS_4               30                 45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED       13     11      7     17
  17Q GAIN WILD-TYPE     45     34     54     39
D31V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               13                 45
  CLUS_2               11                 34
  CLUS_3                7                 54
  CLUS_4               17                 39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q GAIN MUTATED       11      6     15      7      5      4
  17Q GAIN WILD-TYPE     13     29     34     61     17     18
D31V4, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               11                 13
  CLUS_2                6                 29
  CLUS_3               15                 34
  CLUS_4                7                 61
  CLUS_5                5                 17
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       32     12     11
  17Q GAIN WILD-TYPE     82     65     53
D31V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               32                 82
  CLUS_2               12                 65
  CLUS_3               11                 53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q GAIN MUTATED       17      2      4      6     11      8      7
  17Q GAIN WILD-TYPE     30     19     45     40     19     21     26
D31V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               17                 30
  CLUS_2                2                 19
  CLUS_3                4                 45
  CLUS_4                6                 40
  CLUS_5               11                 19
  CLUS_6                8                 21
  CLUS_7                7                 26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       22     17     17
  17Q GAIN WILD-TYPE     83     33     83
D31V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               22                 83
  CLUS_2               17                 33
  CLUS_3               17                 83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED       22     12     21      1
  17Q GAIN WILD-TYPE     60     25     93     21
D31V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               22                 60
  CLUS_2               12                 25
  CLUS_3               21                 93
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED        9      8     10      8     13
  17Q GAIN WILD-TYPE     49     19     37     15     26
D31V9, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                9                 49
  CLUS_2                8                 19
  CLUS_3               10                 37
  CLUS_4                8                 15
  CLUS_5               13                 26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED       12      9      7     18      2
  17Q GAIN WILD-TYPE     46     40     14     24     22
D31V10, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               12                 46
  CLUS_2                9                 40
  CLUS_3                7                 14
  CLUS_4               18                 24
  CLUS_5                2                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED       24      2      6     20
  18P GAIN WILD-TYPE     71     58     33     43
D32V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               24                 71
  CLUS_2                2                 58
  CLUS_3                6                 33
  CLUS_4               20                 43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        9      6     12     25
  18P GAIN WILD-TYPE     45     50     60     50
D32V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                9                 45
  CLUS_2                6                 50
  CLUS_3               12                 60
  CLUS_4               25                 50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED       13     12      9     14
  18P GAIN WILD-TYPE     45     33     52     42
D32V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               13                 45
  CLUS_2               12                 33
  CLUS_3                9                 52
  CLUS_4               14                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P GAIN MUTATED        9      6     13     11      6      3
  18P GAIN WILD-TYPE     15     29     36     57     16     19
D32V4, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                9                 15
  CLUS_2                6                 29
  CLUS_3               13                 36
  CLUS_4               11                 57
  CLUS_5                6                 16
  CLUS_6                3                 19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       30     13      9
  18P GAIN WILD-TYPE     84     64     55
D32V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               30                 84
  CLUS_2               13                 64
  CLUS_3                9                 55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P GAIN MUTATED       15      5      7      7      7      5      6
  18P GAIN WILD-TYPE     32     16     42     39     23     24     27
D32V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               15                 32
  CLUS_2                5                 16
  CLUS_3                7                 42
  CLUS_4                7                 39
  CLUS_5                7                 23
  CLUS_6                5                 24
  CLUS_7                6                 27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       21     14     17
  18P GAIN WILD-TYPE     84     36     83
D32V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               21                 84
  CLUS_2               14                 36
  CLUS_3               17                 83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED       20      8     23      1
  18P GAIN WILD-TYPE     62     29     91     21
D32V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               20                 62
  CLUS_2                8                 29
  CLUS_3               23                 91
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED       10      6      9      7     12
  18P GAIN WILD-TYPE     48     21     38     16     27
D32V9, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               10                 48
  CLUS_2                6                 21
  CLUS_3                9                 38
  CLUS_4                7                 16
  CLUS_5               12                 27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED       13     10      6     13      2
  18P GAIN WILD-TYPE     45     39     15     29     22
D32V10, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               13                 45
  CLUS_2               10                 39
  CLUS_3                6                 15
  CLUS_4               13                 29
  CLUS_5                2                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED       16      2      4     15
  18Q GAIN WILD-TYPE     79     58     35     48
D33V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               16                 79
  CLUS_2                2                 58
  CLUS_3                4                 35
  CLUS_4               15                 48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        6      5     13     13
  18Q GAIN WILD-TYPE     48     51     59     62
D33V2, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                6                 48
  CLUS_2                5                 51
  CLUS_3               13                 59
  CLUS_4               13                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED       12      8     10      4
  18Q GAIN WILD-TYPE     46     37     51     52
D33V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               12                 46
  CLUS_2                8                 37
  CLUS_3               10                 51
  CLUS_4                4                 52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q GAIN MUTATED        8      2      6     12      3      3
  18Q GAIN WILD-TYPE     16     33     43     56     19     19
D33V4, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                2                 33
  CLUS_3                6                 43
  CLUS_4               12                 56
  CLUS_5                3                 19
  CLUS_6                3                 19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       17     13      7
  18Q GAIN WILD-TYPE     97     64     57
D33V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               17                 97
  CLUS_2               13                 64
  CLUS_3                7                 57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q GAIN MUTATED       12      2      7      5      2      6      3
  18Q GAIN WILD-TYPE     35     19     42     41     28     23     30
D33V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               12                 35
  CLUS_2                2                 19
  CLUS_3                7                 42
  CLUS_4                5                 41
  CLUS_5                2                 28
  CLUS_6                6                 23
  CLUS_7                3                 30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       17      5     15
  18Q GAIN WILD-TYPE     88     45     85
D33V7, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               17                 88
  CLUS_2                5                 45
  CLUS_3               15                 85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED       14      6     17      0
  18Q GAIN WILD-TYPE     68     31     97     22
D33V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               14                 68
  CLUS_2                6                 31
  CLUS_3               17                 97
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        9      4      8      6      3
  18Q GAIN WILD-TYPE     49     23     39     17     36
D33V9, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                9                 49
  CLUS_2                4                 23
  CLUS_3                8                 39
  CLUS_4                6                 17
  CLUS_5                3                 36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        9     10      3      5      3
  18Q GAIN WILD-TYPE     49     39     18     37     21
D33V10, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                9                 49
  CLUS_2               10                 39
  CLUS_3                3                 18
  CLUS_4                5                 37
  CLUS_5                3                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       57      3      6     22
  19P GAIN WILD-TYPE     38     57     33     41
D34V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               57                 38
  CLUS_2                3                 57
  CLUS_3                6                 33
  CLUS_4               22                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       18     14     20     36
  19P GAIN WILD-TYPE     36     42     52     39
D34V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               18                 36
  CLUS_2               14                 42
  CLUS_3               20                 52
  CLUS_4               36                 39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       25     18     17     20
  19P GAIN WILD-TYPE     33     27     44     36
D34V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               25                 33
  CLUS_2               18                 27
  CLUS_3               17                 44
  CLUS_4               20                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P GAIN MUTATED       15     11     22     19      9      4
  19P GAIN WILD-TYPE      9     24     27     49     13     18
D34V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               15                  9
  CLUS_2               11                 24
  CLUS_3               22                 27
  CLUS_4               19                 49
  CLUS_5                9                 13
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       47     21     20
  19P GAIN WILD-TYPE     67     56     44
D34V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               47                 67
  CLUS_2               21                 56
  CLUS_3               20                 44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P GAIN MUTATED       28      6     13     13     13      9      6
  19P GAIN WILD-TYPE     19     15     36     33     17     20     27
D34V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               28                 19
  CLUS_2                6                 15
  CLUS_3               13                 36
  CLUS_4               13                 33
  CLUS_5               13                 17
  CLUS_6                9                 20
  CLUS_7                6                 27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       38     15     35
  19P GAIN WILD-TYPE     67     35     65
D34V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               38                 67
  CLUS_2               15                 35
  CLUS_3               35                 65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       32     14     38      4
  19P GAIN WILD-TYPE     50     23     76     18
D34V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               32                 50
  CLUS_2               14                 23
  CLUS_3               38                 76
  CLUS_4                4                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED       19     12     15     10     12
  19P GAIN WILD-TYPE     39     15     32     13     27
D34V9, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               19                 39
  CLUS_2               12                 15
  CLUS_3               15                 32
  CLUS_4               10                 13
  CLUS_5               12                 27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED       25     15      8     15      5
  19P GAIN WILD-TYPE     33     34     13     27     19
D34V10, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               25                 33
  CLUS_2               15                 34
  CLUS_3                8                 13
  CLUS_4               15                 27
  CLUS_5                5                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       39      2      3     20
  19Q GAIN WILD-TYPE     56     58     36     43
D35V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               39                 56
  CLUS_2                2                 58
  CLUS_3                3                 36
  CLUS_4               20                 43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       14      6     11     33
  19Q GAIN WILD-TYPE     40     50     61     42
D35V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               14                 40
  CLUS_2                6                 50
  CLUS_3               11                 61
  CLUS_4               33                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       22     13      8     14
  19Q GAIN WILD-TYPE     36     32     53     42
D35V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               22                 36
  CLUS_2               13                 32
  CLUS_3                8                 53
  CLUS_4               14                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q GAIN MUTATED       14      9     18      8      6      2
  19Q GAIN WILD-TYPE     10     26     31     60     16     20
D35V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               14                 10
  CLUS_2                9                 26
  CLUS_3               18                 31
  CLUS_4                8                 60
  CLUS_5                6                 16
  CLUS_6                2                 20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       40     11     13
  19Q GAIN WILD-TYPE     74     66     51
D35V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               40                 74
  CLUS_2               11                 66
  CLUS_3               13                 51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q GAIN MUTATED       24      4      7      6     12      4      7
  19Q GAIN WILD-TYPE     23     17     42     40     18     25     26
D35V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               24                 23
  CLUS_2                4                 17
  CLUS_3                7                 42
  CLUS_4                6                 40
  CLUS_5               12                 18
  CLUS_6                4                 25
  CLUS_7                7                 26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       29     12     23
  19Q GAIN WILD-TYPE     76     38     77
D35V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               29                 76
  CLUS_2               12                 38
  CLUS_3               23                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       26      9     27      2
  19Q GAIN WILD-TYPE     56     28     87     20
D35V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               26                 56
  CLUS_2                9                 28
  CLUS_3               27                 87
  CLUS_4                2                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED       13     11      9      7     11
  19Q GAIN WILD-TYPE     45     16     38     16     28
D35V9, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               13                 45
  CLUS_2               11                 16
  CLUS_3                9                 38
  CLUS_4                7                 16
  CLUS_5               11                 28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED       20     10      9     11      1
  19Q GAIN WILD-TYPE     38     39     12     31     23
D35V10, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               20                 38
  CLUS_2               10                 39
  CLUS_3                9                 12
  CLUS_4               11                 31
  CLUS_5                1                 23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       38      1      9     14
  20P GAIN WILD-TYPE     57     59     30     49
D36V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               38                 57
  CLUS_2                1                 59
  CLUS_3                9                 30
  CLUS_4               14                 49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        8      9     15     30
  20P GAIN WILD-TYPE     46     47     57     45
D36V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                8                 46
  CLUS_2                9                 47
  CLUS_3               15                 57
  CLUS_4               30                 45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       13     16     13     15
  20P GAIN WILD-TYPE     45     29     48     41
D36V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               13                 45
  CLUS_2               16                 29
  CLUS_3               13                 48
  CLUS_4               15                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P GAIN MUTATED        5      9     20     13      4      6
  20P GAIN WILD-TYPE     19     26     29     55     18     16
D36V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                9                 26
  CLUS_3               20                 29
  CLUS_4               13                 55
  CLUS_5                4                 18
  CLUS_6                6                 16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       32     16     14
  20P GAIN WILD-TYPE     82     61     50
D36V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               32                 82
  CLUS_2               16                 61
  CLUS_3               14                 50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P GAIN MUTATED       18      1     11      8     10      5      9
  20P GAIN WILD-TYPE     29     20     38     38     20     24     24
D36V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               18                 29
  CLUS_2                1                 20
  CLUS_3               11                 38
  CLUS_4                8                 38
  CLUS_5               10                 20
  CLUS_6                5                 24
  CLUS_7                9                 24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       24     14     23
  20P GAIN WILD-TYPE     81     36     77
D36V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               24                 81
  CLUS_2               14                 36
  CLUS_3               23                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       23      8     29      1
  20P GAIN WILD-TYPE     59     29     85     21
D36V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               23                 59
  CLUS_2                8                 29
  CLUS_3               29                 85
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED        9     10      9      9     14
  20P GAIN WILD-TYPE     49     17     38     14     25
D36V9, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                9                 49
  CLUS_2               10                 17
  CLUS_3                9                 38
  CLUS_4                9                 14
  CLUS_5               14                 25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED       16     11      7     14      3
  20P GAIN WILD-TYPE     42     38     14     28     21
D36V10, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               16                 42
  CLUS_2               11                 38
  CLUS_3                7                 14
  CLUS_4               14                 28
  CLUS_5                3                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       53      2      9     19
  20Q GAIN WILD-TYPE     42     58     30     44
D37V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               53                 42
  CLUS_2                2                 58
  CLUS_3                9                 30
  CLUS_4               19                 44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       11     12     15     45
  20Q GAIN WILD-TYPE     43     44     57     30
D37V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               11                 43
  CLUS_2               12                 44
  CLUS_3               15                 57
  CLUS_4               45                 30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       16     23     14     24
  20Q GAIN WILD-TYPE     42     22     47     32
D37V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               16                 42
  CLUS_2               23                 22
  CLUS_3               14                 47
  CLUS_4               24                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20Q GAIN MUTATED        9     11     28     14      7      8
  20Q GAIN WILD-TYPE     15     24     21     54     15     14
D37V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                9                 15
  CLUS_2               11                 24
  CLUS_3               28                 21
  CLUS_4               14                 54
  CLUS_5                7                 15
  CLUS_6                8                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       44     17     22
  20Q GAIN WILD-TYPE     70     60     42
D37V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               44                 70
  CLUS_2               17                 60
  CLUS_3               22                 42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q GAIN MUTATED       20      5     12     14     16      4     12
  20Q GAIN WILD-TYPE     27     16     37     32     14     25     21
D37V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               20                 27
  CLUS_2                5                 16
  CLUS_3               12                 37
  CLUS_4               14                 32
  CLUS_5               16                 14
  CLUS_6                4                 25
  CLUS_7               12                 21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       34     21     28
  20Q GAIN WILD-TYPE     71     29     72
D37V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               34                 71
  CLUS_2               21                 29
  CLUS_3               28                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       34     13     35      1
  20Q GAIN WILD-TYPE     48     24     79     21
D37V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               34                 48
  CLUS_2               13                 24
  CLUS_3               35                 79
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED       13     13     11     11     20
  20Q GAIN WILD-TYPE     45     14     36     12     19
D37V9, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               13                 45
  CLUS_2               13                 14
  CLUS_3               11                 36
  CLUS_4               11                 12
  CLUS_5               20                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED       22     12     10     21      3
  20Q GAIN WILD-TYPE     36     37     11     21     21
D37V10, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               22                 36
  CLUS_2               12                 37
  CLUS_3               10                 11
  CLUS_4               21                 21
  CLUS_5                3                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED       26      2      5     26
  21Q GAIN WILD-TYPE     69     58     34     37
D38V1, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               26                 69
  CLUS_2                2                 58
  CLUS_3                5                 34
  CLUS_4               26                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        6     10     15     28
  21Q GAIN WILD-TYPE     48     46     57     47
D38V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                6                 48
  CLUS_2               10                 46
  CLUS_3               15                 57
  CLUS_4               28                 47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED       15     15     10     12
  21Q GAIN WILD-TYPE     43     30     51     44
D38V3, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               15                 43
  CLUS_2               15                 30
  CLUS_3               10                 51
  CLUS_4               12                 44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  21Q GAIN MUTATED       10      3     16     13      3      7
  21Q GAIN WILD-TYPE     14     32     33     55     19     15
D38V4, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               10                 14
  CLUS_2                3                 32
  CLUS_3               16                 33
  CLUS_4               13                 55
  CLUS_5                3                 19
  CLUS_6                7                 15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       29     16     14
  21Q GAIN WILD-TYPE     85     61     50
D38V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               29                 85
  CLUS_2               16                 61
  CLUS_3               14                 50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q GAIN MUTATED       15      3      9     10      9      6      7
  21Q GAIN WILD-TYPE     32     18     40     36     21     23     26
D38V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               15                 32
  CLUS_2                3                 18
  CLUS_3                9                 40
  CLUS_4               10                 36
  CLUS_5                9                 21
  CLUS_6                6                 23
  CLUS_7                7                 26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       23     13     22
  21Q GAIN WILD-TYPE     82     37     78
D38V7, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               23                 82
  CLUS_2               13                 37
  CLUS_3               22                 78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED       18      9     28      3
  21Q GAIN WILD-TYPE     64     28     86     19
D38V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               18                 64
  CLUS_2                9                 28
  CLUS_3               28                 86
  CLUS_4                3                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q GAIN MUTATED        7      8     11      9     12
  21Q GAIN WILD-TYPE     51     19     36     14     27
D38V9, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                7                 51
  CLUS_2                8                 19
  CLUS_3               11                 36
  CLUS_4                9                 14
  CLUS_5               12                 27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q GAIN MUTATED       11     11      8     13      4
  21Q GAIN WILD-TYPE     47     38     13     29     20
D38V10, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               11                 47
  CLUS_2               11                 38
  CLUS_3                8                 13
  CLUS_4               13                 29
  CLUS_5                4                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED       31      2     10     15
  22Q GAIN WILD-TYPE     64     58     29     48
D39V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               31                 64
  CLUS_2                2                 58
  CLUS_3               10                 29
  CLUS_4               15                 48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED       10      4     15     29
  22Q GAIN WILD-TYPE     44     52     57     46
D39V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               10                 44
  CLUS_2                4                 52
  CLUS_3               15                 57
  CLUS_4               29                 46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        8     19     12     11
  22Q GAIN WILD-TYPE     50     26     49     45
D39V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                8                 50
  CLUS_2               19                 26
  CLUS_3               12                 49
  CLUS_4               11                 45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q GAIN MUTATED        4      3     23     13      5      2
  22Q GAIN WILD-TYPE     20     32     26     55     17     20
D39V4, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                3                 32
  CLUS_3               23                 26
  CLUS_4               13                 55
  CLUS_5                5                 17
  CLUS_6                2                 20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       34     15      9
  22Q GAIN WILD-TYPE     80     62     55
D39V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               34                 80
  CLUS_2               15                 62
  CLUS_3                9                 55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q GAIN MUTATED       11      3     11      4     13      4     12
  22Q GAIN WILD-TYPE     36     18     38     42     17     25     21
D39V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               11                 36
  CLUS_2                3                 18
  CLUS_3               11                 38
  CLUS_4                4                 42
  CLUS_5               13                 17
  CLUS_6                4                 25
  CLUS_7               12                 21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       20     11     25
  22Q GAIN WILD-TYPE     85     39     75
D39V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               20                 85
  CLUS_2               11                 39
  CLUS_3               25                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED       20      6     29      1
  22Q GAIN WILD-TYPE     62     31     85     21
D39V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               20                 62
  CLUS_2                6                 31
  CLUS_3               29                 85
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        8      4      9     10     14
  22Q GAIN WILD-TYPE     50     23     38     13     25
D39V9, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                8                 50
  CLUS_2                4                 23
  CLUS_3                9                 38
  CLUS_4               10                 13
  CLUS_5               14                 25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED       10     11      9     13      2
  22Q GAIN WILD-TYPE     48     38     12     29     22
D39V10, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               10                 48
  CLUS_2               11                 38
  CLUS_3                9                 12
  CLUS_4               13                 29
  CLUS_5                2                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = XP GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED       36      6      9     23
  XP GAIN WILD-TYPE     59     54     30     40
D40V1, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              36                59
  CLUS_2               6                54
  CLUS_3               9                30
  CLUS_4              23                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED       10     16     20     28
  XP GAIN WILD-TYPE     44     40     52     47
D40V2, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              10                44
  CLUS_2              16                40
  CLUS_3              20                52
  CLUS_4              28                47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED       21     14     14     15
  XP GAIN WILD-TYPE     37     31     47     41
D40V3, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              21                37
  CLUS_2              14                31
  CLUS_3              14                47
  CLUS_4              15                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XP GAIN MUTATED       10      8     17     18      5      6
  XP GAIN WILD-TYPE     14     27     32     50     17     16
D40V4, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              10                14
  CLUS_2               8                27
  CLUS_3              17                32
  CLUS_4              18                50
  CLUS_5               5                17
  CLUS_6               6                16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED       35     21     18
  XP GAIN WILD-TYPE     79     56     46
D40V5, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              35                79
  CLUS_2              21                56
  CLUS_3              18                46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP GAIN MUTATED       20      4     15     10     11      5      9
  XP GAIN WILD-TYPE     27     17     34     36     19     24     24
D40V6, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              20                27
  CLUS_2               4                17
  CLUS_3              15                34
  CLUS_4              10                36
  CLUS_5              11                19
  CLUS_6               5                24
  CLUS_7               9                24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED       27     19     27
  XP GAIN WILD-TYPE     78     31     73
D40V7, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              27                78
  CLUS_2              19                31
  CLUS_3              27                73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED       22     12     34      5
  XP GAIN WILD-TYPE     60     25     80     17
D40V8, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              22                60
  CLUS_2              12                25
  CLUS_3              34                80
  CLUS_4               5                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP GAIN MUTATED       15     10     12     10     13
  XP GAIN WILD-TYPE     43     17     35     13     26
D40V9, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              15                43
  CLUS_2              10                17
  CLUS_3              12                35
  CLUS_4              10                13
  CLUS_5              13                26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP GAIN MUTATED       16     13      9     17      5
  XP GAIN WILD-TYPE     42     36     12     25     19
D40V10, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1              16                42
  CLUS_2              13                36
  CLUS_3               9                12
  CLUS_4              17                25
  CLUS_5               5                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED       20      4      2      8
  XQ GAIN WILD-TYPE     75     56     37     55
D41V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              20                75
  CLUS_2               4                56
  CLUS_3               2                37
  CLUS_4               8                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        5     10      6     13
  XQ GAIN WILD-TYPE     49     46     66     62
D41V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               5                49
  CLUS_2              10                46
  CLUS_3               6                66
  CLUS_4              13                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED       11      7      4      9
  XQ GAIN WILD-TYPE     47     38     57     47
D41V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              11                47
  CLUS_2               7                38
  CLUS_3               4                57
  CLUS_4               9                47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ GAIN MUTATED        4      6      9      7      1      4
  XQ GAIN WILD-TYPE     20     29     40     61     21     18
D41V4, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               6                29
  CLUS_3               9                40
  CLUS_4               7                61
  CLUS_5               1                21
  CLUS_6               4                18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       17      6     11
  XQ GAIN WILD-TYPE     97     71     53
D41V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              17                97
  CLUS_2               6                71
  CLUS_3              11                53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ GAIN MUTATED        6      2      4      7     10      2      3
  XQ GAIN WILD-TYPE     41     19     45     39     20     27     30
D41V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               6                41
  CLUS_2               2                19
  CLUS_3               4                45
  CLUS_4               7                39
  CLUS_5              10                20
  CLUS_6               2                27
  CLUS_7               3                30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       16     10      7
  XQ GAIN WILD-TYPE     89     40     93
D41V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              16                89
  CLUS_2              10                40
  CLUS_3               7                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED       12      7     11      3
  XQ GAIN WILD-TYPE     70     30    103     19
D41V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              12                70
  CLUS_2               7                30
  CLUS_3              11               103
  CLUS_4               3                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        8      3      3      4      9
  XQ GAIN WILD-TYPE     50     24     44     19     30
D41V9, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               8                50
  CLUS_2               3                24
  CLUS_3               3                44
  CLUS_4               4                19
  CLUS_5               9                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        6      4      3      9      5
  XQ GAIN WILD-TYPE     52     45     18     33     19
D41V10, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               6                52
  CLUS_2               4                45
  CLUS_3               3                18
  CLUS_4               9                33
  CLUS_5               5                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED       14      3      8      7
  1P LOSS WILD-TYPE     81     57     31     56
D42V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              14                81
  CLUS_2               3                57
  CLUS_3               8                31
  CLUS_4               7                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        4     11      7     10
  1P LOSS WILD-TYPE     50     45     65     65
D42V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               4                50
  CLUS_2              11                45
  CLUS_3               7                65
  CLUS_4              10                65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        8      4     11      6
  1P LOSS WILD-TYPE     50     41     50     50
D42V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               8                50
  CLUS_2               4                41
  CLUS_3              11                50
  CLUS_4               6                50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P LOSS MUTATED        3      3      7     10      2      4
  1P LOSS WILD-TYPE     21     32     42     58     20     18
D42V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               3                32
  CLUS_3               7                42
  CLUS_4              10                58
  CLUS_5               2                20
  CLUS_6               4                18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       14     10      8
  1P LOSS WILD-TYPE    100     67     56
D42V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              14               100
  CLUS_2              10                67
  CLUS_3               8                56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P LOSS MUTATED        7      1      4      6      3      7      4
  1P LOSS WILD-TYPE     40     20     45     40     27     22     29
D42V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               7                40
  CLUS_2               1                20
  CLUS_3               4                45
  CLUS_4               6                40
  CLUS_5               3                27
  CLUS_6               7                22
  CLUS_7               4                29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       14      6     12
  1P LOSS WILD-TYPE     91     44     88
D42V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              14                91
  CLUS_2               6                44
  CLUS_3              12                88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED       12      5     11      4
  1P LOSS WILD-TYPE     70     32    103     18
D42V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12                70
  CLUS_2               5                32
  CLUS_3              11               103
  CLUS_4               4                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED        9      3      6      2      4
  1P LOSS WILD-TYPE     49     24     41     21     35
D42V9, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               9                49
  CLUS_2               3                24
  CLUS_3               6                41
  CLUS_4               2                21
  CLUS_5               4                35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED        9      4      1      5      5
  1P LOSS WILD-TYPE     49     45     20     37     19
D42V10, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               9                49
  CLUS_2               4                45
  CLUS_3               1                20
  CLUS_4               5                37
  CLUS_5               5                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED       20      2      5     13
  1Q LOSS WILD-TYPE     75     58     34     50
D43V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              20                75
  CLUS_2               2                58
  CLUS_3               5                34
  CLUS_4              13                50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        9      7      5     19
  1Q LOSS WILD-TYPE     45     49     67     56
D43V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               9                45
  CLUS_2               7                49
  CLUS_3               5                67
  CLUS_4              19                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED       11     10      6     11
  1Q LOSS WILD-TYPE     47     35     55     45
D43V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              11                47
  CLUS_2              10                35
  CLUS_3               6                55
  CLUS_4              11                45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q LOSS MUTATED        7      5     13      6      3      4
  1Q LOSS WILD-TYPE     17     30     36     62     19     18
D43V4, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               7                17
  CLUS_2               5                30
  CLUS_3              13                36
  CLUS_4               6                62
  CLUS_5               3                19
  CLUS_6               4                18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       24      7      9
  1Q LOSS WILD-TYPE     90     70     55
D43V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              24                90
  CLUS_2               7                70
  CLUS_3               9                55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q LOSS MUTATED       12      2      4      6      7      3      6
  1Q LOSS WILD-TYPE     35     19     45     40     23     26     27
D43V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              12                35
  CLUS_2               2                19
  CLUS_3               4                45
  CLUS_4               6                40
  CLUS_5               7                23
  CLUS_6               3                26
  CLUS_7               6                27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       20     11      9
  1Q LOSS WILD-TYPE     85     39     91
D43V7, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              20                85
  CLUS_2              11                39
  CLUS_3               9                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED       21      6     12      1
  1Q LOSS WILD-TYPE     61     31    102     21
D43V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              21                61
  CLUS_2               6                31
  CLUS_3              12               102
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED       12      7      4      0      8
  1Q LOSS WILD-TYPE     46     20     43     23     31
D43V9, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              12                46
  CLUS_2               7                20
  CLUS_3               4                43
  CLUS_4               0                23
  CLUS_5               8                31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED       16      3      1     10      1
  1Q LOSS WILD-TYPE     42     46     20     32     23
D43V10, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              16                42
  CLUS_2               3                46
  CLUS_3               1                20
  CLUS_4              10                32
  CLUS_5               1                23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = 2P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED       36      2     12     42
  2P LOSS WILD-TYPE     59     58     27     21
D44V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              36                59
  CLUS_2               2                58
  CLUS_3              12                27
  CLUS_4              42                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED       12     12     40     28
  2P LOSS WILD-TYPE     42     44     32     47
D44V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              12                42
  CLUS_2              12                44
  CLUS_3              40                32
  CLUS_4              28                47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED       17     15     30     16
  2P LOSS WILD-TYPE     41     30     31     40
D44V3, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              17                41
  CLUS_2              15                30
  CLUS_3              30                31
  CLUS_4              16                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P LOSS MUTATED       13      8     17     32      6      2
  2P LOSS WILD-TYPE     11     27     32     36     16     20
D44V4, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              13                11
  CLUS_2               8                27
  CLUS_3              17                32
  CLUS_4              32                36
  CLUS_5               6                16
  CLUS_6               2                20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED       40     41     10
  2P LOSS WILD-TYPE     74     36     54
D44V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              40                74
  CLUS_2              41                36
  CLUS_3              10                54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P LOSS MUTATED       22      6     28      6      7     12     10
  2P LOSS WILD-TYPE     25     15     21     40     23     17     23
D44V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              22                25
  CLUS_2               6                15
  CLUS_3              28                21
  CLUS_4               6                40
  CLUS_5               7                23
  CLUS_6              12                17
  CLUS_7              10                23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED       25     20     47
  2P LOSS WILD-TYPE     80     30     53
D44V7, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              25                80
  CLUS_2              20                30
  CLUS_3              47                53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED       27      7     57      1
  2P LOSS WILD-TYPE     55     30     57     21
D44V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              27                55
  CLUS_2               7                30
  CLUS_3              57                57
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED       12     14     28      7     13
  2P LOSS WILD-TYPE     46     13     19     16     26
D44V9, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              12                46
  CLUS_2              14                13
  CLUS_3              28                19
  CLUS_4               7                16
  CLUS_5              13                26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED       19     29     10     15      1
  2P LOSS WILD-TYPE     39     20     11     27     23
D44V10, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              19                39
  CLUS_2              29                20
  CLUS_3              10                11
  CLUS_4              15                27
  CLUS_5               1                23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = 2Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED       36      1      7     31
  2Q LOSS WILD-TYPE     59     59     32     32
D45V1, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              36                59
  CLUS_2               1                59
  CLUS_3               7                32
  CLUS_4              31                32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        9      9     26     31
  2Q LOSS WILD-TYPE     45     47     46     44
D45V2, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               9                45
  CLUS_2               9                47
  CLUS_3              26                46
  CLUS_4              31                44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED       12     19     21     13
  2Q LOSS WILD-TYPE     46     26     40     43
D45V3, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              12                46
  CLUS_2              19                26
  CLUS_3              21                40
  CLUS_4              13                43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2Q LOSS MUTATED        9      7     18     22      4      5
  2Q LOSS WILD-TYPE     15     28     31     46     18     17
D45V4, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               9                15
  CLUS_2               7                28
  CLUS_3              18                31
  CLUS_4              22                46
  CLUS_5               4                18
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       33     27     13
  2Q LOSS WILD-TYPE     81     50     51
D45V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              33                81
  CLUS_2              27                50
  CLUS_3              13                51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q LOSS MUTATED       16      4     14      7      7     12     13
  2Q LOSS WILD-TYPE     31     17     35     39     23     17     20
D45V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              16                31
  CLUS_2               4                17
  CLUS_3              14                35
  CLUS_4               7                39
  CLUS_5               7                23
  CLUS_6              12                17
  CLUS_7              13                20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       29     14     32
  2Q LOSS WILD-TYPE     76     36     68
D45V7, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              29                76
  CLUS_2              14                36
  CLUS_3              32                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED       28      4     40      3
  2Q LOSS WILD-TYPE     54     33     74     19
D45V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              28                54
  CLUS_2               4                33
  CLUS_3              40                74
  CLUS_4               3                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED       13      9     17      8     14
  2Q LOSS WILD-TYPE     45     18     30     15     25
D45V9, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              13                45
  CLUS_2               9                18
  CLUS_3              17                30
  CLUS_4               8                15
  CLUS_5              14                25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED       20     19      7     12      3
  2Q LOSS WILD-TYPE     38     30     14     30     21
D45V10, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              20                38
  CLUS_2              19                30
  CLUS_3               7                14
  CLUS_4              12                30
  CLUS_5               3                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED       28      9      5     14
  3P LOSS WILD-TYPE     67     51     34     49
D46V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              28                67
  CLUS_2               9                51
  CLUS_3               5                34
  CLUS_4              14                49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED       10     17      5     24
  3P LOSS WILD-TYPE     44     39     67     51
D46V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              10                44
  CLUS_2              17                39
  CLUS_3               5                67
  CLUS_4              24                51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED       17     16      6     11
  3P LOSS WILD-TYPE     41     29     55     45
D46V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              17                41
  CLUS_2              16                29
  CLUS_3               6                55
  CLUS_4              11                45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3P LOSS MUTATED        9      9     12      5      8      7
  3P LOSS WILD-TYPE     15     26     37     63     14     15
D46V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               9                15
  CLUS_2               9                26
  CLUS_3              12                37
  CLUS_4               5                63
  CLUS_5               8                14
  CLUS_6               7                15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       31      5     20
  3P LOSS WILD-TYPE     83     72     44
D46V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              31                83
  CLUS_2               5                72
  CLUS_3              20                44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P LOSS MUTATED       19      3      3     15      8      2      6
  3P LOSS WILD-TYPE     28     18     46     31     22     27     27
D46V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              19                28
  CLUS_2               3                18
  CLUS_3               3                46
  CLUS_4              15                31
  CLUS_5               8                22
  CLUS_6               2                27
  CLUS_7               6                27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       31     16      8
  3P LOSS WILD-TYPE     74     34     92
D46V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              31                74
  CLUS_2              16                34
  CLUS_3               8                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED       25      7     15      8
  3P LOSS WILD-TYPE     57     30     99     14
D46V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              25                57
  CLUS_2               7                30
  CLUS_3              15                99
  CLUS_4               8                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED       14     16      2      4      9
  3P LOSS WILD-TYPE     44     11     45     19     30
D46V9, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              14                44
  CLUS_2              16                11
  CLUS_3               2                45
  CLUS_4               4                19
  CLUS_5               9                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED       17      2      4     14      8
  3P LOSS WILD-TYPE     41     47     17     28     16
D46V10, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              17                41
  CLUS_2               2                47
  CLUS_3               4                17
  CLUS_4              14                28
  CLUS_5               8                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED       28      6      6     11
  3Q LOSS WILD-TYPE     67     54     33     52
D47V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              28                67
  CLUS_2               6                54
  CLUS_3               6                33
  CLUS_4              11                52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        7     13      7     24
  3Q LOSS WILD-TYPE     47     43     65     51
D47V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7                47
  CLUS_2              13                43
  CLUS_3               7                65
  CLUS_4              24                51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED       13     17      7      8
  3Q LOSS WILD-TYPE     45     28     54     48
D47V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              13                45
  CLUS_2              17                28
  CLUS_3               7                54
  CLUS_4               8                48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q LOSS MUTATED        6      9     12      6      6      6
  3Q LOSS WILD-TYPE     18     26     37     62     16     16
D47V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               6                18
  CLUS_2               9                26
  CLUS_3              12                37
  CLUS_4               6                62
  CLUS_5               6                16
  CLUS_6               6                16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       24      7     20
  3Q LOSS WILD-TYPE     90     70     44
D47V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              24                90
  CLUS_2               7                70
  CLUS_3              20                44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q LOSS MUTATED       15      2      5     12      8      2      7
  3Q LOSS WILD-TYPE     32     19     44     34     22     27     26
D47V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              15                32
  CLUS_2               2                19
  CLUS_3               5                44
  CLUS_4              12                34
  CLUS_5               8                22
  CLUS_6               2                27
  CLUS_7               7                26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       27     13     10
  3Q LOSS WILD-TYPE     78     37     90
D47V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              27                78
  CLUS_2              13                37
  CLUS_3              10                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED       23      7     14      6
  3Q LOSS WILD-TYPE     59     30    100     16
D47V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              23                59
  CLUS_2               7                30
  CLUS_3              14               100
  CLUS_4               6                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED       12     12      4      3      8
  3Q LOSS WILD-TYPE     46     15     43     20     31
D47V9, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              12                46
  CLUS_2              12                15
  CLUS_3               4                43
  CLUS_4               3                20
  CLUS_5               8                31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED       16      4      1     12      6
  3Q LOSS WILD-TYPE     42     45     20     30     18
D47V10, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              16                42
  CLUS_2               4                45
  CLUS_3               1                20
  CLUS_4              12                30
  CLUS_5               6                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = 4P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       18      4      4     15
  4P LOSS WILD-TYPE     77     56     35     48
D48V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              18                77
  CLUS_2               4                56
  CLUS_3               4                35
  CLUS_4              15                48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        7      7     14     13
  4P LOSS WILD-TYPE     47     49     58     62
D48V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               7                47
  CLUS_2               7                49
  CLUS_3              14                58
  CLUS_4              13                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        8     10     12      9
  4P LOSS WILD-TYPE     50     35     49     47
D48V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               8                50
  CLUS_2              10                35
  CLUS_3              12                49
  CLUS_4               9                47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P LOSS MUTATED        3      5      9     12      5      5
  4P LOSS WILD-TYPE     21     30     40     56     17     17
D48V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               5                30
  CLUS_3               9                40
  CLUS_4              12                56
  CLUS_5               5                17
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       18     14      9
  4P LOSS WILD-TYPE     96     63     55
D48V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              18                96
  CLUS_2              14                63
  CLUS_3               9                55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P LOSS MUTATED        9      3      9      5      5      5      5
  4P LOSS WILD-TYPE     38     18     40     41     25     24     28
D48V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               9                38
  CLUS_2               3                18
  CLUS_3               9                40
  CLUS_4               5                41
  CLUS_5               5                25
  CLUS_6               5                24
  CLUS_7               5                28
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       14      8     19
  4P LOSS WILD-TYPE     91     42     81
D48V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              14                91
  CLUS_2               8                42
  CLUS_3              19                81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       14      4     20      3
  4P LOSS WILD-TYPE     68     33     94     19
D48V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              14                68
  CLUS_2               4                33
  CLUS_3              20                94
  CLUS_4               3                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        7      4      9      4      5
  4P LOSS WILD-TYPE     51     23     38     19     34
D48V9, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               7                51
  CLUS_2               4                23
  CLUS_3               9                38
  CLUS_4               4                19
  CLUS_5               5                34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        5      8      2      8      6
  4P LOSS WILD-TYPE     53     41     19     34     18
D48V10, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5                53
  CLUS_2               8                41
  CLUS_3               2                19
  CLUS_4               8                34
  CLUS_5               6                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = 4Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       23      4      7     16
  4Q LOSS WILD-TYPE     72     56     32     47
D49V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              23                72
  CLUS_2               4                56
  CLUS_3               7                32
  CLUS_4              16                47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        7     11     14     18
  4Q LOSS WILD-TYPE     47     45     58     57
D49V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               7                47
  CLUS_2              11                45
  CLUS_3              14                58
  CLUS_4              18                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       11     11     13     13
  4Q LOSS WILD-TYPE     47     34     48     43
D49V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              11                47
  CLUS_2              11                34
  CLUS_3              13                48
  CLUS_4              13                43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4Q LOSS MUTATED        4      6     15     12      6      5
  4Q LOSS WILD-TYPE     20     29     34     56     16     17
D49V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               4                20
  CLUS_2               6                29
  CLUS_3              15                34
  CLUS_4              12                56
  CLUS_5               6                16
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       24     14     12
  4Q LOSS WILD-TYPE     90     63     52
D49V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              24                90
  CLUS_2              14                63
  CLUS_3              12                52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q LOSS MUTATED       10      2     10      9      9      4      6
  4Q LOSS WILD-TYPE     37     19     39     37     21     25     27
D49V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              10                37
  CLUS_2               2                19
  CLUS_3              10                39
  CLUS_4               9                37
  CLUS_5               9                21
  CLUS_6               4                25
  CLUS_7               6                27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       18     12     19
  4Q LOSS WILD-TYPE     87     38     81
D49V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              18                87
  CLUS_2              12                38
  CLUS_3              19                81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       18      6     22      3
  4Q LOSS WILD-TYPE     64     31     92     19
D49V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              18                64
  CLUS_2               6                31
  CLUS_3              22                92
  CLUS_4               3                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED       10      7      9      7      6
  4Q LOSS WILD-TYPE     48     20     38     16     33
D49V9, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              10                48
  CLUS_2               7                20
  CLUS_3               9                38
  CLUS_4               7                16
  CLUS_5               6                33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED       11      9      4      9      6
  4Q LOSS WILD-TYPE     47     40     17     33     18
D49V10, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              11                47
  CLUS_2               9                40
  CLUS_3               4                17
  CLUS_4               9                33
  CLUS_5               6                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED       12      3      3      5
  5P LOSS WILD-TYPE     83     57     36     58
D50V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              12                83
  CLUS_2               3                57
  CLUS_3               3                36
  CLUS_4               5                58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        3      4      2     14
  5P LOSS WILD-TYPE     51     52     70     61
D50V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                51
  CLUS_2               4                52
  CLUS_3               2                70
  CLUS_4              14                61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        8      5      1      8
  5P LOSS WILD-TYPE     50     40     60     48
D50V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               8                50
  CLUS_2               5                40
  CLUS_3               1                60
  CLUS_4               8                48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P LOSS MUTATED        3      3      9      2      4      1
  5P LOSS WILD-TYPE     21     32     40     66     18     21
D50V4, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               3                32
  CLUS_3               9                40
  CLUS_4               2                66
  CLUS_5               4                18
  CLUS_6               1                21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       14      2      7
  5P LOSS WILD-TYPE    100     75     57
D50V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              14               100
  CLUS_2               2                75
  CLUS_3               7                57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P LOSS MUTATED        5      2      0      2      5      2      7
  5P LOSS WILD-TYPE     42     19     49     44     25     27     26
D50V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               5                42
  CLUS_2               2                19
  CLUS_3               0                49
  CLUS_4               2                44
  CLUS_5               5                25
  CLUS_6               2                27
  CLUS_7               7                26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       10      7      5
  5P LOSS WILD-TYPE     95     43     95
D50V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              10                95
  CLUS_2               7                43
  CLUS_3               5                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED       10      3      8      1
  5P LOSS WILD-TYPE     72     34    106     21
D50V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              10                72
  CLUS_2               3                34
  CLUS_3               8               106
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        5      4      0      3      7
  5P LOSS WILD-TYPE     53     23     47     20     32
D50V9, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               5                53
  CLUS_2               4                23
  CLUS_3               0                47
  CLUS_4               3                20
  CLUS_5               7                32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        7      1      5      4      2
  5P LOSS WILD-TYPE     51     48     16     38     22
D50V10, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               7                51
  CLUS_2               1                48
  CLUS_3               5                16
  CLUS_4               4                38
  CLUS_5               2                22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED       17      1      3     13
  5Q LOSS WILD-TYPE     78     59     36     50
D51V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              17                78
  CLUS_2               1                59
  CLUS_3               3                36
  CLUS_4              13                50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        4      4      5     21
  5Q LOSS WILD-TYPE     50     52     67     54
D51V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                50
  CLUS_2               4                52
  CLUS_3               5                67
  CLUS_4              21                54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        9     11      3      9
  5Q LOSS WILD-TYPE     49     34     58     47
D51V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               9                49
  CLUS_2              11                34
  CLUS_3               3                58
  CLUS_4               9                47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q LOSS MUTATED        5      3     13      3      6      2
  5Q LOSS WILD-TYPE     19     32     36     65     16     20
D51V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2               3                32
  CLUS_3              13                36
  CLUS_4               3                65
  CLUS_5               6                16
  CLUS_6               2                20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       20      5      9
  5Q LOSS WILD-TYPE     94     72     55
D51V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              20                94
  CLUS_2               5                72
  CLUS_3               9                55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q LOSS MUTATED        8      3      2      3      6      3      9
  5Q LOSS WILD-TYPE     39     18     47     43     24     26     24
D51V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               8                39
  CLUS_2               3                18
  CLUS_3               2                47
  CLUS_4               3                43
  CLUS_5               6                24
  CLUS_6               3                26
  CLUS_7               9                24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       15      7     11
  5Q LOSS WILD-TYPE     90     43     89
D51V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              15                90
  CLUS_2               7                43
  CLUS_3              11                89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED       17      2     13      1
  5Q LOSS WILD-TYPE     65     35    101     21
D51V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              17                65
  CLUS_2               2                35
  CLUS_3              13               101
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        8      5      1      4      7
  5Q LOSS WILD-TYPE     50     22     46     19     32
D51V9, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               8                50
  CLUS_2               5                22
  CLUS_3               1                46
  CLUS_4               4                19
  CLUS_5               7                32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED       10      3      5      6      1
  5Q LOSS WILD-TYPE     48     46     16     36     23
D51V10, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              10                48
  CLUS_2               3                46
  CLUS_3               5                16
  CLUS_4               6                36
  CLUS_5               1                23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       24      4     18     14
  6P LOSS WILD-TYPE     71     56     21     49
D52V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              24                71
  CLUS_2               4                56
  CLUS_3              18                21
  CLUS_4              14                49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        7     10     24     19
  6P LOSS WILD-TYPE     47     46     48     56
D52V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               7                47
  CLUS_2              10                46
  CLUS_3              24                48
  CLUS_4              19                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       10      9     21     12
  6P LOSS WILD-TYPE     48     36     40     44
D52V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              10                48
  CLUS_2               9                36
  CLUS_3              21                40
  CLUS_4              12                44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P LOSS MUTATED        4      6     12     20      6      4
  6P LOSS WILD-TYPE     20     29     37     48     16     18
D52V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               4                20
  CLUS_2               6                29
  CLUS_3              12                37
  CLUS_4              20                48
  CLUS_5               6                16
  CLUS_6               4                18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       22     24     12
  6P LOSS WILD-TYPE     92     53     52
D52V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              22                92
  CLUS_2              24                53
  CLUS_3              12                52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P LOSS MUTATED        9      1     17      7      7      8      9
  6P LOSS WILD-TYPE     38     20     32     39     23     21     24
D52V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               9                38
  CLUS_2               1                20
  CLUS_3              17                32
  CLUS_4               7                39
  CLUS_5               7                23
  CLUS_6               8                21
  CLUS_7               9                24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       20     10     29
  6P LOSS WILD-TYPE     85     40     71
D52V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              20                85
  CLUS_2              10                40
  CLUS_3              29                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       19      7     30      3
  6P LOSS WILD-TYPE     63     30     84     19
D52V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              19                63
  CLUS_2               7                30
  CLUS_3              30                84
  CLUS_4               3                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED       13      6     17      3      9
  6P LOSS WILD-TYPE     45     21     30     20     30
D52V9, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              13                45
  CLUS_2               6                21
  CLUS_3              17                30
  CLUS_4               3                20
  CLUS_5               9                30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED       13     17      2     12      4
  6P LOSS WILD-TYPE     45     32     19     30     20
D52V10, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              13                45
  CLUS_2              17                32
  CLUS_3               2                19
  CLUS_4              12                30
  CLUS_5               4                20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       24      2     15     11
  6Q LOSS WILD-TYPE     71     58     24     52
D53V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              24                71
  CLUS_2               2                58
  CLUS_3              15                24
  CLUS_4              11                52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        5     11     18     18
  6Q LOSS WILD-TYPE     49     45     54     57
D53V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               5                49
  CLUS_2              11                45
  CLUS_3              18                54
  CLUS_4              18                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        6     12     14     12
  6Q LOSS WILD-TYPE     52     33     47     44
D53V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               6                52
  CLUS_2              12                33
  CLUS_3              14                47
  CLUS_4              12                44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q LOSS MUTATED        3      4     16     13      2      6
  6Q LOSS WILD-TYPE     21     31     33     55     20     16
D53V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               4                31
  CLUS_3              16                33
  CLUS_4              13                55
  CLUS_5               2                20
  CLUS_6               6                16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       20     18     13
  6Q LOSS WILD-TYPE     94     59     51
D53V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              20                94
  CLUS_2              18                59
  CLUS_3              13                51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q LOSS MUTATED        7      0     13      8      8      5     10
  6Q LOSS WILD-TYPE     40     21     36     38     22     24     23
D53V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               7                40
  CLUS_2               0                21
  CLUS_3              13                36
  CLUS_4               8                38
  CLUS_5               8                22
  CLUS_6               5                24
  CLUS_7              10                23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       20      8     24
  6Q LOSS WILD-TYPE     85     42     76
D53V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              20                85
  CLUS_2               8                42
  CLUS_3              24                76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       19      5     25      3
  6Q LOSS WILD-TYPE     63     32     89     19
D53V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              19                63
  CLUS_2               5                32
  CLUS_3              25                89
  CLUS_4               3                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED       14      1     13      5     11
  6Q LOSS WILD-TYPE     44     26     34     18     28
D53V9, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              14                44
  CLUS_2               1                26
  CLUS_3              13                34
  CLUS_4               5                18
  CLUS_5              11                28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED       12     13      5      9      5
  6Q LOSS WILD-TYPE     46     36     16     33     19
D53V10, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              12                46
  CLUS_2              13                36
  CLUS_3               5                16
  CLUS_4               9                33
  CLUS_5               5                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = 7P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED       17      1      4     10
  7P LOSS WILD-TYPE     78     59     35     53
D54V1, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              17                78
  CLUS_2               1                59
  CLUS_3               4                35
  CLUS_4              10                53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        2      3     15     12
  7P LOSS WILD-TYPE     52     53     57     63
D54V2, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                52
  CLUS_2               3                53
  CLUS_3              15                57
  CLUS_4              12                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        5      6     15      3
  7P LOSS WILD-TYPE     53     39     46     53
D54V3, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               5                53
  CLUS_2               6                39
  CLUS_3              15                46
  CLUS_4               3                53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7P LOSS MUTATED        1      3      9     14      1      1
  7P LOSS WILD-TYPE     23     32     40     54     21     21
D54V4, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1                23
  CLUS_2               3                32
  CLUS_3               9                40
  CLUS_4              14                54
  CLUS_5               1                21
  CLUS_6               1                21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED       14     15      2
  7P LOSS WILD-TYPE    100     62     62
D54V5, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              14               100
  CLUS_2              15                62
  CLUS_3               2                62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P LOSS MUTATED        6      2     13      2      4      1      3
  7P LOSS WILD-TYPE     41     19     36     44     26     28     30
D54V6, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               6                41
  CLUS_2               2                19
  CLUS_3              13                36
  CLUS_4               2                44
  CLUS_5               4                26
  CLUS_6               1                28
  CLUS_7               3                30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        9      7     16
  7P LOSS WILD-TYPE     96     43     84
D54V7, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               9                96
  CLUS_2               7                43
  CLUS_3              16                84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        9      3     19      1
  7P LOSS WILD-TYPE     73     34     95     21
D54V8, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               9                73
  CLUS_2               3                34
  CLUS_3              19                95
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P LOSS MUTATED        6      2     10      2      3
  7P LOSS WILD-TYPE     52     25     37     21     36
D54V9, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               6                52
  CLUS_2               2                25
  CLUS_3              10                37
  CLUS_4               2                21
  CLUS_5               3                36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P LOSS MUTATED        7      9      1      5      1
  7P LOSS WILD-TYPE     51     40     20     37     23
D54V10, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               7                51
  CLUS_2               9                40
  CLUS_3               1                20
  CLUS_4               5                37
  CLUS_5               1                23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = 7Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED       17      2      5     12
  7Q LOSS WILD-TYPE     78     58     34     51
D55V1, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              17                78
  CLUS_2               2                58
  CLUS_3               5                34
  CLUS_4              12                51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        4      7     13     12
  7Q LOSS WILD-TYPE     50     49     59     63
D55V2, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               4                50
  CLUS_2               7                49
  CLUS_3              13                59
  CLUS_4              12                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        8      6      9      6
  7Q LOSS WILD-TYPE     50     39     52     50
D55V3, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               8                50
  CLUS_2               6                39
  CLUS_3               9                52
  CLUS_4               6                50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q LOSS MUTATED        4      3      8     10      1      3
  7Q LOSS WILD-TYPE     20     32     41     58     21     19
D55V4, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               4                20
  CLUS_2               3                32
  CLUS_3               8                41
  CLUS_4              10                58
  CLUS_5               1                21
  CLUS_6               3                19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       16     15      5
  7Q LOSS WILD-TYPE     98     62     59
D55V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              16                98
  CLUS_2              15                62
  CLUS_3               5                59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q LOSS MUTATED        7      3     13      4      5      1      3
  7Q LOSS WILD-TYPE     40     18     36     42     25     28     30
D55V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               7                40
  CLUS_2               3                18
  CLUS_3              13                36
  CLUS_4               4                42
  CLUS_5               5                25
  CLUS_6               1                28
  CLUS_7               3                30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       12      8     16
  7Q LOSS WILD-TYPE     93     42     84
D55V7, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              12                93
  CLUS_2               8                42
  CLUS_3              16                84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED       12      3     20      1
  7Q LOSS WILD-TYPE     70     34     94     21
D55V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              12                70
  CLUS_2               3                34
  CLUS_3              20                94
  CLUS_4               1                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        6      5      9      2      5
  7Q LOSS WILD-TYPE     52     22     38     21     34
D55V9, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               6                52
  CLUS_2               5                22
  CLUS_3               9                38
  CLUS_4               2                21
  CLUS_5               5                34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        6      8      3      7      3
  7Q LOSS WILD-TYPE     52     41     18     35     21
D55V10, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               6                52
  CLUS_2               8                41
  CLUS_3               3                18
  CLUS_4               7                35
  CLUS_5               3                21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED       30      4      6     22
  8P LOSS WILD-TYPE     65     56     33     41
D56V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              30                65
  CLUS_2               4                56
  CLUS_3               6                33
  CLUS_4              22                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        9     14     12     27
  8P LOSS WILD-TYPE     45     42     60     48
D56V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               9                45
  CLUS_2              14                42
  CLUS_3              12                60
  CLUS_4              27                48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED       15     16     10     16
  8P LOSS WILD-TYPE     43     29     51     40
D56V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              15                43
  CLUS_2              16                29
  CLUS_3              10                51
  CLUS_4              16                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P LOSS MUTATED       11      3     20     12      6      5
  8P LOSS WILD-TYPE     13     32     29     56     16     17
D56V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              11                13
  CLUS_2               3                32
  CLUS_3              20                29
  CLUS_4              12                56
  CLUS_5               6                16
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       34     13     14
  8P LOSS WILD-TYPE     80     64     50
D56V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              34                80
  CLUS_2              13                64
  CLUS_3              14                50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P LOSS MUTATED       17      3      6      7     10      8     10
  8P LOSS WILD-TYPE     30     18     43     39     20     21     23
D56V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              17                30
  CLUS_2               3                18
  CLUS_3               6                43
  CLUS_4               7                39
  CLUS_5              10                20
  CLUS_6               8                21
  CLUS_7              10                23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       28     13     19
  8P LOSS WILD-TYPE     77     37     81
D56V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              28                77
  CLUS_2              13                37
  CLUS_3              19                81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED       27      9     21      3
  8P LOSS WILD-TYPE     55     28     93     19
D56V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              27                55
  CLUS_2               9                28
  CLUS_3              21                93
  CLUS_4               3                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED       17      8      8      7      7
  8P LOSS WILD-TYPE     41     19     39     16     32
D56V9, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              17                41
  CLUS_2               8                19
  CLUS_3               8                39
  CLUS_4               7                16
  CLUS_5               7                32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED       20      7      3     12      5
  8P LOSS WILD-TYPE     38     42     18     30     19
D56V10, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              20                38
  CLUS_2               7                42
  CLUS_3               3                18
  CLUS_4              12                30
  CLUS_5               5                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED       22      3      2     18
  8Q LOSS WILD-TYPE     73     57     37     45
D57V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              22                73
  CLUS_2               3                57
  CLUS_3               2                37
  CLUS_4              18                45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        8      7     10     20
  8Q LOSS WILD-TYPE     46     49     62     55
D57V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               8                46
  CLUS_2               7                49
  CLUS_3              10                62
  CLUS_4              20                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED       12     10      7     10
  8Q LOSS WILD-TYPE     46     35     54     46
D57V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              12                46
  CLUS_2              10                35
  CLUS_3               7                54
  CLUS_4              10                46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q LOSS MUTATED       11      4     13      7      4      0
  8Q LOSS WILD-TYPE     13     31     36     61     18     22
D57V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              11                13
  CLUS_2               4                31
  CLUS_3              13                36
  CLUS_4               7                61
  CLUS_5               4                18
  CLUS_6               0                22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       28     10      7
  8Q LOSS WILD-TYPE     86     67     57
D57V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              28                86
  CLUS_2              10                67
  CLUS_3               7                57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q LOSS MUTATED       17      3      6      4      5      4      6
  8Q LOSS WILD-TYPE     30     18     43     42     25     25     27
D57V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              17                30
  CLUS_2               3                18
  CLUS_3               6                43
  CLUS_4               4                42
  CLUS_5               5                25
  CLUS_6               4                25
  CLUS_7               6                27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       21     11     13
  8Q LOSS WILD-TYPE     84     39     87
D57V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              21                84
  CLUS_2              11                39
  CLUS_3              13                87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED       23      5     17      0
  8Q LOSS WILD-TYPE     59     32     97     22
D57V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              23                59
  CLUS_2               5                32
  CLUS_3              17                97
  CLUS_4               0                22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED       11     10      9      4      5
  8Q LOSS WILD-TYPE     47     17     38     19     34
D57V9, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              11                47
  CLUS_2              10                17
  CLUS_3               9                38
  CLUS_4               4                19
  CLUS_5               5                34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED       17      9      3      9      1
  8Q LOSS WILD-TYPE     41     40     18     33     23
D57V10, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              17                41
  CLUS_2               9                40
  CLUS_3               3                18
  CLUS_4               9                33
  CLUS_5               1                23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       49      8     16      9
  9P LOSS WILD-TYPE     46     52     23     54
D58V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              49                46
  CLUS_2               8                52
  CLUS_3              16                23
  CLUS_4               9                54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       14     18     20     30
  9P LOSS WILD-TYPE     40     38     52     45
D58V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              14                40
  CLUS_2              18                38
  CLUS_3              20                52
  CLUS_4              30                45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       14     19     19     22
  9P LOSS WILD-TYPE     44     26     42     34
D58V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              14                44
  CLUS_2              19                26
  CLUS_3              19                42
  CLUS_4              22                34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P LOSS MUTATED        5     13     21     20      7      8
  9P LOSS WILD-TYPE     19     22     28     48     15     14
D58V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2              13                22
  CLUS_3              21                28
  CLUS_4              20                48
  CLUS_5               7                15
  CLUS_6               8                14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       38     20     23
  9P LOSS WILD-TYPE     76     57     41
D58V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              38                76
  CLUS_2              20                57
  CLUS_3              23                41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P LOSS MUTATED       16      4     17     19     10      3     12
  9P LOSS WILD-TYPE     31     17     32     27     20     26     21
D58V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              16                31
  CLUS_2               4                17
  CLUS_3              17                32
  CLUS_4              19                27
  CLUS_5              10                20
  CLUS_6               3                26
  CLUS_7              12                21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       30     21     30
  9P LOSS WILD-TYPE     75     29     70
D58V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              30                75
  CLUS_2              21                29
  CLUS_3              30                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       25      9     40      7
  9P LOSS WILD-TYPE     57     28     74     15
D58V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              25                57
  CLUS_2               9                28
  CLUS_3              40                74
  CLUS_4               7                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED       18     12     13      7     16
  9P LOSS WILD-TYPE     40     15     34     16     23
D58V9, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              18                40
  CLUS_2              12                15
  CLUS_3              13                34
  CLUS_4               7                16
  CLUS_5              16                23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED       19     12     11     14     10
  9P LOSS WILD-TYPE     39     37     10     28     14
D58V10, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              19                39
  CLUS_2              12                37
  CLUS_3              11                10
  CLUS_4              14                28
  CLUS_5              10                14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       31      2      9      8
  9Q LOSS WILD-TYPE     64     58     30     55
D59V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              31                64
  CLUS_2               2                58
  CLUS_3               9                30
  CLUS_4               8                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        7     14     12     17
  9Q LOSS WILD-TYPE     47     42     60     58
D59V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               7                47
  CLUS_2              14                42
  CLUS_3              12                60
  CLUS_4              17                58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       10     12     11     13
  9Q LOSS WILD-TYPE     48     33     50     43
D59V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              10                48
  CLUS_2              12                33
  CLUS_3              11                50
  CLUS_4              13                43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q LOSS MUTATED        5      7     13     11      5      5
  9Q LOSS WILD-TYPE     19     28     36     57     17     17
D59V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2               7                28
  CLUS_3              13                36
  CLUS_4              11                57
  CLUS_5               5                17
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       20     12     17
  9Q LOSS WILD-TYPE     94     65     47
D59V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              20                94
  CLUS_2              12                65
  CLUS_3              17                47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q LOSS MUTATED       10      1      7     14      5      4      8
  9Q LOSS WILD-TYPE     37     20     42     32     25     25     25
D59V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              10                37
  CLUS_2               1                20
  CLUS_3               7                42
  CLUS_4              14                32
  CLUS_5               5                25
  CLUS_6               4                25
  CLUS_7               8                25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       18     12     19
  9Q LOSS WILD-TYPE     87     38     81
D59V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              18                87
  CLUS_2              12                38
  CLUS_3              19                81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       15      6     23      5
  9Q LOSS WILD-TYPE     67     31     91     17
D59V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              15                67
  CLUS_2               6                31
  CLUS_3              23                91
  CLUS_4               5                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED       12      7      7      9      6
  9Q LOSS WILD-TYPE     46     20     40     14     33
D59V9, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              12                46
  CLUS_2               7                20
  CLUS_3               7                40
  CLUS_4               9                14
  CLUS_5               6                33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED       11      8      5      8      9
  9Q LOSS WILD-TYPE     47     41     16     34     15
D59V10, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              11                47
  CLUS_2               8                41
  CLUS_3               5                16
  CLUS_4               8                34
  CLUS_5               9                15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       48      6     31     36
  10P LOSS WILD-TYPE     47     54      8     27
D60V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               48                 47
  CLUS_2                6                 54
  CLUS_3               31                  8
  CLUS_4               36                 27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       18     21     42     40
  10P LOSS WILD-TYPE     36     35     30     35
D60V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               18                 36
  CLUS_2               21                 35
  CLUS_3               42                 30
  CLUS_4               40                 35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       19     20     35     29
  10P LOSS WILD-TYPE     39     25     26     27
D60V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               19                 39
  CLUS_2               20                 25
  CLUS_3               35                 26
  CLUS_4               29                 27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P LOSS MUTATED       11      9     28     33      9     13
  10P LOSS WILD-TYPE     13     26     21     35     13      9
D60V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               11                 13
  CLUS_2                9                 26
  CLUS_3               28                 21
  CLUS_4               33                 35
  CLUS_5                9                 13
  CLUS_6               13                  9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       50     44     26
  10P LOSS WILD-TYPE     64     33     38
D60V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               50                 64
  CLUS_2               44                 33
  CLUS_3               26                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P LOSS MUTATED       23      6     34     18     12     11     16
  10P LOSS WILD-TYPE     24     15     15     28     18     18     17
D60V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               23                 24
  CLUS_2                6                 15
  CLUS_3               34                 15
  CLUS_4               18                 28
  CLUS_5               12                 18
  CLUS_6               11                 18
  CLUS_7               16                 17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       42     26     53
  10P LOSS WILD-TYPE     63     24     47
D60V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               42                 63
  CLUS_2               26                 24
  CLUS_3               53                 47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       36     14     64      7
  10P LOSS WILD-TYPE     46     23     50     15
D60V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               36                 46
  CLUS_2               14                 23
  CLUS_3               64                 50
  CLUS_4                7                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED       22     14     29     12     22
  10P LOSS WILD-TYPE     36     13     18     11     17
D60V9, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               22                 36
  CLUS_2               14                 13
  CLUS_3               29                 18
  CLUS_4               12                 11
  CLUS_5               22                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED       26     29     11     23     10
  10P LOSS WILD-TYPE     32     20     10     19     14
D60V10, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               26                 32
  CLUS_2               29                 20
  CLUS_3               11                 10
  CLUS_4               23                 19
  CLUS_5               10                 14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       47      2     33     49
  10Q LOSS WILD-TYPE     48     58      6     14
D61V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               47                 48
  CLUS_2                2                 58
  CLUS_3               33                  6
  CLUS_4               49                 14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       14     12     56     49
  10Q LOSS WILD-TYPE     40     44     16     26
D61V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               14                 40
  CLUS_2               12                 44
  CLUS_3               56                 16
  CLUS_4               49                 26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       17     20     45     28
  10Q LOSS WILD-TYPE     41     25     16     28
D61V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               17                 41
  CLUS_2               20                 25
  CLUS_3               45                 16
  CLUS_4               28                 28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10Q LOSS MUTATED       13      7     32     44      7      7
  10Q LOSS WILD-TYPE     11     28     17     24     15     15
D61V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               13                 11
  CLUS_2                7                 28
  CLUS_3               32                 17
  CLUS_4               44                 24
  CLUS_5                7                 15
  CLUS_6                7                 15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       53     59     18
  10Q LOSS WILD-TYPE     61     18     46
D61V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               53                 61
  CLUS_2               59                 18
  CLUS_3               18                 46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q LOSS MUTATED       24      6     43      9     13     16     19
  10Q LOSS WILD-TYPE     23     15      6     37     17     13     14
D61V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               24                 23
  CLUS_2                6                 15
  CLUS_3               43                  6
  CLUS_4                9                 37
  CLUS_5               13                 17
  CLUS_6               16                 13
  CLUS_7               19                 14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       36     27     67
  10Q LOSS WILD-TYPE     69     23     33
D61V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               36                 69
  CLUS_2               27                 23
  CLUS_3               67                 33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       35     14     78      3
  10Q LOSS WILD-TYPE     47     23     36     19
D61V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               35                 47
  CLUS_2               14                 23
  CLUS_3               78                 36
  CLUS_4                3                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED       19     12     36     13     21
  10Q LOSS WILD-TYPE     39     15     11     10     18
D61V9, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               19                 39
  CLUS_2               12                 15
  CLUS_3               36                 11
  CLUS_4               13                 10
  CLUS_5               21                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED       23     38     11     24      5
  10Q LOSS WILD-TYPE     35     11     10     18     19
D61V10, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               23                 35
  CLUS_2               38                 11
  CLUS_3               11                 10
  CLUS_4               24                 18
  CLUS_5                5                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       47      6     11     32
  11P LOSS WILD-TYPE     48     54     28     31
D62V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               47                 48
  CLUS_2                6                 54
  CLUS_3               11                 28
  CLUS_4               32                 31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       14     20     28     34
  11P LOSS WILD-TYPE     40     36     44     41
D62V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               14                 40
  CLUS_2               20                 36
  CLUS_3               28                 44
  CLUS_4               34                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       24     18     22     20
  11P LOSS WILD-TYPE     34     27     39     36
D62V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               24                 34
  CLUS_2               18                 27
  CLUS_3               22                 39
  CLUS_4               20                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P LOSS MUTATED       16     12     14     23     11      8
  11P LOSS WILD-TYPE      8     23     35     45     11     14
D62V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               16                  8
  CLUS_2               12                 23
  CLUS_3               14                 35
  CLUS_4               23                 45
  CLUS_5               11                 11
  CLUS_6                8                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       44     29     23
  11P LOSS WILD-TYPE     70     48     41
D62V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               44                 70
  CLUS_2               29                 48
  CLUS_3               23                 41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P LOSS MUTATED       23     10     20     18      6      9     10
  11P LOSS WILD-TYPE     24     11     29     28     24     20     23
D62V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               23                 24
  CLUS_2               10                 11
  CLUS_3               20                 29
  CLUS_4               18                 28
  CLUS_5                6                 24
  CLUS_6                9                 20
  CLUS_7               10                 23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       38     21     35
  11P LOSS WILD-TYPE     67     29     65
D62V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               38                 67
  CLUS_2               21                 29
  CLUS_3               35                 65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       34     12     42      6
  11P LOSS WILD-TYPE     48     25     72     16
D62V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               34                 48
  CLUS_2               12                 25
  CLUS_3               42                 72
  CLUS_4                6                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED       21     17     21      8     13
  11P LOSS WILD-TYPE     37     10     26     15     26
D62V9, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               21                 37
  CLUS_2               17                 10
  CLUS_3               21                 26
  CLUS_4                8                 15
  CLUS_5               13                 26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED       24     19      9     19      9
  11P LOSS WILD-TYPE     34     30     12     23     15
D62V10, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               24                 34
  CLUS_2               19                 30
  CLUS_3                9                 12
  CLUS_4               19                 23
  CLUS_5                9                 15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       44      7      8     34
  11Q LOSS WILD-TYPE     51     53     31     29
D63V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               44                 51
  CLUS_2                7                 53
  CLUS_3                8                 31
  CLUS_4               34                 29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       17     19     23     34
  11Q LOSS WILD-TYPE     37     37     49     41
D63V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               17                 37
  CLUS_2               19                 37
  CLUS_3               23                 49
  CLUS_4               34                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       23     17     16     24
  11Q LOSS WILD-TYPE     35     28     45     32
D63V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               23                 35
  CLUS_2               17                 28
  CLUS_3               16                 45
  CLUS_4               24                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q LOSS MUTATED       15     12     15     16     12     10
  11Q LOSS WILD-TYPE      9     23     34     52     10     12
D63V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               15                  9
  CLUS_2               12                 23
  CLUS_3               15                 34
  CLUS_4               16                 52
  CLUS_5               12                 10
  CLUS_6               10                 12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       45     24     23
  11Q LOSS WILD-TYPE     69     53     41
D63V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               45                 69
  CLUS_2               24                 53
  CLUS_3               23                 41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q LOSS MUTATED       23     11     17     19      5      6     11
  11Q LOSS WILD-TYPE     24     10     32     27     25     23     22
D63V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               23                 24
  CLUS_2               11                 10
  CLUS_3               17                 32
  CLUS_4               19                 27
  CLUS_5                5                 25
  CLUS_6                6                 23
  CLUS_7               11                 22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       38     22     31
  11Q LOSS WILD-TYPE     67     28     69
D63V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               38                 67
  CLUS_2               22                 28
  CLUS_3               31                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       32     13     40      6
  11Q LOSS WILD-TYPE     50     24     74     16
D63V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               32                 50
  CLUS_2               13                 24
  CLUS_3               40                 74
  CLUS_4                6                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED       22     16     15     10     14
  11Q LOSS WILD-TYPE     36     11     32     13     25
D63V9, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               22                 36
  CLUS_2               16                 11
  CLUS_3               15                 32
  CLUS_4               10                 13
  CLUS_5               14                 25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED       25     15     12     17      8
  11Q LOSS WILD-TYPE     33     34      9     25     16
D63V10, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               25                 33
  CLUS_2               15                 34
  CLUS_3               12                  9
  CLUS_4               17                 25
  CLUS_5                8                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = 12P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED       32      2      6     27
  12P LOSS WILD-TYPE     63     58     33     36
D64V1, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               32                 63
  CLUS_2                2                 58
  CLUS_3                6                 33
  CLUS_4               27                 36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        6     10     22     29
  12P LOSS WILD-TYPE     48     46     50     46
D64V2, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                6                 48
  CLUS_2               10                 46
  CLUS_3               22                 50
  CLUS_4               29                 46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED       16     14     19     13
  12P LOSS WILD-TYPE     42     31     42     43
D64V3, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               16                 42
  CLUS_2               14                 31
  CLUS_3               19                 42
  CLUS_4               13                 43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12P LOSS MUTATED       11     10     13     18      6      4
  12P LOSS WILD-TYPE     13     25     36     50     16     18
D64V4, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               11                 13
  CLUS_2               10                 25
  CLUS_3               13                 36
  CLUS_4               18                 50
  CLUS_5                6                 16
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       36     21      9
  12P LOSS WILD-TYPE     78     56     55
D64V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               36                 78
  CLUS_2               21                 56
  CLUS_3                9                 55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P LOSS MUTATED       23      4     15      5      6      6      7
  12P LOSS WILD-TYPE     24     17     34     41     24     23     26
D64V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               23                 24
  CLUS_2                4                 17
  CLUS_3               15                 34
  CLUS_4                5                 41
  CLUS_5                6                 24
  CLUS_6                6                 23
  CLUS_7                7                 26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       26     15     26
  12P LOSS WILD-TYPE     79     35     74
D64V7, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               26                 79
  CLUS_2               15                 35
  CLUS_3               26                 74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED       24     10     29      4
  12P LOSS WILD-TYPE     58     27     85     18
D64V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               24                 58
  CLUS_2               10                 27
  CLUS_3               29                 85
  CLUS_4                4                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P LOSS MUTATED       11     14     11      7     10
  12P LOSS WILD-TYPE     47     13     36     16     29
D64V9, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               11                 47
  CLUS_2               14                 13
  CLUS_3               11                 36
  CLUS_4                7                 16
  CLUS_5               10                 29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P LOSS MUTATED       16     13      5     15      4
  12P LOSS WILD-TYPE     42     36     16     27     20
D64V10, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               16                 42
  CLUS_2               13                 36
  CLUS_3                5                 16
  CLUS_4               15                 27
  CLUS_5                4                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = 12Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED       28      2      7     22
  12Q LOSS WILD-TYPE     67     58     32     41
D65V1, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               28                 67
  CLUS_2                2                 58
  CLUS_3                7                 32
  CLUS_4               22                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        6      8     21     24
  12Q LOSS WILD-TYPE     48     48     51     51
D65V2, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                6                 48
  CLUS_2                8                 48
  CLUS_3               21                 51
  CLUS_4               24                 51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED       14      9     17     13
  12Q LOSS WILD-TYPE     44     36     44     43
D65V3, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               14                 44
  CLUS_2                9                 36
  CLUS_3               17                 44
  CLUS_4               13                 43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q LOSS MUTATED       10      8     12     15      4      4
  12Q LOSS WILD-TYPE     14     27     37     53     18     18
D65V4, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               10                 14
  CLUS_2                8                 27
  CLUS_3               12                 37
  CLUS_4               15                 53
  CLUS_5                4                 18
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       29     21      9
  12Q LOSS WILD-TYPE     85     56     55
D65V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               29                 85
  CLUS_2               21                 56
  CLUS_3                9                 55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q LOSS MUTATED       18      4     16      4      6      5      6
  12Q LOSS WILD-TYPE     29     17     33     42     24     24     27
D65V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               18                 29
  CLUS_2                4                 17
  CLUS_3               16                 33
  CLUS_4                4                 42
  CLUS_5                6                 24
  CLUS_6                5                 24
  CLUS_7                6                 27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       21     13     25
  12Q LOSS WILD-TYPE     84     37     75
D65V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               21                 84
  CLUS_2               13                 37
  CLUS_3               25                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED       20      6     29      4
  12Q LOSS WILD-TYPE     62     31     85     18
D65V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               20                 62
  CLUS_2                6                 31
  CLUS_3               29                 85
  CLUS_4                4                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED       10     12     13      4      8
  12Q LOSS WILD-TYPE     48     15     34     19     31
D65V9, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               10                 48
  CLUS_2               12                 15
  CLUS_3               13                 34
  CLUS_4                4                 19
  CLUS_5                8                 31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED       13     16      3     11      4
  12Q LOSS WILD-TYPE     45     33     18     31     20
D65V10, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               13                 45
  CLUS_2               16                 33
  CLUS_3                3                 18
  CLUS_4               11                 31
  CLUS_5                4                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       67      6     28     31
  13Q LOSS WILD-TYPE     28     54     11     32
D66V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               67                 28
  CLUS_2                6                 54
  CLUS_3               28                 11
  CLUS_4               31                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       20     19     39     54
  13Q LOSS WILD-TYPE     34     37     33     21
D66V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               20                 34
  CLUS_2               19                 37
  CLUS_3               39                 33
  CLUS_4               54                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       22     26     33     35
  13Q LOSS WILD-TYPE     36     19     28     21
D66V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               22                 36
  CLUS_2               26                 19
  CLUS_3               33                 28
  CLUS_4               35                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q LOSS MUTATED       10     17     35     33     13      8
  13Q LOSS WILD-TYPE     14     18     14     35      9     14
D66V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               10                 14
  CLUS_2               17                 18
  CLUS_3               35                 14
  CLUS_4               33                 35
  CLUS_5               13                  9
  CLUS_6                8                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       63     41     26
  13Q LOSS WILD-TYPE     51     36     38
D66V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               63                 51
  CLUS_2               41                 36
  CLUS_3               26                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q LOSS MUTATED       26      7     30     14     23     11     19
  13Q LOSS WILD-TYPE     21     14     19     32      7     18     14
D66V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               26                 21
  CLUS_2                7                 14
  CLUS_3               30                 19
  CLUS_4               14                 32
  CLUS_5               23                  7
  CLUS_6               11                 18
  CLUS_7               19                 14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       49     29     53
  13Q LOSS WILD-TYPE     56     21     47
D66V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               49                 56
  CLUS_2               29                 21
  CLUS_3               53                 47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       45     16     63      7
  13Q LOSS WILD-TYPE     37     21     51     15
D66V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               45                 37
  CLUS_2               16                 21
  CLUS_3               63                 51
  CLUS_4                7                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED       26     13     26     10     28
  13Q LOSS WILD-TYPE     32     14     21     13     11
D66V9, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               26                 32
  CLUS_2               13                 14
  CLUS_3               26                 21
  CLUS_4               10                 13
  CLUS_5               28                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED       30     26     12     26      9
  13Q LOSS WILD-TYPE     28     23      9     16     15
D66V10, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               30                 28
  CLUS_2               26                 23
  CLUS_3               12                  9
  CLUS_4               26                 16
  CLUS_5                9                 15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = 14Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED       28      6     10     18
  14Q LOSS WILD-TYPE     67     54     29     45
D67V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               28                 67
  CLUS_2                6                 54
  CLUS_3               10                 29
  CLUS_4               18                 45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED       12     11     18     21
  14Q LOSS WILD-TYPE     42     45     54     54
D67V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               12                 42
  CLUS_2               11                 45
  CLUS_3               18                 54
  CLUS_4               21                 54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED       15     10     17     14
  14Q LOSS WILD-TYPE     43     35     44     42
D67V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               15                 43
  CLUS_2               10                 35
  CLUS_3               17                 44
  CLUS_4               14                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q LOSS MUTATED        8      9      9     17      7      6
  14Q LOSS WILD-TYPE     16     26     40     51     15     16
D67V4, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                9                 26
  CLUS_3                9                 40
  CLUS_4               17                 51
  CLUS_5                7                 15
  CLUS_6                6                 16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       28     22     12
  14Q LOSS WILD-TYPE     86     55     52
D67V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               28                 86
  CLUS_2               22                 55
  CLUS_3               12                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q LOSS MUTATED       17      4      6      8      2     15     10
  14Q LOSS WILD-TYPE     30     17     43     38     28     14     23
D67V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               17                 30
  CLUS_2                4                 17
  CLUS_3                6                 43
  CLUS_4                8                 38
  CLUS_5                2                 28
  CLUS_6               15                 14
  CLUS_7               10                 23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       20     16     26
  14Q LOSS WILD-TYPE     85     34     74
D67V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               20                 85
  CLUS_2               16                 34
  CLUS_3               26                 74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED       18      8     35      1
  14Q LOSS WILD-TYPE     64     29     79     21
D67V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               18                 64
  CLUS_2                8                 29
  CLUS_3               35                 79
  CLUS_4                1                 21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        8     14      9      8      7
  14Q LOSS WILD-TYPE     50     13     38     15     32
D67V9, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                8                 50
  CLUS_2               14                 13
  CLUS_3                9                 38
  CLUS_4                8                 15
  CLUS_5                7                 32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED       15     11     10      9      1
  14Q LOSS WILD-TYPE     43     38     11     33     23
D67V10, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               15                 43
  CLUS_2               11                 38
  CLUS_3               10                 11
  CLUS_4                9                 33
  CLUS_5                1                 23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = 15Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       26      6      3     11
  15Q LOSS WILD-TYPE     69     54     36     52
D68V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               26                 69
  CLUS_2                6                 54
  CLUS_3                3                 36
  CLUS_4               11                 52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        8     10      7     21
  15Q LOSS WILD-TYPE     46     46     65     54
D68V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                8                 46
  CLUS_2               10                 46
  CLUS_3                7                 65
  CLUS_4               21                 54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        8     11      8     14
  15Q LOSS WILD-TYPE     50     34     53     42
D68V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                8                 50
  CLUS_2               11                 34
  CLUS_3                8                 53
  CLUS_4               14                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q LOSS MUTATED        6      5     14      6      4      6
  15Q LOSS WILD-TYPE     18     30     35     62     18     16
D68V4, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                6                 18
  CLUS_2                5                 30
  CLUS_3               14                 35
  CLUS_4                6                 62
  CLUS_5                4                 18
  CLUS_6                6                 16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       26      8     12
  15Q LOSS WILD-TYPE     88     69     52
D68V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               26                 88
  CLUS_2                8                 69
  CLUS_3               12                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q LOSS MUTATED       11      4      2      9      6      6      8
  15Q LOSS WILD-TYPE     36     17     47     37     24     23     25
D68V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               11                 36
  CLUS_2                4                 17
  CLUS_3                2                 47
  CLUS_4                9                 37
  CLUS_5                6                 24
  CLUS_6                6                 23
  CLUS_7                8                 25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       21     13     12
  15Q LOSS WILD-TYPE     84     37     88
D68V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               21                 84
  CLUS_2               13                 37
  CLUS_3               12                 88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       24      7     15      0
  15Q LOSS WILD-TYPE     58     30     99     22
D68V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               24                 58
  CLUS_2                7                 30
  CLUS_3               15                 99
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED       11      8      3      4     12
  15Q LOSS WILD-TYPE     47     19     44     19     27
D68V9, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               11                 47
  CLUS_2                8                 19
  CLUS_3                3                 44
  CLUS_4                4                 19
  CLUS_5               12                 27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED       16      4      3     13      2
  15Q LOSS WILD-TYPE     42     45     18     29     22
D68V10, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               16                 42
  CLUS_2                4                 45
  CLUS_3                3                 18
  CLUS_4               13                 29
  CLUS_5                2                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       36      4     12     23
  16P LOSS WILD-TYPE     59     56     27     40
D69V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               36                 59
  CLUS_2                4                 56
  CLUS_3               12                 27
  CLUS_4               23                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       11     11     19     34
  16P LOSS WILD-TYPE     43     45     53     41
D69V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               11                 43
  CLUS_2               11                 45
  CLUS_3               19                 53
  CLUS_4               34                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       15     18     15     19
  16P LOSS WILD-TYPE     43     27     46     37
D69V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               15                 43
  CLUS_2               18                 27
  CLUS_3               15                 46
  CLUS_4               19                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P LOSS MUTATED        9      6     23     16      6      7
  16P LOSS WILD-TYPE     15     29     26     52     16     15
D69V4, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                9                 15
  CLUS_2                6                 29
  CLUS_3               23                 26
  CLUS_4               16                 52
  CLUS_5                6                 16
  CLUS_6                7                 15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       35     21     19
  16P LOSS WILD-TYPE     79     56     45
D69V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               35                 79
  CLUS_2               21                 56
  CLUS_3               19                 45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P LOSS MUTATED       15      4     12      8     13      8     15
  16P LOSS WILD-TYPE     32     17     37     38     17     21     18
D69V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               15                 32
  CLUS_2                4                 17
  CLUS_3               12                 37
  CLUS_4                8                 38
  CLUS_5               13                 17
  CLUS_6                8                 21
  CLUS_7               15                 18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       29     19     26
  16P LOSS WILD-TYPE     76     31     74
D69V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               29                 76
  CLUS_2               19                 31
  CLUS_3               26                 74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       27      7     36      4
  16P LOSS WILD-TYPE     55     30     78     18
D69V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               27                 55
  CLUS_2                7                 30
  CLUS_3               36                 78
  CLUS_4                4                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED       15      7     15     11     13
  16P LOSS WILD-TYPE     43     20     32     12     26
D69V9, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               15                 43
  CLUS_2                7                 20
  CLUS_3               15                 32
  CLUS_4               11                 12
  CLUS_5               13                 26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED       17     16      8     16      4
  16P LOSS WILD-TYPE     41     33     13     26     20
D69V10, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               17                 41
  CLUS_2               16                 33
  CLUS_3                8                 13
  CLUS_4               16                 26
  CLUS_5                4                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       50      5     28     41
  16Q LOSS WILD-TYPE     45     55     11     22
D70V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               50                 45
  CLUS_2                5                 55
  CLUS_3               28                 11
  CLUS_4               41                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       16     16     49     43
  16Q LOSS WILD-TYPE     38     40     23     32
D70V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               16                 38
  CLUS_2               16                 40
  CLUS_3               49                 23
  CLUS_4               43                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       19     24     39     24
  16Q LOSS WILD-TYPE     39     21     22     32
D70V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               19                 39
  CLUS_2               24                 21
  CLUS_3               39                 22
  CLUS_4               24                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q LOSS MUTATED       11     10     29     39      9      8
  16Q LOSS WILD-TYPE     13     25     20     29     13     14
D70V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               11                 13
  CLUS_2               10                 25
  CLUS_3               29                 20
  CLUS_4               39                 29
  CLUS_5                9                 13
  CLUS_6                8                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       51     50     22
  16Q LOSS WILD-TYPE     63     27     42
D70V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               51                 63
  CLUS_2               50                 27
  CLUS_3               22                 42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q LOSS MUTATED       25      5     34     11     15     16     17
  16Q LOSS WILD-TYPE     22     16     15     35     15     13     16
D70V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               25                 22
  CLUS_2                5                 16
  CLUS_3               34                 15
  CLUS_4               11                 35
  CLUS_5               15                 15
  CLUS_6               16                 13
  CLUS_7               17                 16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       40     25     58
  16Q LOSS WILD-TYPE     65     25     42
D70V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               40                 65
  CLUS_2               25                 25
  CLUS_3               58                 42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       39      9     69      6
  16Q LOSS WILD-TYPE     43     28     45     16
D70V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               39                 43
  CLUS_2                9                 28
  CLUS_3               69                 45
  CLUS_4                6                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED       21     11     36     13     18
  16Q LOSS WILD-TYPE     37     16     11     10     21
D70V9, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               21                 37
  CLUS_2               11                 16
  CLUS_3               36                 11
  CLUS_4               13                 10
  CLUS_5               18                 21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED       23     38      9     23      6
  16Q LOSS WILD-TYPE     35     11     12     19     18
D70V10, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               23                 35
  CLUS_2               38                 11
  CLUS_3                9                 12
  CLUS_4               23                 19
  CLUS_5                6                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       23      7     13     14
  17P LOSS WILD-TYPE     72     53     26     49
D71V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               23                 72
  CLUS_2                7                 53
  CLUS_3               13                 26
  CLUS_4               14                 49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       11     10     18     18
  17P LOSS WILD-TYPE     43     46     54     57
D71V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               11                 43
  CLUS_2               10                 46
  CLUS_3               18                 54
  CLUS_4               18                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       11     12     13     12
  17P LOSS WILD-TYPE     47     33     48     44
D71V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               11                 47
  CLUS_2               12                 33
  CLUS_3               13                 48
  CLUS_4               12                 44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P LOSS MUTATED        5      3     17     13      4      6
  17P LOSS WILD-TYPE     19     32     32     55     18     16
D71V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                3                 32
  CLUS_3               17                 32
  CLUS_4               13                 55
  CLUS_5                4                 18
  CLUS_6                6                 16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       24     18     15
  17P LOSS WILD-TYPE     90     59     49
D71V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               24                 90
  CLUS_2               18                 59
  CLUS_3               15                 49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P LOSS MUTATED        6      5     14      9      8      4     11
  17P LOSS WILD-TYPE     41     16     35     37     22     25     22
D71V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                6                 41
  CLUS_2                5                 16
  CLUS_3               14                 35
  CLUS_4                9                 37
  CLUS_5                8                 22
  CLUS_6                4                 25
  CLUS_7               11                 22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       18     13     25
  17P LOSS WILD-TYPE     87     37     75
D71V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               18                 87
  CLUS_2               13                 37
  CLUS_3               25                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       15      5     31      5
  17P LOSS WILD-TYPE     67     32     83     17
D71V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               15                 67
  CLUS_2                5                 32
  CLUS_3               31                 83
  CLUS_4                5                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED       12      5     12      7      9
  17P LOSS WILD-TYPE     46     22     35     16     30
D71V9, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               12                 46
  CLUS_2                5                 22
  CLUS_3               12                 35
  CLUS_4                7                 16
  CLUS_5                9                 30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED        9     12      8     10      6
  17P LOSS WILD-TYPE     49     37     13     32     18
D71V10, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                9                 49
  CLUS_2               12                 37
  CLUS_3                8                 13
  CLUS_4               10                 32
  CLUS_5                6                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = 17Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       23      3      7     16
  17Q LOSS WILD-TYPE     72     57     32     47
D72V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               23                 72
  CLUS_2                3                 57
  CLUS_3                7                 32
  CLUS_4               16                 47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        7      9     15     18
  17Q LOSS WILD-TYPE     47     47     57     57
D72V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                7                 47
  CLUS_2                9                 47
  CLUS_3               15                 57
  CLUS_4               18                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       11     14     13      7
  17Q LOSS WILD-TYPE     47     31     48     49
D72V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               11                 47
  CLUS_2               14                 31
  CLUS_3               13                 48
  CLUS_4                7                 49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q LOSS MUTATED        4      3     15     14      3      6
  17Q LOSS WILD-TYPE     20     32     34     54     19     16
D72V4, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                3                 32
  CLUS_3               15                 34
  CLUS_4               14                 54
  CLUS_5                3                 19
  CLUS_6                6                 16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       21     15     13
  17Q LOSS WILD-TYPE     93     62     51
D72V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               21                 93
  CLUS_2               15                 62
  CLUS_3               13                 51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q LOSS MUTATED        8      3     13      8      7      2      8
  17Q LOSS WILD-TYPE     39     18     36     38     23     27     25
D72V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                8                 39
  CLUS_2                3                 18
  CLUS_3               13                 36
  CLUS_4                8                 38
  CLUS_5                7                 23
  CLUS_6                2                 27
  CLUS_7                8                 25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       17     10     21
  17Q LOSS WILD-TYPE     88     40     79
D72V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               17                 88
  CLUS_2               10                 40
  CLUS_3               21                 79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       14      4     26      4
  17Q LOSS WILD-TYPE     68     33     88     18
D72V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               14                 68
  CLUS_2                4                 33
  CLUS_3               26                 88
  CLUS_4                4                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED       11      4      9      6      7
  17Q LOSS WILD-TYPE     47     23     38     17     32
D72V9, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               11                 47
  CLUS_2                4                 23
  CLUS_3                9                 38
  CLUS_4                6                 17
  CLUS_5                7                 32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED        9      9      7      6      6
  17Q LOSS WILD-TYPE     49     40     14     36     18
D72V10, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                9                 49
  CLUS_2                9                 40
  CLUS_3                7                 14
  CLUS_4                6                 36
  CLUS_5                6                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       31      6      9     15
  18P LOSS WILD-TYPE     64     54     30     48
D73V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               31                 64
  CLUS_2                6                 54
  CLUS_3                9                 30
  CLUS_4               15                 48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        8      8     17     28
  18P LOSS WILD-TYPE     46     48     55     47
D73V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                8                 46
  CLUS_2                8                 48
  CLUS_3               17                 55
  CLUS_4               28                 47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        8     14     16     17
  18P LOSS WILD-TYPE     50     31     45     39
D73V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                8                 50
  CLUS_2               14                 31
  CLUS_3               16                 45
  CLUS_4               17                 39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P LOSS MUTATED        3      6     20     14      5      7
  18P LOSS WILD-TYPE     21     29     29     54     17     15
D73V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                6                 29
  CLUS_3               20                 29
  CLUS_4               14                 54
  CLUS_5                5                 17
  CLUS_6                7                 15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       30     17     14
  18P LOSS WILD-TYPE     84     60     50
D73V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               30                 84
  CLUS_2               17                 60
  CLUS_3               14                 50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P LOSS MUTATED       11      3     11      8     10      6     12
  18P LOSS WILD-TYPE     36     18     38     38     20     23     21
D73V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               11                 36
  CLUS_2                3                 18
  CLUS_3               11                 38
  CLUS_4                8                 38
  CLUS_5               10                 20
  CLUS_6                6                 23
  CLUS_7               12                 21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       24     13     23
  18P LOSS WILD-TYPE     81     37     77
D73V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               24                 81
  CLUS_2               13                 37
  CLUS_3               23                 77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       23      4     30      3
  18P LOSS WILD-TYPE     59     33     84     19
D73V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               23                 59
  CLUS_2                4                 33
  CLUS_3               30                 84
  CLUS_4                3                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED       14      5      9      9     13
  18P LOSS WILD-TYPE     44     22     38     14     26
D73V9, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               14                 44
  CLUS_2                5                 22
  CLUS_3                9                 38
  CLUS_4                9                 14
  CLUS_5               13                 26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED       15     11      8     11      5
  18P LOSS WILD-TYPE     43     38     13     31     19
D73V10, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               15                 43
  CLUS_2               11                 38
  CLUS_3                8                 13
  CLUS_4               11                 31
  CLUS_5                5                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       34      6     11     18
  18Q LOSS WILD-TYPE     61     54     28     45
D74V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               34                 61
  CLUS_2                6                 54
  CLUS_3               11                 28
  CLUS_4               18                 45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       11     10     13     35
  18Q LOSS WILD-TYPE     43     46     59     40
D74V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               11                 43
  CLUS_2               10                 46
  CLUS_3               13                 59
  CLUS_4               35                 40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        9     17     12     23
  18Q LOSS WILD-TYPE     49     28     49     33
D74V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                9                 49
  CLUS_2               17                 28
  CLUS_3               12                 49
  CLUS_4               23                 33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q LOSS MUTATED        4     11     25      9      4      8
  18Q LOSS WILD-TYPE     20     24     24     59     18     14
D74V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                4                 20
  CLUS_2               11                 24
  CLUS_3               25                 24
  CLUS_4                9                 59
  CLUS_5                4                 18
  CLUS_6                8                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       39     14     16
  18Q LOSS WILD-TYPE     75     63     48
D74V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               39                 75
  CLUS_2               14                 63
  CLUS_3               16                 48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q LOSS MUTATED       12      5     10     10     15      4     13
  18Q LOSS WILD-TYPE     35     16     39     36     15     25     20
D74V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               12                 35
  CLUS_2                5                 16
  CLUS_3               10                 39
  CLUS_4               10                 36
  CLUS_5               15                 15
  CLUS_6                4                 25
  CLUS_7               13                 20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       29     20     20
  18Q LOSS WILD-TYPE     76     30     80
D74V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               29                 76
  CLUS_2               20                 30
  CLUS_3               20                 80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       28      6     31      4
  18Q LOSS WILD-TYPE     54     31     83     18
D74V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               28                 54
  CLUS_2                6                 31
  CLUS_3               31                 83
  CLUS_4                4                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED       18      5      8      8     19
  18Q LOSS WILD-TYPE     40     22     39     15     20
D74V9, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               18                 40
  CLUS_2                5                 22
  CLUS_3                8                 39
  CLUS_4                8                 15
  CLUS_5               19                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED       18      9     10     16      5
  18Q LOSS WILD-TYPE     40     40     11     26     19
D74V10, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               18                 40
  CLUS_2                9                 40
  CLUS_3               10                 11
  CLUS_4               16                 26
  CLUS_5                5                 19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = 19P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        9      1      3     11
  19P LOSS WILD-TYPE     86     59     36     52
D75V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                9                 86
  CLUS_2                1                 59
  CLUS_3                3                 36
  CLUS_4               11                 52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        1      3      5     15
  19P LOSS WILD-TYPE     53     53     67     60
D75V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                3                 53
  CLUS_3                5                 67
  CLUS_4               15                 60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        5      7      6      5
  19P LOSS WILD-TYPE     53     38     55     51
D75V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                5                 53
  CLUS_2                7                 38
  CLUS_3                6                 55
  CLUS_4                5                 51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P LOSS MUTATED        1      2     11      5      0      4
  19P LOSS WILD-TYPE     23     33     38     63     22     18
D75V4, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                2                 33
  CLUS_3               11                 38
  CLUS_4                5                 63
  CLUS_5                0                 22
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       12      5      7
  19P LOSS WILD-TYPE    102     72     57
D75V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               12                102
  CLUS_2                5                 72
  CLUS_3                7                 57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P LOSS MUTATED        1      1      2      4      6      3      7
  19P LOSS WILD-TYPE     46     20     47     42     24     26     26
D75V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                1                 20
  CLUS_3                2                 47
  CLUS_4                4                 42
  CLUS_5                6                 24
  CLUS_6                3                 26
  CLUS_7                7                 26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       11      5      7
  19P LOSS WILD-TYPE     94     45     93
D75V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               11                 94
  CLUS_2                5                 45
  CLUS_3                7                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        9      3      9      2
  19P LOSS WILD-TYPE     73     34    105     20
D75V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                9                 73
  CLUS_2                3                 34
  CLUS_3                9                105
  CLUS_4                2                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        5      1      2      5      7
  19P LOSS WILD-TYPE     53     26     45     18     32
D75V9, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                5                 53
  CLUS_2                1                 26
  CLUS_3                2                 45
  CLUS_4                5                 18
  CLUS_5                7                 32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        5      3      4      6      2
  19P LOSS WILD-TYPE     53     46     17     36     22
D75V10, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                5                 53
  CLUS_2                3                 46
  CLUS_3                4                 17
  CLUS_4                6                 36
  CLUS_5                2                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED       20      1      8     12
  19Q LOSS WILD-TYPE     75     59     31     51
D76V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               20                 75
  CLUS_2                1                 59
  CLUS_3                8                 31
  CLUS_4               12                 51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        1      7     13     20
  19Q LOSS WILD-TYPE     53     49     59     55
D76V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                7                 49
  CLUS_3               13                 59
  CLUS_4               20                 55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        7     10     11      8
  19Q LOSS WILD-TYPE     51     35     50     48
D76V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                7                 51
  CLUS_2               10                 35
  CLUS_3               11                 50
  CLUS_4                8                 48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q LOSS MUTATED        3      4     14     11      0      4
  19Q LOSS WILD-TYPE     21     31     35     57     22     18
D76V4, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                4                 31
  CLUS_3               14                 35
  CLUS_4               11                 57
  CLUS_5                0                 22
  CLUS_6                4                 18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       18     14      9
  19Q LOSS WILD-TYPE     96     63     55
D76V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               18                 96
  CLUS_2               14                 63
  CLUS_3                9                 55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q LOSS MUTATED        3      2      8      7      7      6      8
  19Q LOSS WILD-TYPE     44     19     41     39     23     23     25
D76V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                2                 19
  CLUS_3                8                 41
  CLUS_4                7                 39
  CLUS_5                7                 23
  CLUS_6                6                 23
  CLUS_7                8                 25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       16      7     17
  19Q LOSS WILD-TYPE     89     43     83
D76V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               16                 89
  CLUS_2                7                 43
  CLUS_3               17                 83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED       14      3     20      3
  19Q LOSS WILD-TYPE     68     34     94     19
D76V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               14                 68
  CLUS_2                3                 34
  CLUS_3               20                 94
  CLUS_4                3                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        9      2      7      6      9
  19Q LOSS WILD-TYPE     49     25     40     17     30
D76V9, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                9                 49
  CLUS_2                2                 25
  CLUS_3                7                 40
  CLUS_4                6                 17
  CLUS_5                9                 30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        9      8      5      7      4
  19Q LOSS WILD-TYPE     49     41     16     35     20
D76V10, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                9                 49
  CLUS_2                8                 41
  CLUS_3                5                 16
  CLUS_4                7                 35
  CLUS_5                4                 20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = 20P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED       21      5      8     21
  20P LOSS WILD-TYPE     74     55     31     42
D77V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               21                 74
  CLUS_2                5                 55
  CLUS_3                8                 31
  CLUS_4               21                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED       11      4     17     23
  20P LOSS WILD-TYPE     43     52     55     52
D77V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               11                 43
  CLUS_2                4                 52
  CLUS_3               17                 55
  CLUS_4               23                 52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED       12      9     12     13
  20P LOSS WILD-TYPE     46     36     49     43
D77V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               12                 46
  CLUS_2                9                 36
  CLUS_3               12                 49
  CLUS_4               13                 43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P LOSS MUTATED        8      7     15     12      2      2
  20P LOSS WILD-TYPE     16     28     34     56     20     20
D77V4, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                7                 28
  CLUS_3               15                 34
  CLUS_4               12                 56
  CLUS_5                2                 20
  CLUS_6                2                 20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       31     16      7
  20P LOSS WILD-TYPE     83     61     57
D77V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               31                 83
  CLUS_2               16                 61
  CLUS_3                7                 57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P LOSS MUTATED       10      6     13      4     10      3      8
  20P LOSS WILD-TYPE     37     15     36     42     20     26     25
D77V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               10                 37
  CLUS_2                6                 15
  CLUS_3               13                 36
  CLUS_4                4                 42
  CLUS_5               10                 20
  CLUS_6                3                 26
  CLUS_7                8                 25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       19     14     21
  20P LOSS WILD-TYPE     86     36     79
D77V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               19                 86
  CLUS_2               14                 36
  CLUS_3               21                 79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED       24      4     26      0
  20P LOSS WILD-TYPE     58     33     88     22
D77V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               24                 58
  CLUS_2                4                 33
  CLUS_3               26                 88
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED       11      6     11      4     12
  20P LOSS WILD-TYPE     47     21     36     19     27
D77V9, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               11                 47
  CLUS_2                6                 21
  CLUS_3               11                 36
  CLUS_4                4                 19
  CLUS_5               12                 27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED       13     11      5     15      0
  20P LOSS WILD-TYPE     45     38     16     27     24
D77V10, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               13                 45
  CLUS_2               11                 38
  CLUS_3                5                 16
  CLUS_4               15                 27
  CLUS_5                0                 24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = 20Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        5      5      3     12
  20Q LOSS WILD-TYPE     90     55     36     51
D78V1, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                5                 90
  CLUS_2                5                 55
  CLUS_3                3                 36
  CLUS_4               12                 51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        6      4      7      8
  20Q LOSS WILD-TYPE     48     52     65     67
D78V2, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                6                 48
  CLUS_2                4                 52
  CLUS_3                7                 65
  CLUS_4                8                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        8      2      5      6
  20Q LOSS WILD-TYPE     50     43     56     50
D78V3, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                8                 50
  CLUS_2                2                 43
  CLUS_3                5                 56
  CLUS_4                6                 50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20Q LOSS MUTATED        5      5      5      5      1      0
  20Q LOSS WILD-TYPE     19     30     44     63     21     22
D78V4, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                5                 30
  CLUS_3                5                 44
  CLUS_4                5                 63
  CLUS_5                1                 21
  CLUS_6                0                 22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED       15      7      3
  20Q LOSS WILD-TYPE     99     70     61
D78V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               15                 99
  CLUS_2                7                 70
  CLUS_3                3                 61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q LOSS MUTATED        7      2      5      2      3      2      4
  20Q LOSS WILD-TYPE     40     19     44     44     27     27     29
D78V6, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                7                 40
  CLUS_2                2                 19
  CLUS_3                5                 44
  CLUS_4                2                 44
  CLUS_5                3                 27
  CLUS_6                2                 27
  CLUS_7                4                 29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        7      9      9
  20Q LOSS WILD-TYPE     98     41     91
D78V7, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                7                 98
  CLUS_2                9                 41
  CLUS_3                9                 91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED       11      2     12      0
  20Q LOSS WILD-TYPE     71     35    102     22
D78V8, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               11                 71
  CLUS_2                2                 35
  CLUS_3               12                102
  CLUS_4                0                 22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q LOSS MUTATED        3      4      4      3      6
  20Q LOSS WILD-TYPE     55     23     43     20     33
D78V9, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                3                 55
  CLUS_2                4                 23
  CLUS_3                4                 43
  CLUS_4                3                 20
  CLUS_5                6                 33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q LOSS MUTATED        4      4      4      8      0
  20Q LOSS WILD-TYPE     54     45     17     34     24
D78V10, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                 54
  CLUS_2                4                 45
  CLUS_3                4                 17
  CLUS_4                8                 34
  CLUS_5                0                 24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       29      4      7     10
  21Q LOSS WILD-TYPE     66     56     32     53
D79V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               29                 66
  CLUS_2                4                 56
  CLUS_3                7                 32
  CLUS_4               10                 53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        9      6     11     24
  21Q LOSS WILD-TYPE     45     50     61     51
D79V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                9                 45
  CLUS_2                6                 50
  CLUS_3               11                 61
  CLUS_4               24                 51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       10     11     10     15
  21Q LOSS WILD-TYPE     48     34     51     41
D79V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               10                 48
  CLUS_2               11                 34
  CLUS_3               10                 51
  CLUS_4               15                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  21Q LOSS MUTATED        3      8     19      8      6      2
  21Q LOSS WILD-TYPE     21     27     30     60     16     20
D79V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                8                 27
  CLUS_3               19                 30
  CLUS_4                8                 60
  CLUS_5                6                 16
  CLUS_6                2                 20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       27     10     12
  21Q LOSS WILD-TYPE     87     67     52
D79V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               27                 87
  CLUS_2               10                 67
  CLUS_3               12                 52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q LOSS MUTATED       11      3      7      7      9      3      9
  21Q LOSS WILD-TYPE     36     18     42     39     21     26     24
D79V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               11                 36
  CLUS_2                3                 18
  CLUS_3                7                 42
  CLUS_4                7                 39
  CLUS_5                9                 21
  CLUS_6                3                 26
  CLUS_7                9                 24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       18     16     15
  21Q LOSS WILD-TYPE     87     34     85
D79V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               18                 87
  CLUS_2               16                 34
  CLUS_3               15                 85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       19      5     23      2
  21Q LOSS WILD-TYPE     63     32     91     20
D79V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               19                 63
  CLUS_2                5                 32
  CLUS_3               23                 91
  CLUS_4                2                 20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED       11      8      6      5     11
  21Q LOSS WILD-TYPE     47     19     41     18     28
D79V9, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               11                 47
  CLUS_2                8                 19
  CLUS_3                6                 41
  CLUS_4                5                 18
  CLUS_5               11                 28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED       15      8      7      9      2
  21Q LOSS WILD-TYPE     43     41     14     33     22
D79V10, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               15                 43
  CLUS_2                8                 41
  CLUS_3                7                 14
  CLUS_4                9                 33
  CLUS_5                2                 22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       24      6      7     30
  22Q LOSS WILD-TYPE     71     54     32     33
D80V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               24                 71
  CLUS_2                6                 54
  CLUS_3                7                 32
  CLUS_4               30                 33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        7     18     17     25
  22Q LOSS WILD-TYPE     47     38     55     50
D80V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                7                 47
  CLUS_2               18                 38
  CLUS_3               17                 55
  CLUS_4               25                 50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       21     11     15     13
  22Q LOSS WILD-TYPE     37     34     46     43
D80V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               21                 37
  CLUS_2               11                 34
  CLUS_3               15                 46
  CLUS_4               13                 43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q LOSS MUTATED       13      8     11     15      5      8
  22Q LOSS WILD-TYPE     11     27     38     53     17     14
D80V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               13                 11
  CLUS_2                8                 27
  CLUS_3               11                 38
  CLUS_4               15                 53
  CLUS_5                5                 17
  CLUS_6                8                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       25     20     21
  22Q LOSS WILD-TYPE     89     57     43
D80V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               25                 89
  CLUS_2               20                 57
  CLUS_3               21                 43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q LOSS MUTATED       18      1      9     14      4     12      8
  22Q LOSS WILD-TYPE     29     20     40     32     26     17     25
D80V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               18                 29
  CLUS_2                1                 20
  CLUS_3                9                 40
  CLUS_4               14                 32
  CLUS_5                4                 26
  CLUS_6               12                 17
  CLUS_7                8                 25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       32     10     25
  22Q LOSS WILD-TYPE     73     40     75
D80V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               32                 73
  CLUS_2               10                 40
  CLUS_3               25                 75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       26      7     28      6
  22Q LOSS WILD-TYPE     56     30     86     16
D80V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               26                 56
  CLUS_2                7                 30
  CLUS_3               28                 86
  CLUS_4                6                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED       17      9     15      8      6
  22Q LOSS WILD-TYPE     41     18     32     15     33
D80V9, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               17                 41
  CLUS_2                9                 18
  CLUS_3               15                 32
  CLUS_4                8                 15
  CLUS_5                6                 33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED       20     15      6      6      8
  22Q LOSS WILD-TYPE     38     34     15     36     16
D80V10, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               20                 38
  CLUS_2               15                 34
  CLUS_3                6                 15
  CLUS_4                6                 36
  CLUS_5                8                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = XP LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED       23      5     13     22
  XP LOSS WILD-TYPE     72     55     26     41
D81V1, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              23                72
  CLUS_2               5                55
  CLUS_3              13                26
  CLUS_4              22                41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED        6     11     28     18
  XP LOSS WILD-TYPE     48     45     44     57
D81V2, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               6                48
  CLUS_2              11                45
  CLUS_3              28                44
  CLUS_4              18                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED       10     10     24     10
  XP LOSS WILD-TYPE     48     35     37     46
D81V3, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              10                48
  CLUS_2              10                35
  CLUS_3              24                37
  CLUS_4              10                46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XP LOSS MUTATED        5      8     12     24      2      3
  XP LOSS WILD-TYPE     19     27     37     44     20     19
D81V4, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2               8                27
  CLUS_3              12                37
  CLUS_4              24                44
  CLUS_5               2                20
  CLUS_6               3                19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED       24     30      8
  XP LOSS WILD-TYPE     90     47     56
D81V5, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              24                90
  CLUS_2              30                47
  CLUS_3               8                56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP LOSS MUTATED       11      2     17      7      5     13      7
  XP LOSS WILD-TYPE     36     19     32     39     25     16     26
D81V6, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              11                36
  CLUS_2               2                19
  CLUS_3              17                32
  CLUS_4               7                39
  CLUS_5               5                25
  CLUS_6              13                16
  CLUS_7               7                26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED       19     11     32
  XP LOSS WILD-TYPE     86     39     68
D81V7, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              19                86
  CLUS_2              11                39
  CLUS_3              32                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED       16      5     36      5
  XP LOSS WILD-TYPE     66     32     78     17
D81V8, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              16                66
  CLUS_2               5                32
  CLUS_3              36                78
  CLUS_4               5                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP LOSS MUTATED       10      7     12      6      7
  XP LOSS WILD-TYPE     48     20     35     17     32
D81V9, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              10                48
  CLUS_2               7                20
  CLUS_3              12                35
  CLUS_4               6                17
  CLUS_5               7                32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP LOSS MUTATED       12     15      2      8      5
  XP LOSS WILD-TYPE     46     34     19     34     19
D81V10, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              12                46
  CLUS_2              15                34
  CLUS_3               2                19
  CLUS_4               8                34
  CLUS_5               5                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       39      7     21     35
  XQ LOSS WILD-TYPE     56     53     18     28
D82V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              39                56
  CLUS_2               7                53
  CLUS_3              21                18
  CLUS_4              35                28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       11     17     44     30
  XQ LOSS WILD-TYPE     43     39     28     45
D82V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              11                43
  CLUS_2              17                39
  CLUS_3              44                28
  CLUS_4              30                45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       15     19     36     16
  XQ LOSS WILD-TYPE     43     26     25     40
D82V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              15                43
  CLUS_2              19                26
  CLUS_3              36                25
  CLUS_4              16                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ LOSS MUTATED        7     10     19     37      8      5
  XQ LOSS WILD-TYPE     17     25     30     31     14     17
D82V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               7                17
  CLUS_2              10                25
  CLUS_3              19                30
  CLUS_4              37                31
  CLUS_5               8                14
  CLUS_6               5                17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       37     47     17
  XQ LOSS WILD-TYPE     77     30     47
D82V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              37                77
  CLUS_2              47                30
  CLUS_3              17                47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ LOSS MUTATED       21      4     30     13      5     16     12
  XQ LOSS WILD-TYPE     26     17     19     33     25     13     21
D82V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              21                26
  CLUS_2               4                17
  CLUS_3              30                19
  CLUS_4              13                33
  CLUS_5               5                25
  CLUS_6              16                13
  CLUS_7              12                21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       29     18     54
  XQ LOSS WILD-TYPE     76     32     46
D82V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              29                76
  CLUS_2              18                32
  CLUS_3              54                46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       24      9     61      7
  XQ LOSS WILD-TYPE     58     28     53     15
D82V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              24                58
  CLUS_2               9                28
  CLUS_3              61                53
  CLUS_4               7                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED       16     13     23     13     10
  XQ LOSS WILD-TYPE     42     14     24     10     29
D82V9, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              16                42
  CLUS_2              13                14
  CLUS_3              23                24
  CLUS_4              13                10
  CLUS_5              10                29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED       22     26      8     14      5
  XQ LOSS WILD-TYPE     36     23     13     28     19
D82V10, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              22                36
  CLUS_2              26                23
  CLUS_3               8                13
  CLUS_4              14                28
  CLUS_5               5                19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
