Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-B7-5816-01A-21D-1598-02	TCGA-B7-5818-01A-11D-1598-02	TCGA-BR-4183-01A-02D-1128-02	TCGA-BR-4184-01A-01D-1128-02	TCGA-BR-4187-01A-01D-1128-02	TCGA-BR-4188-01A-01D-1128-02	TCGA-BR-4191-01A-02D-1128-02	TCGA-BR-4201-01A-01D-1128-02	TCGA-BR-4253-01A-01D-1128-02	TCGA-BR-4255-01A-01D-1128-02	TCGA-BR-4256-01A-01D-1128-02	TCGA-BR-4257-01A-01D-1128-02	TCGA-BR-4267-01A-01D-1128-02	TCGA-BR-4279-01A-01D-1128-02	TCGA-BR-4280-01A-01D-1128-02	TCGA-BR-4292-01A-01D-1128-02	TCGA-BR-4294-01A-01D-1128-02	TCGA-BR-4357-01A-01D-1154-02	TCGA-BR-4363-01A-01D-1154-02	TCGA-BR-4366-01A-01D-1154-02	TCGA-BR-4367-01A-01D-1154-02	TCGA-BR-4368-01A-01D-1154-02	TCGA-BR-4369-01A-01D-1154-02	TCGA-BR-4370-01A-01D-1154-02	TCGA-BR-6452-01A-12D-1798-02	TCGA-BR-6453-01A-11D-1798-02	TCGA-BR-6454-01A-11D-1798-02	TCGA-BR-6455-01A-11D-1798-02	TCGA-BR-6456-01A-11D-1798-02	TCGA-BR-6457-01A-21D-1798-02	TCGA-BR-6458-01A-11D-1798-02	TCGA-BR-6564-01A-12D-1880-02	TCGA-BR-6565-01A-11D-1798-02	TCGA-BR-6566-01A-11D-1798-02	TCGA-BR-6705-01A-12D-1880-02	TCGA-BR-6706-01A-11D-1880-02	TCGA-BR-6707-01A-11D-1880-02	TCGA-BR-6710-01A-11D-1880-02	TCGA-BR-6801-01A-11D-1880-02	TCGA-BR-6802-01A-11D-1880-02	TCGA-BR-6803-01A-11D-1880-02	TCGA-BR-6852-01A-11D-1880-02	TCGA-CD-5798-01A-11D-1598-02	TCGA-CD-5799-01A-11D-1598-02	TCGA-CD-5800-01A-11D-1598-02	TCGA-CD-5801-01A-11D-1598-02	TCGA-CD-5802-01A-11D-1598-02	TCGA-CD-5803-01A-11D-1598-02	TCGA-CD-5813-01A-11D-1598-02	TCGA-CG-4300-01A-01D-1154-02	TCGA-CG-4301-01A-01D-A326-26	TCGA-CG-4304-01A-01D-A326-26	TCGA-CG-4305-01A-01D-1154-02	TCGA-CG-4306-01A-01D-1154-02	TCGA-CG-4436-01A-01D-1154-02	TCGA-CG-4437-01A-01D-1798-02	TCGA-CG-4440-01A-01D-A326-26	TCGA-CG-4441-01A-01D-1798-02	TCGA-CG-4442-01A-01D-1154-02	TCGA-CG-4443-01A-01D-1154-02	TCGA-CG-4444-01A-01D-A326-26	TCGA-CG-4449-01A-01D-A326-26	TCGA-CG-4455-01A-01D-1154-02	TCGA-CG-4462-01A-01D-1154-02	TCGA-CG-4465-01A-01D-1154-02	TCGA-CG-4466-01A-01D-1154-02	TCGA-CG-4469-01A-01D-1154-02	TCGA-CG-4472-01A-01D-1154-02	TCGA-CG-4474-01A-02D-1154-02	TCGA-CG-4475-01A-01D-1154-02	TCGA-CG-4476-01A-01D-1154-02	TCGA-CG-4477-01A-01D-1154-02	TCGA-CG-5717-01A-11D-1598-02	TCGA-CG-5718-01A-11D-1598-02	TCGA-CG-5719-01A-11D-1598-02	TCGA-CG-5720-01A-11D-1598-02	TCGA-CG-5721-01A-11D-1598-02	TCGA-CG-5722-01A-21D-1598-02	TCGA-CG-5723-01A-11D-1598-02	TCGA-CG-5724-01A-11D-1598-02	TCGA-CG-5726-01A-11D-1598-02	TCGA-CG-5727-01A-11D-1598-02	TCGA-CG-5728-01A-11D-1598-02	TCGA-CG-5730-01A-11D-1598-02	TCGA-CG-5732-01A-11D-1598-02	TCGA-CG-5733-01A-11D-1598-02	TCGA-CG-5734-01A-11D-1598-02	TCGA-D7-5577-01A-01D-1598-02	TCGA-D7-5578-01A-01D-1598-02	TCGA-D7-5579-01A-01D-1598-02	TCGA-D7-6518-01A-11D-1798-02	TCGA-D7-6519-01A-11D-1798-02	TCGA-D7-6520-01A-11D-1798-02	TCGA-D7-6521-01A-11D-1798-02	TCGA-D7-6522-01A-11D-1798-02	TCGA-D7-6524-01A-11D-1798-02	TCGA-D7-6525-01A-11D-1798-02	TCGA-D7-6526-01A-11D-1798-02	TCGA-D7-6527-01A-11D-1798-02	TCGA-D7-6528-01A-11D-1798-02	TCGA-D7-6815-01A-11D-1880-02	TCGA-D7-6817-01A-11D-1880-02	TCGA-D7-6818-01A-11D-1880-02	TCGA-D7-6820-01A-11D-1880-02	TCGA-D7-6822-01A-11D-1880-02	TCGA-EQ-5647-01A-01D-1598-02	TCGA-F1-6874-01A-11D-1880-02	
Amplification Peak  1	1q42.3  	chr1:234797952-235344760(probes 1576:1594)    	chr1:234911616-235096972(probes 1583:1584)    	chr1:234826557-235347965(probes 1577:1595)    	0.037544	   0.037544		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	1	0	1	2	0	0	0	2	2	0	2	0	0	1	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	1	0	0	0	1	2	0	0	0	2	0	2	2	0	
Amplification Peak  2	6p21.1  	chr6:43508397-44379101(probes 6685:6708)        	chr6:43599396-43656923(probes 6688:6691)        	chr6:43532603-44391914(probes 6686:6710)        	0.015581	   0.015581		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	1	0	1	0	1	0	0	
Amplification Peak  3	7p11.2  	chr7:54995267-55593325(probes 7832:7851)        	chr7:55079144-55487227(probes 7835:7846)        	chr7:55036384-55777577(probes 7833:7855)        	0.0040235	  0.0040235		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	1	0	1	0	2	0	1	1	0	2	0	0	2	0	0	0	0	0	0	1	0	0	1	0	0	1	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	1	1	1	1	0	0	1	0	0	0	0	0	1	1	1	0	0	0	1	0	0	0	0	1	0	2	1	0	0	0	1	0	1	0	0	0	0	1	0	1	
Amplification Peak  4	7q21.2  	chr7:90901353-97945867(probes 8110:8217)        	chr7:91788888-92079923(probes 8127:8128)        	chr7:90884479-99219242(probes 8107:8233)        	0.00074501	 0.00074501		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	2	0	1	0	2	2	1	1	0	0	0	0	2	0	0	0	0	2	0	1	0	0	1	0	2	1	1	0	2	0	2	0	0	0	0	0	2	0	0	0	1	2	1	2	0	0	0	1	0	0	0	0	0	1	1	2	0	0	0	1	0	0	1	0	1	0	0	2	0	0	1	2	0	1	1	1	0	0	0	0	1	
Amplification Peak  5	8p23.1  	chr8:10975654-12724285(probes 8812:8824)        	chr8:11552479-12724284(probes 8821:8823)        	chr8:8661010-14022484(probes 8793:8828)          	0.000235	   0.000235		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	2	0	0	0	0	1	0	2	0	1	0	0	0	2	0	0	0	1	0	1	0	1	2	1	0	1	0	2	2	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	1	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	2	0	1	0	0	1	0	0	2	1	0	0	0	0	0	0	0	0	1	0	0	0	0	2	2	0	0	
Amplification Peak  6	8q24.21 	chr8:128070146-128865434(probes 9754:9777)    	chr8:128633156-128755114(probes 9773:9774)    	chr8:124221423-130939736(probes 9687:9823)    	3.7757e-06	 3.7757e-06		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	0	0	0	0	1	1	0	1	0	1	1	0	0	2	0	2	2	2	2	1	1	1	2	1	0	1	1	0	1	0	2	0	2	0	2	0	2	0	0	1	0	0	1	0	1	0	2	1	1	0	1	0	1	2	2	1	1	1	2	2	1	0	0	1	1	2	0	2	0	0	0	2	0	0	0	0	0	2	2	2	1	1	0	1	0	0	2	1	2	0	1	0	0	1	1	2	0	2	2	1	1	1	2	2	0	
Amplification Peak  7	10q26.13	chr10:122709888-123893564(probes 11642:11665)	chr10:123173306-123462606(probes 11651:11655)	chr10:122526102-123909587(probes 11627:11667)	0.0073872	  0.0073872		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	2	0	0	0	0	0	0	1	0	0	0	0	0	1	0	
Amplification Peak  8	11q13.3 	chr11:67821083-70533128(probes 12274:12335)    	chr11:68596356-69788580(probes 12299:12316)    	chr11:68596356-70099588(probes 12299:12321)    	0.11927	    0.11927		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	2	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak  9	12p12.1 	chr12:24832434-25872659(probes 12911:12922)    	chr12:25336355-25853175(probes 12912:12921)    	chr12:24633077-26574659(probes 12902:12938)    	0.00023194	 0.00023194		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	2	0	1	0	2	0	
Amplification Peak 10	12q15   	chr12:68032120-70142158(probes 13387:13448)    	chr12:68896851-69584420(probes 13420:13433)    	chr12:62963335-72885145(probes 13326:13492)    	1.076e-07	  1.076e-07		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	1	0	2	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	1	0	0	2	0	0	0	2	0	
Amplification Peak 11	13q22.1 	chr13:73543082-74325003(probes 14299:14348)    	chr13:73777505-73795944(probes 14326:14327)    	chr13:73629651-74022532(probes 14308:14338)    	0.067385	   0.067385		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	1	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	2	0	0	0	0	1	1	0	1	0	0	1	0	0	1	2	2	0	2	0	0	2	0	1	0	0	0	0	1	2	0	0	1	0	0	1	0	0	1	0	1	0	0	0	0	1	1	0	0	1	2	2	1	0	0	0	0	0	0	0	1	0	1	0	0	1	2	1	0	
Amplification Peak 12	15q26.1 	chr15:87285740-102531392(probes 15613:15724)  	chr15:90319949-90702283(probes 15640:15651)    	chr15:90206519-92287049(probes 15636:15666)    	0.10362	    0.10362		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	2	0	2	0	0	1	0	0	1	0	0	0	0	0	0	1	1	0	1	0	2	0	0	
Amplification Peak 13	17q12   	chr17:31682027-36884102(probes 16464:16516)    	chr17:33599987-33878109(probes 16482:16485)    	chr17:33599987-33974593(probes 16482:16488)    	0.18836	    0.24899		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	1	0	1	0	
Amplification Peak 14	17q12   	chr17:35621565-39490730(probes 16516:16531)    	chr17:37156334-39490729(probes 16529:16530)    	chr17:35264025-40351039(probes 16508:16562)    	0.0055736	  0.0078855		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	1	1	1	0	1	0	
Amplification Peak 15	18q11.2 	chr18:19444890-20134873(probes 17130:17171)    	chr18:19563371-19756416(probes 17137:17148)    	chr18:19303059-20698116(probes 17123:17179)    	0.0039842	  0.0039842		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	1	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	2	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	1	2	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	2	1	0	1	0	0	0	2	0	
Amplification Peak 16	19q12   	chr19:29981243-30434489(probes 18008:18023)    	chr19:30189868-30401284(probes 18014:18020)    	chr19:28641462-31646067(probes 17969:18059)    	8.9159e-10	 8.9159e-10		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	2	0	0	2	0	0	0	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	2	0	2	1	0	1	1	0	0	0	2	2	2	0	0	2	0	2	2	0	
Amplification Peak 17	20q13.2 	chr20:51594458-53175651(probes 18954:18983)    	chr20:51900885-52669972(probes 18958:18969)    	chr20:49909694-53869679(probes 18921:18997)    	0.00013853	 0.00013853		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	1	1	0	0	2	1	0	1	0	0	0	0	1	0	2	2	0	2	0	0	2	0	0	0	2	1	1	0	1	0	1	0	0	1	1	0	2	0	0	1	0	1	1	1	0	0	2	1	1	1	1	0	2	0	2	1	0	2	1	2	1	0	0	2	1	1	0	1	1	0	0	2	0	0	0	0	0	1	1	2	0	1	2	0	0	1	2	0	1	0	1	0	0	0	1	2	2	2	1	1	0	2	2	2	1	
Deletion Peak  1	1p36.11 	chr1:26023101-28275742(probes 242:279)      	chr1:26995371-27087726(probes 259:262)      	chr1:25154630-31085048(probes 237:311)      	0.001659	   0.001659		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	1	0	0	1	0	0	1	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	1	0	0	1	1	0	
Deletion Peak  2	2q37.2  	chr2:233474044-243199373(probes 2981:3081)	chr2:236675366-236770884(probes 3028:3029)	chr2:234746855-238191480(probes 2998:3042)	0.017589	   0.017589		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	
Deletion Peak  3	3p14.2  	chr3:59563588-61184955(probes 3578:3606)    	chr3:61080717-61093160(probes 3590:3591)    	chr3:59563589-61509942(probes 3579:3618)    	0.00028751	 0.00028751		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	1	0	0	0	1	1	0	0	0	1	0	1	1	0	1	0	0	2	1	0	
Deletion Peak  4	3p11.1  	chr3:90309030-93822733(probes 3839:3853)    	chr3:90311099-93822732(probes 3842:3852)    	chr3:90311099-93933837(probes 3842:3855)    	0.050646	   0.050646		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	
Deletion Peak  5	4q22.1  	chr4:91690999-91950491(probes 4928:4955)    	chr4:91779906-91809584(probes 4941:4944)    	chr4:91690998-92356859(probes 4927:4985)    	0.0065341	   0.018497		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	2	0	1	0	0	1	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	1	0	1	1	0	1	0	
Deletion Peak  6	4q34.3  	chr4:170615980-191154276(probes 5360:5465)	chr4:182304566-182642076(probes 5423:5427)	chr4:170788183-191154276(probes 5361:5465)	0.00037796	  0.0010767		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	1	0	0	1	1	1	0	0	0	1	1	0	0	1	1	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	1	1	1	1	1	1	0	1	1	1	0	
Deletion Peak  7	5q12.1  	chr5:59050959-59380706(probes 5773:5792)    	chr5:59260455-59314804(probes 5786:5789)    	chr5:57208662-70843315(probes 5732:5873)    	1.8769e-07	 1.8769e-07		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	1	1	0	0	0	1	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	1	0	0	0	1	1	1	1	1	1	0	1	2	1	0	
Deletion Peak  8	6p25.3  	chr6:1867395-2191114(probes 6415:6428)        	chr6:2066280-2115883(probes 6420:6421)        	chr6:1-3349392(probes 6398:6454)                	2.3392e-05	 2.3392e-05		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	1	1	0	0	0	1	0	0	1	1	0	0	0	2	0	0	
Deletion Peak  9	7q36.1  	chr7:129240874-159138663(probes 8592:8768)	chr7:148491709-151879277(probes 8688:8706)	chr7:139904503-159138663(probes 8663:8768)	0.014174	   0.014174		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	1	1	0	0	0	
Deletion Peak 10	9p23    	chr9:9455034-9627050(probes 10005:10012)      	chr9:9504994-9520129(probes 10010:10011)      	chr9:9067453-10058891(probes 9986:10045)     	5.7062e-09	 5.7062e-09		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	1	1	0	0	1	1	1	0	0	1	1	0	1	0	0	0	0	0	1	1	0	0	0	1	1	1	0	0	1	1	0	0	1	1	0	0	2	1	1	0	0	1	1	0	0	0	1	0	1	0	0	0	
Deletion Peak 11	9p21.3  	chr9:21852135-21983214(probes 10137:10144)  	chr9:21864827-21973073(probes 10138:10143)  	chr9:20946198-23494217(probes 10114:10161)  	6.3569e-07	 6.3569e-07		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	0	0	1	1	0	0	0	0	1	1	0	1	1	1	0	0	0	1	0	1	0	0	0	1	0	1	1	1	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	1	2	1	0	0	1	1	0	0	2	1	0	0	0	0	0	
Deletion Peak 12	10q23.31	chr10:88849958-89802725(probes 11338:11359)	chr10:89547681-89744114(probes 11345:11353)	chr10:89363860-89814370(probes 11339:11361)	0.011777	   0.011777		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	1	1	0	2	1	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	
Deletion Peak 13	11p15.5 	chr11:1-27836474(probes 11765:11952)         	chr11:2463574-3136982(probes 11798:11809)    	chr11:2463574-3555006(probes 11798:11812)    	0.22053	    0.22053		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	1	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	
Deletion Peak 14	16q23.1 	chr16:78583111-78648685(probes 16134:16149)	chr16:78587298-78594832(probes 16137:16138)	chr16:78477442-79008568(probes 16105:16168)	3.9135e-08	 3.9135e-08		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	1	0	0	1	0	1	0	0	0	0	1	1	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	1	0	1	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	1	1	0	0	0	0	1	1	1	0	0	0	1	1	0	1	0	1	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	1	1	0	0	0	0	
Deletion Peak 15	17p11.2 	chr17:8529294-25479095(probes 16287:16360)  	chr17:19916064-25336340(probes 16343:16359)	chr17:19916064-25486304(probes 16343:16362)	0.24847	    0.24847		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	1	1	1	0	0	1	1	1	1	1	0	0	1	1	0	0	
Deletion Peak 16	17q24.3 	chr17:70127295-70640568(probes 16859:16882)	chr17:70477558-70521358(probes 16870:16871)	chr17:70412496-70603392(probes 16864:16880)	0.077942	   0.077942		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	
Deletion Peak 17	18q21.2 	chr18:38271779-78077248(probes 17491:17674)	chr18:48510732-49746888(probes 17557:17568)	chr18:36926466-78077248(probes 17486:17674)	0.0010767	  0.0010767		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	1	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	1	1	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	0	1	0	1	0	1	1	0	0	0	0	1	0	0	0	1	0	0	0	1	0	1	1	1	0	0	0	0	1	1	0	0	1	0	0	0	1	1	0	
Deletion Peak 18	20p12.1 	chr20:14390118-15232555(probes 18442:18481)	chr20:14664211-15165122(probes 18461:18467)	chr20:14610501-15183333(probes 18455:18477)	0.031996	   0.031996		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	1	1	0	
Deletion Peak 19	22q13.31	chr22:45576204-51304566(probes 19565:19597)	chr22:47025709-51304566(probes 19584:19597)	chr22:45804498-51304566(probes 19566:19597)	0.0091074	  0.0091074		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	1	0	0	0	0	1	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	1	1	0	1	0	1	0	1	1	1	0	
Amplification Peak  1 - CN values	1q42.3  	chr1:234797952-235344760(probes 1576:1594)    	chr1:234911616-235096972(probes 1583:1584)    	chr1:234826557-235347965(probes 1577:1595)    	0.037544	   0.037544		Actual Copy Change Given	0.017414	-0.051408	1.68	-0.0086424	0	0.022192	0.059372	0.0028804	0.0021646	0.34516	0.0076102	0.69153	1.3867	0.007076	0.0032464	0.015887	0.95749	3.5684	-0.0021914	1.4087	0.051661	-0.0083783	0.35594	0.0017201	0	0.0010297	0.60455	0.0068442	-0.34763	0.025753	0.34696	-0.21608	0.31739	0.049659	0.21192	-0.018501	0.017156	0.011764	0.0070436	0.012691	0.0021586	0.0083692	0.011479	-0.057441	0.84547	-0.0065912	0.036566	0.064554	0.35645	0.0063919	0.0063228	0.00047537	0.0036283	0.02116	0.21757	0.22309	0.043725	-0.044325	0.011907	0.017118	-0.11536	4.3851	0.025371	0.0087713	-0.015502	0.84116	0.18494	0.4621	0	-0.1114	0.25444	-0.01769	0.0097202	0.0032088	0.11612	-0.0032244	0.0019521	0	6.0677e-05	-0.33346	0.012832	-0.017868	-0.42484	0.46622	0.056005	0.012184	0.0066091	-0.024616	0.28734	0.49985	-0.013141	-0.32882	0.69461	0.52696	0.00081914	0.003847	-0.036228	0.57538	2.3691	-0.10714	0.0035047	0.29735	2.0406	0.045013	1.3648	1.235	0.0058472	
Amplification Peak  2 - CN values	6p21.1  	chr6:43508397-44379101(probes 6685:6708)        	chr6:43599396-43656923(probes 6688:6691)        	chr6:43532603-44391914(probes 6686:6710)        	0.015581	   0.015581		Actual Copy Change Given	0.01902	0.015418	0.15219	0.28102	-0.0038721	-0.0026702	0.52087	0.0054323	0.01564	0.1245	0.0021885	0.18837	0.64753	0.0093517	0.0079964	0.013245	-0.90884	0	-0.63372	0.40635	0.10673	0.40242	0.10367	-0.0032155	0.0056623	0.0058525	0.24586	0.00092935	0.91143	0.4221	0.21039	-0.016374	0.72988	0.00052995	0.03192	-0.025806	0.00059611	0.013116	0.012499	0.0067266	0.019958	-0.020037	-0.054577	0.16216	-0.048219	0.0019488	0.036895	0.066511	0.091058	0	0.0090599	-0.0047127	-0.0065979	0.005032	0.15821	0.31416	0.081175	0.017624	0.0091963	0.11339	0	3.2079	0.07727	0.0024331	-0.0013147	0.13074	-0.017531	-0.00728	-0.0089537	-0.048106	0.011024	0.19387	0.044022	2.7413	-0.20169	0.0038199	-3.9013e-05	-0.039233	0	-0.13761	0.0027651	5.8847	0	2.9627	0.51217	0.01137	-0.049492	0.0080485	-0.20344	0.039038	0.14194	-0.73312	-0.34847	-0.22245	-0.0024918	0.00411	-0.14126	0.74786	0.86138	3.5398	0.83992	0	0.44806	0.24842	0.6939	-0.04969	-0.0058878	
Amplification Peak  3 - CN values	7p11.2  	chr7:54995267-55593325(probes 7832:7851)        	chr7:55079144-55487227(probes 7835:7846)        	chr7:55036384-55777577(probes 7833:7855)        	0.0040235	  0.0040235		Actual Copy Change Given	0	0.66432	6	0.18986	0.14715	0.0045403	0.51548	-0.004014	-0.013536	-0.15443	-0.013199	0.20422	-0.0030413	-0.0036097	0.015949	4.5241e-05	0.030182	-0.096641	0.0045061	0.010887	0.073802	0.40542	6	0.49176	0.014143	-0.0052788	0.56378	-0.0058046	0.66465	0.015299	6	-0.0046443	0.40801	0.34105	0.1385	6	0.059543	0.0046484	1.1532	-0.0025679	0.016407	-0.0042941	0.0028102	0.26165	0.24497	0.65136	0.021921	-0.113	0.38236	0.22334	0.0030374	0.61429	0.40382	-0.0013227	0.75393	0.0057318	0.88819	0.10383	-0.0052976	0.0049082	-0.2303	-0.011021	0.0051179	-0.011899	0.0035833	0.87938	0.78408	0.46941	0.32538	0.36208	0.67229	-0.028536	-0.014958	0.52421	0	-0.00049996	0.005776	0.030458	0.0057595	0.86766	0.81271	0.73774	0.01124	-0.018138	-0.028764	0.51476	0.096164	0.039558	0.26093	0.25075	0.37575	0.15273	0.90368	0.5965	0.0023634	0.019997	0.0060861	0.46692	-0.05078	0.61016	0.047188	-0.099001	-0.56225	0.2736	0.66577	0.011266	0.61787	
Amplification Peak  4 - CN values	7q21.2  	chr7:90901353-97945867(probes 8110:8217)        	chr7:91788888-92079923(probes 8127:8128)        	chr7:90884479-99219242(probes 8107:8233)        	0.00074501	 0.00074501		Actual Copy Change Given	0	0.69056	0.016389	0.1538	0.14715	0.0045403	0.51548	-0.004014	-0.023067	0.042964	-0.013199	0.20422	-0.058383	-0.0036097	0.015949	0.0052989	0.035535	0.32076	0.0045061	0.077474	0.073802	0.40542	0.14978	0.29101	0.014143	-0.0052788	5.9278	-0.0058046	0.65545	0.015299	6	2.2674	0.40801	0.34105	0.26778	0.11194	0.059543	0.0046484	1.1778	-0.0025679	0.016407	0.00898	0.0028102	3.4576	0.044736	0.65136	0.021921	-0.113	0.39257	0.22334	1.2661	0.61429	0.40382	-0.0013227	1.6098	0.0057318	0.90548	0.19872	-0.0052976	-0.84585	-0.001672	-0.011021	1.564	0.011664	0.0035833	0.03278	0.78408	3.9146	0.33916	6	0.21519	-0.00016136	-0.014958	0.61478	0	-0.00049996	0.005776	0.030458	-0.025709	0.86766	0.81271	1.1163	0.01124	-0.018138	-0.028764	0.49853	0.096164	-0.038826	0.33006	-0.22911	0.37575	0.12666	0.28153	2.2225	0.0023634	0.019997	0.67627	1.6758	0.19574	0.56578	0.47578	0.47233	-0.037414	-0.37154	-0.030962	0.011266	0.61787	
Amplification Peak  5 - CN values	8p23.1  	chr8:10975654-12724285(probes 8812:8824)        	chr8:11552479-12724284(probes 8821:8823)        	chr8:8661010-14022484(probes 8793:8828)          	0.000235	   0.000235		Actual Copy Change Given	0.42325	-0.041092	4.2131	0.19455	0.13226	0.0011646	-0.52456	0.4261	-0.028909	6	0.27389	0.78258	-0.0099094	0.0071625	-0.006305	1.3035	-0.93045	-0.13515	-0.0032009	0.30619	-0.049448	0.40222	-0.27667	0.41497	0.96835	0.43225	-0.096274	0.68173	-0.36039	2.4172	6	-0.2292	-0.4616	0.084004	-0.087415	0.0048085	1.0226	-0.00158	-0.012637	0.24832	0.17862	0.34655	-0.073856	0.23954	-0.51808	-0.030156	-0.46531	0.06539	-0.3338	-0.042658	-0.40139	-0.010533	0.78756	-0.14132	-0.74443	0.20516	-0.30461	0.39402	0.63657	-0.85979	-0.44314	-0.61972	0.30537	0.21705	-0.036155	0.1053	0.77669	0.88549	-0.016325	-0.68535	0.5654	0.15892	0.041535	-0.61133	-0.010024	0.049144	-0.0099229	0.1981	-0.0027538	-0.28644	1.5876	-0.024844	0.40198	-0.67461	-0.35527	0.59795	-0.05254	-0.024029	6	0.33683	-0.22748	0.13401	-0.0088089	-0.21862	-0.0031929	0.25909	0	-0.95292	0.72183	-0.64535	-0.17129	0.23794	0.28367	4.8797	1.346	-0.46757	-0.0089595	
Amplification Peak  6 - CN values	8q24.21 	chr8:128070146-128865434(probes 9754:9777)    	chr8:128633156-128755114(probes 9773:9774)    	chr8:124221423-130939736(probes 9687:9823)    	3.7757e-06	 3.7757e-06		Actual Copy Change Given	0.42325	-0.017188	-0.0016393	0.21464	0.13226	-0.0056914	0.7665	0.4261	-0.016114	0.35493	0.27389	0.78022	0.79969	0.0071625	0.015033	1.3035	-0.92875	1.318	1.2368	1.3733	1.0175	0.40222	0.62017	0.35809	0.95878	0.43225	-0.02115	0.68173	0.58724	0.27659	0.36925	-0.00026486	1.1498	0.084004	2.7245	0.0048085	1.0226	-0.00158	1.1383	0.24832	0.17078	0.40836	0.025781	0.063376	0.88495	-0.050018	0.87254	0.13184	1.709	0.71114	0.40629	0	0.80617	0	0.80608	1.1479	6	0.47466	0.69516	0.82774	5.943	6	0.30537	0.21705	0.007831	0.63115	0.80843	0.96523	-0.016325	4.5009	0.031399	-0.019431	0.1879	1.6916	-0.010024	0.049144	-0.0099229	0.1981	0.014922	6	1.6244	1.4701	0.40198	0.69222	0.1839	0.57117	0.093956	-0.024029	1.861	0.58427	1.3976	0.17034	0.73455	-0.21862	-0.0031929	0.43141	0.44384	1.8637	-0.26306	0.92919	1.0901	0.34306	0.41851	0.39623	1.4573	1.352	-0.0089595	
Amplification Peak  7 - CN values	10q26.13	chr10:122709888-123893564(probes 11642:11665)	chr10:123173306-123462606(probes 11651:11655)	chr10:122526102-123909587(probes 11627:11667)	0.0073872	  0.0073872		Actual Copy Change Given	-0.0089105	-0.036795	6	-0.097063	2.0449	0	0.21024	-0.0015445	-0.011629	0.16977	-0.0024706	-0.26929	-0.00034623	-0.35236	-0.0040208	-0.02034	0	-0.04146	0	0.81482	-0.17146	0.40591	-0.16366	0.0003706	-0.00096398	0.0036904	-0.047614	-0.0085313	0.62241	0.53042	-0.17873	0.21158	0.17052	-0.010082	0.01556	-0.037164	-0.03739	-0.015502	-0.0090419	-0.01149	1.375	-0.012858	-0.026139	-0.2747	0	0.34442	-0.45228	0.073998	0.13337	0.098638	-0.015749	0.58261	0.0022562	-0.0096834	-0.24699	-0.17582	-0.031154	-0.018761	-0.027337	0.87766	-0.27135	1.5157	-0.31177	-0.019796	-0.015241	-0.81746	0.14532	0.94048	-0.0135	-0.34708	0.20303	0.13068	-0.0043282	6	-0.037714	0.00056393	-0.00074595	-0.039182	0.0079788	0.069309	-0.014071	-0.031927	-0.025266	0.14732	0.39097	0	-0.069391	-0.0010812	0	0.026531	-0.12692	0.48463	2.0573	-0.22649	0.043399	-0.013143	0.028347	0.025349	-0.31165	0.3436	-0.37296	-0.32609	0.0053967	-0.008359	-0.058818	0.46028	-0.0029504	
Amplification Peak  8 - CN values	11q13.3 	chr11:67821083-70533128(probes 12274:12335)    	chr11:68596356-69788580(probes 12299:12316)    	chr11:68596356-70099588(probes 12299:12321)    	0.11927	    0.11927		Actual Copy Change Given	0.013296	-0.0034523	-0.01245	-0.11847	0.017547	-0.0029576	-0.0084027	-0.0032228	-0.0032036	-0.0036713	-0.0005017	0.2035	-0.010895	-0.33759	0.011123	-0.0023487	-0.96861	0.26998	-0.0092653	0.78291	0.1669	0.40287	0.30833	-0.0057992	-0.0032583	0.0042166	1.2527	0.66104	0.088727	0.9997	0.029967	-0.01355	0.0039471	-0.0027471	-0.024692	0.012121	-0.0064492	-0.0013537	-0.0045933	-0.00077428	-0.0012705	0.009366	-0.019782	3.6045	0.039441	-0.010814	-0.41858	0.042779	-0.17141	0.32378	-0.27047	0.00094167	0	0.0099878	0	0.022948	-0.018414	0.047719	-0.017233	-0.12468	0.23937	1.1456	6	0.015828	0.013515	-0.0042857	-0.014035	0.48139	-0.01127	0	0.7159	-0.088064	0.034657	-0.048573	0.01353	0.04745	-0.0069043	0.19271	-0.0040334	1.7728	-0.003551	0.23721	0.026125	0.0034019	-0.024702	-0.0072716	0.078284	-0.040372	-0.14848	-0.061919	-0.12308	0.17291	-0.0047504	-0.19799	0.0073068	0	0.032154	-0.10586	-0.24687	-0.20524	-0.43231	-0.0011179	0	-0.04032	-0.095531	0.058644	-0.0055118	
Amplification Peak  9 - CN values	12p12.1 	chr12:24832434-25872659(probes 12911:12922)    	chr12:25336355-25853175(probes 12912:12921)    	chr12:24633077-26574659(probes 12902:12938)    	0.00023194	 0.00023194		Actual Copy Change Given	0.0080448	0.0056469	-0.13728	-0.013993	-0.0056788	0.0030105	0.0028327	0.0021605	0.0088619	6	0.0041888	-0.26589	-0.15087	0.0075178	0.01467	0	0.040858	-0.074298	0.0026757	0.049758	-0.013129	0.41495	0.015392	0	0.0060457	-0.0020474	0.61975	0.012641	-0.089331	0.03939	0.024931	0.0045089	-0.042947	0.1635	0.10576	0.0025572	-0.011572	0	1.1678	0.012661	-0.0072005	-0.010922	0.11073	0.31232	-0.32005	-0.00047023	6	0.22367	0.40225	0.069354	0.015614	0.0057416	-0.0015468	0.0067069	-0.1866	-0.00044514	0.046979	0.0018442	0	0.013483	0.19514	0.060443	-0.011883	-0.0022722	0.0058773	0.12089	0	6	0.27504	0.039569	-0.20261	-0.32701	-0.015277	0.0065071	-0.0099493	0.00094065	0.0049266	0.20821	0.0069626	0.80456	0.0060607	0.36707	0.015028	-0.080922	-0.52851	0.018612	0.0034863	0	0.30696	-0.18916	0.15139	6	0.018597	0.086969	0.03564	0.00037099	0.036497	0.23665	0.03103	-0.20475	0.091883	4.0978	-0.038738	0.66002	-0.73923	6	0.00667	
Amplification Peak 10 - CN values	12q15   	chr12:68032120-70142158(probes 13387:13448)    	chr12:68896851-69584420(probes 13420:13433)    	chr12:62963335-72885145(probes 13326:13492)    	1.076e-07	  1.076e-07		Actual Copy Change Given	0.0080448	0.050319	0.31619	0	-0.0056788	0.0030105	0.51231	0.0021605	0.0039007	0.0025789	0.0041888	-0.26589	0.56591	0.0075178	-0.0022611	0	0.07836	-0.071954	0.0026757	0.044834	-0.021766	0.41495	2.1874	0	0.0060457	-0.0020474	0.6218	0.012641	-0.089331	0.03939	0.024931	0.0045089	-0.042947	0.1635	-0.056204	0.0025572	-0.011572	0	0	0.012661	-0.0072005	0.018757	0.12006	0.31232	0.024796	-0.00047023	6	0.027306	0.3862	-0.19289	5.4677	0.0057416	-0.0015468	0.0067069	-0.4011	-0.00044514	0.046979	0.015581	0	-0.87327	1.0859	0.012409	6	-0.0022722	0.0058773	0.12089	0	0.50018	0.27132	6	-0.21324	0.13365	-0.015277	0.035246	-0.0099493	0.00094065	0.0049266	0.20821	0.00633	0.11094	0.0060607	0.36696	0.012567	-0.080922	0.0044365	0.018612	0.0034863	0	0.24988	0.064895	0.10704	6	0.018597	0.086969	0.03564	0.00037099	0.0086941	0.64238	0.63009	-0.20475	0.091883	4.8599	-0.038738	0.008404	0.050554	6	0.00667	
Amplification Peak 11 - CN values	13q22.1 	chr13:73543082-74325003(probes 14299:14348)    	chr13:73777505-73795944(probes 14326:14327)    	chr13:73629651-74022532(probes 14308:14338)    	0.067385	   0.067385		Actual Copy Change Given	0.0095863	0.72034	0.093584	-0.12012	0.13384	0.32669	-0.010771	-0.013074	-0.014915	-0.15197	-0.0056329	0.17417	0.0089371	-0.017598	0.91674	-0.0040554	-0.61926	2.114	-0.025416	-0.091557	0.11026	-0.023361	0.25435	-0.0049608	-0.0069871	0.22204	-0.11298	-0.015916	-0.065002	0.064311	-0.016884	-0.2132	0.29892	0.32148	-0.10618	-0.0059661	0.5234	0.0075252	2.2392	-0.0067879	-0.0081158	-0.0025725	0	0.36896	0.83649	-0.007679	0.42394	0.016593	-0.13087	0.3813	-0.38331	0.0092565	0.3801	1.0087	1.5412	-0.31797	1.2206	0.0069192	0.0070797	2.801	-0.5933	0.84145	-0.035115	0.0097128	-0.0093833	-0.23848	0.79333	0.97731	0.26707	-0.29992	0.63118	-0.010436	-0.073052	0.56141	0.23653	-0.060425	0.52327	-0.042515	0.33562	0.031116	-0.039555	0.045685	-0.019728	0.64451	0.30826	-0.024554	0.20435	0.45638	0.98805	3.4525	0.50468	0	-0.29221	0.0024345	-0.0064768	0.163	-0.58335	0.22277	0.4995	0.014155	0.73324	-0.025507	0.079887	0.3235	2.4285	0.43706	-0.0069645	
Amplification Peak 12 - CN values	15q26.1 	chr15:87285740-102531392(probes 15613:15724)  	chr15:90319949-90702283(probes 15640:15651)    	chr15:90206519-92287049(probes 15636:15666)    	0.10362	    0.10362		Actual Copy Change Given	-0.017311	-0.023467	0.18771	-0.0068225	-0.010441	0.0014399	0.18504	0.0052835	-0.015401	-0.0030833	0.0069705	-0.26696	0.8115	0.0028019	-0.0053017	-0.054734	-0.67282	1.4041	0.0024473	-0.056351	0.026944	-0.0048812	0.20807	0.0033833	0.0015328	0	1.6813	-0.0074167	-0.10258	-0.087158	0.33754	0	-0.060881	0	0	-0.027769	-0.033893	-0.016934	-0.0065164	-0.0030227	-4.7526e-05	-0.020547	0.0405	0.22547	0.68339	-0.26606	-0.0018038	0.050767	-0.26575	-0.17188	-0.0064892	-0.065533	-0.0064888	-0.010505	-0.42905	0.27857	-0.27716	-0.013034	-0.016989	0.048032	3.9655	1.6879	-0.037065	-0.024137	-0.024926	-0.37265	0.020133	-0.025508	0.10666	-0.0013056	0.20717	0.12763	-0.00064098	-0.016469	0.65587	0.0017161	0.0039076	-0.035625	0.0086437	0.12559	-0.0042981	0.39	-0.012886	0.51682	1.27	0.011739	1.1641	0.014771	-0.23072	0.4434	-0.15357	0.14753	0.66176	-0.1153	-0.02267	-0.011986	0.21899	-0.30344	-0.47165	0.38678	0.30282	-0.35668	0.36501	0.0093197	1.354	0.28167	0.00089236	
Amplification Peak 13 - CN values	17q12   	chr17:31682027-36884102(probes 16464:16516)    	chr17:33599987-33878109(probes 16482:16485)    	chr17:33599987-33974593(probes 16482:16488)    	0.18836	    0.24899		Actual Copy Change Given	-0.016429	0.7063	0.048756	-0.0071687	-0.029879	0.022707	0.017248	-0.0031185	-0.010246	0.0034293	0.016992	-0.2565	0.80183	-0.00031003	-0.011122	-0.06041	-0.34164	-0.12068	0.0031301	-0.066745	-0.15554	0	0.16407	0.0079738	0.0047209	0.0035575	0.54598	0.001958	-0.086495	0.028312	-0.35581	0.0052968	0.23104	0.0042679	0.024499	-0.044939	-0.041999	-0.017495	0.0041651	0.011509	0.022746	-0.03343	0.027506	6	0.58368	0.043716	-0.0067616	0.0326	0.079208	0.18826	0.18219	0.0055344	0.003494	-0.0088321	0.18214	0.09307	0.0052815	-0.032199	-0.019786	0.010608	-0.17994	-0.64504	0.27114	-0.036911	-0.02835	0.071239	0.05323	-0.024918	-0.0050498	0.39209	0	0.16512	0.030798	0.033205	0.3841	-0.0069125	-0.014539	0.1966	0.0016659	1.0802	0.0089463	0.0049238	-0.014657	6	0.051093	0.041693	-0.079024	0.045555	-0.059387	-0.26028	-0.035773	-0.3171	-0.036165	0.043194	-0.024768	0.0085533	0.16542	0.3745	0.2949	-0.26367	0.014151	0.31834	0.32779	0.476	-0.060986	0.50863	0.012556	
Amplification Peak 14 - CN values	17q12   	chr17:35621565-39490730(probes 16516:16531)    	chr17:37156334-39490729(probes 16529:16530)    	chr17:35264025-40351039(probes 16508:16562)    	0.0055736	  0.0078855		Actual Copy Change Given	-0.016429	0.69953	0.048756	-0.0071687	-0.029879	0.022707	0.017248	-0.0031185	-0.010246	0.0034293	0.016992	-0.2565	0.041985	-0.00031003	-0.011122	-0.06041	-0.34164	0.67561	0.0031301	-0.066745	-0.15554	0	3.1759	0.0079738	0.0047209	0.0035575	0.54598	0.001958	-0.086495	0.028312	-0.35581	0.0052968	2.8687	0.0042679	0.024499	-0.044939	-0.041999	-0.017495	0.0041651	0.011509	0.022746	-0.03343	0.027506	-0.35107	1.1311	0.043716	-0.0067616	0.0326	0.079208	2.3627	0.18219	0.0055344	0.003494	-0.0088321	0.18214	0.09307	0.43927	-0.032199	-0.019786	0.010608	1.2044	0.075305	0.27114	-0.036911	-0.02835	0.063111	0.05323	-0.024918	-0.0050498	0.30835	0	0.16512	0.030798	0.52284	0.3841	-0.0069125	-0.014539	0.1966	0.0016659	1.6425	0.0089463	-0.38146	-0.014657	-0.021827	0.69544	0.041693	-0.079024	0.045555	-0.059387	-0.26028	-0.035773	-0.3171	-0.036165	0.043194	-0.024768	0.0085533	0.16542	3.899	0.2949	-0.26367	6	0.31834	0.32779	0.476	-0.060986	0.50863	0.012556	
Amplification Peak 15 - CN values	18q11.2 	chr18:19444890-20134873(probes 17130:17171)    	chr18:19563371-19756416(probes 17137:17148)    	chr18:19303059-20698116(probes 17123:17179)    	0.0039842	  0.0039842		Actual Copy Change Given	-0.015144	-0.025421	0.00096952	0.5374	-0.011166	0.8336	0.49901	-0.02307	0.0012222	-0.1756	-0.0017474	0.70057	-0.0037133	-0.33495	-0.0032852	-0.016568	-0.90194	0.22623	-0.019872	0.15419	2.3484	0.094466	1.1551	-0.0051343	-0.012094	-0.0014602	0.62537	-0.016482	-0.35051	0.045752	0.00097974	0.81266	0.4229	-0.024015	-0.063413	-0.057753	-0.016394	-0.0066507	-0.0057381	-0.0061167	-0.10622	-0.019257	0.18504	0.86183	0.91131	-0.27916	0.012055	-0.2046	-0.1981	0.29674	0.33117	0.00090433	-0.0145	-0.013842	-0.24802	-0.25092	0.46278	-0.010663	-0.011001	-0.015225	-0.22863	2.8596	-0.033807	-3.5123e-05	-0.010609	-0.32499	0.83429	2.0036	0.30074	-0.33155	0.72082	-0.35098	-0.14888	-0.010244	-0.033103	-0.0092568	-0.01697	-0.043446	0.010435	0.38161	-0.017955	0.097239	-0.010731	-0.028074	0.016853	-0.036112	-0.077783	0.030981	0.14633	0.058749	0.24501	-0.76176	0.0032119	0.10178	-0.0071281	-0.058845	1.1409	0.54448	4.8562	0.51055	-0.16894	0.32515	-0.09664	-0.024715	-0.0057207	6	-0.011648	
Amplification Peak 16 - CN values	19q12   	chr19:29981243-30434489(probes 18008:18023)    	chr19:30189868-30401284(probes 18014:18020)    	chr19:28641462-31646067(probes 17969:18059)    	8.9159e-10	 8.9159e-10		Actual Copy Change Given	-0.018769	-0.026457	-0.097104	0.05529	-0.049144	0.029352	0.029141	-0.026345	0.37291	0.023745	0.01126	-0.24076	-0.017728	0	-0.021783	-0.057526	-0.02702	3.5827	0.013036	6	0.19516	0.074172	0.99726	0.025593	0.0055482	-0.0030276	1.2875	-0.021886	0.73179	-0.0098059	0.3097	-0.0024382	-0.4566	0.052149	0.016741	0.015245	-0.042704	-0.024855	-0.031943	-0.0083817	0.28572	-0.045696	0.051287	-0.061426	6	0.043413	6	-0.074161	1.2457	-0.11044	-0.024214	0.0028997	0.00464	-0.043747	0.14645	0.0060302	-0.31378	-0.05809	-0.044193	0.065215	3.0885	6	-0.061071	-0.057957	-0.041167	-0.43733	0.049209	-0.04793	0.34443	0.96677	-0.28518	0.11232	0	-0.074351	-0.031376	-0.0016911	-0.0060497	0.43589	0.010662	-0.11116	-0.0072605	-0.0038487	-0.041808	0.42951	-0.5258	0.073341	0.055422	1.3115	0.1617	6	0.62878	0.06199	0.67195	0.38022	-0.023098	0.010727	-0.11534	5.9932	3.9615	6	-0.042871	-0.36561	6	-0.40044	1.3186	1.5327	0	
Amplification Peak 17 - CN values	20q13.2 	chr20:51594458-53175651(probes 18954:18983)    	chr20:51900885-52669972(probes 18958:18969)    	chr20:49909694-53869679(probes 18921:18997)    	0.00013853	 0.00013853		Actual Copy Change Given	-0.02338	-0.048854	0.44051	0.81128	0.12495	0.0043178	2.0757	0.34335	-0.05014	0.33212	0.0003072	0.16589	-0.011844	-0.16935	0.74011	-0.077924	1.7422	1.2014	-0.018079	6	0.29043	-0.023492	1.9087	0.0016898	0.0024459	0.14178	2.6689	0.6615	0.72353	0.28268	0.8464	0.20868	0.82849	-0.002427	-0.0027959	0.33157	0.47608	-0.029745	1.1675	-0.0097933	0.01854	0.31428	-0.02428	0.31333	0.43784	0.48881	-0.042651	0.049814	1.0651	0.83491	0.76841	0.6096	0.42243	-0.022224	0.95269	0.28432	2.001	0.58652	-0.035208	4.6379	0.63353	1.5475	0.58378	-0.032378	-0.028844	1.644	0.80008	0.65199	0.0036559	0.70071	0.70603	0.14613	0.041302	1.4454	0.19755	-0.095038	-0.062763	0.21982	-0.35519	0.63036	0.80261	1.8946	-0.048611	0.49461	2.9997	-0.0091721	0.060549	0.5236	1.0913	0.24968	0.45704	0.16621	0.65752	0.27049	-0.025528	-0.014251	0.46562	0.98673	6	1.3955	0.50015	0.39474	-0.037086	6	1.3333	6	0.58554	
Deletion Peak  1 - CN values	1p36.11 	chr1:26023101-28275742(probes 242:279)      	chr1:26995371-27087726(probes 259:262)      	chr1:25154630-31085048(probes 237:311)      	0.001659	   0.001659		Actual Copy Change Given	-0.48854	0.024694	0.0023848	-0.095505	0	-0.0025096	-0.50461	0.0028804	0.0021646	-0.37979	0.0076102	-0.26545	-0.74959	-0.34567	-0.0022853	-0.03376	-0.96951	-0.14477	-0.0021914	-0.78346	-0.076888	-0.0083783	-0.12626	0.0017201	0.011369	0.0061178	-0.10987	0.0068442	-0.11209	0.025753	-0.15628	-0.22137	-0.33823	0.049659	-0.050734	-0.018501	-0.026405	0.011764	0.013189	0.012691	0.0021586	0.0083692	0.011479	-0.50397	-0.016989	0.17483	0.014869	-0.24367	-0.21836	-0.24619	-0.38371	-0.0024578	0.0036283	0.02116	-0.20562	-0.25306	0.035041	-0.11039	0.011907	-0.85521	-0.40127	-0.65727	0.025371	0.0087713	0.0032416	-0.013966	-0.75146	0.0032403	0	-0.020435	-0.016219	-0.38294	0.0097202	0.49956	-0.29555	0.012223	0.0019521	0	0.0031111	-0.36102	0.012832	-0.37071	0.029517	-0.56583	0.012984	0.012184	-0.082309	0.0043802	0.10675	-0.25788	-0.013141	-0.77175	-0.034839	0.10211	0.00081914	0.003847	-0.12241	-0.37234	-0.2536	-0.34953	0	-0.34737	-0.039151	0.027093	-0.75137	-0.45807	0.0058472	
Deletion Peak  2 - CN values	2q37.2  	chr2:233474044-243199373(probes 2981:3081)	chr2:236675366-236770884(probes 3028:3029)	chr2:234746855-238191480(probes 2998:3042)	0.017589	   0.017589		Actual Copy Change Given	-0.0010318	0	0.028529	0.087875	0.011122	0.002746	-0.00039925	0.00077474	0	0.0068589	-0.0016933	0	0.019263	0.011298	0.0014558	0.022683	0.020001	0.13665	0.00035542	0.017938	-0.01805	-0.00043831	0.55891	-0.0032728	-0.0015614	-0.0020568	0.25164	-0.0037857	0.10456	-0.016475	0	0.0052269	-0.31321	0.35908	0.074863	0.014965	0	0.0023655	-0.00174	0	0	-0.0013467	-0.013597	0	-0.42546	0.493	-0.024181	-0.070503	-0.22666	-0.19406	0.0069729	-0.010296	-0.030263	0.021881	-0.016766	-0.57593	0.16193	-0.31776	0.016399	-0.0072076	-0.027355	-0.58559	0	-0.021847	-0.21766	-0.85612	-0.016728	-0.50646	0.11349	0.046705	-0.24882	0.17029	-0.011066	0.55276	-0.90785	0.01175	0.0042678	-0.013468	-0.085318	0.1206	-0.019503	-0.019983	-0.0025634	0.011394	-0.065933	0.0053989	0.0052681	0.016837	-0.2644	-0.0011054	0	-0.7956	0	0	0	-0.0026863	0.001905	-0.18267	-0.019517	-0.62904	-0.45427	0.008729	-0.56585	0.076142	-0.13498	-0.014679	0.00063893	
Deletion Peak  3 - CN values	3p14.2  	chr3:59563588-61184955(probes 3578:3606)    	chr3:61080717-61093160(probes 3590:3591)    	chr3:59563589-61509942(probes 3579:3618)    	0.00028751	 0.00028751		Actual Copy Change Given	-0.85982	-0.010968	-0.1804	0.02931	-0.008844	-0.3173	-0.013498	-0.0067589	0.29212	-0.1818	-8.0915e-05	0.19278	-0.011181	0.0017796	-0.01937	0.01203	0.0057446	-0.077986	0.61674	0.026227	-0.015419	0.41031	-0.31836	-0.0063781	0.1811	-0.013967	-0.10544	0	-0.35106	0.37482	-0.32818	0.0020342	-0.6622	-0.010428	-0.16455	-0.05861	0.034072	0.0057259	-0.039621	0.10493	-0.22615	-0.33977	-0.039417	-0.42948	-0.36712	-0.30938	-0.029529	-0.2301	0.13919	-0.24215	0.0099696	-0.0050004	-0.016595	-0.017329	-0.2492	-0.29216	-0.30464	-0.83471	0.013764	0.8228	-0.53803	0.008063	-0.25607	-0.012242	-0.016956	-0.35274	-0.033517	-0.13327	0.00089284	-0.0011956	-0.21946	0.13956	0.0083163	-0.17708	-0.27002	-0.019248	4.5092e-05	-0.044534	0.46033	-0.33904	-0.021926	-0.47116	-0.40374	-0.53587	0.057128	-0.013268	0	-0.69927	-0.095508	0.024462	-0.09844	-0.81575	-1.0374	-0.19203	0.005493	0.039661	-0.6003	-0.23254	-0.53396	-0.39909	0.13498	-0.36035	-0.052691	-0.033899	-1.4929	-0.4124	0.0041567	
Deletion Peak  4 - CN values	3p11.1  	chr3:90309030-93822733(probes 3839:3853)    	chr3:90311099-93822732(probes 3842:3852)    	chr3:90311099-93933837(probes 3842:3855)    	0.050646	   0.050646		Actual Copy Change Given	0.0097089	-0.4504	-0.072116	0.02931	-0.008844	-0.0048933	-0.013498	-0.0067589	0.0051529	-0.1818	-8.0915e-05	0.19278	-0.31307	0.0017796	0.011179	0.01203	0.0057446	0.23349	-0.0022239	0.024256	-0.015419	0.41031	-0.30204	-0.0063781	0.1811	-0.013967	-0.10544	0	0.23615	-0.047794	-0.32818	0.0020342	-0.32027	-0.010428	0.036761	0.16608	0.034072	0.0057259	0.003846	0.31689	-0.21667	0.018636	0.011046	-0.42948	-0.73544	-0.26894	-0.65376	0.09663	-0.15442	-0.39771	0.0099696	-0.0050004	-0.016595	-0.66969	-0.2492	0.0029173	-0.18615	0.015882	0.013764	0.95768	0.67306	0.008063	-0.25607	-0.67452	-0.31838	-0.35274	-0.034399	-0.5838	0.00089284	-0.0011956	0.20338	0.13956	0.0083163	0.027129	0.0518	-0.019248	4.5092e-05	-0.044534	-4.3266e-06	0.17	-0.021926	0.2284	0.017469	-0.11353	0.057128	-0.013268	0	-0.025473	-0.12602	-0.75151	-0.09844	-0.10054	0.055933	-0.19203	0.005493	0.039661	0.10407	0.26367	-0.11006	-0.39909	0.13498	0.027785	-0.041009	-0.033899	0.013539	-0.46252	0.0041567	
Deletion Peak  5 - CN values	4q22.1  	chr4:91690999-91950491(probes 4928:4955)    	chr4:91779906-91809584(probes 4941:4944)    	chr4:91690998-92356859(probes 4927:4985)    	0.0065341	   0.018497		Actual Copy Change Given	0.028214	0.026602	-0.24309	-0.032536	-0.0035608	-0.003186	-0.5151	-0.0063655	0.0059973	-0.015804	-0.0056278	-0.27368	0	-0.31231	0.0033373	0.0194	-0.87442	-0.078439	-0.012668	-0.50272	-0.4099	-0.013045	-0.29227	-0.008136	-0.0038228	-0.0026765	0	0.01776	-0.093716	-0.084637	-0.33836	0.012269	-0.59989	-0.0080284	-0.088758	0.027057	0.036537	0.027371	-1.136	-0.26	-0.20215	0.048233	0.0097332	-0.25171	-0.10283	-0.018266	-0.39305	0.27688	-0.44766	-0.21529	-0.55435	0.0056317	-0.0089391	0.023283	-0.28088	-0.24416	-0.39808	0.020422	0.026748	-0.018533	-0.23918	-0.58299	-0.22595	0.029737	0.023388	-0.29431	-1.5	-0.012172	-0.40747	-0.29913	-0.2342	-0.30994	-0.055129	0	0.022873	-0.62015	-0.011381	0.19505	-0.013149	-0.75594	0.0053823	-0.88119	0.026563	-0.56555	-0.28512	-0.0045238	-0.082918	-0.015535	-0.3741	-0.18094	-0.25431	-0.2817	-0.056172	-0.19077	0.019066	-0.015351	0.17266	-0.42568	-0.5543	-0.5795	-0.72066	0.016601	-0.47032	-0.38455	0.0071541	-0.34267	-0.0047803	
Deletion Peak  6 - CN values	4q34.3  	chr4:170615980-191154276(probes 5360:5465)	chr4:182304566-182642076(probes 5423:5427)	chr4:170788183-191154276(probes 5361:5465)	0.00037796	  0.0010767		Actual Copy Change Given	0.028214	0.026602	-0.25779	-0.032536	-0.0035608	-0.003186	-0.52111	-0.0063655	0.0059973	-0.015804	-0.0056278	-0.29359	0	0.0082559	-0.018719	0.016059	-0.92633	-0.10433	-0.012668	-1.1917	-0.17028	-0.013045	-0.2925	-0.008136	-0.052687	-0.0026765	0	-0.013918	-0.61649	-0.084637	-0.33836	0.012269	-0.35585	-0.0080284	-0.088758	0.027057	0.036537	0.027371	-0.010074	-0.29516	-0.20215	-0.19625	0.0097332	-0.34814	-0.093806	0.0043457	-0.41271	-0.16409	-0.44766	-0.21529	-0.005209	-0.59941	-0.032662	0.023283	-0.99209	-0.81254	-0.59459	-0.019768	0.026748	0.14989	-0.46703	-0.60986	-0.22595	0.029737	-0.69136	-0.62415	-0.024394	-0.012172	-0.40601	-0.66241	-0.2342	-0.12346	-0.055129	-0.07463	-0.41647	0.13866	-0.011381	0.19505	-0.013149	-0.0096371	0.0053823	-0.25035	-0.40006	-0.070447	-0.062247	-0.014921	-0.082918	-0.015535	-0.41082	0	-0.35518	0.021421	-0.066287	-0.19077	0.019066	-0.015351	-0.62084	-0.55197	-0.66955	-0.61188	-0.72066	-0.35717	-0.082359	-0.38455	-0.79553	-0.34267	-0.0047803	
Deletion Peak  7 - CN values	5q12.1  	chr5:59050959-59380706(probes 5773:5792)    	chr5:59260455-59314804(probes 5786:5789)    	chr5:57208662-70843315(probes 5732:5873)    	1.8769e-07	 1.8769e-07		Actual Copy Change Given	0.0092605	0.015868	-0.25522	0.023161	-0.00077686	-0.0026963	0.51588	0	0.0099835	0	-0.0034487	-0.29034	0.010399	0.0069719	0	-0.64362	0.033137	-0.030003	2.1147e-05	-0.79617	-0.45356	-0.010467	-0.024903	-0.0078491	-0.003159	-0.0029607	-0.10323	-0.0047033	0.13143	0	-0.33911	0.0001112	-1.0384	-0.0082273	-0.031985	0	0.030236	0.0086996	0.0069387	0.0082719	0.0089101	0.041114	-0.017497	-0.0024614	-0.28362	-0.28928	-0.39461	0.038926	-0.018195	-0.037947	0.0088581	-0.59101	-0.0012546	0.0070186	-0.57991	0.024809	-0.58363	-1.2409	0.0084034	0.0080791	-0.19052	-0.61379	-0.28339	0.011992	0.026437	-0.82262	0.0092432	-0.013102	-0.02366	-0.31452	-0.035324	-0.33183	-0.080999	-0.52301	0.014395	-0.001683	0.0056188	-0.040304	-0.00313	0	-0.0046384	-0.020245	0.010761	0.34031	-0.34846	-0.0051641	-0.097888	-0.026087	-1.0769	-0.66426	0.011025	0.13883	-0.32083	-0.14124	0.0048659	-0.0039974	-0.5635	-1.1545	-0.55264	-0.55825	-0.74556	-0.33732	0.050309	-0.41795	-1.419	-0.48343	-0.0020864	
Deletion Peak  8 - CN values	6p25.3  	chr6:1867395-2191114(probes 6415:6428)        	chr6:2066280-2115883(probes 6420:6421)        	chr6:1-3349392(probes 6398:6454)                	2.3392e-05	 2.3392e-05		Actual Copy Change Given	-0.46211	0.015418	0.20723	0.28102	-0.0038721	-0.0026702	0.0024259	0.0054323	0.01564	0.1245	0.0021885	0.18837	0.62643	0.0093517	0.0079964	0.013245	-0.90884	-0.65436	-0.6236	-1.182	0.10673	0.40343	-0.54387	-0.0032155	0.0056623	0.0058525	0.24586	0.00092935	-0.34948	-0.11025	-0.31917	-0.016374	0.42231	0.00052995	-0.037673	-0.025806	0.00059611	0.013116	-0.016003	0.0067266	0.019958	-0.020037	-0.054577	0.15705	-0.372	0.0019488	-0.44807	0.066511	0.29713	0	0.0090599	-0.0047127	-0.0065979	0.005032	0.15821	-0.32199	0.081175	-0.61402	0.0091963	0.022229	-0.17875	-0.052268	-0.47412	0.0024331	-0.0013147	0.13074	-0.0077982	-0.00728	-0.0089537	0.19328	0.011024	-0.10473	0.044022	0.027532	-0.20169	0.0038199	-3.9013e-05	-0.039233	0	-0.13761	0.0027651	-0.37665	0	-0.03704	-0.51482	0.01137	-0.049492	0.0080485	-0.20344	-0.27887	-0.32163	-0.77155	-0.41202	-0.22245	-0.0024918	0.00411	-0.67931	0.16841	0.21205	-0.65898	-0.81075	0	0.38879	0.24842	-1.381	0.46826	0.015364	
Deletion Peak  9 - CN values	7q36.1  	chr7:129240874-159138663(probes 8592:8768)	chr7:148491709-151879277(probes 8688:8706)	chr7:139904503-159138663(probes 8663:8768)	0.014174	   0.014174		Actual Copy Change Given	0	0.64294	0.016389	0.053273	0.14715	0.0045403	0.49176	-0.004014	-0.0086341	-0.16308	-0.013199	0.20422	-0.058383	-0.0036097	0.020864	0.0052989	0.035535	0.32769	0.0045061	0.0050254	0.073802	0.40542	-0.3931	0.29101	0.0086886	-0.0052788	-0.15051	-0.026036	0.095634	0.015299	-0.36506	-0.21447	0.38645	0.34118	0.24804	0.11194	0.059543	0.0046484	1.1387	-0.0025679	0.016407	0.0076662	0.0028102	-0.028881	0.035396	0.78772	-0.43722	-0.113	0.35589	0.1854	-0.39619	0.61429	0.40382	-0.0013227	0.59029	-0.293	0.84483	0.17967	-0.0052976	0.030527	0.0012402	-0.6543	-0.28135	0.011664	0.0035833	-0.82878	0.72926	-0.51173	0.33623	-0.34629	0.21519	-0.33144	-0.014958	0.54728	0	0	0.005776	0.030458	-0.0060768	-0.10116	0.81271	1.2398	0.01124	-0.018138	-0.01146	0.49853	-0.099294	0.036095	0.25847	0.083672	0.37575	-0.75279	0.29884	0.10668	0.0023634	0.01724	-0.64671	-0.61126	0.24724	0.54776	-0.16907	-0.24866	-0.54702	-0.40578	-0.079064	0.011266	0.62306	
Deletion Peak 10 - CN values	9p23    	chr9:9455034-9627050(probes 10005:10012)      	chr9:9504994-9520129(probes 10010:10011)      	chr9:9067453-10058891(probes 9986:10045)     	5.7062e-09	 5.7062e-09		Actual Copy Change Given	-0.0084945	-0.01263	-0.62153	-0.022306	-0.0075383	-0.40516	-1.0115	0.0030609	-0.56191	-0.18393	0.0013004	-0.27448	1.6992	-0.014791	-0.0018128	0.64842	0.027415	0.76502	0.00058802	-0.041097	-0.35677	-0.010181	-0.65426	-0.0020632	-0.0021211	-0.37296	-0.83109	0.0014627	-0.15451	-0.16544	-0.69375	-0.22936	0.051502	-0.45832	-0.062544	-0.039135	0.029163	-0.009691	-0.02489	-0.0066635	0.0050533	0	0.093805	-0.47861	-0.30889	0.22985	-0.00025318	-0.21402	0	-0.025983	-0.3934	0.58773	-0.0058026	-0.012196	0.32768	-0.82448	-0.597	-0.029261	-0.038087	-0.87014	-0.9273	-0.60946	-0.23884	-0.014633	-0.67515	-0.8427	-0.05455	-0.51561	-0.013427	-0.032765	-0.27346	0.17277	-0.018287	-0.57094	-0.39009	-0.013357	-0.010971	-0.030092	-0.94061	-0.87469	-0.81883	-0.02387	0.0073997	-0.58993	-0.42777	-0.00023419	-0.27644	-0.49532	-0.40443	0.068936	-0.034157	-1.5	-0.7013	-0.4871	-0.011259	-0.0072407	-0.58428	-0.83304	-0.27424	0.54587	-0.17813	-0.33825	0.51362	-0.71866	1.4606	0.41697	-0.0027104	
Deletion Peak 11 - CN values	9p21.3  	chr9:21852135-21983214(probes 10137:10144)  	chr9:21864827-21973073(probes 10138:10143)  	chr9:20946198-23494217(probes 10114:10161)  	6.3569e-07	 6.3569e-07		Actual Copy Change Given	-0.0084945	-0.01263	-0.2818	-0.022306	-0.0075383	0.002078	-0.51642	0.0030609	-0.013367	-0.18393	0.0013004	-0.27448	0.0024191	-0.014791	-0.0018128	0.64842	0.027415	-0.091059	0.00054331	-0.16347	-0.35677	-0.010181	-0.65426	-0.0020632	-0.0021211	-0.0045499	-0.42133	0.0014627	-0.15451	-0.16544	-0.34443	-0.22936	0.051502	-0.029225	-0.062544	-0.039135	0.46541	-0.009691	-0.02489	-0.0066635	-0.412	0	-0.33984	-0.46624	-0.30889	0.22985	0.054588	-0.21402	0	-0.025983	-0.40717	-1.187	-0.0058026	-0.012196	0.32768	-0.027331	-1.2745	-1.2491	-0.012149	-0.86966	-0.57905	-0.60946	-0.23884	-0.014633	-0.0080697	-0.8427	-0.0028512	-1.0006	-0.013427	-0.032765	-0.27346	-0.8677	-0.018287	-0.57094	-0.39009	-1.2809	-0.010971	-0.030092	-0.048307	-0.1088	0	-0.02387	0.0073997	-0.58993	-0.42777	-0.00023419	-0.27644	-0.0038674	-0.40443	-0.17708	0.051324	-0.9371	-1.3536	-0.4871	-0.011259	-0.0072407	-0.58428	-0.83304	-0.27424	0.54587	-1.5	-0.33825	0.49233	-0.28013	1.4606	0.41697	-0.0027367	
Deletion Peak 12 - CN values	10q23.31	chr10:88849958-89802725(probes 11338:11359)	chr10:89547681-89744114(probes 11345:11353)	chr10:89363860-89814370(probes 11339:11361)	0.011777	   0.011777		Actual Copy Change Given	-0.0089105	-0.664	-0.275	-0.097063	0.033227	0	-1.0316	-0.0015445	-0.011629	0.16977	-0.0024706	-0.26929	0.0057991	-0.003942	-0.0040208	-0.02034	0	-0.088452	0	-0.38258	-0.16702	0.40591	-0.16366	0.0003706	-0.00096398	0.0036904	-0.017128	-1.3492	0.19902	-0.1808	0.23735	0.21158	-0.05115	-0.010082	0.01556	-0.20519	-0.30458	-0.015502	-0.0090419	-0.01149	0.0095528	-0.012858	-0.026139	-0.2747	0	0.34442	-0.45228	0.073998	0.13337	0.098638	0.000836	-0.74831	0.0022562	-0.0096834	-0.41007	0.068736	-0.30512	-0.58945	-0.027337	-1.5	-0.47194	-0.026865	-0.31177	-0.019796	-0.015241	-0.81746	-0.014603	-0.0051859	-0.0135	0.33183	0.035524	0.16101	-0.14642	-0.57715	-0.037714	0.00056393	-0.00074595	-0.039182	0.0079788	0.069309	-0.014071	-0.031927	-0.025266	-0.37591	-0.1689	0	-0.069391	-0.53291	0	-0.2039	-0.12692	0.48463	-0.007932	-0.22649	0.043399	-0.013143	0.043692	0.038773	-0.55055	-0.63745	-0.31867	-0.32609	0.0053967	-0.008359	-0.01612	-0.03027	-0.0029504	
Deletion Peak 13 - CN values	11p15.5 	chr11:1-27836474(probes 11765:11952)         	chr11:2463574-3136982(probes 11798:11809)    	chr11:2463574-3555006(probes 11798:11812)    	0.22053	    0.22053		Actual Copy Change Given	0.013296	0.013809	-0.25765	-0.14032	0.017547	-0.0029576	-0.50864	0.00059248	-0.0032036	-0.38034	-0.0005017	0.18888	-0.083914	-0.33759	0.011123	-0.0038796	-0.90816	-0.11678	-0.0092653	-0.79076	-0.38601	0.40287	0.38787	-0.0057992	-0.0032583	-0.26716	0.22006	0.66104	0.434	-0.020428	0.027416	-0.21881	0.0039471	-0.0027471	-0.024692	0.012121	0.0081301	-0.0013537	-0.0045933	-0.0046812	-0.0012705	0.02003	-0.019782	-0.45239	-0.31849	-0.035633	-0.41812	0.049162	-0.45444	0.30711	0.0011574	-0.62312	0	0.0099878	0.01249	-0.26555	-0.01078	-0.15723	0.013555	-0.88776	-0.36181	-0.61817	0.0034269	0.015828	-0.016174	-0.16255	-0.0052949	0	-0.01127	0	-0.080703	0.13895	-0.1074	-0.053867	0.01353	0.04745	-0.0069043	0.19271	-0.0043629	-0.39052	-0.003551	-0.038772	0.026125	-0.56386	-0.18643	-0.0072716	0.078284	-0.040372	-0.17819	-0.1464	0.075032	-0.7286	-0.69036	-0.19799	0.0073068	0	-0.14813	0.10517	-0.29766	-0.20524	-0.43231	0.30264	0	-0.04032	-0.020103	-0.48573	-0.0055118	
Deletion Peak 14 - CN values	16q23.1 	chr16:78583111-78648685(probes 16134:16149)	chr16:78587298-78594832(probes 16137:16138)	chr16:78477442-79008568(probes 16105:16168)	3.9135e-08	 3.9135e-08		Actual Copy Change Given	-0.07121	-0.75575	-0.26106	-0.50736	-0.026871	0.010231	-0.52322	-0.0093531	-0.61433	-0.17254	-0.003087	0.18333	-0.0068139	-0.34246	-1.1275	-0.055884	-0.94637	-0.14684	-0.00028849	-0.77712	-0.18686	0.42721	0.024309	0.0075165	-0.0070314	0.0019846	0.22202	-0.014985	-0.36489	-0.041358	-0.99999	-0.23439	-0.39272	-0.013941	-0.30498	-0.33833	-0.055997	-0.046596	-0.023522	-0.029677	0.0025024	-0.03016	-0.056829	-0.033317	-1.1656	0.20424	-0.48009	-0.26405	0.018509	0.05021	-0.01194	-0.0037439	-0.45585	-0.053904	-0.31482	-0.73176	0	-0.18588	-0.29778	0.051776	-0.3241	-0.63215	-0.32428	0.17077	-0.037767	0.041643	-0.75809	-0.48899	-0.011252	-0.35523	-0.27431	-0.40517	0.0040067	-0.11909	0.28417	0.0012512	0.0015313	0.18848	-0.48626	-1.2099	-0.02138	-0.79314	-0.031868	0.12124	-0.13518	-0.012578	-0.1587	-1.271	0.029944	-0.27689	-0.096869	-0.032788	-0.073946	0.24338	-0.032374	-0.018388	-0.80614	-0.3196	-0.21998	0.0048812	-0.028084	-0.35621	-0.59095	-0.08748	-0.10041	0	-0.0096103	
Deletion Peak 15 - CN values	17p11.2 	chr17:8529294-25479095(probes 16287:16360)  	chr17:19916064-25336340(probes 16343:16359)	chr17:19916064-25486304(probes 16343:16362)	0.24847	    0.24847		Actual Copy Change Given	-0.016429	-0.73225	-0.21906	-0.0071687	-0.029879	0.022707	0.017248	-0.0031185	-0.010246	0.0034293	0.016992	-0.2565	0.039241	-0.00031003	-0.01235	-0.06041	-0.34164	-0.10337	0.0031301	-0.016591	-0.15554	0	0.16121	0.0079738	0.0047209	0.0035575	0.54598	0.001958	-0.37165	-0.22705	-0.77659	0.0052968	-0.25164	0.0042679	0.024499	-0.044939	-0.076303	-0.017495	0.0041651	0.011509	-0.22883	-0.03343	0.027506	-0.45226	-0.32647	0.057319	-0.0067616	0.0326	-0.27834	-0.27818	0.18219	-0.67652	0.003494	-0.0088321	-0.44301	-0.043942	-0.29798	-0.036197	-0.019786	0.010608	-0.17994	-0.64504	0.27114	-0.036911	-0.02835	0.041051	-0.78196	-0.024918	-0.0050498	-0.08786	-0.30837	0.16512	-0.12374	0.033205	-0.44699	-0.0069125	-0.014539	0.1966	0.0016659	0.11204	0.0089463	-0.35387	-0.014657	-0.56537	-0.51133	0.041693	-0.079024	0.047	-0.059387	-0.26028	-0.035773	-0.35728	-0.72669	-0.56608	-0.024768	0.0085533	-0.63686	-0.67996	-0.33039	-0.4298	-0.84166	0.31834	-0.091194	-0.40057	-0.7733	0.50863	0.012556	
Deletion Peak 16 - CN values	17q24.3 	chr17:70127295-70640568(probes 16859:16882)	chr17:70477558-70521358(probes 16870:16871)	chr17:70412496-70603392(probes 16864:16880)	0.077942	   0.077942		Actual Copy Change Given	-0.016429	0.69953	0.048756	-0.0071687	-0.029879	0.014201	0.55443	-0.0031185	-0.010246	0.0034293	0.016992	-0.25174	0.76891	-0.00031003	-0.011122	-0.039272	-0.34164	0.95055	0.0031301	-0.77715	-0.15554	0	-0.36179	0.0079738	0.0047209	0.011627	0.54598	0.001958	0	0.028312	-0.35581	0.0052968	-0.2492	0.0042679	0.024499	-0.044939	-0.041999	-0.017495	0.0041651	0.011509	0.022746	-0.03343	0.027506	-0.023125	0.76436	0.043716	-0.00556	0.0326	0.056589	-0.25127	-0.0045599	0.59523	0.003494	-0.0088321	0.18214	0.36227	-0.26961	-0.73562	-0.019786	1.821	-0.12288	6	0.27114	-0.036911	-0.02835	0.195	-0.774	-0.024918	-0.42757	-0.010538	0	0.16512	0.030798	-0.036857	0.3841	0.0096684	-0.014539	0.1966	0.0016659	0.5622	0.0089463	0.0080208	-0.014657	-0.5268	0.06556	0.041693	-0.079024	0.067829	-0.059387	-0.29101	-0.035773	0.28096	-0.036165	0.043194	-0.024768	0.0085533	0.17662	-0.99092	0.31609	-0.26367	0.077675	0.31834	-0.06885	3.6867	-0.51037	0.50863	0.012556	
Deletion Peak 17 - CN values	18q21.2 	chr18:38271779-78077248(probes 17491:17674)	chr18:48510732-49746888(probes 17557:17568)	chr18:36926466-78077248(probes 17486:17674)	0.0010767	  0.0010767		Actual Copy Change Given	-0.015144	-0.71154	-0.51474	0.5374	-0.011166	0.00017811	-0.019946	-0.02307	0.0012222	-0.1756	-0.0017474	0.70057	-0.74642	-0.33495	-0.0032852	-0.016568	-0.90194	-0.27302	-0.019872	-0.53173	-0.47561	0.094466	-0.65403	-0.0051343	-0.012094	-0.0014602	-0.12155	-0.016482	-0.35051	-0.16824	-0.36151	-0.22647	0.013922	-0.024015	-0.063413	-0.057753	-0.016394	-0.0066507	-0.034712	-0.0061167	-0.10622	-0.019257	0.1226	-0.49776	-0.48259	-0.27916	-0.42774	-0.2046	-0.1981	0.3834	-0.39762	-0.60251	-0.0145	-0.013842	-0.24802	-0.27881	-0.60988	0.045042	-0.011001	-0.015225	-0.26376	0.65615	-0.033807	-3.5123e-05	-0.010609	-0.32499	-0.84064	-0.50336	0.30074	-0.33155	-0.26742	-0.35098	-0.14888	-1.1435	-0.31744	-0.0092568	-0.01697	-0.043446	-0.021711	-0.39681	-0.017955	0.097239	-0.010731	-0.57751	-0.23289	-0.036112	-0.078272	-0.63404	-0.025796	-0.44872	-0.30091	-0.71168	0.0032119	-0.27835	-0.0071281	-0.058845	-0.7667	-0.67091	-0.23593	0.51055	-0.76944	0.32515	-0.09664	-0.024715	-0.72818	-0.53083	-0.011648	
Deletion Peak 18 - CN values	20p12.1 	chr20:14390118-15232555(probes 18442:18481)	chr20:14664211-15165122(probes 18461:18467)	chr20:14610501-15183333(probes 18455:18477)	0.031996	   0.031996		Actual Copy Change Given	-0.02338	-0.62372	0.51104	0.50293	0.12495	0.0043178	-0.049258	0.35686	-0.05014	0.33212	0.0003072	0.16589	-0.75841	-0.16935	0.74011	-0.077924	1.7422	0.22172	-0.018079	0.77206	0.29043	-0.023492	-1.2658	0.0016898	0.0024459	0.14178	0.2119	0.6615	-0.45941	0.22522	0.8464	-0.22878	0.73931	-0.002427	0.021551	0.33157	0.47608	-0.029745	0.0077916	-0.25829	0.01854	0.014458	-0.051617	0.38205	0.40958	0.20814	-0.021188	0.061946	0.62432	0.83491	-0.40683	0.61232	0.42276	-0.022224	0.95269	-0.49761	-0.92553	-0.024627	-0.035208	0.0075163	-0.012126	0.014547	0.58378	-0.032378	0.010007	1.6407	0.80008	-0.35895	0.0036559	0.0070349	0.56702	0.14613	-0.12661	0.51279	0.19755	-0.095038	-0.062763	0.21982	-0.35519	0.097783	0.80261	0.65338	-0.048611	0.30113	-0.081421	-0.0091721	0.060549	0.50576	1.127	0.24968	-0.20717	-0.74125	-0.61825	0.27049	-0.025528	-0.014251	0.59164	0.17851	-0.41306	0.86439	-0.048393	0.013847	0.51045	-0.068885	-0.7659	-0.93354	0.59768	
Deletion Peak 19 - CN values	22q13.31	chr22:45576204-51304566(probes 19565:19597)	chr22:47025709-51304566(probes 19584:19597)	chr22:45804498-51304566(probes 19566:19597)	0.0091074	  0.0091074		Actual Copy Change Given	-0.017237	0.61953	-0.56148	-0.043577	0.11575	0.026875	-0.51428	8.8175e-05	-0.024348	-0.18559	0.0097596	-0.25695	-0.61716	0.00082056	-0.015549	-0.087245	-0.37246	0.32559	0.012832	-0.22982	-0.29396	-0.00031289	-0.080095	0.0086933	0.0043896	0.0078247	0.20311	-0.019551	-0.35472	-0.012501	-0.75949	-0.21318	-0.22352	0.00052065	0.0028077	-0.089787	-0.062711	-0.036055	-0.010127	0.004309	-0.005789	-0.036001	0.0065581	-0.44372	-0.31333	0.011818	-0.0022717	-0.034379	-0.50828	-0.050681	-0.4375	-0.01504	0.0007358	-0.027948	0.1769	-0.82924	-0.13055	-0.33661	-0.039061	0.8733	-0.19019	-0.68905	-0.048889	-0.042804	-0.040112	-0.39101	0.028038	-0.02458	-0.0038602	0.39005	-0.29517	-0.13297	-0.0080125	-0.13563	-0.045477	-0.0028403	-0.013403	-0.060928	0.013953	-0.36681	0.0024021	0.015161	-0.020401	0.11947	-0.46964	0.02587	-0.059976	0.023177	-0.41577	-0.2879	-0.087849	-0.76088	0.13541	0.097998	-0.032484	-0.081314	-0.65361	-0.97113	-0.20046	-0.67192	0.23871	-0.35834	-0.071345	-0.4032	-0.79711	-0.46257	-0.0068817	
