[1] "ofn"        "-oTSTAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/STAD-TP/22552605/STAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/STAD-TP/22533932/transformed.cor.cli.txt"

nPatients in clinical file=443, in cluster file=441, common to both=441
[1]  88 441
[1] "AMP PEAK  1(1P36.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            66                            375 
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            66                            375 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          160                           281 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          160                           281 
[1] "AMP PEAK  3(1Q42.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                          150                           291 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                          150                           291 
[1] "AMP PEAK  4(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                          164                           277 
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                          164                           277 
[1] "AMP PEAK  5(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                           130                            311 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                           130                            311 
[1] "AMP PEAK  6(5P13.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                          126                           315 
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                          126                           315 
[1] "AMP PEAK  7(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                          124                           317 
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                          124                           317 
[1] "AMP PEAK  8(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         88                         353 
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         88                         353 
[1] "AMP PEAK  9(6Q21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                         82                         359 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                         82                         359 
[1] "AMP PEAK 10(7P22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE 
                          229                           212 
  AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE 
                          229                           212 
[1] "AMP PEAK 11(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                          214                           227 
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                          214                           227 
[1] "AMP PEAK 12(7Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                          204                           237 
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                          204                           237 
[1] "AMP PEAK 13(7Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE 
                          202                           239 
  AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE 
                          202                           239 
[1] "AMP PEAK 14(8P23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE 
                          177                           264 
  AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE 
                          177                           264 
[1] "AMP PEAK 15(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                           309                            132 
  AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE 
                           309                            132 
[1] "AMP PEAK 16(9P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE 
                           65                           376 
  AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE 
                           65                           376 
[1] "AMP PEAK 17(9P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE 
                           91                           350 
  AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE 
                           91                           350 
[1] "AMP PEAK 18(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE 
                          122                           319 
  AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE 
                          122                           319 
[1] "AMP PEAK 19(10P11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE 
                            119                             322 
  AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE 
                            119                             322 
[1] "AMP PEAK 20(10Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE 
                            86                            355 
  AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE 
                            86                            355 
[1] "AMP PEAK 21(10Q26.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE 
                             88                             353 
  AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE 
                             88                             353 
[1] "AMP PEAK 22(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE 
                          88                          353 
  AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE 
                          88                          353 
[1] "AMP PEAK 23(11P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE 
                            92                            349 
  AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE 
                            92                            349 
[1] "AMP PEAK 24(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE 
                           115                            326 
  AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE 
                           115                            326 
[1] "AMP PEAK 25(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE 
                           128                            313 
  AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE 
                           128                            313 
[1] "AMP PEAK 26(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE 
                         109                          332 
  AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE 
                         109                          332 
[1] "AMP PEAK 27(13Q12.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE 
                           170                            271 
  AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE 
                           170                            271 
[1] "AMP PEAK 28(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE 
                           181                            260 
  AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE 
                           181                            260 
[1] "AMP PEAK 29(14Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(14Q21.3) MUTATED AMP PEAK 29(14Q21.3) WILD-TYPE 
                            54                            387 
  AMP PEAK 29(14Q21.3) MUTATED AMP PEAK 29(14Q21.3) WILD-TYPE 
                            54                            387 
[1] "AMP PEAK 30(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(15Q26.1) MUTATED AMP PEAK 30(15Q26.1) WILD-TYPE 
                           113                            328 
  AMP PEAK 30(15Q26.1) MUTATED AMP PEAK 30(15Q26.1) WILD-TYPE 
                           113                            328 
[1] "AMP PEAK 31(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 31(17Q12) MUTATED AMP PEAK 31(17Q12) WILD-TYPE 
                         147                          294 
  AMP PEAK 31(17Q12) MUTATED AMP PEAK 31(17Q12) WILD-TYPE 
                         147                          294 
[1] "AMP PEAK 32(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 32(18Q11.2) MUTATED AMP PEAK 32(18Q11.2) WILD-TYPE 
                           140                            301 
  AMP PEAK 32(18Q11.2) MUTATED AMP PEAK 32(18Q11.2) WILD-TYPE 
                           140                            301 
[1] "AMP PEAK 33(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE 
                         130                          311 
  AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE 
                         130                          311 
[1] "AMP PEAK 34(19Q13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE 
                            111                             330 
  AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE 
                            111                             330 
[1] "AMP PEAK 35(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE 
                           293                            148 
  AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE 
                           293                            148 
[1] "AMP PEAK 36(XQ27.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE 
                           83                           358 
  AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE 
                           83                           358 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           135                            306 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           135                            306 
[1] "DEL PEAK  2(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           93                           348 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           93                           348 
[1] "DEL PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         25                         416 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         25                         416 
[1] "DEL PEAK  4(2Q32.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                           64                           377 
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                           64                           377 
[1] "DEL PEAK  5(2Q33.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE 
                           49                           392 
  DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE 
                           49                           392 
[1] "DEL PEAK  6(2Q37.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE 
                           72                           369 
  DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE 
                           72                           369 
[1] "DEL PEAK  7(3P26.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE 
                          143                           298 
  DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE 
                          143                           298 
[1] "DEL PEAK  8(3P21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3P21.1) MUTATED DEL PEAK  8(3P21.1) WILD-TYPE 
                          153                           288 
  DEL PEAK  8(3P21.1) MUTATED DEL PEAK  8(3P21.1) WILD-TYPE 
                          153                           288 
[1] "DEL PEAK  9(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE 
                          157                           284 
  DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE 
                          157                           284 
[1] "DEL PEAK 10(3Q26.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE 
                            49                            392 
  DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE 
                            49                            392 
[1] "DEL PEAK 11(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE 
                          169                           272 
  DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE 
                          169                           272 
[1] "DEL PEAK 12(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE 
                          193                           248 
  DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE 
                          193                           248 
[1] "DEL PEAK 13(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(4Q35.1) MUTATED DEL PEAK 13(4Q35.1) WILD-TYPE 
                          204                           237 
  DEL PEAK 13(4Q35.1) MUTATED DEL PEAK 13(4Q35.1) WILD-TYPE 
                          204                           237 
[1] "DEL PEAK 14(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE 
                          170                           271 
  DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE 
                          170                           271 
[1] "DEL PEAK 15(5Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE 
                          158                           283 
  DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE 
                          158                           283 
[1] "DEL PEAK 16(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE 
                          115                           326 
  DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE 
                          115                           326 
[1] "DEL PEAK 17(6Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE 
                           89                           352 
  DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE 
                           89                           352 
[1] "DEL PEAK 18(6Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE 
                           78                           363 
  DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE 
                           78                           363 
[1] "DEL PEAK 19(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE 
                        102                         339 
  DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE 
                        102                         339 
[1] "DEL PEAK 20(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE 
                           71                           370 
  DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE 
                           71                           370 
[1] "DEL PEAK 21(7Q36.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE 
                           98                           343 
  DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE 
                           98                           343 
[1] "DEL PEAK 22(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE 
                          122                           319 
  DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE 
                          122                           319 
[1] "DEL PEAK 23(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE 
                        195                         246 
  DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE 
                        195                         246 
[1] "DEL PEAK 24(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE 
                          193                           248 
  DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE 
                          193                           248 
[1] "DEL PEAK 25(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE 
                           113                            328 
  DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE 
                           113                            328 
[1] "DEL PEAK 26(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE 
                            77                            364 
  DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE 
                            77                            364 
[1] "DEL PEAK 27(10Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE 
                            79                            362 
  DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE 
                            79                            362 
[1] "DEL PEAK 28(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE 
                            116                             325 
  DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE 
                            116                             325 
[1] "DEL PEAK 29(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE 
                            97                            344 
  DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE 
                            97                            344 
[1] "DEL PEAK 30(11Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE 
                            99                            342 
  DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE 
                            99                            342 
[1] "DEL PEAK 31(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE 
                            77                            364 
  DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE 
                            77                            364 
[1] "DEL PEAK 32(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE 
                          59                          382 
  DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE 
                          59                          382 
[1] "DEL PEAK 33(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE 
                             63                             378 
  DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE 
                             63                             378 
[1] "DEL PEAK 34(14Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE 
                           136                            305 
  DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE 
                           136                            305 
[1] "DEL PEAK 35(14Q32.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE 
                            133                             308 
  DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE 
                            133                             308 
[1] "DEL PEAK 36(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE 
                           120                            321 
  DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE 
                           120                            321 
[1] "DEL PEAK 37(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE 
                           122                            319 
  DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE 
                           122                            319 
[1] "DEL PEAK 38(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE 
                            98                            343 
  DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE 
                            98                            343 
[1] "DEL PEAK 39(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE 
                           182                            259 
  DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE 
                           182                            259 
[1] "DEL PEAK 40(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(17P12) MUTATED DEL PEAK 40(17P12) WILD-TYPE 
                         181                          260 
  DEL PEAK 40(17P12) MUTATED DEL PEAK 40(17P12) WILD-TYPE 
                         181                          260 
[1] "DEL PEAK 41(17Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(17Q24.3) MUTATED DEL PEAK 41(17Q24.3) WILD-TYPE 
                            76                            365 
  DEL PEAK 41(17Q24.3) MUTATED DEL PEAK 41(17Q24.3) WILD-TYPE 
                            76                            365 
[1] "DEL PEAK 42(18Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(18Q12.2) MUTATED DEL PEAK 42(18Q12.2) WILD-TYPE 
                           181                            260 
  DEL PEAK 42(18Q12.2) MUTATED DEL PEAK 42(18Q12.2) WILD-TYPE 
                           181                            260 
[1] "DEL PEAK 43(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE 
                           204                            237 
  DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE 
                           204                            237 
[1] "DEL PEAK 44(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                           162                            279 
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                           162                            279 
[1] "DEL PEAK 45(19Q13.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(19Q13.11) MUTATED DEL PEAK 45(19Q13.11) WILD-TYPE 
                             75                             366 
  DEL PEAK 45(19Q13.11) MUTATED DEL PEAK 45(19Q13.11) WILD-TYPE 
                             75                             366 
[1] "DEL PEAK 46(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE 
                            39                            402 
  DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE 
                            39                            402 
[1] "DEL PEAK 47(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE 
                           182                            259 
  DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE 
                           182                            259 
[1] "DEL PEAK 48(21Q22.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 48(21Q22.13) MUTATED DEL PEAK 48(21Q22.13) WILD-TYPE 
                            196                             245 
  DEL PEAK 48(21Q22.13) MUTATED DEL PEAK 48(21Q22.13) WILD-TYPE 
                            196                             245 
[1] "DEL PEAK 49(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE 
                            161                             280 
  DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE 
                            161                             280 
[1] "DEL PEAK 50(XP22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE 
                           85                           356 
  DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE 
                           85                           356 
[1] "DEL PEAK 51(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE 
                           76                           365 
  DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE 
                           76                           365 
[1] "DEL PEAK 52(XQ21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE 
                            57                            384 
  DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE 
                            57                            384 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 441 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 441 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P36.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.22) MUTATED       59      2      5      0
  AMP PEAK  1(1P36.22) WILD-TYPE    175    151     46      3
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           59                            175
  CLUS_2                            2                            151
  CLUS_3                            5                             46
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P36.22) MUTATED       11     16      0     25      6
  AMP PEAK  1(1P36.22) WILD-TYPE     34     94     51     75     81
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           11                             34
  CLUS_2                           16                             94
  CLUS_3                            0                             51
  CLUS_4                           25                             75
  CLUS_5                            6                             81
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P36.22) MUTATED        3     20     16     10     10
  AMP PEAK  1(1P36.22) WILD-TYPE     27     72     66     83     49
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           20                             72
  CLUS_3                           16                             66
  CLUS_4                           10                             83
  CLUS_5                           10                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.22) MUTATED       26     10     14      9
  AMP PEAK  1(1P36.22) WILD-TYPE    114     48     64     71
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           26                            114
  CLUS_2                           10                             48
  CLUS_3                           14                             64
  CLUS_4                            9                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P36.22) MUTATED       27      5     10     14      6
  AMP PEAK  1(1P36.22) WILD-TYPE     67     89     83     68     44
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           27                             67
  CLUS_2                            5                             89
  CLUS_3                           10                             83
  CLUS_4                           14                             68
  CLUS_5                            6                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.22) MUTATED       22      4     24     12
  AMP PEAK  1(1P36.22) WILD-TYPE     87     78    111     75
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           22                             87
  CLUS_2                            4                             78
  CLUS_3                           24                            111
  CLUS_4                           12                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P36.22) MUTATED       15      8      7      9      9     17
  AMP PEAK  1(1P36.22) WILD-TYPE     46     58     73    102     41     49
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           15                             46
  CLUS_2                            8                             58
  CLUS_3                            7                             73
  CLUS_4                            9                            102
  CLUS_5                            9                             41
  CLUS_6                           17                             49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.22) MUTATED       34      4     27
  AMP PEAK  1(1P36.22) WILD-TYPE    209     78     82
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           34                            209
  CLUS_2                            4                             78
  CLUS_3                           27                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.22) MUTATED       29     13      7
  AMP PEAK  1(1P36.22) WILD-TYPE    118    108     66
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           29                            118
  CLUS_2                           13                            108
  CLUS_3                            7                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P36.22) MUTATED       15      4      4     13     13
  AMP PEAK  1(1P36.22) WILD-TYPE     88     68     40     49     47
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                           15                             88
  CLUS_2                            4                             68
  CLUS_3                            4                             40
  CLUS_4                           13                             49
  CLUS_5                           13                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED      130     11     18      1
  AMP PEAK  2(1Q21.3) WILD-TYPE    104    142     33      2
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         130                           104
  CLUS_2                          11                           142
  CLUS_3                          18                            33
  CLUS_4                           1                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       23     42      5     61     12
  AMP PEAK  2(1Q21.3) WILD-TYPE     22     68     46     39     75
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          23                            22
  CLUS_2                          42                            68
  CLUS_3                           5                            46
  CLUS_4                          61                            39
  CLUS_5                          12                            75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       10     37     35     22     26
  AMP PEAK  2(1Q21.3) WILD-TYPE     20     55     47     71     33
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          10                            20
  CLUS_2                          37                            55
  CLUS_3                          35                            47
  CLUS_4                          22                            71
  CLUS_5                          26                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       65     20     27     18
  AMP PEAK  2(1Q21.3) WILD-TYPE     75     38     51     62
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          65                            75
  CLUS_2                          20                            38
  CLUS_3                          27                            51
  CLUS_4                          18                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       61     18     28     25     19
  AMP PEAK  2(1Q21.3) WILD-TYPE     33     76     65     57     31
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          61                            33
  CLUS_2                          18                            76
  CLUS_3                          28                            65
  CLUS_4                          25                            57
  CLUS_5                          19                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       43     14     61     33
  AMP PEAK  2(1Q21.3) WILD-TYPE     66     68     74     54
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          43                            66
  CLUS_2                          14                            68
  CLUS_3                          61                            74
  CLUS_4                          33                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       31     14     28     25     13     46
  AMP PEAK  2(1Q21.3) WILD-TYPE     30     52     52     86     37     20
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          31                            30
  CLUS_2                          14                            52
  CLUS_3                          28                            52
  CLUS_4                          25                            86
  CLUS_5                          13                            37
  CLUS_6                          46                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       74     19     64
  AMP PEAK  2(1Q21.3) WILD-TYPE    169     63     45
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          74                           169
  CLUS_2                          19                            63
  CLUS_3                          64                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       66     34     19
  AMP PEAK  2(1Q21.3) WILD-TYPE     81     87     54
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          66                            81
  CLUS_2                          34                            87
  CLUS_3                          19                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       32     11     10     38     28
  AMP PEAK  2(1Q21.3) WILD-TYPE     71     61     34     24     32
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          32                            71
  CLUS_2                          11                            61
  CLUS_3                          10                            34
  CLUS_4                          38                            24
  CLUS_5                          28                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q42.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.3) MUTATED      116     15     18      1
  AMP PEAK  3(1Q42.3) WILD-TYPE    118    138     33      2
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                         116                           118
  CLUS_2                          15                           138
  CLUS_3                          18                            33
  CLUS_4                           1                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.3) MUTATED       20     33      6     61     14
  AMP PEAK  3(1Q42.3) WILD-TYPE     25     77     45     39     73
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          20                            25
  CLUS_2                          33                            77
  CLUS_3                           6                            45
  CLUS_4                          61                            39
  CLUS_5                          14                            73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.3) MUTATED       10     35     34     26     18
  AMP PEAK  3(1Q42.3) WILD-TYPE     20     57     48     67     41
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          10                            20
  CLUS_2                          35                            57
  CLUS_3                          34                            48
  CLUS_4                          26                            67
  CLUS_5                          18                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.3) MUTATED       62     15     29     17
  AMP PEAK  3(1Q42.3) WILD-TYPE     78     43     49     63
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          62                            78
  CLUS_2                          15                            43
  CLUS_3                          29                            49
  CLUS_4                          17                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.3) MUTATED       57     22     27     19     15
  AMP PEAK  3(1Q42.3) WILD-TYPE     37     72     66     63     35
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          57                            37
  CLUS_2                          22                            72
  CLUS_3                          27                            66
  CLUS_4                          19                            63
  CLUS_5                          15                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.3) MUTATED       32     19     59     30
  AMP PEAK  3(1Q42.3) WILD-TYPE     77     63     76     57
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          32                            77
  CLUS_2                          19                            63
  CLUS_3                          59                            76
  CLUS_4                          30                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q42.3) MUTATED       25      9     28     30     10     46
  AMP PEAK  3(1Q42.3) WILD-TYPE     36     57     52     81     40     20
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          25                            36
  CLUS_2                           9                            57
  CLUS_3                          28                            52
  CLUS_4                          30                            81
  CLUS_5                          10                            40
  CLUS_6                          46                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.3) MUTATED       62     22     64
  AMP PEAK  3(1Q42.3) WILD-TYPE    181     60     45
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          62                           181
  CLUS_2                          22                            60
  CLUS_3                          64                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.3) MUTATED       59     35     20
  AMP PEAK  3(1Q42.3) WILD-TYPE     88     86     53
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          59                            88
  CLUS_2                          35                            86
  CLUS_3                          20                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.3) MUTATED       28     18     10     38     20
  AMP PEAK  3(1Q42.3) WILD-TYPE     75     54     34     24     40
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          28                            75
  CLUS_2                          18                            54
  CLUS_3                          10                            34
  CLUS_4                          38                            24
  CLUS_5                          20                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.2) MUTATED      121     25     16      2
  AMP PEAK  4(3Q26.2) WILD-TYPE    113    128     35      1
D4V1, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                         121                           113
  CLUS_2                          25                           128
  CLUS_3                          16                            35
  CLUS_4                           2                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q26.2) MUTATED       23     33     21     52     17
  AMP PEAK  4(3Q26.2) WILD-TYPE     22     77     30     48     70
D4V2, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          23                            22
  CLUS_2                          33                            77
  CLUS_3                          21                            30
  CLUS_4                          52                            48
  CLUS_5                          17                            70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q26.2) MUTATED       10     46     30     28     19
  AMP PEAK  4(3Q26.2) WILD-TYPE     20     46     52     65     40
D4V3, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          10                            20
  CLUS_2                          46                            46
  CLUS_3                          30                            52
  CLUS_4                          28                            65
  CLUS_5                          19                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.2) MUTATED       57     13     33     30
  AMP PEAK  4(3Q26.2) WILD-TYPE     83     45     45     50
D4V4, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          57                            83
  CLUS_2                          13                            45
  CLUS_3                          33                            45
  CLUS_4                          30                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q26.2) MUTATED       44     27     34     37     13
  AMP PEAK  4(3Q26.2) WILD-TYPE     50     67     59     45     37
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          44                            50
  CLUS_2                          27                            67
  CLUS_3                          34                            59
  CLUS_4                          37                            45
  CLUS_5                          13                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.2) MUTATED       54     20     62     19
  AMP PEAK  4(3Q26.2) WILD-TYPE     55     62     73     68
D4V6, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          54                            55
  CLUS_2                          20                            62
  CLUS_3                          62                            73
  CLUS_4                          19                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.2) MUTATED       21     23     32     33     18     35
  AMP PEAK  4(3Q26.2) WILD-TYPE     40     43     48     78     32     31
D4V7, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          21                            40
  CLUS_2                          23                            43
  CLUS_3                          32                            48
  CLUS_4                          33                            78
  CLUS_5                          18                            32
  CLUS_6                          35                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.2) MUTATED       85     23     54
  AMP PEAK  4(3Q26.2) WILD-TYPE    158     59     55
D4V8, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          85                           158
  CLUS_2                          23                            59
  CLUS_3                          54                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.2) MUTATED       63     36     24
  AMP PEAK  4(3Q26.2) WILD-TYPE     84     85     49
D4V9, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          63                            84
  CLUS_2                          36                            85
  CLUS_3                          24                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q26.2) MUTATED       36     16     11     36     24
  AMP PEAK  4(3Q26.2) WILD-TYPE     67     56     33     26     36
D4V10, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          36                            67
  CLUS_2                          16                            56
  CLUS_3                          11                            33
  CLUS_4                          36                            26
  CLUS_5                          24                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5P15.33) MUTATED      100     11     17      2
  AMP PEAK  5(5P15.33) WILD-TYPE    134    142     34      1
D5V1, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                          100                            134
  CLUS_2                           11                            142
  CLUS_3                           17                             34
  CLUS_4                            2                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5P15.33) MUTATED       13     23      8     60     13
  AMP PEAK  5(5P15.33) WILD-TYPE     32     87     43     40     74
D5V2, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           13                             32
  CLUS_2                           23                             87
  CLUS_3                            8                             43
  CLUS_4                           60                             40
  CLUS_5                           13                             74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5P15.33) MUTATED        7     28     28     14     17
  AMP PEAK  5(5P15.33) WILD-TYPE     23     64     54     79     42
D5V3, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                           28                             64
  CLUS_3                           28                             54
  CLUS_4                           14                             79
  CLUS_5                           17                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5P15.33) MUTATED       48     15     17     14
  AMP PEAK  5(5P15.33) WILD-TYPE     92     43     61     66
D5V4, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           48                             92
  CLUS_2                           15                             43
  CLUS_3                           17                             61
  CLUS_4                           14                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5P15.33) MUTATED       56     12     18     21     17
  AMP PEAK  5(5P15.33) WILD-TYPE     38     82     75     61     33
D5V5, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           56                             38
  CLUS_2                           12                             82
  CLUS_3                           18                             75
  CLUS_4                           21                             61
  CLUS_5                           17                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5P15.33) MUTATED       34     10     56     24
  AMP PEAK  5(5P15.33) WILD-TYPE     75     72     79     63
D5V6, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           34                             75
  CLUS_2                           10                             72
  CLUS_3                           56                             79
  CLUS_4                           24                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5P15.33) MUTATED       21     17     16     19     16     39
  AMP PEAK  5(5P15.33) WILD-TYPE     40     49     64     92     34     27
D5V7, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           21                             40
  CLUS_2                           17                             49
  CLUS_3                           16                             64
  CLUS_4                           19                             92
  CLUS_5                           16                             34
  CLUS_6                           39                             27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P15.33) MUTATED       58     14     56
  AMP PEAK  5(5P15.33) WILD-TYPE    185     68     53
D5V8, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           58                            185
  CLUS_2                           14                             68
  CLUS_3                           56                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P15.33) MUTATED       56     23     23
  AMP PEAK  5(5P15.33) WILD-TYPE     91     98     50
D5V9, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           56                             91
  CLUS_2                           23                             98
  CLUS_3                           23                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5P15.33) MUTATED       29      9     12     33     19
  AMP PEAK  5(5P15.33) WILD-TYPE     74     63     32     29     41
D5V10, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           29                             74
  CLUS_2                            9                             63
  CLUS_3                           12                             32
  CLUS_4                           33                             29
  CLUS_5                           19                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(5P13.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P13.1) MUTATED       94     12     18      2
  AMP PEAK  6(5P13.1) WILD-TYPE    140    141     33      1
D6V1, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          94                           140
  CLUS_2                          12                           141
  CLUS_3                          18                            33
  CLUS_4                           2                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P13.1) MUTATED       11     25      8     53     14
  AMP PEAK  6(5P13.1) WILD-TYPE     34     85     43     47     73
D6V2, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          11                            34
  CLUS_2                          25                            85
  CLUS_3                           8                            43
  CLUS_4                          53                            47
  CLUS_5                          14                            73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P13.1) MUTATED        9     23     22     20     18
  AMP PEAK  6(5P13.1) WILD-TYPE     21     69     60     73     41
D6V3, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                           9                            21
  CLUS_2                          23                            69
  CLUS_3                          22                            60
  CLUS_4                          20                            73
  CLUS_5                          18                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P13.1) MUTATED       45     12     15     20
  AMP PEAK  6(5P13.1) WILD-TYPE     95     46     63     60
D6V4, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          45                            95
  CLUS_2                          12                            46
  CLUS_3                          15                            63
  CLUS_4                          20                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P13.1) MUTATED       53     16     19     17     14
  AMP PEAK  6(5P13.1) WILD-TYPE     41     78     74     65     36
D6V5, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          53                            41
  CLUS_2                          16                            78
  CLUS_3                          19                            74
  CLUS_4                          17                            65
  CLUS_5                          14                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P13.1) MUTATED       29     13     57     20
  AMP PEAK  6(5P13.1) WILD-TYPE     80     69     78     67
D6V6, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          29                            80
  CLUS_2                          13                            69
  CLUS_3                          57                            78
  CLUS_4                          20                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P13.1) MUTATED       19     16     17     24     13     36
  AMP PEAK  6(5P13.1) WILD-TYPE     42     50     63     87     37     30
D6V7, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          19                            42
  CLUS_2                          16                            50
  CLUS_3                          17                            63
  CLUS_4                          24                            87
  CLUS_5                          13                            37
  CLUS_6                          36                            30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P13.1) MUTATED       53     17     55
  AMP PEAK  6(5P13.1) WILD-TYPE    190     65     54
D6V8, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          53                           190
  CLUS_2                          17                            65
  CLUS_3                          55                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P13.1) MUTATED       48     31     20
  AMP PEAK  6(5P13.1) WILD-TYPE     99     90     53
D6V9, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          48                            99
  CLUS_2                          31                            90
  CLUS_3                          20                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P13.1) MUTATED       32     12      9     32     14
  AMP PEAK  6(5P13.1) WILD-TYPE     71     60     35     30     46
D6V10, multiclass
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  CLUS_1                          32                            71
  CLUS_2                          12                            60
  CLUS_3                           9                            35
  CLUS_4                          32                            30
  CLUS_5                          14                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(6P21.1) MUTATED      111      5      6      2
  AMP PEAK  7(6P21.1) WILD-TYPE    123    148     45      1
D7V1, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                         111                           123
  CLUS_2                           5                           148
  CLUS_3                           6                            45
  CLUS_4                           2                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(6P21.1) MUTATED       13     28      2     59      6
  AMP PEAK  7(6P21.1) WILD-TYPE     32     82     49     41     81
D7V2, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          13                            32
  CLUS_2                          28                            82
  CLUS_3                           2                            49
  CLUS_4                          59                            41
  CLUS_5                           6                            81
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(6P21.1) MUTATED       10     36     25     17     16
  AMP PEAK  7(6P21.1) WILD-TYPE     20     56     57     76     43
D7V3, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          10                            20
  CLUS_2                          36                            56
  CLUS_3                          25                            57
  CLUS_4                          17                            76
  CLUS_5                          16                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(6P21.1) MUTATED       47     13     28     16
  AMP PEAK  7(6P21.1) WILD-TYPE     93     45     50     64
D7V4, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          47                            93
  CLUS_2                          13                            45
  CLUS_3                          28                            50
  CLUS_4                          16                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(6P21.1) MUTATED       47     14     19     19     19
  AMP PEAK  7(6P21.1) WILD-TYPE     47     80     74     63     31
D7V5, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          47                            47
  CLUS_2                          14                            80
  CLUS_3                          19                            74
  CLUS_4                          19                            63
  CLUS_5                          19                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(6P21.1) MUTATED       33     10     47     28
  AMP PEAK  7(6P21.1) WILD-TYPE     76     72     88     59
D7V6, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          33                            76
  CLUS_2                          10                            72
  CLUS_3                          47                            88
  CLUS_4                          28                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(6P21.1) MUTATED       24     15     19     13     13     38
  AMP PEAK  7(6P21.1) WILD-TYPE     37     51     61     98     37     28
D7V7, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          24                            37
  CLUS_2                          15                            51
  CLUS_3                          19                            61
  CLUS_4                          13                            98
  CLUS_5                          13                            37
  CLUS_6                          38                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6P21.1) MUTATED       58     11     53
  AMP PEAK  7(6P21.1) WILD-TYPE    185     71     56
D7V8, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          58                           185
  CLUS_2                          11                            71
  CLUS_3                          53                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6P21.1) MUTATED       56     25     17
  AMP PEAK  7(6P21.1) WILD-TYPE     91     96     56
D7V9, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          56                            91
  CLUS_2                          25                            96
  CLUS_3                          17                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(6P21.1) MUTATED       25      8     11     34     20
  AMP PEAK  7(6P21.1) WILD-TYPE     78     64     33     28     40
D7V10, multiclass
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  CLUS_1                          25                            78
  CLUS_2                           8                            64
  CLUS_3                          11                            33
  CLUS_4                          34                            28
  CLUS_5                          20                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6Q12) MUTATED       78      6      4      0
  AMP PEAK  8(6Q12) WILD-TYPE    156    147     47      3
D8V1, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        78                         156
  CLUS_2                         6                         147
  CLUS_3                         4                          47
  CLUS_4                         0                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6Q12) MUTATED        8     17      1     44      4
  AMP PEAK  8(6Q12) WILD-TYPE     37     93     50     56     83
D8V2, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                         8                          37
  CLUS_2                        17                          93
  CLUS_3                         1                          50
  CLUS_4                        44                          56
  CLUS_5                         4                          83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6Q12) MUTATED        5     25     20     11     10
  AMP PEAK  8(6Q12) WILD-TYPE     25     67     62     82     49
D8V3, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                         5                          25
  CLUS_2                        25                          67
  CLUS_3                        20                          62
  CLUS_4                        11                          82
  CLUS_5                        10                          49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6Q12) MUTATED       33     10     15     13
  AMP PEAK  8(6Q12) WILD-TYPE    107     48     63     67
D8V4, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        33                         107
  CLUS_2                        10                          48
  CLUS_3                        15                          63
  CLUS_4                        13                          67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6Q12) MUTATED       40      9     11     12     13
  AMP PEAK  8(6Q12) WILD-TYPE     54     85     82     70     37
D8V5, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        40                          54
  CLUS_2                         9                          85
  CLUS_3                        11                          82
  CLUS_4                        12                          70
  CLUS_5                        13                          37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6Q12) MUTATED       19      8     39     19
  AMP PEAK  8(6Q12) WILD-TYPE     90     74     96     68
D8V6, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        19                          90
  CLUS_2                         8                          74
  CLUS_3                        39                          96
  CLUS_4                        19                          68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6Q12) MUTATED       16     11     10     13      5     31
  AMP PEAK  8(6Q12) WILD-TYPE     45     55     70     98     45     35
D8V7, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        16                          45
  CLUS_2                        11                          55
  CLUS_3                        10                          70
  CLUS_4                        13                          98
  CLUS_5                         5                          45
  CLUS_6                        31                          35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6Q12) MUTATED       39      9     38
  AMP PEAK  8(6Q12) WILD-TYPE    204     73     71
D8V8, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        39                         204
  CLUS_2                         9                          73
  CLUS_3                        38                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6Q12) MUTATED       36     19     10
  AMP PEAK  8(6Q12) WILD-TYPE    111    102     63
D8V9, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        36                         111
  CLUS_2                        19                         102
  CLUS_3                        10                          63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6Q12) MUTATED       15      7      5     25     13
  AMP PEAK  8(6Q12) WILD-TYPE     88     65     39     37     47
D8V10, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        15                          88
  CLUS_2                         7                          65
  CLUS_3                         5                          39
  CLUS_4                        25                          37
  CLUS_5                        13                          47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6Q21) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q21) MUTATED       75      4      3      0
  AMP PEAK  9(6Q21) WILD-TYPE    159    149     48      3
D9V1, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        75                         159
  CLUS_2                         4                         149
  CLUS_3                         3                          48
  CLUS_4                         0                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED        7     17      1     38      6
  AMP PEAK  9(6Q21) WILD-TYPE     38     93     50     62     81
D9V2, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         7                          38
  CLUS_2                        17                          93
  CLUS_3                         1                          50
  CLUS_4                        38                          62
  CLUS_5                         6                          81
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED        6     24     14     15     10
  AMP PEAK  9(6Q21) WILD-TYPE     24     68     68     78     49
D9V3, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         6                          24
  CLUS_2                        24                          68
  CLUS_3                        14                          68
  CLUS_4                        15                          78
  CLUS_5                        10                          49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q21) MUTATED       28      8     19     14
  AMP PEAK  9(6Q21) WILD-TYPE    112     50     59     66
D9V4, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        28                         112
  CLUS_2                         8                          50
  CLUS_3                        19                          59
  CLUS_4                        14                          66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED       39      9     12      7     11
  AMP PEAK  9(6Q21) WILD-TYPE     55     85     81     75     39
D9V5, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        39                          55
  CLUS_2                         9                          85
  CLUS_3                        12                          81
  CLUS_4                         7                          75
  CLUS_5                        11                          39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q21) MUTATED       12      8     42     16
  AMP PEAK  9(6Q21) WILD-TYPE     97     74     93     71
D9V6, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        12                          97
  CLUS_2                         8                          74
  CLUS_3                        42                          93
  CLUS_4                        16                          71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q21) MUTATED       13     12     12     12      4     28
  AMP PEAK  9(6Q21) WILD-TYPE     48     54     68     99     46     38
D9V7, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        13                          48
  CLUS_2                        12                          54
  CLUS_3                        12                          68
  CLUS_4                        12                          99
  CLUS_5                         4                          46
  CLUS_6                        28                          38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       36      6     39
  AMP PEAK  9(6Q21) WILD-TYPE    207     76     70
D9V8, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        36                         207
  CLUS_2                         6                          76
  CLUS_3                        39                          70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       33     18     10
  AMP PEAK  9(6Q21) WILD-TYPE    114    103     63
D9V9, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        33                         114
  CLUS_2                        18                         103
  CLUS_3                        10                          63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED       13      5      4     24     15
  AMP PEAK  9(6Q21) WILD-TYPE     90     67     40     38     45
D9V10, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        13                          90
  CLUS_2                         5                          67
  CLUS_3                         4                          40
  CLUS_4                        24                          38
  CLUS_5                        15                          45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(7P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED      148     32     47      2
  AMP PEAK 10(7P22.1) WILD-TYPE     86    121      4      1
D10V1, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                         148                            86
  CLUS_2                          32                           121
  CLUS_3                          47                             4
  CLUS_4                           2                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7P22.1) MUTATED       25     62     22     70     25
  AMP PEAK 10(7P22.1) WILD-TYPE     20     48     29     30     62
D10V2, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          25                            20
  CLUS_2                          62                            48
  CLUS_3                          22                            29
  CLUS_4                          70                            30
  CLUS_5                          25                            62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7P22.1) MUTATED       18     49     45     42     30
  AMP PEAK 10(7P22.1) WILD-TYPE     12     43     37     51     29
D10V3, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          18                            12
  CLUS_2                          49                            43
  CLUS_3                          45                            37
  CLUS_4                          42                            51
  CLUS_5                          30                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       81     30     38     35
  AMP PEAK 10(7P22.1) WILD-TYPE     59     28     40     45
D10V4, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          81                            59
  CLUS_2                          30                            28
  CLUS_3                          38                            40
  CLUS_4                          35                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7P22.1) MUTATED       67     36     43     35     32
  AMP PEAK 10(7P22.1) WILD-TYPE     27     58     50     47     18
D10V5, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          67                            27
  CLUS_2                          36                            58
  CLUS_3                          43                            50
  CLUS_4                          35                            47
  CLUS_5                          32                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       52     29     81     51
  AMP PEAK 10(7P22.1) WILD-TYPE     57     53     54     36
D10V6, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          52                            57
  CLUS_2                          29                            53
  CLUS_3                          81                            54
  CLUS_4                          51                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7P22.1) MUTATED       37     31     44     46     20     46
  AMP PEAK 10(7P22.1) WILD-TYPE     24     35     36     65     30     20
D10V7, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          37                            24
  CLUS_2                          31                            35
  CLUS_3                          44                            36
  CLUS_4                          46                            65
  CLUS_5                          20                            30
  CLUS_6                          46                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED      122     29     73
  AMP PEAK 10(7P22.1) WILD-TYPE    121     53     36
D10V8, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                         122                           121
  CLUS_2                          29                            53
  CLUS_3                          73                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED       87     49     38
  AMP PEAK 10(7P22.1) WILD-TYPE     60     72     35
D10V9, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          87                            60
  CLUS_2                          49                            72
  CLUS_3                          38                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7P22.1) MUTATED       55     22     22     41     34
  AMP PEAK 10(7P22.1) WILD-TYPE     48     50     22     21     26
D10V10, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          55                            48
  CLUS_2                          22                            50
  CLUS_3                          22                            22
  CLUS_4                          41                            21
  CLUS_5                          34                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7P11.2) MUTATED      131     31     50      2
  AMP PEAK 11(7P11.2) WILD-TYPE    103    122      1      1
D11V1, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                         131                           103
  CLUS_2                          31                           122
  CLUS_3                          50                             1
  CLUS_4                           2                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7P11.2) MUTATED       21     60     21     65     24
  AMP PEAK 11(7P11.2) WILD-TYPE     24     50     30     35     63
D11V2, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          21                            24
  CLUS_2                          60                            50
  CLUS_3                          21                            30
  CLUS_4                          65                            35
  CLUS_5                          24                            63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7P11.2) MUTATED       16     42     43     39     30
  AMP PEAK 11(7P11.2) WILD-TYPE     14     50     39     54     29
D11V3, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          16                            14
  CLUS_2                          42                            50
  CLUS_3                          43                            39
  CLUS_4                          39                            54
  CLUS_5                          30                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7P11.2) MUTATED       77     26     34     33
  AMP PEAK 11(7P11.2) WILD-TYPE     63     32     44     47
D11V4, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          77                            63
  CLUS_2                          26                            32
  CLUS_3                          34                            44
  CLUS_4                          33                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7P11.2) MUTATED       60     34     41     36     30
  AMP PEAK 11(7P11.2) WILD-TYPE     34     60     52     46     20
D11V5, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          60                            34
  CLUS_2                          34                            60
  CLUS_3                          41                            52
  CLUS_4                          36                            46
  CLUS_5                          30                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7P11.2) MUTATED       53     29     72     47
  AMP PEAK 11(7P11.2) WILD-TYPE     56     53     63     40
D11V6, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          53                            56
  CLUS_2                          29                            53
  CLUS_3                          72                            63
  CLUS_4                          47                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7P11.2) MUTATED       34     29     43     42     21     40
  AMP PEAK 11(7P11.2) WILD-TYPE     27     37     37     69     29     26
D11V7, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          34                            27
  CLUS_2                          29                            37
  CLUS_3                          43                            37
  CLUS_4                          42                            69
  CLUS_5                          21                            29
  CLUS_6                          40                            26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED      116     27     66
  AMP PEAK 11(7P11.2) WILD-TYPE    127     55     43
D11V8, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                         116                           127
  CLUS_2                          27                            55
  CLUS_3                          66                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED       82     45     34
  AMP PEAK 11(7P11.2) WILD-TYPE     65     76     39
D11V9, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          82                            65
  CLUS_2                          45                            76
  CLUS_3                          34                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7P11.2) MUTATED       50     21     20     36     34
  AMP PEAK 11(7P11.2) WILD-TYPE     53     51     24     26     26
D11V10, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          50                            53
  CLUS_2                          21                            51
  CLUS_3                          20                            24
  CLUS_4                          36                            26
  CLUS_5                          34                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(7Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED      122     31     50      1
  AMP PEAK 12(7Q21.2) WILD-TYPE    112    122      1      2
D12V1, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                         122                           112
  CLUS_2                          31                           122
  CLUS_3                          50                             1
  CLUS_4                           1                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(7Q21.2) MUTATED       21     50     21     63     24
  AMP PEAK 12(7Q21.2) WILD-TYPE     24     60     30     37     63
D12V2, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          21                            24
  CLUS_2                          50                            60
  CLUS_3                          21                            30
  CLUS_4                          63                            37
  CLUS_5                          24                            63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(7Q21.2) MUTATED       15     47     43     33     29
  AMP PEAK 12(7Q21.2) WILD-TYPE     15     45     39     60     30
D12V3, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          15                            15
  CLUS_2                          47                            45
  CLUS_3                          43                            39
  CLUS_4                          33                            60
  CLUS_5                          29                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED       74     26     38     29
  AMP PEAK 12(7Q21.2) WILD-TYPE     66     32     40     51
D12V4, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          74                            66
  CLUS_2                          26                            32
  CLUS_3                          38                            40
  CLUS_4                          29                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(7Q21.2) MUTATED       49     34     40     38     31
  AMP PEAK 12(7Q21.2) WILD-TYPE     45     60     53     44     19
D12V5, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          49                            45
  CLUS_2                          34                            60
  CLUS_3                          40                            53
  CLUS_4                          38                            44
  CLUS_5                          31                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(7Q21.2) MUTATED       50     27     66     49
  AMP PEAK 12(7Q21.2) WILD-TYPE     59     55     69     38
D12V6, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          50                            59
  CLUS_2                          27                            55
  CLUS_3                          66                            69
  CLUS_4                          49                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(7Q21.2) MUTATED       35     32     42     40     18     33
  AMP PEAK 12(7Q21.2) WILD-TYPE     26     34     38     71     32     33
D12V7, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          35                            26
  CLUS_2                          32                            34
  CLUS_3                          42                            38
  CLUS_4                          40                            71
  CLUS_5                          18                            32
  CLUS_6                          33                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED      115     26     59
  AMP PEAK 12(7Q21.2) WILD-TYPE    128     56     50
D12V8, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                         115                           128
  CLUS_2                          26                            56
  CLUS_3                          59                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(7Q21.2) MUTATED       75     42     35
  AMP PEAK 12(7Q21.2) WILD-TYPE     72     79     38
D12V9, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          75                            72
  CLUS_2                          42                            79
  CLUS_3                          35                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(7Q21.2) MUTATED       46     20     22     34     30
  AMP PEAK 12(7Q21.2) WILD-TYPE     57     52     22     28     30
D12V10, multiclass
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  CLUS_1                          46                            57
  CLUS_2                          20                            52
  CLUS_3                          22                            22
  CLUS_4                          34                            28
  CLUS_5                          30                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(7Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7Q22.1) MUTATED      119     31     50      2
  AMP PEAK 13(7Q22.1) WILD-TYPE    115    122      1      1
D13V1, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                         119                           115
  CLUS_2                          31                           122
  CLUS_3                          50                             1
  CLUS_4                           2                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7Q22.1) MUTATED       20     49     21     62     26
  AMP PEAK 13(7Q22.1) WILD-TYPE     25     61     30     38     61
D13V2, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          20                            25
  CLUS_2                          49                            61
  CLUS_3                          21                            30
  CLUS_4                          62                            38
  CLUS_5                          26                            61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7Q22.1) MUTATED       14     47     42     33     29
  AMP PEAK 13(7Q22.1) WILD-TYPE     16     45     40     60     30
D13V3, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          14                            16
  CLUS_2                          47                            45
  CLUS_3                          42                            40
  CLUS_4                          33                            60
  CLUS_5                          29                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7Q22.1) MUTATED       71     24     39     31
  AMP PEAK 13(7Q22.1) WILD-TYPE     69     34     39     49
D13V4, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          71                            69
  CLUS_2                          24                            34
  CLUS_3                          39                            39
  CLUS_4                          31                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7Q22.1) MUTATED       48     35     39     37     31
  AMP PEAK 13(7Q22.1) WILD-TYPE     46     59     54     45     19
D13V5, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          48                            46
  CLUS_2                          35                            59
  CLUS_3                          39                            54
  CLUS_4                          37                            45
  CLUS_5                          31                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(7Q22.1) MUTATED       51     29     64     46
  AMP PEAK 13(7Q22.1) WILD-TYPE     58     53     71     41
D13V6, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          51                            58
  CLUS_2                          29                            53
  CLUS_3                          64                            71
  CLUS_4                          46                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(7Q22.1) MUTATED       35     29     42     43     18     31
  AMP PEAK 13(7Q22.1) WILD-TYPE     26     37     38     68     32     35
D13V7, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          35                            26
  CLUS_2                          29                            37
  CLUS_3                          42                            38
  CLUS_4                          43                            68
  CLUS_5                          18                            32
  CLUS_6                          31                            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7Q22.1) MUTATED      112     28     58
  AMP PEAK 13(7Q22.1) WILD-TYPE    131     54     51
D13V8, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                         112                           131
  CLUS_2                          28                            54
  CLUS_3                          58                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(7Q22.1) MUTATED       76     44     33
  AMP PEAK 13(7Q22.1) WILD-TYPE     71     77     40
D13V9, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          76                            71
  CLUS_2                          44                            77
  CLUS_3                          33                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(7Q22.1) MUTATED       47     21     20     33     32
  AMP PEAK 13(7Q22.1) WILD-TYPE     56     51     24     29     28
D13V10, multiclass
        clus
vv       AMP PEAK 13(7Q22.1) MUTATED AMP PEAK 13(7Q22.1) WILD-TYPE
  CLUS_1                          47                            56
  CLUS_2                          21                            51
  CLUS_3                          20                            24
  CLUS_4                          33                            29
  CLUS_5                          32                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(8P23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(8P23.1) MUTATED       79     78     17      3
  AMP PEAK 14(8P23.1) WILD-TYPE    155     75     34      0
D14V1, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          79                           155
  CLUS_2                          78                            75
  CLUS_3                          17                            34
  CLUS_4                           3                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8P23.1) MUTATED       12     66     18     31     27
  AMP PEAK 14(8P23.1) WILD-TYPE     33     44     33     69     60
D14V2, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          12                            33
  CLUS_2                          66                            44
  CLUS_3                          18                            33
  CLUS_4                          31                            69
  CLUS_5                          27                            60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8P23.1) MUTATED        8     41     33     41     17
  AMP PEAK 14(8P23.1) WILD-TYPE     22     51     49     52     42
D14V3, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                           8                            22
  CLUS_2                          41                            51
  CLUS_3                          33                            49
  CLUS_4                          41                            52
  CLUS_5                          17                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(8P23.1) MUTATED       52     22     34     32
  AMP PEAK 14(8P23.1) WILD-TYPE     88     36     44     48
D14V4, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          52                            88
  CLUS_2                          22                            36
  CLUS_3                          34                            44
  CLUS_4                          32                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8P23.1) MUTATED       28     40     43     36     20
  AMP PEAK 14(8P23.1) WILD-TYPE     66     54     50     46     30
D14V5, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          28                            66
  CLUS_2                          40                            54
  CLUS_3                          43                            50
  CLUS_4                          36                            46
  CLUS_5                          20                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(8P23.1) MUTATED       51     37     40     39
  AMP PEAK 14(8P23.1) WILD-TYPE     58     45     95     48
D14V6, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          51                            58
  CLUS_2                          37                            45
  CLUS_3                          40                            95
  CLUS_4                          39                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(8P23.1) MUTATED       28     30     34     38     25     18
  AMP PEAK 14(8P23.1) WILD-TYPE     33     36     46     73     25     48
D14V7, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          28                            33
  CLUS_2                          30                            36
  CLUS_3                          34                            46
  CLUS_4                          38                            73
  CLUS_5                          25                            25
  CLUS_6                          18                            48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8P23.1) MUTATED      106     31     36
  AMP PEAK 14(8P23.1) WILD-TYPE    137     51     73
D14V8, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                         106                           137
  CLUS_2                          31                            51
  CLUS_3                          36                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8P23.1) MUTATED       59     44     30
  AMP PEAK 14(8P23.1) WILD-TYPE     88     77     43
D14V9, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          59                            88
  CLUS_2                          44                            77
  CLUS_3                          30                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8P23.1) MUTATED       39     28     16     19     31
  AMP PEAK 14(8P23.1) WILD-TYPE     64     44     28     43     29
D14V10, multiclass
        clus
vv       AMP PEAK 14(8P23.1) MUTATED AMP PEAK 14(8P23.1) WILD-TYPE
  CLUS_1                          39                            64
  CLUS_2                          28                            44
  CLUS_3                          16                            28
  CLUS_4                          19                            43
  CLUS_5                          31                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED      177     92     37      3
  AMP PEAK 15(8Q24.21) WILD-TYPE     57     61     14      0
D15V1, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                          177                             57
  CLUS_2                           92                             61
  CLUS_3                           37                             14
  CLUS_4                            3                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8Q24.21) MUTATED       25     89     23     87     48
  AMP PEAK 15(8Q24.21) WILD-TYPE     20     21     28     13     39
D15V2, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           25                             20
  CLUS_2                           89                             21
  CLUS_3                           23                             28
  CLUS_4                           87                             13
  CLUS_5                           48                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8Q24.21) MUTATED       24     66     59     59     35
  AMP PEAK 15(8Q24.21) WILD-TYPE      6     26     23     34     24
D15V3, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           24                              6
  CLUS_2                           66                             26
  CLUS_3                           59                             23
  CLUS_4                           59                             34
  CLUS_5                           35                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED       94     42     56     51
  AMP PEAK 15(8Q24.21) WILD-TYPE     46     16     22     29
D15V4, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           94                             46
  CLUS_2                           42                             16
  CLUS_3                           56                             22
  CLUS_4                           51                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8Q24.21) MUTATED       85     55     64     50     36
  AMP PEAK 15(8Q24.21) WILD-TYPE      9     39     29     32     14
D15V5, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           85                              9
  CLUS_2                           55                             39
  CLUS_3                           64                             29
  CLUS_4                           50                             32
  CLUS_5                           36                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(8Q24.21) MUTATED       78     50     99     63
  AMP PEAK 15(8Q24.21) WILD-TYPE     31     32     36     24
D15V6, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           78                             31
  CLUS_2                           50                             32
  CLUS_3                           99                             36
  CLUS_4                           63                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(8Q24.21) MUTATED       51     46     53     60     36     59
  AMP PEAK 15(8Q24.21) WILD-TYPE     10     20     27     51     14      7
D15V7, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           51                             10
  CLUS_2                           46                             20
  CLUS_3                           53                             27
  CLUS_4                           60                             51
  CLUS_5                           36                             14
  CLUS_6                           59                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED      165     48     92
  AMP PEAK 15(8Q24.21) WILD-TYPE     78     34     17
D15V8, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                          165                             78
  CLUS_2                           48                             34
  CLUS_3                           92                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(8Q24.21) MUTATED      113     72     52
  AMP PEAK 15(8Q24.21) WILD-TYPE     34     49     21
D15V9, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                          113                             34
  CLUS_2                           72                             49
  CLUS_3                           52                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(8Q24.21) MUTATED       74     37     30     53     43
  AMP PEAK 15(8Q24.21) WILD-TYPE     29     35     14      9     17
D15V10, multiclass
        clus
vv       AMP PEAK 15(8Q24.21) MUTATED AMP PEAK 15(8Q24.21) WILD-TYPE
  CLUS_1                           74                             29
  CLUS_2                           37                             35
  CLUS_3                           30                             14
  CLUS_4                           53                              9
  CLUS_5                           43                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(9P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9P24.1) MUTATED       33     24      8      0
  AMP PEAK 16(9P24.1) WILD-TYPE    201    129     43      3
D16V1, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          33                           201
  CLUS_2                          24                           129
  CLUS_3                           8                            43
  CLUS_4                           0                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(9P24.1) MUTATED        5     15     12     18      8
  AMP PEAK 16(9P24.1) WILD-TYPE     40     95     39     82     79
D16V2, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                           5                            40
  CLUS_2                          15                            95
  CLUS_3                          12                            39
  CLUS_4                          18                            82
  CLUS_5                           8                            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(9P24.1) MUTATED        4     15     14      9     11
  AMP PEAK 16(9P24.1) WILD-TYPE     26     77     68     84     48
D16V3, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                          15                            77
  CLUS_3                          14                            68
  CLUS_4                           9                            84
  CLUS_5                          11                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9P24.1) MUTATED       22      7     14     10
  AMP PEAK 16(9P24.1) WILD-TYPE    118     51     64     70
D16V4, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          22                           118
  CLUS_2                           7                            51
  CLUS_3                          14                            64
  CLUS_4                          10                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(9P24.1) MUTATED       19      7     16     13      8
  AMP PEAK 16(9P24.1) WILD-TYPE     75     87     77     69     42
D16V5, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          19                            75
  CLUS_2                           7                            87
  CLUS_3                          16                            77
  CLUS_4                          13                            69
  CLUS_5                           8                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(9P24.1) MUTATED       16      6     30     11
  AMP PEAK 16(9P24.1) WILD-TYPE     93     76    105     76
D16V6, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          16                            93
  CLUS_2                           6                            76
  CLUS_3                          30                           105
  CLUS_4                          11                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(9P24.1) MUTATED       10     11     17      8      5     13
  AMP PEAK 16(9P24.1) WILD-TYPE     51     55     63    103     45     53
D16V7, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          10                            51
  CLUS_2                          11                            55
  CLUS_3                          17                            63
  CLUS_4                           8                           103
  CLUS_5                           5                            45
  CLUS_6                          13                            53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9P24.1) MUTATED       35      9     20
  AMP PEAK 16(9P24.1) WILD-TYPE    208     73     89
D16V8, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          35                           208
  CLUS_2                           9                            73
  CLUS_3                          20                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(9P24.1) MUTATED       23      9     14
  AMP PEAK 16(9P24.1) WILD-TYPE    124    112     59
D16V9, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          23                           124
  CLUS_2                           9                           112
  CLUS_3                          14                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(9P24.1) MUTATED       15      4      6     13      8
  AMP PEAK 16(9P24.1) WILD-TYPE     88     68     38     49     52
D16V10, multiclass
        clus
vv       AMP PEAK 16(9P24.1) MUTATED AMP PEAK 16(9P24.1) WILD-TYPE
  CLUS_1                          15                            88
  CLUS_2                           4                            68
  CLUS_3                           6                            38
  CLUS_4                          13                            49
  CLUS_5                           8                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(9P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(9P13.2) MUTATED       59     21     11      0
  AMP PEAK 17(9P13.2) WILD-TYPE    175    132     40      3
D17V1, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          59                           175
  CLUS_2                          21                           132
  CLUS_3                          11                            40
  CLUS_4                           0                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(9P13.2) MUTATED       11     23      6     26     17
  AMP PEAK 17(9P13.2) WILD-TYPE     34     87     45     74     70
D17V2, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          11                            34
  CLUS_2                          23                            87
  CLUS_3                           6                            45
  CLUS_4                          26                            74
  CLUS_5                          17                            70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(9P13.2) MUTATED       10     18     17     16     12
  AMP PEAK 17(9P13.2) WILD-TYPE     20     74     65     77     47
D17V3, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          10                            20
  CLUS_2                          18                            74
  CLUS_3                          17                            65
  CLUS_4                          16                            77
  CLUS_5                          12                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(9P13.2) MUTATED       37      8     18     10
  AMP PEAK 17(9P13.2) WILD-TYPE    103     50     60     70
D17V4, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          37                           103
  CLUS_2                           8                            50
  CLUS_3                          18                            60
  CLUS_4                          10                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(9P13.2) MUTATED       25     10     19     18     14
  AMP PEAK 17(9P13.2) WILD-TYPE     69     84     74     64     36
D17V5, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          25                            69
  CLUS_2                          10                            84
  CLUS_3                          19                            74
  CLUS_4                          18                            64
  CLUS_5                          14                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(9P13.2) MUTATED       27      9     33     17
  AMP PEAK 17(9P13.2) WILD-TYPE     82     73    102     70
D17V6, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          27                            82
  CLUS_2                           9                            73
  CLUS_3                          33                           102
  CLUS_4                          17                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(9P13.2) MUTATED       16     13     18     10     12     20
  AMP PEAK 17(9P13.2) WILD-TYPE     45     53     62    101     38     46
D17V7, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          16                            45
  CLUS_2                          13                            53
  CLUS_3                          18                            62
  CLUS_4                          10                           101
  CLUS_5                          12                            38
  CLUS_6                          20                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(9P13.2) MUTATED       47     13     29
  AMP PEAK 17(9P13.2) WILD-TYPE    196     69     80
D17V8, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          47                           196
  CLUS_2                          13                            69
  CLUS_3                          29                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(9P13.2) MUTATED       37     19     15
  AMP PEAK 17(9P13.2) WILD-TYPE    110    102     58
D17V9, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          37                           110
  CLUS_2                          19                           102
  CLUS_3                          15                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(9P13.2) MUTATED       23     10      7     17     14
  AMP PEAK 17(9P13.2) WILD-TYPE     80     62     37     45     46
D17V10, multiclass
        clus
vv       AMP PEAK 17(9P13.2) MUTATED AMP PEAK 17(9P13.2) WILD-TYPE
  CLUS_1                          23                            80
  CLUS_2                          10                            62
  CLUS_3                           7                            37
  CLUS_4                          17                            45
  CLUS_5                          14                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(9Q34.3) MUTATED       78     26     17      1
  AMP PEAK 18(9Q34.3) WILD-TYPE    156    127     34      2
D18V1, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          78                           156
  CLUS_2                          26                           127
  CLUS_3                          17                            34
  CLUS_4                           1                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(9Q34.3) MUTATED       16     31      7     36     19
  AMP PEAK 18(9Q34.3) WILD-TYPE     29     79     44     64     68
D18V2, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          16                            29
  CLUS_2                          31                            79
  CLUS_3                           7                            44
  CLUS_4                          36                            64
  CLUS_5                          19                            68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(9Q34.3) MUTATED       11     27     23     24     15
  AMP PEAK 18(9Q34.3) WILD-TYPE     19     65     59     69     44
D18V3, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          11                            19
  CLUS_2                          27                            65
  CLUS_3                          23                            59
  CLUS_4                          24                            69
  CLUS_5                          15                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(9Q34.3) MUTATED       46     13     23     18
  AMP PEAK 18(9Q34.3) WILD-TYPE     94     45     55     62
D18V4, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          46                            94
  CLUS_2                          13                            45
  CLUS_3                          23                            55
  CLUS_4                          18                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(9Q34.3) MUTATED       32     14     29     20     19
  AMP PEAK 18(9Q34.3) WILD-TYPE     62     80     64     62     31
D18V5, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          32                            62
  CLUS_2                          14                            80
  CLUS_3                          29                            64
  CLUS_4                          20                            62
  CLUS_5                          19                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(9Q34.3) MUTATED       32     14     43     25
  AMP PEAK 18(9Q34.3) WILD-TYPE     77     68     92     62
D18V6, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          32                            77
  CLUS_2                          14                            68
  CLUS_3                          43                            92
  CLUS_4                          25                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(9Q34.3) MUTATED       24     12     26     22     14     22
  AMP PEAK 18(9Q34.3) WILD-TYPE     37     54     54     89     36     44
D18V7, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          24                            37
  CLUS_2                          12                            54
  CLUS_3                          26                            54
  CLUS_4                          22                            89
  CLUS_5                          14                            36
  CLUS_6                          22                            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(9Q34.3) MUTATED       68     17     35
  AMP PEAK 18(9Q34.3) WILD-TYPE    175     65     74
D18V8, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          68                           175
  CLUS_2                          17                            65
  CLUS_3                          35                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(9Q34.3) MUTATED       43     29     16
  AMP PEAK 18(9Q34.3) WILD-TYPE    104     92     57
D18V9, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          43                           104
  CLUS_2                          29                            92
  CLUS_3                          16                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(9Q34.3) MUTATED       30     15      8     18     17
  AMP PEAK 18(9Q34.3) WILD-TYPE     73     57     36     44     43
D18V10, multiclass
        clus
vv       AMP PEAK 18(9Q34.3) MUTATED AMP PEAK 18(9Q34.3) WILD-TYPE
  CLUS_1                          30                            73
  CLUS_2                          15                            57
  CLUS_3                           8                            36
  CLUS_4                          18                            44
  CLUS_5                          17                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(10P11.22) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(10P11.22) MUTATED       95      8     16      0
  AMP PEAK 19(10P11.22) WILD-TYPE    139    145     35      3
D19V1, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            95                             139
  CLUS_2                             8                             145
  CLUS_3                            16                              35
  CLUS_4                             0                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(10P11.22) MUTATED       10     29      4     50     14
  AMP PEAK 19(10P11.22) WILD-TYPE     35     81     47     50     73
D19V2, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            10                              35
  CLUS_2                            29                              81
  CLUS_3                             4                              47
  CLUS_4                            50                              50
  CLUS_5                            14                              73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(10P11.22) MUTATED        6     26     20     24     14
  AMP PEAK 19(10P11.22) WILD-TYPE     24     66     62     69     45
D19V3, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                             6                              24
  CLUS_2                            26                              66
  CLUS_3                            20                              62
  CLUS_4                            24                              69
  CLUS_5                            14                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(10P11.22) MUTATED       39      9     22     20
  AMP PEAK 19(10P11.22) WILD-TYPE    101     49     56     60
D19V4, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            39                             101
  CLUS_2                             9                              49
  CLUS_3                            22                              56
  CLUS_4                            20                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(10P11.22) MUTATED       44     16     21     19     14
  AMP PEAK 19(10P11.22) WILD-TYPE     50     78     72     63     36
D19V5, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            44                              50
  CLUS_2                            16                              78
  CLUS_3                            21                              72
  CLUS_4                            19                              63
  CLUS_5                            14                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(10P11.22) MUTATED       30     15     46     23
  AMP PEAK 19(10P11.22) WILD-TYPE     79     67     89     64
D19V6, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            30                              79
  CLUS_2                            15                              67
  CLUS_3                            46                              89
  CLUS_4                            23                              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(10P11.22) MUTATED       22     11     18     22     14     29
  AMP PEAK 19(10P11.22) WILD-TYPE     39     55     62     89     36     37
D19V7, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            22                              39
  CLUS_2                            11                              55
  CLUS_3                            18                              62
  CLUS_4                            22                              89
  CLUS_5                            14                              36
  CLUS_6                            29                              37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(10P11.22) MUTATED       50     17     49
  AMP PEAK 19(10P11.22) WILD-TYPE    193     65     60
D19V8, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            50                             193
  CLUS_2                            17                              65
  CLUS_3                            49                              60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(10P11.22) MUTATED       52     26     14
  AMP PEAK 19(10P11.22) WILD-TYPE     95     95     59
D19V9, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            52                              95
  CLUS_2                            26                              95
  CLUS_3                            14                              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(10P11.22) MUTATED       22     10      8     29     23
  AMP PEAK 19(10P11.22) WILD-TYPE     81     62     36     33     37
D19V10, multiclass
        clus
vv       AMP PEAK 19(10P11.22) MUTATED AMP PEAK 19(10P11.22) WILD-TYPE
  CLUS_1                            22                              81
  CLUS_2                            10                              62
  CLUS_3                             8                              36
  CLUS_4                            29                              33
  CLUS_5                            23                              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(10Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(10Q22.2) MUTATED       71      9      6      0
  AMP PEAK 20(10Q22.2) WILD-TYPE    163    144     45      3
D20V1, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           71                            163
  CLUS_2                            9                            144
  CLUS_3                            6                             45
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(10Q22.2) MUTATED       15     26      5     23      8
  AMP PEAK 20(10Q22.2) WILD-TYPE     30     84     46     77     79
D20V2, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           15                             30
  CLUS_2                           26                             84
  CLUS_3                            5                             46
  CLUS_4                           23                             77
  CLUS_5                            8                             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(10Q22.2) MUTATED        5     20     13     21     11
  AMP PEAK 20(10Q22.2) WILD-TYPE     25     72     69     72     48
D20V3, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                           20                             72
  CLUS_3                           13                             69
  CLUS_4                           21                             72
  CLUS_5                           11                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(10Q22.2) MUTATED       32      7     15     16
  AMP PEAK 20(10Q22.2) WILD-TYPE    108     51     63     64
D20V4, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           32                            108
  CLUS_2                            7                             51
  CLUS_3                           15                             63
  CLUS_4                           16                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(10Q22.2) MUTATED       19     15     21     21      5
  AMP PEAK 20(10Q22.2) WILD-TYPE     75     79     72     61     45
D20V5, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           19                             75
  CLUS_2                           15                             79
  CLUS_3                           21                             72
  CLUS_4                           21                             61
  CLUS_5                            5                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(10Q22.2) MUTATED       27     13     33      8
  AMP PEAK 20(10Q22.2) WILD-TYPE     82     69    102     79
D20V6, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           27                             82
  CLUS_2                           13                             69
  CLUS_3                           33                            102
  CLUS_4                            8                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(10Q22.2) MUTATED       12      9     15     17     15     15
  AMP PEAK 20(10Q22.2) WILD-TYPE     49     57     65     94     35     51
D20V7, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           12                             49
  CLUS_2                            9                             57
  CLUS_3                           15                             65
  CLUS_4                           17                             94
  CLUS_5                           15                             35
  CLUS_6                           15                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(10Q22.2) MUTATED       49     11     23
  AMP PEAK 20(10Q22.2) WILD-TYPE    194     71     86
D20V8, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           49                            194
  CLUS_2                           11                             71
  CLUS_3                           23                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(10Q22.2) MUTATED       36     20     11
  AMP PEAK 20(10Q22.2) WILD-TYPE    111    101     62
D20V9, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           36                            111
  CLUS_2                           20                            101
  CLUS_3                           11                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(10Q22.2) MUTATED       24      9      7     15     12
  AMP PEAK 20(10Q22.2) WILD-TYPE     79     63     37     47     48
D20V10, multiclass
        clus
vv       AMP PEAK 20(10Q22.2) MUTATED AMP PEAK 20(10Q22.2) WILD-TYPE
  CLUS_1                           24                             79
  CLUS_2                            9                             63
  CLUS_3                            7                             37
  CLUS_4                           15                             47
  CLUS_5                           12                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(10Q26.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(10Q26.13) MUTATED       72     11      5      0
  AMP PEAK 21(10Q26.13) WILD-TYPE    162    142     46      3
D21V1, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            72                             162
  CLUS_2                            11                             142
  CLUS_3                             5                              46
  CLUS_4                             0                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(10Q26.13) MUTATED       12     18      4     31     10
  AMP PEAK 21(10Q26.13) WILD-TYPE     33     92     47     69     77
D21V2, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            12                              33
  CLUS_2                            18                              92
  CLUS_3                             4                              47
  CLUS_4                            31                              69
  CLUS_5                            10                              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(10Q26.13) MUTATED        5     22     13     22     11
  AMP PEAK 21(10Q26.13) WILD-TYPE     25     70     69     71     48
D21V3, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                             5                              25
  CLUS_2                            22                              70
  CLUS_3                            13                              69
  CLUS_4                            22                              71
  CLUS_5                            11                              48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(10Q26.13) MUTATED       29      7     18     19
  AMP PEAK 21(10Q26.13) WILD-TYPE    111     51     60     61
D21V4, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            29                             111
  CLUS_2                             7                              51
  CLUS_3                            18                              60
  CLUS_4                            19                              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(10Q26.13) MUTATED       29     18     15     13      6
  AMP PEAK 21(10Q26.13) WILD-TYPE     65     76     78     69     44
D21V5, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            29                              65
  CLUS_2                            18                              76
  CLUS_3                            15                              78
  CLUS_4                            13                              69
  CLUS_5                             6                              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(10Q26.13) MUTATED       19     16     35     11
  AMP PEAK 21(10Q26.13) WILD-TYPE     90     66    100     76
D21V6, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            19                              90
  CLUS_2                            16                              66
  CLUS_3                            35                             100
  CLUS_4                            11                              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(10Q26.13) MUTATED       14     14      9     19     13     18
  AMP PEAK 21(10Q26.13) WILD-TYPE     47     52     71     92     37     48
D21V7, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            14                              47
  CLUS_2                            14                              52
  CLUS_3                             9                              71
  CLUS_4                            19                              92
  CLUS_5                            13                              37
  CLUS_6                            18                              48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(10Q26.13) MUTATED       42     15     30
  AMP PEAK 21(10Q26.13) WILD-TYPE    201     67     79
D21V8, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            42                             201
  CLUS_2                            15                              67
  CLUS_3                            30                              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(10Q26.13) MUTATED       35     22     13
  AMP PEAK 21(10Q26.13) WILD-TYPE    112     99     60
D21V9, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            35                             112
  CLUS_2                            22                              99
  CLUS_3                            13                              60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(10Q26.13) MUTATED       18     12      8     17     15
  AMP PEAK 21(10Q26.13) WILD-TYPE     85     60     36     45     45
D21V10, multiclass
        clus
vv       AMP PEAK 21(10Q26.13) MUTATED AMP PEAK 21(10Q26.13) WILD-TYPE
  CLUS_1                            18                              85
  CLUS_2                            12                              60
  CLUS_3                             8                              36
  CLUS_4                            17                              45
  CLUS_5                            15                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(11P13) MUTATED       69     11      8      0
  AMP PEAK 22(11P13) WILD-TYPE    165    142     43      3
D22V1, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         69                          165
  CLUS_2                         11                          142
  CLUS_3                          8                           43
  CLUS_4                          0                            3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(11P13) MUTATED       10     13      8     34     14
  AMP PEAK 22(11P13) WILD-TYPE     35     97     43     66     73
D22V2, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         10                           35
  CLUS_2                         13                           97
  CLUS_3                          8                           43
  CLUS_4                         34                           66
  CLUS_5                         14                           73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(11P13) MUTATED        4     21     16     20     10
  AMP PEAK 22(11P13) WILD-TYPE     26     71     66     73     49
D22V3, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                          4                           26
  CLUS_2                         21                           71
  CLUS_3                         16                           66
  CLUS_4                         20                           73
  CLUS_5                         10                           49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(11P13) MUTATED       33      6     18     14
  AMP PEAK 22(11P13) WILD-TYPE    107     52     60     66
D22V4, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         33                          107
  CLUS_2                          6                           52
  CLUS_3                         18                           60
  CLUS_4                         14                           66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(11P13) MUTATED       27     21     17     12      7
  AMP PEAK 22(11P13) WILD-TYPE     67     73     76     70     43
D22V5, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         27                           67
  CLUS_2                         21                           73
  CLUS_3                         17                           76
  CLUS_4                         12                           70
  CLUS_5                          7                           43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(11P13) MUTATED       20     15     37     12
  AMP PEAK 22(11P13) WILD-TYPE     89     67     98     75
D22V6, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         20                           89
  CLUS_2                         15                           67
  CLUS_3                         37                           98
  CLUS_4                         12                           75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(11P13) MUTATED       14      9     13     17      6     27
  AMP PEAK 22(11P13) WILD-TYPE     47     57     67     94     44     39
D22V7, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         14                           47
  CLUS_2                          9                           57
  CLUS_3                         13                           67
  CLUS_4                         17                           94
  CLUS_5                          6                           44
  CLUS_6                         27                           39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(11P13) MUTATED       35     12     39
  AMP PEAK 22(11P13) WILD-TYPE    208     70     70
D22V8, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         35                          208
  CLUS_2                         12                           70
  CLUS_3                         39                           70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(11P13) MUTATED       34     23     10
  AMP PEAK 22(11P13) WILD-TYPE    113     98     63
D22V9, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         34                          113
  CLUS_2                         23                           98
  CLUS_3                         10                           63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(11P13) MUTATED       16     10      6     25     10
  AMP PEAK 22(11P13) WILD-TYPE     87     62     38     37     50
D22V10, multiclass
        clus
vv       AMP PEAK 22(11P13) MUTATED AMP PEAK 22(11P13) WILD-TYPE
  CLUS_1                         16                           87
  CLUS_2                         10                           62
  CLUS_3                          6                           38
  CLUS_4                         25                           37
  CLUS_5                         10                           50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(11P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(11P11.2) MUTATED       78      7      7      0
  AMP PEAK 23(11P11.2) WILD-TYPE    156    146     44      3
D23V1, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           78                            156
  CLUS_2                            7                            146
  CLUS_3                            7                             44
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(11P11.2) MUTATED       11     15      8     38      9
  AMP PEAK 23(11P11.2) WILD-TYPE     34     95     43     62     78
D23V2, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           11                             34
  CLUS_2                           15                             95
  CLUS_3                            8                             43
  CLUS_4                           38                             62
  CLUS_5                            9                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(11P11.2) MUTATED        5     23     18     17     10
  AMP PEAK 23(11P11.2) WILD-TYPE     25     69     64     76     49
D23V3, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                           23                             69
  CLUS_3                           18                             64
  CLUS_4                           17                             76
  CLUS_5                           10                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(11P11.2) MUTATED       35      6     20     12
  AMP PEAK 23(11P11.2) WILD-TYPE    105     52     58     68
D23V4, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           35                            105
  CLUS_2                            6                             52
  CLUS_3                           20                             58
  CLUS_4                           12                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(11P11.2) MUTATED       35     14     14     14     10
  AMP PEAK 23(11P11.2) WILD-TYPE     59     80     79     68     40
D23V5, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           35                             59
  CLUS_2                           14                             80
  CLUS_3                           14                             79
  CLUS_4                           14                             68
  CLUS_5                           10                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(11P11.2) MUTATED       22      9     40     16
  AMP PEAK 23(11P11.2) WILD-TYPE     87     73     95     71
D23V6, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           22                             87
  CLUS_2                            9                             73
  CLUS_3                           40                             95
  CLUS_4                           16                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(11P11.2) MUTATED       18     10     13     12      9     27
  AMP PEAK 23(11P11.2) WILD-TYPE     43     56     67     99     41     39
D23V7, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           18                             43
  CLUS_2                           10                             56
  CLUS_3                           13                             67
  CLUS_4                           12                             99
  CLUS_5                            9                             41
  CLUS_6                           27                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(11P11.2) MUTATED       41      6     42
  AMP PEAK 23(11P11.2) WILD-TYPE    202     76     67
D23V8, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           41                            202
  CLUS_2                            6                             76
  CLUS_3                           42                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(11P11.2) MUTATED       42     18      8
  AMP PEAK 23(11P11.2) WILD-TYPE    105    103     65
D23V9, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           42                            105
  CLUS_2                           18                            103
  CLUS_3                            8                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(11P11.2) MUTATED       19      4      6     25     14
  AMP PEAK 23(11P11.2) WILD-TYPE     84     68     38     37     46
D23V10, multiclass
        clus
vv       AMP PEAK 23(11P11.2) MUTATED AMP PEAK 23(11P11.2) WILD-TYPE
  CLUS_1                           19                             84
  CLUS_2                            4                             68
  CLUS_3                            6                             38
  CLUS_4                           25                             37
  CLUS_5                           14                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(11Q13.3) MUTATED       95     11      7      2
  AMP PEAK 24(11Q13.3) WILD-TYPE    139    142     44      1
D24V1, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           95                            139
  CLUS_2                           11                            142
  CLUS_3                            7                             44
  CLUS_4                            2                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(11Q13.3) MUTATED       16     28      7     37     14
  AMP PEAK 24(11Q13.3) WILD-TYPE     29     82     44     63     73
D24V2, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           16                             29
  CLUS_2                           28                             82
  CLUS_3                            7                             44
  CLUS_4                           37                             63
  CLUS_5                           14                             73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(11Q13.3) MUTATED        3     32     23     20     12
  AMP PEAK 24(11Q13.3) WILD-TYPE     27     60     59     73     47
D24V3, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           32                             60
  CLUS_3                           23                             59
  CLUS_4                           20                             73
  CLUS_5                           12                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(11Q13.3) MUTATED       39      9     26     16
  AMP PEAK 24(11Q13.3) WILD-TYPE    101     49     52     64
D24V4, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           39                            101
  CLUS_2                            9                             49
  CLUS_3                           26                             52
  CLUS_4                           16                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(11Q13.3) MUTATED       35     13     24     24     13
  AMP PEAK 24(11Q13.3) WILD-TYPE     59     81     69     58     37
D24V5, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           35                             59
  CLUS_2                           13                             81
  CLUS_3                           24                             69
  CLUS_4                           24                             58
  CLUS_5                           13                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(11Q13.3) MUTATED       35     10     44     20
  AMP PEAK 24(11Q13.3) WILD-TYPE     74     72     91     67
D24V6, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           35                             74
  CLUS_2                           10                             72
  CLUS_3                           44                             91
  CLUS_4                           20                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(11Q13.3) MUTATED       21     11     23     16     13     28
  AMP PEAK 24(11Q13.3) WILD-TYPE     40     55     57     95     37     38
D24V7, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           21                             40
  CLUS_2                           11                             55
  CLUS_3                           23                             57
  CLUS_4                           16                             95
  CLUS_5                           13                             37
  CLUS_6                           28                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(11Q13.3) MUTATED       64      9     39
  AMP PEAK 24(11Q13.3) WILD-TYPE    179     73     70
D24V8, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           64                            179
  CLUS_2                            9                             73
  CLUS_3                           39                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(11Q13.3) MUTATED       52     26     11
  AMP PEAK 24(11Q13.3) WILD-TYPE     95     95     62
D24V9, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           52                             95
  CLUS_2                           26                             95
  CLUS_3                           11                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(11Q13.3) MUTATED       32      8      7     23     19
  AMP PEAK 24(11Q13.3) WILD-TYPE     71     64     37     39     41
D24V10, multiclass
        clus
vv       AMP PEAK 24(11Q13.3) MUTATED AMP PEAK 24(11Q13.3) WILD-TYPE
  CLUS_1                           32                             71
  CLUS_2                            8                             64
  CLUS_3                            7                             37
  CLUS_4                           23                             39
  CLUS_5                           19                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(12P12.1) MUTATED       86     19     22      1
  AMP PEAK 25(12P12.1) WILD-TYPE    148    134     29      2
D25V1, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           86                            148
  CLUS_2                           19                            134
  CLUS_3                           22                             29
  CLUS_4                            1                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(12P12.1) MUTATED       22     34     12     33     18
  AMP PEAK 25(12P12.1) WILD-TYPE     23     76     39     67     69
D25V2, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           22                             23
  CLUS_2                           34                             76
  CLUS_3                           12                             39
  CLUS_4                           33                             67
  CLUS_5                           18                             69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(12P12.1) MUTATED        9     16     26     24     20
  AMP PEAK 25(12P12.1) WILD-TYPE     21     76     56     69     39
D25V3, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                           16                             76
  CLUS_3                           26                             56
  CLUS_4                           24                             69
  CLUS_5                           20                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(12P12.1) MUTATED       43     14     15     23
  AMP PEAK 25(12P12.1) WILD-TYPE     97     44     63     57
D25V4, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           43                             97
  CLUS_2                           14                             44
  CLUS_3                           15                             63
  CLUS_4                           23                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(12P12.1) MUTATED       35     23     28     19     13
  AMP PEAK 25(12P12.1) WILD-TYPE     59     71     65     63     37
D25V5, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           35                             59
  CLUS_2                           23                             71
  CLUS_3                           28                             65
  CLUS_4                           19                             63
  CLUS_5                           13                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(12P12.1) MUTATED       29     19     49     21
  AMP PEAK 25(12P12.1) WILD-TYPE     80     63     86     66
D25V6, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           29                             80
  CLUS_2                           19                             63
  CLUS_3                           49                             86
  CLUS_4                           21                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(12P12.1) MUTATED       16     17     25     24     18     26
  AMP PEAK 25(12P12.1) WILD-TYPE     45     49     55     87     32     40
D25V7, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           16                             45
  CLUS_2                           17                             49
  CLUS_3                           25                             55
  CLUS_4                           24                             87
  CLUS_5                           18                             32
  CLUS_6                           26                             40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(12P12.1) MUTATED       68     20     38
  AMP PEAK 25(12P12.1) WILD-TYPE    175     62     71
D25V8, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           68                            175
  CLUS_2                           20                             62
  CLUS_3                           38                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(12P12.1) MUTATED       55     29     17
  AMP PEAK 25(12P12.1) WILD-TYPE     92     92     56
D25V9, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           55                             92
  CLUS_2                           29                             92
  CLUS_3                           17                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(12P12.1) MUTATED       34     12     14     24     17
  AMP PEAK 25(12P12.1) WILD-TYPE     69     60     30     38     43
D25V10, multiclass
        clus
vv       AMP PEAK 25(12P12.1) MUTATED AMP PEAK 25(12P12.1) WILD-TYPE
  CLUS_1                           34                             69
  CLUS_2                           12                             60
  CLUS_3                           14                             30
  CLUS_4                           24                             38
  CLUS_5                           17                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(12Q15) MUTATED       73     21     14      1
  AMP PEAK 26(12Q15) WILD-TYPE    161    132     37      2
D26V1, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         73                          161
  CLUS_2                         21                          132
  CLUS_3                         14                           37
  CLUS_4                          1                            2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(12Q15) MUTATED       18     21     16     29     13
  AMP PEAK 26(12Q15) WILD-TYPE     27     89     35     71     74
D26V2, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         18                           27
  CLUS_2                         21                           89
  CLUS_3                         16                           35
  CLUS_4                         29                           71
  CLUS_5                         13                           74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(12Q15) MUTATED       12     15     23     15     17
  AMP PEAK 26(12Q15) WILD-TYPE     18     77     59     78     42
D26V3, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         12                           18
  CLUS_2                         15                           77
  CLUS_3                         23                           59
  CLUS_4                         15                           78
  CLUS_5                         17                           42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(12Q15) MUTATED       40      9     17     16
  AMP PEAK 26(12Q15) WILD-TYPE    100     49     61     64
D26V4, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         40                          100
  CLUS_2                          9                           49
  CLUS_3                         17                           61
  CLUS_4                         16                           64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(12Q15) MUTATED       27     20     22     20     11
  AMP PEAK 26(12Q15) WILD-TYPE     67     74     71     62     39
D26V5, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         27                           67
  CLUS_2                         20                           74
  CLUS_3                         22                           71
  CLUS_4                         20                           62
  CLUS_5                         11                           39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(12Q15) MUTATED       26     17     40     17
  AMP PEAK 26(12Q15) WILD-TYPE     83     65     95     70
D26V6, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         26                           83
  CLUS_2                         17                           65
  CLUS_3                         40                           95
  CLUS_4                         17                           70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(12Q15) MUTATED       10     18     20     22     14     23
  AMP PEAK 26(12Q15) WILD-TYPE     51     48     60     89     36     43
D26V7, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         10                           51
  CLUS_2                         18                           48
  CLUS_3                         20                           60
  CLUS_4                         22                           89
  CLUS_5                         14                           36
  CLUS_6                         23                           43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(12Q15) MUTATED       56     16     35
  AMP PEAK 26(12Q15) WILD-TYPE    187     66     74
D26V8, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         56                          187
  CLUS_2                         16                           66
  CLUS_3                         35                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(12Q15) MUTATED       40     20     17
  AMP PEAK 26(12Q15) WILD-TYPE    107    101     56
D26V9, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         40                          107
  CLUS_2                         20                          101
  CLUS_3                         17                           56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(12Q15) MUTATED       21     11     12     20     13
  AMP PEAK 26(12Q15) WILD-TYPE     82     61     32     42     47
D26V10, multiclass
        clus
vv       AMP PEAK 26(12Q15) MUTATED AMP PEAK 26(12Q15) WILD-TYPE
  CLUS_1                         21                           82
  CLUS_2                         11                           61
  CLUS_3                         12                           32
  CLUS_4                         20                           42
  CLUS_5                         13                           47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(13Q12.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(13Q12.3) MUTATED      113     22     34      1
  AMP PEAK 27(13Q12.3) WILD-TYPE    121    131     17      2
D27V1, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                          113                            121
  CLUS_2                           22                            131
  CLUS_3                           34                             17
  CLUS_4                            1                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(13Q12.3) MUTATED       16     39      9     62     25
  AMP PEAK 27(13Q12.3) WILD-TYPE     29     71     42     38     62
D27V2, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           16                             29
  CLUS_2                           39                             71
  CLUS_3                            9                             42
  CLUS_4                           62                             38
  CLUS_5                           25                             62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(13Q12.3) MUTATED       16     41     29     30     16
  AMP PEAK 27(13Q12.3) WILD-TYPE     14     51     53     63     43
D27V3, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           16                             14
  CLUS_2                           41                             51
  CLUS_3                           29                             53
  CLUS_4                           30                             63
  CLUS_5                           16                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(13Q12.3) MUTATED       57     20     30     25
  AMP PEAK 27(13Q12.3) WILD-TYPE     83     38     48     55
D27V4, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           57                             83
  CLUS_2                           20                             38
  CLUS_3                           30                             48
  CLUS_4                           25                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(13Q12.3) MUTATED       56     25     33     17     30
  AMP PEAK 27(13Q12.3) WILD-TYPE     38     69     60     65     20
D27V5, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           56                             38
  CLUS_2                           25                             69
  CLUS_3                           33                             60
  CLUS_4                           17                             65
  CLUS_5                           30                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(13Q12.3) MUTATED       36     21     58     46
  AMP PEAK 27(13Q12.3) WILD-TYPE     73     61     77     41
D27V6, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           36                             73
  CLUS_2                           21                             61
  CLUS_3                           58                             77
  CLUS_4                           46                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(13Q12.3) MUTATED       34     22     31     29      8     43
  AMP PEAK 27(13Q12.3) WILD-TYPE     27     44     49     82     42     23
D27V7, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           34                             27
  CLUS_2                           22                             44
  CLUS_3                           31                             49
  CLUS_4                           29                             82
  CLUS_5                            8                             42
  CLUS_6                           43                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(13Q12.3) MUTATED       80     26     61
  AMP PEAK 27(13Q12.3) WILD-TYPE    163     56     48
D27V8, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           80                            163
  CLUS_2                           26                             56
  CLUS_3                           61                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(13Q12.3) MUTATED       60     42     27
  AMP PEAK 27(13Q12.3) WILD-TYPE     87     79     46
D27V9, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           60                             87
  CLUS_2                           42                             79
  CLUS_3                           27                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(13Q12.3) MUTATED       34     21     17     41     16
  AMP PEAK 27(13Q12.3) WILD-TYPE     69     51     27     21     44
D27V10, multiclass
        clus
vv       AMP PEAK 27(13Q12.3) MUTATED AMP PEAK 27(13Q12.3) WILD-TYPE
  CLUS_1                           34                             69
  CLUS_2                           21                             51
  CLUS_3                           17                             27
  CLUS_4                           41                             21
  CLUS_5                           16                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(13Q22.1) MUTATED      124     26     31      0
  AMP PEAK 28(13Q22.1) WILD-TYPE    110    127     20      3
D28V1, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                          124                            110
  CLUS_2                           26                            127
  CLUS_3                           31                             20
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(13Q22.1) MUTATED       17     38     10     69     25
  AMP PEAK 28(13Q22.1) WILD-TYPE     28     72     41     31     62
D28V2, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           17                             28
  CLUS_2                           38                             72
  CLUS_3                           10                             41
  CLUS_4                           69                             31
  CLUS_5                           25                             62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(13Q22.1) MUTATED       16     41     35     33     20
  AMP PEAK 28(13Q22.1) WILD-TYPE     14     51     47     60     39
D28V3, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           16                             14
  CLUS_2                           41                             51
  CLUS_3                           35                             47
  CLUS_4                           33                             60
  CLUS_5                           20                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(13Q22.1) MUTATED       63     22     33     27
  AMP PEAK 28(13Q22.1) WILD-TYPE     77     36     45     53
D28V4, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           63                             77
  CLUS_2                           22                             36
  CLUS_3                           33                             45
  CLUS_4                           27                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(13Q22.1) MUTATED       64     22     36     19     28
  AMP PEAK 28(13Q22.1) WILD-TYPE     30     72     57     63     22
D28V5, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           64                             30
  CLUS_2                           22                             72
  CLUS_3                           36                             57
  CLUS_4                           19                             63
  CLUS_5                           28                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(13Q22.1) MUTATED       36     19     69     45
  AMP PEAK 28(13Q22.1) WILD-TYPE     73     63     66     42
D28V6, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           36                             73
  CLUS_2                           19                             63
  CLUS_3                           69                             66
  CLUS_4                           45                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(13Q22.1) MUTATED       35     23     27     30     13     49
  AMP PEAK 28(13Q22.1) WILD-TYPE     26     43     53     81     37     17
D28V7, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           35                             26
  CLUS_2                           23                             43
  CLUS_3                           27                             53
  CLUS_4                           30                             81
  CLUS_5                           13                             37
  CLUS_6                           49                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(13Q22.1) MUTATED       82     26     69
  AMP PEAK 28(13Q22.1) WILD-TYPE    161     56     40
D28V8, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           82                            161
  CLUS_2                           26                             56
  CLUS_3                           69                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(13Q22.1) MUTATED       66     39     33
  AMP PEAK 28(13Q22.1) WILD-TYPE     81     82     40
D28V9, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           66                             81
  CLUS_2                           39                             82
  CLUS_3                           33                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(13Q22.1) MUTATED       38     20     17     42     21
  AMP PEAK 28(13Q22.1) WILD-TYPE     65     52     27     20     39
D28V10, multiclass
        clus
vv       AMP PEAK 28(13Q22.1) MUTATED AMP PEAK 28(13Q22.1) WILD-TYPE
  CLUS_1                           38                             65
  CLUS_2                           20                             52
  CLUS_3                           17                             27
  CLUS_4                           42                             20
  CLUS_5                           21                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(14Q21.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(14Q21.3) MUTATED       41      5      8      0
  AMP PEAK 29(14Q21.3) WILD-TYPE    193    148     43      3
D29V1, multiclass
        clus
vv       AMP PEAK 29(14Q21.3) MUTATED AMP PEAK 29(14Q21.3) WILD-TYPE
  CLUS_1                           41                            193
  CLUS_2                            5                            148
  CLUS_3                            8                             43
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(14Q21.3) MUTATED       10     14      0     16      8
  AMP PEAK 29(14Q21.3) WILD-TYPE     35     96     51     84     79
D29V2, multiclass
        clus
vv       AMP PEAK 29(14Q21.3) MUTATED AMP PEAK 29(14Q21.3) WILD-TYPE
  CLUS_1                           10                             35
  CLUS_2                           14                             96
  CLUS_3                            0                             51
  CLUS_4                           16                             84
  CLUS_5                            8                             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(14Q21.3) MUTATED        4     12      9     11      5
  AMP PEAK 29(14Q21.3) WILD-TYPE     26     80     73     82     54
D29V3, multiclass
        clus
vv       AMP PEAK 29(14Q21.3) MUTATED AMP PEAK 29(14Q21.3) WILD-TYPE
  CLUS_1                            4                             26
  CLUS_2                           12                             80
  CLUS_3                            9                             73
  CLUS_4                           11                             82
  CLUS_5                            5                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(14Q21.3) MUTATED       22      4      8      7
  AMP PEAK 29(14Q21.3) WILD-TYPE    118     54     70     73
D29V4, multiclass
        clus
vv       AMP PEAK 29(14Q21.3) MUTATED AMP PEAK 29(14Q21.3) WILD-TYPE
  CLUS_1                           22                            118
  CLUS_2                            4                             54
  CLUS_3                            8                             70
  CLUS_4                            7                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(14Q21.3) MUTATED       18      6      7      9      9
  AMP PEAK 29(14Q21.3) WILD-TYPE     76     88     86     73     41
D29V5, multiclass
        clus
vv       AMP PEAK 29(14Q21.3) MUTATED AMP PEAK 29(14Q21.3) WILD-TYPE
  CLUS_1                           18                             76
  CLUS_2                            6                             88
  CLUS_3                            7                             86
  CLUS_4                            9                             73
  CLUS_5                            9                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(14Q21.3) MUTATED       15      4     19     11
  AMP PEAK 29(14Q21.3) WILD-TYPE     94     78    116     76
D29V6, multiclass
        clus
vv       AMP PEAK 29(14Q21.3) MUTATED AMP PEAK 29(14Q21.3) WILD-TYPE
  CLUS_1                           15                             94
  CLUS_2                            4                             78
  CLUS_3                           19                            116
  CLUS_4                           11                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(14Q21.3) MUTATED       11      6     10      8      8     10
  AMP PEAK 29(14Q21.3) WILD-TYPE     50     60     70    103     42     56
D29V7, multiclass
        clus
vv       AMP PEAK 29(14Q21.3) MUTATED AMP PEAK 29(14Q21.3) WILD-TYPE
  CLUS_1                           11                             50
  CLUS_2                            6                             60
  CLUS_3                           10                             70
  CLUS_4                            8                            103
  CLUS_5                            8                             42
  CLUS_6                           10                             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(14Q21.3) MUTATED       27      9     17
  AMP PEAK 29(14Q21.3) WILD-TYPE    216     73     92
D29V8, multiclass
        clus
vv       AMP PEAK 29(14Q21.3) MUTATED AMP PEAK 29(14Q21.3) WILD-TYPE
  CLUS_1                           27                            216
  CLUS_2                            9                             73
  CLUS_3                           17                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(14Q21.3) MUTATED       27      9      5
  AMP PEAK 29(14Q21.3) WILD-TYPE    120    112     68
D29V9, multiclass
        clus
vv       AMP PEAK 29(14Q21.3) MUTATED AMP PEAK 29(14Q21.3) WILD-TYPE
  CLUS_1                           27                            120
  CLUS_2                            9                            112
  CLUS_3                            5                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(14Q21.3) MUTATED       11      5      4      9     12
  AMP PEAK 29(14Q21.3) WILD-TYPE     92     67     40     53     48
D29V10, multiclass
        clus
vv       AMP PEAK 29(14Q21.3) MUTATED AMP PEAK 29(14Q21.3) WILD-TYPE
  CLUS_1                           11                             92
  CLUS_2                            5                             67
  CLUS_3                            4                             40
  CLUS_4                            9                             53
  CLUS_5                           12                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = AMP PEAK 30(15Q26.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(15Q26.1) MUTATED       97      9      7      0
  AMP PEAK 30(15Q26.1) WILD-TYPE    137    144     44      3
D30V1, multiclass
        clus
vv       AMP PEAK 30(15Q26.1) MUTATED AMP PEAK 30(15Q26.1) WILD-TYPE
  CLUS_1                           97                            137
  CLUS_2                            9                            144
  CLUS_3                            7                             44
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(15Q26.1) MUTATED       21     27      2     41     11
  AMP PEAK 30(15Q26.1) WILD-TYPE     24     83     49     59     76
D30V2, multiclass
        clus
vv       AMP PEAK 30(15Q26.1) MUTATED AMP PEAK 30(15Q26.1) WILD-TYPE
  CLUS_1                           21                             24
  CLUS_2                           27                             83
  CLUS_3                            2                             49
  CLUS_4                           41                             59
  CLUS_5                           11                             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(15Q26.1) MUTATED       11     30     19     18     13
  AMP PEAK 30(15Q26.1) WILD-TYPE     19     62     63     75     46
D30V3, multiclass
        clus
vv       AMP PEAK 30(15Q26.1) MUTATED AMP PEAK 30(15Q26.1) WILD-TYPE
  CLUS_1                           11                             19
  CLUS_2                           30                             62
  CLUS_3                           19                             63
  CLUS_4                           18                             75
  CLUS_5                           13                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(15Q26.1) MUTATED       46     12     22     11
  AMP PEAK 30(15Q26.1) WILD-TYPE     94     46     56     69
D30V4, multiclass
        clus
vv       AMP PEAK 30(15Q26.1) MUTATED AMP PEAK 30(15Q26.1) WILD-TYPE
  CLUS_1                           46                             94
  CLUS_2                           12                             46
  CLUS_3                           22                             56
  CLUS_4                           11                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(15Q26.1) MUTATED       39      8     24     20     14
  AMP PEAK 30(15Q26.1) WILD-TYPE     55     86     69     62     36
D30V5, multiclass
        clus
vv       AMP PEAK 30(15Q26.1) MUTATED AMP PEAK 30(15Q26.1) WILD-TYPE
  CLUS_1                           39                             55
  CLUS_2                            8                             86
  CLUS_3                           24                             69
  CLUS_4                           20                             62
  CLUS_5                           14                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(15Q26.1) MUTATED       25      6     51     23
  AMP PEAK 30(15Q26.1) WILD-TYPE     84     76     84     64
D30V6, multiclass
        clus
vv       AMP PEAK 30(15Q26.1) MUTATED AMP PEAK 30(15Q26.1) WILD-TYPE
  CLUS_1                           25                             84
  CLUS_2                            6                             76
  CLUS_3                           51                             84
  CLUS_4                           23                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(15Q26.1) MUTATED       19     17     18     13     12     32
  AMP PEAK 30(15Q26.1) WILD-TYPE     42     49     62     98     38     34
D30V7, multiclass
        clus
vv       AMP PEAK 30(15Q26.1) MUTATED AMP PEAK 30(15Q26.1) WILD-TYPE
  CLUS_1                           19                             42
  CLUS_2                           17                             49
  CLUS_3                           18                             62
  CLUS_4                           13                             98
  CLUS_5                           12                             38
  CLUS_6                           32                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(15Q26.1) MUTATED       61      8     42
  AMP PEAK 30(15Q26.1) WILD-TYPE    182     74     67
D30V8, multiclass
        clus
vv       AMP PEAK 30(15Q26.1) MUTATED AMP PEAK 30(15Q26.1) WILD-TYPE
  CLUS_1                           61                            182
  CLUS_2                            8                             74
  CLUS_3                           42                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(15Q26.1) MUTATED       51     17     25
  AMP PEAK 30(15Q26.1) WILD-TYPE     96    104     48
D30V9, multiclass
        clus
vv       AMP PEAK 30(15Q26.1) MUTATED AMP PEAK 30(15Q26.1) WILD-TYPE
  CLUS_1                           51                             96
  CLUS_2                           17                            104
  CLUS_3                           25                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(15Q26.1) MUTATED       29      7     15     24     18
  AMP PEAK 30(15Q26.1) WILD-TYPE     74     65     29     38     42
D30V10, multiclass
        clus
vv       AMP PEAK 30(15Q26.1) MUTATED AMP PEAK 30(15Q26.1) WILD-TYPE
  CLUS_1                           29                             74
  CLUS_2                            7                             65
  CLUS_3                           15                             29
  CLUS_4                           24                             38
  CLUS_5                           18                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = AMP PEAK 31(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(17Q12) MUTATED      121     11     13      2
  AMP PEAK 31(17Q12) WILD-TYPE    113    142     38      1
D31V1, multiclass
        clus
vv       AMP PEAK 31(17Q12) MUTATED AMP PEAK 31(17Q12) WILD-TYPE
  CLUS_1                        121                          113
  CLUS_2                         11                          142
  CLUS_3                         13                           38
  CLUS_4                          2                            1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(17Q12) MUTATED       16     30     16     59     12
  AMP PEAK 31(17Q12) WILD-TYPE     29     80     35     41     75
D31V2, multiclass
        clus
vv       AMP PEAK 31(17Q12) MUTATED AMP PEAK 31(17Q12) WILD-TYPE
  CLUS_1                         16                           29
  CLUS_2                         30                           80
  CLUS_3                         16                           35
  CLUS_4                         59                           41
  CLUS_5                         12                           75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(17Q12) MUTATED       16     37     24     22     14
  AMP PEAK 31(17Q12) WILD-TYPE     14     55     58     71     45
D31V3, multiclass
        clus
vv       AMP PEAK 31(17Q12) MUTATED AMP PEAK 31(17Q12) WILD-TYPE
  CLUS_1                         16                           14
  CLUS_2                         37                           55
  CLUS_3                         24                           58
  CLUS_4                         22                           71
  CLUS_5                         14                           45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(17Q12) MUTATED       55      7     33     18
  AMP PEAK 31(17Q12) WILD-TYPE     85     51     45     62
D31V4, multiclass
        clus
vv       AMP PEAK 31(17Q12) MUTATED AMP PEAK 31(17Q12) WILD-TYPE
  CLUS_1                         55                           85
  CLUS_2                          7                           51
  CLUS_3                         33                           45
  CLUS_4                         18                           62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(17Q12) MUTATED       54     12     27     28     16
  AMP PEAK 31(17Q12) WILD-TYPE     40     82     66     54     34
D31V5, multiclass
        clus
vv       AMP PEAK 31(17Q12) MUTATED AMP PEAK 31(17Q12) WILD-TYPE
  CLUS_1                         54                           40
  CLUS_2                         12                           82
  CLUS_3                         27                           66
  CLUS_4                         28                           54
  CLUS_5                         16                           34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(17Q12) MUTATED       39     12     61     25
  AMP PEAK 31(17Q12) WILD-TYPE     70     70     74     62
D31V6, multiclass
        clus
vv       AMP PEAK 31(17Q12) MUTATED AMP PEAK 31(17Q12) WILD-TYPE
  CLUS_1                         39                           70
  CLUS_2                         12                           70
  CLUS_3                         61                           74
  CLUS_4                         25                           62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 31(17Q12) MUTATED       21     17     26     20     20     40
  AMP PEAK 31(17Q12) WILD-TYPE     40     49     54     91     30     26
D31V7, multiclass
        clus
vv       AMP PEAK 31(17Q12) MUTATED AMP PEAK 31(17Q12) WILD-TYPE
  CLUS_1                         21                           40
  CLUS_2                         17                           49
  CLUS_3                         26                           54
  CLUS_4                         20                           91
  CLUS_5                         20                           30
  CLUS_6                         40                           26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(17Q12) MUTATED       71     16     57
  AMP PEAK 31(17Q12) WILD-TYPE    172     66     52
D31V8, multiclass
        clus
vv       AMP PEAK 31(17Q12) MUTATED AMP PEAK 31(17Q12) WILD-TYPE
  CLUS_1                         71                          172
  CLUS_2                         16                           66
  CLUS_3                         57                           52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(17Q12) MUTATED       57     31     25
  AMP PEAK 31(17Q12) WILD-TYPE     90     90     48
D31V9, multiclass
        clus
vv       AMP PEAK 31(17Q12) MUTATED AMP PEAK 31(17Q12) WILD-TYPE
  CLUS_1                         57                           90
  CLUS_2                         31                           90
  CLUS_3                         25                           48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(17Q12) MUTATED       34     13     16     32     18
  AMP PEAK 31(17Q12) WILD-TYPE     69     59     28     30     42
D31V10, multiclass
        clus
vv       AMP PEAK 31(17Q12) MUTATED AMP PEAK 31(17Q12) WILD-TYPE
  CLUS_1                         34                           69
  CLUS_2                         13                           59
  CLUS_3                         16                           28
  CLUS_4                         32                           30
  CLUS_5                         18                           42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = AMP PEAK 32(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(18Q11.2) MUTATED      109     16     15      0
  AMP PEAK 32(18Q11.2) WILD-TYPE    125    137     36      3
D32V1, multiclass
        clus
vv       AMP PEAK 32(18Q11.2) MUTATED AMP PEAK 32(18Q11.2) WILD-TYPE
  CLUS_1                          109                            125
  CLUS_2                           16                            137
  CLUS_3                           15                             36
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(18Q11.2) MUTATED       19     32      6     46     20
  AMP PEAK 32(18Q11.2) WILD-TYPE     26     78     45     54     67
D32V2, multiclass
        clus
vv       AMP PEAK 32(18Q11.2) MUTATED AMP PEAK 32(18Q11.2) WILD-TYPE
  CLUS_1                           19                             26
  CLUS_2                           32                             78
  CLUS_3                            6                             45
  CLUS_4                           46                             54
  CLUS_5                           20                             67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(18Q11.2) MUTATED       10     28     26     28     15
  AMP PEAK 32(18Q11.2) WILD-TYPE     20     64     56     65     44
D32V3, multiclass
        clus
vv       AMP PEAK 32(18Q11.2) MUTATED AMP PEAK 32(18Q11.2) WILD-TYPE
  CLUS_1                           10                             20
  CLUS_2                           28                             64
  CLUS_3                           26                             56
  CLUS_4                           28                             65
  CLUS_5                           15                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(18Q11.2) MUTATED       53     13     18     23
  AMP PEAK 32(18Q11.2) WILD-TYPE     87     45     60     57
D32V4, multiclass
        clus
vv       AMP PEAK 32(18Q11.2) MUTATED AMP PEAK 32(18Q11.2) WILD-TYPE
  CLUS_1                           53                             87
  CLUS_2                           13                             45
  CLUS_3                           18                             60
  CLUS_4                           23                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(18Q11.2) MUTATED       47     17     22     33     10
  AMP PEAK 32(18Q11.2) WILD-TYPE     47     77     71     49     40
D32V5, multiclass
        clus
vv       AMP PEAK 32(18Q11.2) MUTATED AMP PEAK 32(18Q11.2) WILD-TYPE
  CLUS_1                           47                             47
  CLUS_2                           17                             77
  CLUS_3                           22                             71
  CLUS_4                           33                             49
  CLUS_5                           10                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(18Q11.2) MUTATED       46     16     48     19
  AMP PEAK 32(18Q11.2) WILD-TYPE     63     66     87     68
D32V6, multiclass
        clus
vv       AMP PEAK 32(18Q11.2) MUTATED AMP PEAK 32(18Q11.2) WILD-TYPE
  CLUS_1                           46                             63
  CLUS_2                           16                             66
  CLUS_3                           48                             87
  CLUS_4                           19                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 32(18Q11.2) MUTATED       20     17     22     28     18     33
  AMP PEAK 32(18Q11.2) WILD-TYPE     41     49     58     83     32     33
D32V7, multiclass
        clus
vv       AMP PEAK 32(18Q11.2) MUTATED AMP PEAK 32(18Q11.2) WILD-TYPE
  CLUS_1                           20                             41
  CLUS_2                           17                             49
  CLUS_3                           22                             58
  CLUS_4                           28                             83
  CLUS_5                           18                             32
  CLUS_6                           33                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(18Q11.2) MUTATED       66     20     52
  AMP PEAK 32(18Q11.2) WILD-TYPE    177     62     57
D32V8, multiclass
        clus
vv       AMP PEAK 32(18Q11.2) MUTATED AMP PEAK 32(18Q11.2) WILD-TYPE
  CLUS_1                           66                            177
  CLUS_2                           20                             62
  CLUS_3                           52                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(18Q11.2) MUTATED       53     30     20
  AMP PEAK 32(18Q11.2) WILD-TYPE     94     91     53
D32V9, multiclass
        clus
vv       AMP PEAK 32(18Q11.2) MUTATED AMP PEAK 32(18Q11.2) WILD-TYPE
  CLUS_1                           53                             94
  CLUS_2                           30                             91
  CLUS_3                           20                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(18Q11.2) MUTATED       26     16     11     27     23
  AMP PEAK 32(18Q11.2) WILD-TYPE     77     56     33     35     37
D32V10, multiclass
        clus
vv       AMP PEAK 32(18Q11.2) MUTATED AMP PEAK 32(18Q11.2) WILD-TYPE
  CLUS_1                           26                             77
  CLUS_2                           16                             56
  CLUS_3                           11                             33
  CLUS_4                           27                             35
  CLUS_5                           23                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = AMP PEAK 33(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(19Q12) MUTATED      104     12     14      0
  AMP PEAK 33(19Q12) WILD-TYPE    130    141     37      3
D33V1, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                        104                          130
  CLUS_2                         12                          141
  CLUS_3                         14                           37
  CLUS_4                          0                            3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(19Q12) MUTATED       11     20      9     62     16
  AMP PEAK 33(19Q12) WILD-TYPE     34     90     42     38     71
D33V2, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         11                           34
  CLUS_2                         20                           90
  CLUS_3                          9                           42
  CLUS_4                         62                           38
  CLUS_5                         16                           71
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(19Q12) MUTATED        9     20     37     15     21
  AMP PEAK 33(19Q12) WILD-TYPE     21     72     45     78     38
D33V3, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                          9                           21
  CLUS_2                         20                           72
  CLUS_3                         37                           45
  CLUS_4                         15                           78
  CLUS_5                         21                           38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(19Q12) MUTATED       59     11     17     15
  AMP PEAK 33(19Q12) WILD-TYPE     81     47     61     65
D33V4, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         59                           81
  CLUS_2                         11                           47
  CLUS_3                         17                           61
  CLUS_4                         15                           65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(19Q12) MUTATED       57     15     18     18     13
  AMP PEAK 33(19Q12) WILD-TYPE     37     79     75     64     37
D33V5, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         57                           37
  CLUS_2                         15                           79
  CLUS_3                         18                           75
  CLUS_4                         18                           64
  CLUS_5                         13                           37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(19Q12) MUTATED       26     13     60     22
  AMP PEAK 33(19Q12) WILD-TYPE     83     69     75     65
D33V6, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         26                           83
  CLUS_2                         13                           69
  CLUS_3                         60                           75
  CLUS_4                         22                           65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 33(19Q12) MUTATED       18     13     18     26      7     47
  AMP PEAK 33(19Q12) WILD-TYPE     43     53     62     85     43     19
D33V7, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         18                           43
  CLUS_2                         13                           53
  CLUS_3                         18                           62
  CLUS_4                         26                           85
  CLUS_5                          7                           43
  CLUS_6                         47                           19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(19Q12) MUTATED       46     15     68
  AMP PEAK 33(19Q12) WILD-TYPE    197     67     41
D33V8, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         46                          197
  CLUS_2                         15                           67
  CLUS_3                         68                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(19Q12) MUTATED       55     30     19
  AMP PEAK 33(19Q12) WILD-TYPE     92     91     54
D33V9, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         55                           92
  CLUS_2                         30                           91
  CLUS_3                         19                           54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(19Q12) MUTATED       20     13     10     43     18
  AMP PEAK 33(19Q12) WILD-TYPE     83     59     34     19     42
D33V10, multiclass
        clus
vv       AMP PEAK 33(19Q12) MUTATED AMP PEAK 33(19Q12) WILD-TYPE
  CLUS_1                         20                           83
  CLUS_2                         13                           59
  CLUS_3                         10                           34
  CLUS_4                         43                           19
  CLUS_5                         18                           42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = AMP PEAK 34(19Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(19Q13.32) MUTATED       79     13     19      0
  AMP PEAK 34(19Q13.32) WILD-TYPE    155    140     32      3
D34V1, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            79                             155
  CLUS_2                            13                             140
  CLUS_3                            19                              32
  CLUS_4                             0                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(19Q13.32) MUTATED       10     22     12     40     14
  AMP PEAK 34(19Q13.32) WILD-TYPE     35     88     39     60     73
D34V2, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            10                              35
  CLUS_2                            22                              88
  CLUS_3                            12                              39
  CLUS_4                            40                              60
  CLUS_5                            14                              73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(19Q13.32) MUTATED        9     19     24     15     16
  AMP PEAK 34(19Q13.32) WILD-TYPE     21     73     58     78     43
D34V3, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                             9                              21
  CLUS_2                            19                              73
  CLUS_3                            24                              58
  CLUS_4                            15                              78
  CLUS_5                            16                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(19Q13.32) MUTATED       45      9     17     12
  AMP PEAK 34(19Q13.32) WILD-TYPE     95     49     61     68
D34V4, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            45                              95
  CLUS_2                             9                              49
  CLUS_3                            17                              61
  CLUS_4                            12                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(19Q13.32) MUTATED       40     14     21     20     10
  AMP PEAK 34(19Q13.32) WILD-TYPE     54     80     72     62     40
D34V5, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            40                              54
  CLUS_2                            14                              80
  CLUS_3                            21                              72
  CLUS_4                            20                              62
  CLUS_5                            10                              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(19Q13.32) MUTATED       22     13     49     21
  AMP PEAK 34(19Q13.32) WILD-TYPE     87     69     86     66
D34V6, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            22                              87
  CLUS_2                            13                              69
  CLUS_3                            49                              86
  CLUS_4                            21                              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 34(19Q13.32) MUTATED       13     12     22     19     10     34
  AMP PEAK 34(19Q13.32) WILD-TYPE     48     54     58     92     40     32
D34V7, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            13                              48
  CLUS_2                            12                              54
  CLUS_3                            22                              58
  CLUS_4                            19                              92
  CLUS_5                            10                              40
  CLUS_6                            34                              32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(19Q13.32) MUTATED       53     15     42
  AMP PEAK 34(19Q13.32) WILD-TYPE    190     67     67
D34V8, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            53                             190
  CLUS_2                            15                              67
  CLUS_3                            42                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(19Q13.32) MUTATED       45     26     12
  AMP PEAK 34(19Q13.32) WILD-TYPE    102     95     61
D34V9, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            45                             102
  CLUS_2                            26                              95
  CLUS_3                            12                              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(19Q13.32) MUTATED       27     10      7     28     11
  AMP PEAK 34(19Q13.32) WILD-TYPE     76     62     37     34     49
D34V10, multiclass
        clus
vv       AMP PEAK 34(19Q13.32) MUTATED AMP PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            27                              76
  CLUS_2                            10                              62
  CLUS_3                             7                              37
  CLUS_4                            28                              34
  CLUS_5                            11                              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = AMP PEAK 35(20Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(20Q13.2) MUTATED      205     46     39      3
  AMP PEAK 35(20Q13.2) WILD-TYPE     29    107     12      0
D35V1, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                          205                             29
  CLUS_2                           46                            107
  CLUS_3                           39                             12
  CLUS_4                            3                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(20Q13.2) MUTATED       35     56     36     97     37
  AMP PEAK 35(20Q13.2) WILD-TYPE     10     54     15      3     50
D35V2, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           35                             10
  CLUS_2                           56                             54
  CLUS_3                           36                             15
  CLUS_4                           97                              3
  CLUS_5                           37                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(20Q13.2) MUTATED       24     64     57     49     41
  AMP PEAK 35(20Q13.2) WILD-TYPE      6     28     25     44     18
D35V3, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           24                              6
  CLUS_2                           64                             28
  CLUS_3                           57                             25
  CLUS_4                           49                             44
  CLUS_5                           41                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(20Q13.2) MUTATED      112     27     54     42
  AMP PEAK 35(20Q13.2) WILD-TYPE     28     31     24     38
D35V4, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                          112                             28
  CLUS_2                           27                             31
  CLUS_3                           54                             24
  CLUS_4                           42                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(20Q13.2) MUTATED       92     46     48     56     35
  AMP PEAK 35(20Q13.2) WILD-TYPE      2     48     45     26     15
D35V5, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           92                              2
  CLUS_2                           46                             48
  CLUS_3                           48                             45
  CLUS_4                           56                             26
  CLUS_5                           35                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(20Q13.2) MUTATED       74     38    115     50
  AMP PEAK 35(20Q13.2) WILD-TYPE     35     44     20     37
D35V6, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           74                             35
  CLUS_2                           38                             44
  CLUS_3                          115                             20
  CLUS_4                           50                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 35(20Q13.2) MUTATED       36     39     54     62     32     65
  AMP PEAK 35(20Q13.2) WILD-TYPE     25     27     26     49     18      1
D35V7, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           36                             25
  CLUS_2                           39                             27
  CLUS_3                           54                             26
  CLUS_4                           62                             49
  CLUS_5                           32                             18
  CLUS_6                           65                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(20Q13.2) MUTATED      144     42    102
  AMP PEAK 35(20Q13.2) WILD-TYPE     99     40      7
D35V8, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                          144                             99
  CLUS_2                           42                             40
  CLUS_3                          102                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(20Q13.2) MUTATED      105     69     47
  AMP PEAK 35(20Q13.2) WILD-TYPE     42     52     26
D35V9, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                          105                             42
  CLUS_2                           69                             52
  CLUS_3                           47                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(20Q13.2) MUTATED       54     38     30     60     39
  AMP PEAK 35(20Q13.2) WILD-TYPE     49     34     14      2     21
D35V10, multiclass
        clus
vv       AMP PEAK 35(20Q13.2) MUTATED AMP PEAK 35(20Q13.2) WILD-TYPE
  CLUS_1                           54                             49
  CLUS_2                           38                             34
  CLUS_3                           30                             14
  CLUS_4                           60                              2
  CLUS_5                           39                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = AMP PEAK 36(XQ27.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(XQ27.3) MUTATED       51     14     18      0
  AMP PEAK 36(XQ27.3) WILD-TYPE    183    139     33      3
D36V1, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          51                           183
  CLUS_2                          14                           139
  CLUS_3                          18                            33
  CLUS_4                           0                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(XQ27.3) MUTATED       11     24     10     20      8
  AMP PEAK 36(XQ27.3) WILD-TYPE     34     86     41     80     79
D36V2, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          11                            34
  CLUS_2                          24                            86
  CLUS_3                          10                            41
  CLUS_4                          20                            80
  CLUS_5                           8                            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(XQ27.3) MUTATED        6     18     12     19     10
  AMP PEAK 36(XQ27.3) WILD-TYPE     24     74     70     74     49
D36V3, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                           6                            24
  CLUS_2                          18                            74
  CLUS_3                          12                            70
  CLUS_4                          19                            74
  CLUS_5                          10                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(XQ27.3) MUTATED       27      9     18     11
  AMP PEAK 36(XQ27.3) WILD-TYPE    113     49     60     69
D36V4, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          27                           113
  CLUS_2                           9                            49
  CLUS_3                          18                            60
  CLUS_4                          11                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(XQ27.3) MUTATED       15     10     17     14     17
  AMP PEAK 36(XQ27.3) WILD-TYPE     79     84     76     68     33
D36V5, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          15                            79
  CLUS_2                          10                            84
  CLUS_3                          17                            76
  CLUS_4                          14                            68
  CLUS_5                          17                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(XQ27.3) MUTATED       19      9     19     26
  AMP PEAK 36(XQ27.3) WILD-TYPE     90     73    116     61
D36V6, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          19                            90
  CLUS_2                           9                            73
  CLUS_3                          19                           116
  CLUS_4                          26                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 36(XQ27.3) MUTATED       24     13     14     12      6     12
  AMP PEAK 36(XQ27.3) WILD-TYPE     37     53     66     99     44     54
D36V7, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          24                            37
  CLUS_2                          13                            53
  CLUS_3                          14                            66
  CLUS_4                          12                            99
  CLUS_5                           6                            44
  CLUS_6                          12                            54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(XQ27.3) MUTATED       49     13     19
  AMP PEAK 36(XQ27.3) WILD-TYPE    194     69     90
D36V8, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          49                           194
  CLUS_2                          13                            69
  CLUS_3                          19                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(XQ27.3) MUTATED       31     16     16
  AMP PEAK 36(XQ27.3) WILD-TYPE    116    105     57
D36V9, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          31                           116
  CLUS_2                          16                           105
  CLUS_3                          16                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(XQ27.3) MUTATED       19      8     11     13     12
  AMP PEAK 36(XQ27.3) WILD-TYPE     84     64     33     49     48
D36V10, multiclass
        clus
vv       AMP PEAK 36(XQ27.3) MUTATED AMP PEAK 36(XQ27.3) WILD-TYPE
  CLUS_1                          19                            84
  CLUS_2                           8                            64
  CLUS_3                          11                            33
  CLUS_4                          13                            49
  CLUS_5                          12                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED      123      5      7      0
  DEL PEAK  1(1P36.11) WILD-TYPE    111    148     44      3
D37V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                          123                            111
  CLUS_2                            5                            148
  CLUS_3                            7                             44
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       27     23      5     52     10
  DEL PEAK  1(1P36.11) WILD-TYPE     18     87     46     48     77
D37V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           27                             18
  CLUS_2                           23                             87
  CLUS_3                            5                             46
  CLUS_4                           52                             48
  CLUS_5                           10                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       12     40     22     16     18
  DEL PEAK  1(1P36.11) WILD-TYPE     18     52     60     77     41
D37V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           12                             18
  CLUS_2                           40                             52
  CLUS_3                           22                             60
  CLUS_4                           16                             77
  CLUS_5                           18                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       50     13     34     11
  DEL PEAK  1(1P36.11) WILD-TYPE     90     45     44     69
D37V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           50                             90
  CLUS_2                           13                             45
  CLUS_3                           34                             44
  CLUS_4                           11                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       47     12     25     28     16
  DEL PEAK  1(1P36.11) WILD-TYPE     47     82     68     54     34
D37V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           47                             47
  CLUS_2                           12                             82
  CLUS_3                           25                             68
  CLUS_4                           28                             54
  CLUS_5                           16                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       38     11     54     25
  DEL PEAK  1(1P36.11) WILD-TYPE     71     71     81     62
D37V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           38                             71
  CLUS_2                           11                             71
  CLUS_3                           54                             81
  CLUS_4                           25                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       15     19     25     18     15     40
  DEL PEAK  1(1P36.11) WILD-TYPE     46     47     55     93     35     26
D37V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           15                             46
  CLUS_2                           19                             47
  CLUS_3                           25                             55
  CLUS_4                           18                             93
  CLUS_5                           15                             35
  CLUS_6                           40                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       63     14     55
  DEL PEAK  1(1P36.11) WILD-TYPE    180     68     54
D37V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           63                            180
  CLUS_2                           14                             68
  CLUS_3                           55                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       55     24     24
  DEL PEAK  1(1P36.11) WILD-TYPE     92     97     49
D37V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           55                             92
  CLUS_2                           24                             97
  CLUS_3                           24                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       31      7     12     33     20
  DEL PEAK  1(1P36.11) WILD-TYPE     72     65     32     29     40
D37V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           31                             72
  CLUS_2                            7                             65
  CLUS_3                           12                             32
  CLUS_4                           33                             29
  CLUS_5                           20                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  2(1P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED       80      4      9      0
  DEL PEAK  2(1P13.2) WILD-TYPE    154    149     42      3
D38V1, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          80                           154
  CLUS_2                           4                           149
  CLUS_3                           9                            42
  CLUS_4                           0                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED       15     20      6     38      5
  DEL PEAK  2(1P13.2) WILD-TYPE     30     90     45     62     82
D38V2, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          15                            30
  CLUS_2                          20                            90
  CLUS_3                           6                            45
  CLUS_4                          38                            62
  CLUS_5                           5                            82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED        6     16     24     10     20
  DEL PEAK  2(1P13.2) WILD-TYPE     24     76     58     83     39
D38V3, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           6                            24
  CLUS_2                          16                            76
  CLUS_3                          24                            58
  CLUS_4                          10                            83
  CLUS_5                          20                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED       39     10     14     13
  DEL PEAK  2(1P13.2) WILD-TYPE    101     48     64     67
D38V4, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          39                           101
  CLUS_2                          10                            48
  CLUS_3                          14                            64
  CLUS_4                          13                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED       36      6     18     13     14
  DEL PEAK  2(1P13.2) WILD-TYPE     58     88     75     69     36
D38V5, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          36                            58
  CLUS_2                           6                            88
  CLUS_3                          18                            75
  CLUS_4                          13                            69
  CLUS_5                          14                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED       21      5     40     21
  DEL PEAK  2(1P13.2) WILD-TYPE     88     77     95     66
D38V6, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          21                            88
  CLUS_2                           5                            77
  CLUS_3                          40                            95
  CLUS_4                          21                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.2) MUTATED       11     11     20     14      9     26
  DEL PEAK  2(1P13.2) WILD-TYPE     50     55     60     97     41     40
D38V7, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          11                            50
  CLUS_2                          11                            55
  CLUS_3                          20                            60
  CLUS_4                          14                            97
  CLUS_5                           9                            41
  CLUS_6                          26                            40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       48      9     34
  DEL PEAK  2(1P13.2) WILD-TYPE    195     73     75
D38V8, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          48                           195
  CLUS_2                           9                            73
  CLUS_3                          34                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       41     17     14
  DEL PEAK  2(1P13.2) WILD-TYPE    106    104     59
D38V9, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          41                           106
  CLUS_2                          17                           104
  CLUS_3                          14                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED       24      5      9     23     11
  DEL PEAK  2(1P13.2) WILD-TYPE     79     67     35     39     49
D38V10, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          24                            79
  CLUS_2                           5                            67
  CLUS_3                           9                            35
  CLUS_4                          23                            39
  CLUS_5                          11                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED       21      2      2      0
  DEL PEAK  3(1Q44) WILD-TYPE    213    151     49      3
D39V1, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        21                         213
  CLUS_2                         2                         151
  CLUS_3                         2                          49
  CLUS_4                         0                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED        5      5      2     12      0
  DEL PEAK  3(1Q44) WILD-TYPE     40    105     49     88     87
D39V2, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                          40
  CLUS_2                         5                         105
  CLUS_3                         2                          49
  CLUS_4                        12                          88
  CLUS_5                         0                          87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED        0      4      4      5      5
  DEL PEAK  3(1Q44) WILD-TYPE     30     88     78     88     54
D39V3, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         0                          30
  CLUS_2                         4                          88
  CLUS_3                         4                          78
  CLUS_4                         5                          88
  CLUS_5                         5                          54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED        6      5      1      6
  DEL PEAK  3(1Q44) WILD-TYPE    134     53     77     74
D39V4, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         6                         134
  CLUS_2                         5                          53
  CLUS_3                         1                          77
  CLUS_4                         6                          74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED        7      3      7      4      3
  DEL PEAK  3(1Q44) WILD-TYPE     87     91     86     78     47
D39V5, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         7                          87
  CLUS_2                         3                          91
  CLUS_3                         7                          86
  CLUS_4                         4                          78
  CLUS_5                         3                          47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED        5      2     13      4
  DEL PEAK  3(1Q44) WILD-TYPE    104     80    122     83
D39V6, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                         104
  CLUS_2                         2                          80
  CLUS_3                        13                         122
  CLUS_4                         4                          83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q44) MUTATED        4      3      6      4      2      5
  DEL PEAK  3(1Q44) WILD-TYPE     57     63     74    107     48     61
D39V7, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         4                          57
  CLUS_2                         3                          63
  CLUS_3                         6                          74
  CLUS_4                         4                         107
  CLUS_5                         2                          48
  CLUS_6                         5                          61
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       14      3      7
  DEL PEAK  3(1Q44) WILD-TYPE    229     79    102
D39V8, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        14                         229
  CLUS_2                         3                          79
  CLUS_3                         7                         102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       11      5      4
  DEL PEAK  3(1Q44) WILD-TYPE    136    116     69
D39V9, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        11                         136
  CLUS_2                         5                         116
  CLUS_3                         4                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED        8      1      4      5      2
  DEL PEAK  3(1Q44) WILD-TYPE     95     71     40     57     58
D39V10, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         8                          95
  CLUS_2                         1                          71
  CLUS_3                         4                          40
  CLUS_4                         5                          57
  CLUS_5                         2                          58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK  4(2Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q32.1) MUTATED       49     10      5      0
  DEL PEAK  4(2Q32.1) WILD-TYPE    185    143     46      3
D40V1, multiclass
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  CLUS_1                          49                           185
  CLUS_2                          10                           143
  CLUS_3                           5                            46
  CLUS_4                           0                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q32.1) MUTATED        9     16      1     24      6
  DEL PEAK  4(2Q32.1) WILD-TYPE     36     94     50     76     81
D40V2, multiclass
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  CLUS_1                           9                            36
  CLUS_2                          16                            94
  CLUS_3                           1                            50
  CLUS_4                          24                            76
  CLUS_5                           6                            81
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q32.1) MUTATED        5     11     12     11     10
  DEL PEAK  4(2Q32.1) WILD-TYPE     25     81     70     82     49
D40V3, multiclass
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          11                            81
  CLUS_3                          12                            70
  CLUS_4                          11                            82
  CLUS_5                          10                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q32.1) MUTATED       24      7      7     11
  DEL PEAK  4(2Q32.1) WILD-TYPE    116     51     71     69
D40V4, multiclass
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  CLUS_1                          24                           116
  CLUS_2                           7                            51
  CLUS_3                           7                            71
  CLUS_4                          11                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q32.1) MUTATED       22     12      7     13      4
  DEL PEAK  4(2Q32.1) WILD-TYPE     72     82     86     69     46
D40V5, multiclass
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  CLUS_1                          22                            72
  CLUS_2                          12                            82
  CLUS_3                           7                            86
  CLUS_4                          13                            69
  CLUS_5                           4                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q32.1) MUTATED       17     10     22      9
  DEL PEAK  4(2Q32.1) WILD-TYPE     92     72    113     78
D40V6, multiclass
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  CLUS_1                          17                            92
  CLUS_2                          10                            72
  CLUS_3                          22                           113
  CLUS_4                           9                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q32.1) MUTATED        7      5      7     18      6     20
  DEL PEAK  4(2Q32.1) WILD-TYPE     54     61     73     93     44     46
D40V7, multiclass
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  CLUS_1                           7                            54
  CLUS_2                           5                            61
  CLUS_3                           7                            73
  CLUS_4                          18                            93
  CLUS_5                           6                            44
  CLUS_6                          20                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q32.1) MUTATED       24     10     29
  DEL PEAK  4(2Q32.1) WILD-TYPE    219     72     80
D40V8, multiclass
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  CLUS_1                          24                           219
  CLUS_2                          10                            72
  CLUS_3                          29                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q32.1) MUTATED       27     14      8
  DEL PEAK  4(2Q32.1) WILD-TYPE    120    107     65
D40V9, multiclass
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  CLUS_1                          27                           120
  CLUS_2                          14                           107
  CLUS_3                           8                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q32.1) MUTATED       12      6      6     13     12
  DEL PEAK  4(2Q32.1) WILD-TYPE     91     66     38     49     48
D40V10, multiclass
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  CLUS_1                          12                            91
  CLUS_2                           6                            66
  CLUS_3                           6                            38
  CLUS_4                          13                            49
  CLUS_5                          12                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK  5(2Q33.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q33.3) MUTATED       43      4      2      0
  DEL PEAK  5(2Q33.3) WILD-TYPE    191    149     49      3
D41V1, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                          43                           191
  CLUS_2                           4                           149
  CLUS_3                           2                            49
  CLUS_4                           0                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q33.3) MUTATED        6     13      2     17      8
  DEL PEAK  5(2Q33.3) WILD-TYPE     39     97     49     83     79
D41V2, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                           6                            39
  CLUS_2                          13                            97
  CLUS_3                           2                            49
  CLUS_4                          17                            83
  CLUS_5                           8                            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q33.3) MUTATED        3      8      9      5     12
  DEL PEAK  5(2Q33.3) WILD-TYPE     27     84     73     88     47
D41V3, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                           3                            27
  CLUS_2                           8                            84
  CLUS_3                           9                            73
  CLUS_4                           5                            88
  CLUS_5                          12                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q33.3) MUTATED       18      7      7      5
  DEL PEAK  5(2Q33.3) WILD-TYPE    122     51     71     75
D41V4, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                          18                           122
  CLUS_2                           7                            51
  CLUS_3                           7                            71
  CLUS_4                           5                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q33.3) MUTATED       16      7      8     11      4
  DEL PEAK  5(2Q33.3) WILD-TYPE     78     87     85     71     46
D41V5, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                          16                            78
  CLUS_2                           7                            87
  CLUS_3                           8                            85
  CLUS_4                          11                            71
  CLUS_5                           4                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q33.3) MUTATED       16      4     16     10
  DEL PEAK  5(2Q33.3) WILD-TYPE     93     78    119     77
D41V6, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                          16                            93
  CLUS_2                           4                            78
  CLUS_3                          16                           119
  CLUS_4                          10                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q33.3) MUTATED        7      6      6      9      5     15
  DEL PEAK  5(2Q33.3) WILD-TYPE     54     60     74    102     45     51
D41V7, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                           7                            54
  CLUS_2                           6                            60
  CLUS_3                           6                            74
  CLUS_4                           9                           102
  CLUS_5                           5                            45
  CLUS_6                          15                            51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q33.3) MUTATED       25      3     20
  DEL PEAK  5(2Q33.3) WILD-TYPE    218     79     89
D41V8, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                          25                           218
  CLUS_2                           3                            79
  CLUS_3                          20                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q33.3) MUTATED       16     11     10
  DEL PEAK  5(2Q33.3) WILD-TYPE    131    110     63
D41V9, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                          16                           131
  CLUS_2                          11                           110
  CLUS_3                          10                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q33.3) MUTATED       10      3      7      9      8
  DEL PEAK  5(2Q33.3) WILD-TYPE     93     69     37     53     52
D41V10, multiclass
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  CLUS_1                          10                            93
  CLUS_2                           3                            69
  CLUS_3                           7                            37
  CLUS_4                           9                            53
  CLUS_5                           8                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK  6(2Q37.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q37.2) MUTATED       66      3      3      0
  DEL PEAK  6(2Q37.2) WILD-TYPE    168    150     48      3
D42V1, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                          66                           168
  CLUS_2                           3                           150
  CLUS_3                           3                            48
  CLUS_4                           0                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q37.2) MUTATED       12     13      2     32      8
  DEL PEAK  6(2Q37.2) WILD-TYPE     33     97     49     68     79
D42V2, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                          12                            33
  CLUS_2                          13                            97
  CLUS_3                           2                            49
  CLUS_4                          32                            68
  CLUS_5                           8                            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q37.2) MUTATED        3     19     15      9     12
  DEL PEAK  6(2Q37.2) WILD-TYPE     27     73     67     84     47
D42V3, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           3                            27
  CLUS_2                          19                            73
  CLUS_3                          15                            67
  CLUS_4                           9                            84
  CLUS_5                          12                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q37.2) MUTATED       29      9     11      9
  DEL PEAK  6(2Q37.2) WILD-TYPE    111     49     67     71
D42V4, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                          29                           111
  CLUS_2                           9                            49
  CLUS_3                          11                            67
  CLUS_4                           9                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q37.2) MUTATED       23     10     11     20      6
  DEL PEAK  6(2Q37.2) WILD-TYPE     71     84     82     62     44
D42V5, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                          23                            71
  CLUS_2                          10                            84
  CLUS_3                          11                            82
  CLUS_4                          20                            62
  CLUS_5                           6                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q37.2) MUTATED       21      8     29     12
  DEL PEAK  6(2Q37.2) WILD-TYPE     88     74    106     75
D42V6, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                          21                            88
  CLUS_2                           8                            74
  CLUS_3                          29                           106
  CLUS_4                          12                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(2Q37.2) MUTATED        7      6      9     13     11     25
  DEL PEAK  6(2Q37.2) WILD-TYPE     54     60     71     98     39     41
D42V7, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           7                            54
  CLUS_2                           6                            60
  CLUS_3                           9                            71
  CLUS_4                          13                            98
  CLUS_5                          11                            39
  CLUS_6                          25                            41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q37.2) MUTATED       32      6     33
  DEL PEAK  6(2Q37.2) WILD-TYPE    211     76     76
D42V8, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                          32                           211
  CLUS_2                           6                            76
  CLUS_3                          33                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q37.2) MUTATED       32     15     13
  DEL PEAK  6(2Q37.2) WILD-TYPE    115    106     60
D42V9, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                          32                           115
  CLUS_2                          15                           106
  CLUS_3                          13                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q37.2) MUTATED       15      5      9     18     13
  DEL PEAK  6(2Q37.2) WILD-TYPE     88     67     35     44     47
D42V10, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                          15                            88
  CLUS_2                           5                            67
  CLUS_3                           9                            35
  CLUS_4                          18                            44
  CLUS_5                          13                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK  7(3P26.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.1) MUTATED      114      6     20      3
  DEL PEAK  7(3P26.1) WILD-TYPE    120    147     31      0
D43V1, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                         114                           120
  CLUS_2                           6                           147
  CLUS_3                          20                            31
  CLUS_4                           3                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P26.1) MUTATED       13     30     10     58     18
  DEL PEAK  7(3P26.1) WILD-TYPE     32     80     41     42     69
D43V2, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          13                            32
  CLUS_2                          30                            80
  CLUS_3                          10                            41
  CLUS_4                          58                            42
  CLUS_5                          18                            69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P26.1) MUTATED       12     28     29     28     15
  DEL PEAK  7(3P26.1) WILD-TYPE     18     64     53     65     44
D43V3, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          12                            18
  CLUS_2                          28                            64
  CLUS_3                          29                            53
  CLUS_4                          28                            65
  CLUS_5                          15                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.1) MUTATED       51     12     28     21
  DEL PEAK  7(3P26.1) WILD-TYPE     89     46     50     59
D43V4, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          51                            89
  CLUS_2                          12                            46
  CLUS_3                          28                            50
  CLUS_4                          21                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P26.1) MUTATED       53     17     22     21     20
  DEL PEAK  7(3P26.1) WILD-TYPE     41     77     71     61     30
D43V5, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          53                            41
  CLUS_2                          17                            77
  CLUS_3                          22                            71
  CLUS_4                          21                            61
  CLUS_5                          20                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.1) MUTATED       31     14     56     32
  DEL PEAK  7(3P26.1) WILD-TYPE     78     68     79     55
D43V6, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          31                            78
  CLUS_2                          14                            68
  CLUS_3                          56                            79
  CLUS_4                          32                            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P26.1) MUTATED       21     18     24     25     12     40
  DEL PEAK  7(3P26.1) WILD-TYPE     40     48     56     86     38     26
D43V7, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          21                            40
  CLUS_2                          18                            48
  CLUS_3                          24                            56
  CLUS_4                          25                            86
  CLUS_5                          12                            38
  CLUS_6                          40                            26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.1) MUTATED       66     16     58
  DEL PEAK  7(3P26.1) WILD-TYPE    177     66     51
D43V8, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          66                           177
  CLUS_2                          16                            66
  CLUS_3                          58                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.1) MUTATED       60     31     20
  DEL PEAK  7(3P26.1) WILD-TYPE     87     90     53
D43V9, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          60                            87
  CLUS_2                          31                            90
  CLUS_3                          20                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P26.1) MUTATED       30     13     15     38     15
  DEL PEAK  7(3P26.1) WILD-TYPE     73     59     29     24     45
D43V10, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          30                            73
  CLUS_2                          13                            59
  CLUS_3                          15                            29
  CLUS_4                          38                            24
  CLUS_5                          15                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK  8(3P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P21.1) MUTATED      119      9     22      3
  DEL PEAK  8(3P21.1) WILD-TYPE    115    144     29      0
D44V1, multiclass
        clus
vv       DEL PEAK  8(3P21.1) MUTATED DEL PEAK  8(3P21.1) WILD-TYPE
  CLUS_1                         119                           115
  CLUS_2                           9                           144
  CLUS_3                          22                            29
  CLUS_4                           3                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P21.1) MUTATED       23     34     11     53     18
  DEL PEAK  8(3P21.1) WILD-TYPE     22     76     40     47     69
D44V2, multiclass
        clus
vv       DEL PEAK  8(3P21.1) MUTATED DEL PEAK  8(3P21.1) WILD-TYPE
  CLUS_1                          23                            22
  CLUS_2                          34                            76
  CLUS_3                          11                            40
  CLUS_4                          53                            47
  CLUS_5                          18                            69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P21.1) MUTATED       14     27     29     31     21
  DEL PEAK  8(3P21.1) WILD-TYPE     16     65     53     62     38
D44V3, multiclass
        clus
vv       DEL PEAK  8(3P21.1) MUTATED DEL PEAK  8(3P21.1) WILD-TYPE
  CLUS_1                          14                            16
  CLUS_2                          27                            65
  CLUS_3                          29                            53
  CLUS_4                          31                            62
  CLUS_5                          21                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P21.1) MUTATED       57     14     26     25
  DEL PEAK  8(3P21.1) WILD-TYPE     83     44     52     55
D44V4, multiclass
        clus
vv       DEL PEAK  8(3P21.1) MUTATED DEL PEAK  8(3P21.1) WILD-TYPE
  CLUS_1                          57                            83
  CLUS_2                          14                            44
  CLUS_3                          26                            52
  CLUS_4                          25                            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P21.1) MUTATED       48     21     25     27     19
  DEL PEAK  8(3P21.1) WILD-TYPE     46     73     68     55     31
D44V5, multiclass
        clus
vv       DEL PEAK  8(3P21.1) MUTATED DEL PEAK  8(3P21.1) WILD-TYPE
  CLUS_1                          48                            46
  CLUS_2                          21                            73
  CLUS_3                          25                            68
  CLUS_4                          27                            55
  CLUS_5                          19                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P21.1) MUTATED       35     15     58     32
  DEL PEAK  8(3P21.1) WILD-TYPE     74     67     77     55
D44V6, multiclass
        clus
vv       DEL PEAK  8(3P21.1) MUTATED DEL PEAK  8(3P21.1) WILD-TYPE
  CLUS_1                          35                            74
  CLUS_2                          15                            67
  CLUS_3                          58                            77
  CLUS_4                          32                            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P21.1) MUTATED       23     19     29     30     14     35
  DEL PEAK  8(3P21.1) WILD-TYPE     38     47     51     81     36     31
D44V7, multiclass
        clus
vv       DEL PEAK  8(3P21.1) MUTATED DEL PEAK  8(3P21.1) WILD-TYPE
  CLUS_1                          23                            38
  CLUS_2                          19                            47
  CLUS_3                          29                            51
  CLUS_4                          30                            81
  CLUS_5                          14                            36
  CLUS_6                          35                            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P21.1) MUTATED       78     17     55
  DEL PEAK  8(3P21.1) WILD-TYPE    165     65     54
D44V8, multiclass
        clus
vv       DEL PEAK  8(3P21.1) MUTATED DEL PEAK  8(3P21.1) WILD-TYPE
  CLUS_1                          78                           165
  CLUS_2                          17                            65
  CLUS_3                          55                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P21.1) MUTATED       64     33     22
  DEL PEAK  8(3P21.1) WILD-TYPE     83     88     51
D44V9, multiclass
        clus
vv       DEL PEAK  8(3P21.1) MUTATED DEL PEAK  8(3P21.1) WILD-TYPE
  CLUS_1                          64                            83
  CLUS_2                          33                            88
  CLUS_3                          22                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P21.1) MUTATED       34     15     18     34     18
  DEL PEAK  8(3P21.1) WILD-TYPE     69     57     26     28     42
D44V10, multiclass
        clus
vv       DEL PEAK  8(3P21.1) MUTATED DEL PEAK  8(3P21.1) WILD-TYPE
  CLUS_1                          34                            69
  CLUS_2                          15                            57
  CLUS_3                          18                            26
  CLUS_4                          34                            28
  CLUS_5                          18                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK  9(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P14.2) MUTATED      118     16     20      3
  DEL PEAK  9(3P14.2) WILD-TYPE    116    137     31      0
D45V1, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                         118                           116
  CLUS_2                          16                           137
  CLUS_3                          20                            31
  CLUS_4                           3                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P14.2) MUTATED       18     38     16     58     14
  DEL PEAK  9(3P14.2) WILD-TYPE     27     72     35     42     73
D45V2, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          18                            27
  CLUS_2                          38                            72
  CLUS_3                          16                            35
  CLUS_4                          58                            42
  CLUS_5                          14                            73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P14.2) MUTATED       14     28     30     28     21
  DEL PEAK  9(3P14.2) WILD-TYPE     16     64     52     65     38
D45V3, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          14                            16
  CLUS_2                          28                            64
  CLUS_3                          30                            52
  CLUS_4                          28                            65
  CLUS_5                          21                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P14.2) MUTATED       59     16     21     25
  DEL PEAK  9(3P14.2) WILD-TYPE     81     42     57     55
D45V4, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          59                            81
  CLUS_2                          16                            42
  CLUS_3                          21                            57
  CLUS_4                          25                            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P14.2) MUTATED       52     15     30     28     21
  DEL PEAK  9(3P14.2) WILD-TYPE     42     79     63     54     29
D45V5, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          52                            42
  CLUS_2                          15                            79
  CLUS_3                          30                            63
  CLUS_4                          28                            54
  CLUS_5                          21                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P14.2) MUTATED       34     14     62     36
  DEL PEAK  9(3P14.2) WILD-TYPE     75     68     73     51
D45V6, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          34                            75
  CLUS_2                          14                            68
  CLUS_3                          62                            73
  CLUS_4                          36                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3P14.2) MUTATED       21     23     27     26     17     40
  DEL PEAK  9(3P14.2) WILD-TYPE     40     43     53     85     33     26
D45V7, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          21                            40
  CLUS_2                          23                            43
  CLUS_3                          27                            53
  CLUS_4                          26                            85
  CLUS_5                          17                            33
  CLUS_6                          40                            26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED       78     16     60
  DEL PEAK  9(3P14.2) WILD-TYPE    165     66     49
D45V8, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          78                           165
  CLUS_2                          16                            66
  CLUS_3                          60                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P14.2) MUTATED       66     28     28
  DEL PEAK  9(3P14.2) WILD-TYPE     81     93     45
D45V9, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          66                            81
  CLUS_2                          28                            93
  CLUS_3                          28                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3P14.2) MUTATED       32     11     20     36     23
  DEL PEAK  9(3P14.2) WILD-TYPE     71     61     24     26     37
D45V10, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          32                            71
  CLUS_2                          11                            61
  CLUS_3                          20                            24
  CLUS_4                          36                            26
  CLUS_5                          23                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 10(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q26.31) MUTATED       40      1      8      0
  DEL PEAK 10(3Q26.31) WILD-TYPE    194    152     43      3
D46V1, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           40                            194
  CLUS_2                            1                            152
  CLUS_3                            8                             43
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3Q26.31) MUTATED        2     11      2     28      2
  DEL PEAK 10(3Q26.31) WILD-TYPE     43     99     49     72     85
D46V2, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                            2                             43
  CLUS_2                           11                             99
  CLUS_3                            2                             49
  CLUS_4                           28                             72
  CLUS_5                            2                             85
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3Q26.31) MUTATED        2     12     13      9      5
  DEL PEAK 10(3Q26.31) WILD-TYPE     28     80     69     84     54
D46V3, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                           12                             80
  CLUS_3                           13                             69
  CLUS_4                            9                             84
  CLUS_5                            5                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q26.31) MUTATED       16      7     12      6
  DEL PEAK 10(3Q26.31) WILD-TYPE    124     51     66     74
D46V4, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           16                            124
  CLUS_2                            7                             51
  CLUS_3                           12                             66
  CLUS_4                            6                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3Q26.31) MUTATED       25      4      6      2     11
  DEL PEAK 10(3Q26.31) WILD-TYPE     69     90     87     80     39
D46V5, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           25                             69
  CLUS_2                            4                             90
  CLUS_3                            6                             87
  CLUS_4                            2                             80
  CLUS_5                           11                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q26.31) MUTATED        2      6     24     16
  DEL PEAK 10(3Q26.31) WILD-TYPE    107     76    111     71
D46V6, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                            2                            107
  CLUS_2                            6                             76
  CLUS_3                           24                            111
  CLUS_4                           16                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(3Q26.31) MUTATED        8      1     11      6      3     19
  DEL PEAK 10(3Q26.31) WILD-TYPE     53     65     69    105     47     47
D46V7, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                            8                             53
  CLUS_2                            1                             65
  CLUS_3                           11                             69
  CLUS_4                            6                            105
  CLUS_5                            3                             47
  CLUS_6                           19                             47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q26.31) MUTATED       20      4     24
  DEL PEAK 10(3Q26.31) WILD-TYPE    223     78     85
D46V8, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           20                            223
  CLUS_2                            4                             78
  CLUS_3                           24                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q26.31) MUTATED       23      8      7
  DEL PEAK 10(3Q26.31) WILD-TYPE    124    113     66
D46V9, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           23                            124
  CLUS_2                            8                            113
  CLUS_3                            7                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(3Q26.31) MUTATED       10      4      5     15      4
  DEL PEAK 10(3Q26.31) WILD-TYPE     93     68     39     47     56
D46V10, multiclass
        clus
vv       DEL PEAK 10(3Q26.31) MUTATED DEL PEAK 10(3Q26.31) WILD-TYPE
  CLUS_1                           10                             93
  CLUS_2                            4                             68
  CLUS_3                            5                             39
  CLUS_4                           15                             47
  CLUS_5                            4                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 11(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P16.3) MUTATED      143     11     14      1
  DEL PEAK 11(4P16.3) WILD-TYPE     91    142     37      2
D47V1, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                         143                            91
  CLUS_2                          11                           142
  CLUS_3                          14                            37
  CLUS_4                           1                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4P16.3) MUTATED       20     34      9     58     29
  DEL PEAK 11(4P16.3) WILD-TYPE     25     76     42     42     58
D47V2, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          20                            25
  CLUS_2                          34                            76
  CLUS_3                           9                            42
  CLUS_4                          58                            42
  CLUS_5                          29                            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4P16.3) MUTATED        9     31     33     38     27
  DEL PEAK 11(4P16.3) WILD-TYPE     21     61     49     55     32
D47V3, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                           9                            21
  CLUS_2                          31                            61
  CLUS_3                          33                            49
  CLUS_4                          38                            55
  CLUS_5                          27                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P16.3) MUTATED       61     19     28     30
  DEL PEAK 11(4P16.3) WILD-TYPE     79     39     50     50
D47V4, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          61                            79
  CLUS_2                          19                            39
  CLUS_3                          28                            50
  CLUS_4                          30                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4P16.3) MUTATED       59     29     30     24     17
  DEL PEAK 11(4P16.3) WILD-TYPE     35     65     63     58     33
D47V5, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          59                            35
  CLUS_2                          29                            65
  CLUS_3                          30                            63
  CLUS_4                          24                            58
  CLUS_5                          17                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4P16.3) MUTATED       34     28     67     30
  DEL PEAK 11(4P16.3) WILD-TYPE     75     54     68     57
D47V6, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          34                            75
  CLUS_2                          28                            54
  CLUS_3                          67                            68
  CLUS_4                          30                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4P16.3) MUTATED       26     12     25     45     14     46
  DEL PEAK 11(4P16.3) WILD-TYPE     35     54     55     66     36     20
D47V7, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          26                            35
  CLUS_2                          12                            54
  CLUS_3                          25                            55
  CLUS_4                          45                            66
  CLUS_5                          14                            36
  CLUS_6                          46                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P16.3) MUTATED       71     27     70
  DEL PEAK 11(4P16.3) WILD-TYPE    172     55     39
D47V8, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          71                           172
  CLUS_2                          27                            55
  CLUS_3                          70                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4P16.3) MUTATED       65     54     15
  DEL PEAK 11(4P16.3) WILD-TYPE     82     67     58
D47V9, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          65                            82
  CLUS_2                          54                            67
  CLUS_3                          15                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4P16.3) MUTATED       39     25      7     45     18
  DEL PEAK 11(4P16.3) WILD-TYPE     64     47     37     17     42
D47V10, multiclass
        clus
vv       DEL PEAK 11(4P16.3) MUTATED DEL PEAK 11(4P16.3) WILD-TYPE
  CLUS_1                          39                            64
  CLUS_2                          25                            47
  CLUS_3                           7                            37
  CLUS_4                          45                            17
  CLUS_5                          18                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 12(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED      166     12     14      1
  DEL PEAK 12(4Q22.1) WILD-TYPE     68    141     37      2
D48V1, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                         166                            68
  CLUS_2                          12                           141
  CLUS_3                          14                            37
  CLUS_4                           1                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q22.1) MUTATED       26     48      9     64     25
  DEL PEAK 12(4Q22.1) WILD-TYPE     19     62     42     36     62
D48V2, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          26                            19
  CLUS_2                          48                            62
  CLUS_3                           9                            42
  CLUS_4                          64                            36
  CLUS_5                          25                            62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q22.1) MUTATED       14     41     35     37     25
  DEL PEAK 12(4Q22.1) WILD-TYPE     16     51     47     56     34
D48V3, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          14                            16
  CLUS_2                          41                            51
  CLUS_3                          35                            47
  CLUS_4                          37                            56
  CLUS_5                          25                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED       72     21     30     29
  DEL PEAK 12(4Q22.1) WILD-TYPE     68     37     48     51
D48V4, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          72                            68
  CLUS_2                          21                            37
  CLUS_3                          30                            48
  CLUS_4                          29                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q22.1) MUTATED       58     29     37     33     22
  DEL PEAK 12(4Q22.1) WILD-TYPE     36     65     56     49     28
D48V5, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          58                            36
  CLUS_2                          29                            65
  CLUS_3                          37                            56
  CLUS_4                          33                            49
  CLUS_5                          22                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q22.1) MUTATED       46     25     70     38
  DEL PEAK 12(4Q22.1) WILD-TYPE     63     57     65     49
D48V6, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          46                            63
  CLUS_2                          25                            57
  CLUS_3                          70                            65
  CLUS_4                          38                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(4Q22.1) MUTATED       28     22     34     42     21     42
  DEL PEAK 12(4Q22.1) WILD-TYPE     33     44     46     69     29     24
D48V7, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          28                            33
  CLUS_2                          22                            44
  CLUS_3                          34                            46
  CLUS_4                          42                            69
  CLUS_5                          21                            29
  CLUS_6                          42                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q22.1) MUTATED       94     28     67
  DEL PEAK 12(4Q22.1) WILD-TYPE    149     54     42
D48V8, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          94                           149
  CLUS_2                          28                            54
  CLUS_3                          67                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q22.1) MUTATED       67     49     30
  DEL PEAK 12(4Q22.1) WILD-TYPE     80     72     43
D48V9, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          67                            80
  CLUS_2                          49                            72
  CLUS_3                          30                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q22.1) MUTATED       39     24     18     40     25
  DEL PEAK 12(4Q22.1) WILD-TYPE     64     48     26     22     35
D48V10, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          39                            64
  CLUS_2                          24                            48
  CLUS_3                          18                            26
  CLUS_4                          40                            22
  CLUS_5                          25                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 13(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q35.1) MUTATED      176     12     15      1
  DEL PEAK 13(4Q35.1) WILD-TYPE     58    141     36      2
D49V1, multiclass
        clus
vv       DEL PEAK 13(4Q35.1) MUTATED DEL PEAK 13(4Q35.1) WILD-TYPE
  CLUS_1                         176                            58
  CLUS_2                          12                           141
  CLUS_3                          15                            36
  CLUS_4                           1                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4Q35.1) MUTATED       30     45     10     69     30
  DEL PEAK 13(4Q35.1) WILD-TYPE     15     65     41     31     57
D49V2, multiclass
        clus
vv       DEL PEAK 13(4Q35.1) MUTATED DEL PEAK 13(4Q35.1) WILD-TYPE
  CLUS_1                          30                            15
  CLUS_2                          45                            65
  CLUS_3                          10                            41
  CLUS_4                          69                            31
  CLUS_5                          30                            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4Q35.1) MUTATED       15     46     39     40     25
  DEL PEAK 13(4Q35.1) WILD-TYPE     15     46     43     53     34
D49V3, multiclass
        clus
vv       DEL PEAK 13(4Q35.1) MUTATED DEL PEAK 13(4Q35.1) WILD-TYPE
  CLUS_1                          15                            15
  CLUS_2                          46                            46
  CLUS_3                          39                            43
  CLUS_4                          40                            53
  CLUS_5                          25                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q35.1) MUTATED       77     18     39     31
  DEL PEAK 13(4Q35.1) WILD-TYPE     63     40     39     49
D49V4, multiclass
        clus
vv       DEL PEAK 13(4Q35.1) MUTATED DEL PEAK 13(4Q35.1) WILD-TYPE
  CLUS_1                          77                            63
  CLUS_2                          18                            40
  CLUS_3                          39                            39
  CLUS_4                          31                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4Q35.1) MUTATED       68     29     35     42     19
  DEL PEAK 13(4Q35.1) WILD-TYPE     26     65     58     40     31
D49V5, multiclass
        clus
vv       DEL PEAK 13(4Q35.1) MUTATED DEL PEAK 13(4Q35.1) WILD-TYPE
  CLUS_1                          68                            26
  CLUS_2                          29                            65
  CLUS_3                          35                            58
  CLUS_4                          42                            40
  CLUS_5                          19                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4Q35.1) MUTATED       52     27     81     33
  DEL PEAK 13(4Q35.1) WILD-TYPE     57     55     54     54
D49V6, multiclass
        clus
vv       DEL PEAK 13(4Q35.1) MUTATED DEL PEAK 13(4Q35.1) WILD-TYPE
  CLUS_1                          52                            57
  CLUS_2                          27                            55
  CLUS_3                          81                            54
  CLUS_4                          33                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(4Q35.1) MUTATED       29     22     35     42     27     47
  DEL PEAK 13(4Q35.1) WILD-TYPE     32     44     45     69     23     19
D49V7, multiclass
        clus
vv       DEL PEAK 13(4Q35.1) MUTATED DEL PEAK 13(4Q35.1) WILD-TYPE
  CLUS_1                          29                            32
  CLUS_2                          22                            44
  CLUS_3                          35                            45
  CLUS_4                          42                            69
  CLUS_5                          27                            23
  CLUS_6                          47                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q35.1) MUTATED      101     26     75
  DEL PEAK 13(4Q35.1) WILD-TYPE    142     56     34
D49V8, multiclass
        clus
vv       DEL PEAK 13(4Q35.1) MUTATED DEL PEAK 13(4Q35.1) WILD-TYPE
  CLUS_1                         101                           142
  CLUS_2                          26                            56
  CLUS_3                          75                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4Q35.1) MUTATED       84     51     27
  DEL PEAK 13(4Q35.1) WILD-TYPE     63     70     46
D49V9, multiclass
        clus
vv       DEL PEAK 13(4Q35.1) MUTATED DEL PEAK 13(4Q35.1) WILD-TYPE
  CLUS_1                          84                            63
  CLUS_2                          51                            70
  CLUS_3                          27                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(4Q35.1) MUTATED       49     22     16     48     27
  DEL PEAK 13(4Q35.1) WILD-TYPE     54     50     28     14     33
D49V10, multiclass
        clus
vv       DEL PEAK 13(4Q35.1) MUTATED DEL PEAK 13(4Q35.1) WILD-TYPE
  CLUS_1                          49                            54
  CLUS_2                          22                            50
  CLUS_3                          16                            28
  CLUS_4                          48                            14
  CLUS_5                          27                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 14(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q12.1) MUTATED      150      3     15      2
  DEL PEAK 14(5Q12.1) WILD-TYPE     84    150     36      1
D50V1, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                         150                            84
  CLUS_2                           3                           150
  CLUS_3                          15                            36
  CLUS_4                           2                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q12.1) MUTATED       19     38      5     75     19
  DEL PEAK 14(5Q12.1) WILD-TYPE     26     72     46     25     68
D50V2, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          19                            26
  CLUS_2                          38                            72
  CLUS_3                           5                            46
  CLUS_4                          75                            25
  CLUS_5                          19                            68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q12.1) MUTATED       11     36     36     24     21
  DEL PEAK 14(5Q12.1) WILD-TYPE     19     56     46     69     38
D50V3, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          11                            19
  CLUS_2                          36                            56
  CLUS_3                          36                            46
  CLUS_4                          24                            69
  CLUS_5                          21                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q12.1) MUTATED       65     14     32     17
  DEL PEAK 14(5Q12.1) WILD-TYPE     75     44     46     63
D50V4, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          65                            75
  CLUS_2                          14                            44
  CLUS_3                          32                            46
  CLUS_4                          17                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q12.1) MUTATED       74     12     25     28     21
  DEL PEAK 14(5Q12.1) WILD-TYPE     20     82     68     54     29
D50V5, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          74                            20
  CLUS_2                          12                            82
  CLUS_3                          25                            68
  CLUS_4                          28                            54
  CLUS_5                          21                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q12.1) MUTATED       46      7     78     29
  DEL PEAK 14(5Q12.1) WILD-TYPE     63     75     57     58
D50V6, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          46                            63
  CLUS_2                           7                            75
  CLUS_3                          78                            57
  CLUS_4                          29                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q12.1) MUTATED       27     19     26     20     23     52
  DEL PEAK 14(5Q12.1) WILD-TYPE     34     47     54     91     27     14
D50V7, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          27                            34
  CLUS_2                          19                            47
  CLUS_3                          26                            54
  CLUS_4                          20                            91
  CLUS_5                          23                            27
  CLUS_6                          52                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q12.1) MUTATED       77     11     79
  DEL PEAK 14(5Q12.1) WILD-TYPE    166     71     30
D50V8, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          77                           166
  CLUS_2                          11                            71
  CLUS_3                          79                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q12.1) MUTATED       76     35     28
  DEL PEAK 14(5Q12.1) WILD-TYPE     71     86     45
D50V9, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          76                            71
  CLUS_2                          35                            86
  CLUS_3                          28                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q12.1) MUTATED       38      9     17     53     22
  DEL PEAK 14(5Q12.1) WILD-TYPE     65     63     27      9     38
D50V10, multiclass
        clus
vv       DEL PEAK 14(5Q12.1) MUTATED DEL PEAK 14(5Q12.1) WILD-TYPE
  CLUS_1                          38                            65
  CLUS_2                           9                            63
  CLUS_3                          17                            27
  CLUS_4                          53                             9
  CLUS_5                          22                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 15(5Q23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.2) MUTATED      140      3     14      1
  DEL PEAK 15(5Q23.2) WILD-TYPE     94    150     37      2
D51V1, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                         140                            94
  CLUS_2                           3                           150
  CLUS_3                          14                            37
  CLUS_4                           1                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(5Q23.2) MUTATED       17     34      7     72     15
  DEL PEAK 15(5Q23.2) WILD-TYPE     28     76     44     28     72
D51V2, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          17                            28
  CLUS_2                          34                            76
  CLUS_3                           7                            44
  CLUS_4                          72                            28
  CLUS_5                          15                            72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(5Q23.2) MUTATED       11     32     37     24     19
  DEL PEAK 15(5Q23.2) WILD-TYPE     19     60     45     69     40
D51V3, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          11                            19
  CLUS_2                          32                            60
  CLUS_3                          37                            45
  CLUS_4                          24                            69
  CLUS_5                          19                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.2) MUTATED       62     12     31     18
  DEL PEAK 15(5Q23.2) WILD-TYPE     78     46     47     62
D51V4, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          62                            78
  CLUS_2                          12                            46
  CLUS_3                          31                            47
  CLUS_4                          18                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(5Q23.2) MUTATED       71     10     22     28     19
  DEL PEAK 15(5Q23.2) WILD-TYPE     23     84     71     54     31
D51V5, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          71                            23
  CLUS_2                          10                            84
  CLUS_3                          22                            71
  CLUS_4                          28                            54
  CLUS_5                          19                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.2) MUTATED       41      6     75     28
  DEL PEAK 15(5Q23.2) WILD-TYPE     68     76     60     59
D51V6, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          41                            68
  CLUS_2                           6                            76
  CLUS_3                          75                            60
  CLUS_4                          28                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(5Q23.2) MUTATED       26     13     28     17     20     51
  DEL PEAK 15(5Q23.2) WILD-TYPE     35     53     52     94     30     15
D51V7, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          26                            35
  CLUS_2                          13                            53
  CLUS_3                          28                            52
  CLUS_4                          17                            94
  CLUS_5                          20                            30
  CLUS_6                          51                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q23.2) MUTATED       75      9     71
  DEL PEAK 15(5Q23.2) WILD-TYPE    168     73     38
D51V8, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          75                           168
  CLUS_2                           9                            73
  CLUS_3                          71                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q23.2) MUTATED       78     30     20
  DEL PEAK 15(5Q23.2) WILD-TYPE     69     91     53
D51V9, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          78                            69
  CLUS_2                          30                            91
  CLUS_3                          20                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(5Q23.2) MUTATED       40      8     13     46     21
  DEL PEAK 15(5Q23.2) WILD-TYPE     63     64     31     16     39
D51V10, multiclass
        clus
vv       DEL PEAK 15(5Q23.2) MUTATED DEL PEAK 15(5Q23.2) WILD-TYPE
  CLUS_1                          40                            63
  CLUS_2                           8                            64
  CLUS_3                          13                            31
  CLUS_4                          46                            16
  CLUS_5                          21                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 16(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED       94     11     10      0
  DEL PEAK 16(6P25.3) WILD-TYPE    140    142     41      3
D52V1, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          94                           140
  CLUS_2                          11                           142
  CLUS_3                          10                            41
  CLUS_4                           0                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6P25.3) MUTATED       18     31      5     41     13
  DEL PEAK 16(6P25.3) WILD-TYPE     27     79     46     59     74
D52V2, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          18                            27
  CLUS_2                          31                            79
  CLUS_3                           5                            46
  CLUS_4                          41                            59
  CLUS_5                          13                            74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6P25.3) MUTATED        8     26     23     14     18
  DEL PEAK 16(6P25.3) WILD-TYPE     22     66     59     79     41
D52V3, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           8                            22
  CLUS_2                          26                            66
  CLUS_3                          23                            59
  CLUS_4                          14                            79
  CLUS_5                          18                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED       42     16     14     17
  DEL PEAK 16(6P25.3) WILD-TYPE     98     42     64     63
D52V4, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          42                            98
  CLUS_2                          16                            42
  CLUS_3                          14                            64
  CLUS_4                          17                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6P25.3) MUTATED       37      9     22     30      7
  DEL PEAK 16(6P25.3) WILD-TYPE     57     85     71     52     43
D52V5, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          37                            57
  CLUS_2                           9                            85
  CLUS_3                          22                            71
  CLUS_4                          30                            52
  CLUS_5                           7                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED       33     10     47     15
  DEL PEAK 16(6P25.3) WILD-TYPE     76     72     88     72
D52V6, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          33                            76
  CLUS_2                          10                            72
  CLUS_3                          47                            88
  CLUS_4                          15                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(6P25.3) MUTATED       13     12     23     18     17     30
  DEL PEAK 16(6P25.3) WILD-TYPE     48     54     57     93     33     36
D52V7, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          13                            48
  CLUS_2                          12                            54
  CLUS_3                          23                            57
  CLUS_4                          18                            93
  CLUS_5                          17                            33
  CLUS_6                          30                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       55     11     47
  DEL PEAK 16(6P25.3) WILD-TYPE    188     71     62
D52V8, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          55                           188
  CLUS_2                          11                            71
  CLUS_3                          47                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       52     20     21
  DEL PEAK 16(6P25.3) WILD-TYPE     95    101     52
D52V9, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          52                            95
  CLUS_2                          20                           101
  CLUS_3                          21                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6P25.3) MUTATED       25      9     16     24     19
  DEL PEAK 16(6P25.3) WILD-TYPE     78     63     28     38     41
D52V10, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          25                            78
  CLUS_2                           9                            63
  CLUS_3                          16                            28
  CLUS_4                          24                            38
  CLUS_5                          19                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 17(6Q14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q14.1) MUTATED       67      8     12      2
  DEL PEAK 17(6Q14.1) WILD-TYPE    167    145     39      1
D53V1, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          67                           167
  CLUS_2                           8                           145
  CLUS_3                          12                            39
  CLUS_4                           2                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(6Q14.1) MUTATED       18     19      5     28      9
  DEL PEAK 17(6Q14.1) WILD-TYPE     27     91     46     72     78
D53V2, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          18                            27
  CLUS_2                          19                            91
  CLUS_3                           5                            46
  CLUS_4                          28                            72
  CLUS_5                           9                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(6Q14.1) MUTATED        7     17     20     11     14
  DEL PEAK 17(6Q14.1) WILD-TYPE     23     75     62     82     45
D53V3, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                           7                            23
  CLUS_2                          17                            75
  CLUS_3                          20                            62
  CLUS_4                          11                            82
  CLUS_5                          14                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q14.1) MUTATED       35      8     12     14
  DEL PEAK 17(6Q14.1) WILD-TYPE    105     50     66     66
D53V4, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          35                           105
  CLUS_2                           8                            50
  CLUS_3                          12                            66
  CLUS_4                          14                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(6Q14.1) MUTATED       25      7     16     30      6
  DEL PEAK 17(6Q14.1) WILD-TYPE     69     87     77     52     44
D53V5, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          25                            69
  CLUS_2                           7                            87
  CLUS_3                          16                            77
  CLUS_4                          30                            52
  CLUS_5                           6                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q14.1) MUTATED       35      6     30     13
  DEL PEAK 17(6Q14.1) WILD-TYPE     74     76    105     74
D53V6, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          35                            74
  CLUS_2                           6                            76
  CLUS_3                          30                           105
  CLUS_4                          13                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(6Q14.1) MUTATED        8     10     21     18     14     16
  DEL PEAK 17(6Q14.1) WILD-TYPE     53     56     59     93     36     50
D53V7, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                           8                            53
  CLUS_2                          10                            56
  CLUS_3                          21                            59
  CLUS_4                          18                            93
  CLUS_5                          14                            36
  CLUS_6                          16                            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q14.1) MUTATED       50      8     29
  DEL PEAK 17(6Q14.1) WILD-TYPE    193     74     80
D53V8, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          50                           193
  CLUS_2                           8                            74
  CLUS_3                          29                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q14.1) MUTATED       38     14     13
  DEL PEAK 17(6Q14.1) WILD-TYPE    109    107     60
D53V9, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          38                           109
  CLUS_2                          14                           107
  CLUS_3                          13                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(6Q14.1) MUTATED       22      8      8     14     13
  DEL PEAK 17(6Q14.1) WILD-TYPE     81     64     36     48     47
D53V10, multiclass
        clus
vv       DEL PEAK 17(6Q14.1) MUTATED DEL PEAK 17(6Q14.1) WILD-TYPE
  CLUS_1                          22                            81
  CLUS_2                           8                            64
  CLUS_3                           8                            36
  CLUS_4                          14                            48
  CLUS_5                          13                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 18(6Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6Q24.3) MUTATED       61      5     11      1
  DEL PEAK 18(6Q24.3) WILD-TYPE    173    148     40      2
D54V1, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          61                           173
  CLUS_2                           5                           148
  CLUS_3                          11                            40
  CLUS_4                           1                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(6Q24.3) MUTATED       14     14      3     27     10
  DEL PEAK 18(6Q24.3) WILD-TYPE     31     96     48     73     77
D54V2, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          14                            31
  CLUS_2                          14                            96
  CLUS_3                           3                            48
  CLUS_4                          27                            73
  CLUS_5                          10                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(6Q24.3) MUTATED        4     14     16     11     12
  DEL PEAK 18(6Q24.3) WILD-TYPE     26     78     66     82     47
D54V3, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                          14                            78
  CLUS_3                          16                            66
  CLUS_4                          11                            82
  CLUS_5                          12                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6Q24.3) MUTATED       27      7     11     12
  DEL PEAK 18(6Q24.3) WILD-TYPE    113     51     67     68
D54V4, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          27                           113
  CLUS_2                           7                            51
  CLUS_3                          11                            67
  CLUS_4                          12                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(6Q24.3) MUTATED       26      6     12     22      7
  DEL PEAK 18(6Q24.3) WILD-TYPE     68     88     81     60     43
D54V5, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          26                            68
  CLUS_2                           6                            88
  CLUS_3                          12                            81
  CLUS_4                          22                            60
  CLUS_5                           7                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(6Q24.3) MUTATED       26      4     31     12
  DEL PEAK 18(6Q24.3) WILD-TYPE     83     78    104     75
D54V6, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          26                            83
  CLUS_2                           4                            78
  CLUS_3                          31                           104
  CLUS_4                          12                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(6Q24.3) MUTATED        8      6     15     16     12     17
  DEL PEAK 18(6Q24.3) WILD-TYPE     53     60     65     95     38     49
D54V7, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                           8                            53
  CLUS_2                           6                            60
  CLUS_3                          15                            65
  CLUS_4                          16                            95
  CLUS_5                          12                            38
  CLUS_6                          17                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6Q24.3) MUTATED       42      7     25
  DEL PEAK 18(6Q24.3) WILD-TYPE    201     75     84
D54V8, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          42                           201
  CLUS_2                           7                            75
  CLUS_3                          25                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(6Q24.3) MUTATED       34     13     10
  DEL PEAK 18(6Q24.3) WILD-TYPE    113    108     63
D54V9, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          34                           113
  CLUS_2                          13                           108
  CLUS_3                          10                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(6Q24.3) MUTATED       19      5      5     15     13
  DEL PEAK 18(6Q24.3) WILD-TYPE     84     67     39     47     47
D54V10, multiclass
        clus
vv       DEL PEAK 18(6Q24.3) MUTATED DEL PEAK 18(6Q24.3) WILD-TYPE
  CLUS_1                          19                            84
  CLUS_2                           5                            67
  CLUS_3                           5                            39
  CLUS_4                          15                            47
  CLUS_5                          13                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 19(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(6Q26) MUTATED       77      7     17      1
  DEL PEAK 19(6Q26) WILD-TYPE    157    146     34      2
D55V1, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        77                         157
  CLUS_2                         7                         146
  CLUS_3                        17                          34
  CLUS_4                         1                           2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(6Q26) MUTATED       18     21      7     31     14
  DEL PEAK 19(6Q26) WILD-TYPE     27     89     44     69     73
D55V2, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        18                          27
  CLUS_2                        21                          89
  CLUS_3                         7                          44
  CLUS_4                        31                          69
  CLUS_5                        14                          73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(6Q26) MUTATED        7     19     16     16     18
  DEL PEAK 19(6Q26) WILD-TYPE     23     73     66     77     41
D55V3, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                         7                          23
  CLUS_2                        19                          73
  CLUS_3                        16                          66
  CLUS_4                        16                          77
  CLUS_5                        18                          41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(6Q26) MUTATED       37      9     14     16
  DEL PEAK 19(6Q26) WILD-TYPE    103     49     64     64
D55V4, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        37                         103
  CLUS_2                         9                          49
  CLUS_3                        14                          64
  CLUS_4                        16                          64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(6Q26) MUTATED       30     10     23     28      5
  DEL PEAK 19(6Q26) WILD-TYPE     64     84     70     54     45
D55V5, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        30                          64
  CLUS_2                        10                          84
  CLUS_3                        23                          70
  CLUS_4                        28                          54
  CLUS_5                         5                          45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(6Q26) MUTATED       32      8     45     11
  DEL PEAK 19(6Q26) WILD-TYPE     77     74     90     76
D55V6, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        32                          77
  CLUS_2                         8                          74
  CLUS_3                        45                          90
  CLUS_4                        11                          76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(6Q26) MUTATED        8     13     24     17     14     24
  DEL PEAK 19(6Q26) WILD-TYPE     53     53     56     94     36     42
D55V7, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                         8                          53
  CLUS_2                        13                          53
  CLUS_3                        24                          56
  CLUS_4                        17                          94
  CLUS_5                        14                          36
  CLUS_6                        24                          42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6Q26) MUTATED       57      9     34
  DEL PEAK 19(6Q26) WILD-TYPE    186     73     75
D55V8, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        57                         186
  CLUS_2                         9                          73
  CLUS_3                        34                          75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(6Q26) MUTATED       40     17     19
  DEL PEAK 19(6Q26) WILD-TYPE    107    104     54
D55V9, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        40                         107
  CLUS_2                        17                         104
  CLUS_3                        19                          54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(6Q26) MUTATED       24      7     13     21     11
  DEL PEAK 19(6Q26) WILD-TYPE     79     65     31     41     49
D55V10, multiclass
        clus
vv       DEL PEAK 19(6Q26) MUTATED DEL PEAK 19(6Q26) WILD-TYPE
  CLUS_1                        24                          79
  CLUS_2                         7                          65
  CLUS_3                        13                          31
  CLUS_4                        21                          41
  CLUS_5                        11                          49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 20(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q31.1) MUTATED       62      7      1      1
  DEL PEAK 20(7Q31.1) WILD-TYPE    172    146     50      2
D56V1, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          62                           172
  CLUS_2                           7                           146
  CLUS_3                           1                            50
  CLUS_4                           1                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(7Q31.1) MUTATED       11     20      5     23      4
  DEL PEAK 20(7Q31.1) WILD-TYPE     34     90     46     77     83
D56V2, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          11                            34
  CLUS_2                          20                            90
  CLUS_3                           5                            46
  CLUS_4                          23                            77
  CLUS_5                           4                            83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(7Q31.1) MUTATED        5     17     14     16      7
  DEL PEAK 20(7Q31.1) WILD-TYPE     25     75     68     77     52
D56V3, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          17                            75
  CLUS_3                          14                            68
  CLUS_4                          16                            77
  CLUS_5                           7                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q31.1) MUTATED       23      6     17     13
  DEL PEAK 20(7Q31.1) WILD-TYPE    117     52     61     67
D56V4, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          23                           117
  CLUS_2                           6                            52
  CLUS_3                          17                            61
  CLUS_4                          13                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(7Q31.1) MUTATED       27     10     13     13      5
  DEL PEAK 20(7Q31.1) WILD-TYPE     67     84     80     69     45
D56V5, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          27                            67
  CLUS_2                          10                            84
  CLUS_3                          13                            80
  CLUS_4                          13                            69
  CLUS_5                           5                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(7Q31.1) MUTATED       18      9     32      9
  DEL PEAK 20(7Q31.1) WILD-TYPE     91     73    103     78
D56V6, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          18                            91
  CLUS_2                           9                            73
  CLUS_3                          32                           103
  CLUS_4                           9                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(7Q31.1) MUTATED        7      5     12     12     11     21
  DEL PEAK 20(7Q31.1) WILD-TYPE     54     61     68     99     39     45
D56V7, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                           7                            54
  CLUS_2                           5                            61
  CLUS_3                          12                            68
  CLUS_4                          12                            99
  CLUS_5                          11                            39
  CLUS_6                          21                            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q31.1) MUTATED       32     10     26
  DEL PEAK 20(7Q31.1) WILD-TYPE    211     72     83
D56V8, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          32                           211
  CLUS_2                          10                            72
  CLUS_3                          26                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(7Q31.1) MUTATED       32     15      9
  DEL PEAK 20(7Q31.1) WILD-TYPE    115    106     64
D56V9, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          32                           115
  CLUS_2                          15                           106
  CLUS_3                           9                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(7Q31.1) MUTATED       16      6      4     15     15
  DEL PEAK 20(7Q31.1) WILD-TYPE     87     66     40     47     45
D56V10, multiclass
        clus
vv       DEL PEAK 20(7Q31.1) MUTATED DEL PEAK 20(7Q31.1) WILD-TYPE
  CLUS_1                          16                            87
  CLUS_2                           6                            66
  CLUS_3                           4                            40
  CLUS_4                          15                            47
  CLUS_5                          15                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 21(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(7Q36.3) MUTATED       92      3      2      1
  DEL PEAK 21(7Q36.3) WILD-TYPE    142    150     49      2
D57V1, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          92                           142
  CLUS_2                           3                           150
  CLUS_3                           2                            49
  CLUS_4                           1                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(7Q36.3) MUTATED       15     25      3     37      9
  DEL PEAK 21(7Q36.3) WILD-TYPE     30     85     48     63     78
D57V2, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          15                            30
  CLUS_2                          25                            85
  CLUS_3                           3                            48
  CLUS_4                          37                            63
  CLUS_5                           9                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(7Q36.3) MUTATED        6     25     23     15     10
  DEL PEAK 21(7Q36.3) WILD-TYPE     24     67     59     78     49
D57V3, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                           6                            24
  CLUS_2                          25                            67
  CLUS_3                          23                            59
  CLUS_4                          15                            78
  CLUS_5                          10                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(7Q36.3) MUTATED       40      8     18     13
  DEL PEAK 21(7Q36.3) WILD-TYPE    100     50     60     67
D57V4, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          40                           100
  CLUS_2                           8                            50
  CLUS_3                          18                            60
  CLUS_4                          13                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(7Q36.3) MUTATED       39     13     21     18      3
  DEL PEAK 21(7Q36.3) WILD-TYPE     55     81     72     64     47
D57V5, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          39                            55
  CLUS_2                          13                            81
  CLUS_3                          21                            72
  CLUS_4                          18                            64
  CLUS_5                           3                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(7Q36.3) MUTATED       27     11     47      9
  DEL PEAK 21(7Q36.3) WILD-TYPE     82     71     88     78
D57V6, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          27                            82
  CLUS_2                          11                            71
  CLUS_3                          47                            88
  CLUS_4                           9                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(7Q36.3) MUTATED       13     10     13     13     14     33
  DEL PEAK 21(7Q36.3) WILD-TYPE     48     56     67     98     36     33
D57V7, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          13                            48
  CLUS_2                          10                            56
  CLUS_3                          13                            67
  CLUS_4                          13                            98
  CLUS_5                          14                            36
  CLUS_6                          33                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q36.3) MUTATED       44      8     44
  DEL PEAK 21(7Q36.3) WILD-TYPE    199     74     65
D57V8, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          44                           199
  CLUS_2                           8                            74
  CLUS_3                          44                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(7Q36.3) MUTATED       44     21     16
  DEL PEAK 21(7Q36.3) WILD-TYPE    103    100     57
D57V9, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          44                           103
  CLUS_2                          21                           100
  CLUS_3                          16                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(7Q36.3) MUTATED       21      5     11     28     16
  DEL PEAK 21(7Q36.3) WILD-TYPE     82     67     33     34     44
D57V10, multiclass
        clus
vv       DEL PEAK 21(7Q36.3) MUTATED DEL PEAK 21(7Q36.3) WILD-TYPE
  CLUS_1                          21                            82
  CLUS_2                           5                            67
  CLUS_3                          11                            33
  CLUS_4                          28                            34
  CLUS_5                          16                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 22(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(8P23.2) MUTATED       96      5     21      0
  DEL PEAK 22(8P23.2) WILD-TYPE    138    148     30      3
D58V1, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                          96                           138
  CLUS_2                           5                           148
  CLUS_3                          21                            30
  CLUS_4                           0                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(8P23.2) MUTATED       18     23      4     45     20
  DEL PEAK 22(8P23.2) WILD-TYPE     27     87     47     55     67
D58V2, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                          18                            27
  CLUS_2                          23                            87
  CLUS_3                           4                            47
  CLUS_4                          45                            55
  CLUS_5                          20                            67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(8P23.2) MUTATED       14     23     27     19     17
  DEL PEAK 22(8P23.2) WILD-TYPE     16     69     55     74     42
D58V3, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                          14                            16
  CLUS_2                          23                            69
  CLUS_3                          27                            55
  CLUS_4                          19                            74
  CLUS_5                          17                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(8P23.2) MUTATED       49     14     17     20
  DEL PEAK 22(8P23.2) WILD-TYPE     91     44     61     60
D58V4, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                          49                            91
  CLUS_2                          14                            44
  CLUS_3                          17                            61
  CLUS_4                          20                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(8P23.2) MUTATED       46     12     18     22     16
  DEL PEAK 22(8P23.2) WILD-TYPE     48     82     75     60     34
D58V5, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                          46                            48
  CLUS_2                          12                            82
  CLUS_3                          18                            75
  CLUS_4                          22                            60
  CLUS_5                          16                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(8P23.2) MUTATED       31      9     51     23
  DEL PEAK 22(8P23.2) WILD-TYPE     78     73     84     64
D58V6, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                          31                            78
  CLUS_2                           9                            73
  CLUS_3                          51                            84
  CLUS_4                          23                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(8P23.2) MUTATED       19     14     22     22     14     29
  DEL PEAK 22(8P23.2) WILD-TYPE     42     52     58     89     36     37
D58V7, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                          19                            42
  CLUS_2                          14                            52
  CLUS_3                          22                            58
  CLUS_4                          22                            89
  CLUS_5                          14                            36
  CLUS_6                          29                            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(8P23.2) MUTATED       59     13     48
  DEL PEAK 22(8P23.2) WILD-TYPE    184     69     61
D58V8, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                          59                           184
  CLUS_2                          13                            69
  CLUS_3                          48                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(8P23.2) MUTATED       50     26     21
  DEL PEAK 22(8P23.2) WILD-TYPE     97     95     52
D58V9, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                          50                            97
  CLUS_2                          26                            95
  CLUS_3                          21                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(8P23.2) MUTATED       34      9     12     29     13
  DEL PEAK 22(8P23.2) WILD-TYPE     69     63     32     33     47
D58V10, multiclass
        clus
vv       DEL PEAK 22(8P23.2) MUTATED DEL PEAK 22(8P23.2) WILD-TYPE
  CLUS_1                          34                            69
  CLUS_2                           9                            63
  CLUS_3                          12                            32
  CLUS_4                          29                            33
  CLUS_5                          13                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 23(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P23) MUTATED      162      9     22      2
  DEL PEAK 23(9P23) WILD-TYPE     72    144     29      1
D59V1, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                       162                          72
  CLUS_2                         9                         144
  CLUS_3                        22                          29
  CLUS_4                         2                           1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(9P23) MUTATED       28     40     11     69     28
  DEL PEAK 23(9P23) WILD-TYPE     17     70     40     31     59
D59V2, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        28                          17
  CLUS_2                        40                          70
  CLUS_3                        11                          40
  CLUS_4                        69                          31
  CLUS_5                        28                          59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(9P23) MUTATED       14     39     38     39     31
  DEL PEAK 23(9P23) WILD-TYPE     16     53     44     54     28
D59V3, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        14                          16
  CLUS_2                        39                          53
  CLUS_3                        38                          44
  CLUS_4                        39                          54
  CLUS_5                        31                          28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P23) MUTATED       78     13     33     37
  DEL PEAK 23(9P23) WILD-TYPE     62     45     45     43
D59V4, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        78                          62
  CLUS_2                        13                          45
  CLUS_3                        33                          45
  CLUS_4                        37                          43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(9P23) MUTATED       65     28     29     43     21
  DEL PEAK 23(9P23) WILD-TYPE     29     66     64     39     29
D59V5, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        65                          29
  CLUS_2                        28                          66
  CLUS_3                        29                          64
  CLUS_4                        43                          39
  CLUS_5                        21                          29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(9P23) MUTATED       53     24     79     30
  DEL PEAK 23(9P23) WILD-TYPE     56     58     56     57
D59V6, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        53                          56
  CLUS_2                        24                          58
  CLUS_3                        79                          56
  CLUS_4                        30                          57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(9P23) MUTATED       25     23     31     44     24     45
  DEL PEAK 23(9P23) WILD-TYPE     36     43     49     67     26     21
D59V7, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        25                          36
  CLUS_2                        23                          43
  CLUS_3                        31                          49
  CLUS_4                        44                          67
  CLUS_5                        24                          26
  CLUS_6                        45                          21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P23) MUTATED       97     27     68
  DEL PEAK 23(9P23) WILD-TYPE    146     55     41
D59V8, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        97                         146
  CLUS_2                        27                          55
  CLUS_3                        68                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(9P23) MUTATED       78     48     28
  DEL PEAK 23(9P23) WILD-TYPE     69     73     45
D59V9, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        78                          69
  CLUS_2                        48                          73
  CLUS_3                        28                          45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(9P23) MUTATED       44     22     22     41     25
  DEL PEAK 23(9P23) WILD-TYPE     59     50     22     21     35
D59V10, multiclass
        clus
vv       DEL PEAK 23(9P23) MUTATED DEL PEAK 23(9P23) WILD-TYPE
  CLUS_1                        44                          59
  CLUS_2                        22                          50
  CLUS_3                        22                          22
  CLUS_4                        41                          21
  CLUS_5                        25                          35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 24(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.3) MUTATED      166      9     16      2
  DEL PEAK 24(9P21.3) WILD-TYPE     68    144     35      1
D60V1, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                         166                            68
  CLUS_2                           9                           144
  CLUS_3                          16                            35
  CLUS_4                           2                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(9P21.3) MUTATED       31     42      2     73     27
  DEL PEAK 24(9P21.3) WILD-TYPE     14     68     49     27     60
D60V2, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          31                            14
  CLUS_2                          42                            68
  CLUS_3                           2                            49
  CLUS_4                          73                            27
  CLUS_5                          27                            60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(9P21.3) MUTATED       18     37     35     42     25
  DEL PEAK 24(9P21.3) WILD-TYPE     12     55     47     51     34
D60V3, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          18                            12
  CLUS_2                          37                            55
  CLUS_3                          35                            47
  CLUS_4                          42                            51
  CLUS_5                          25                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.3) MUTATED       76     14     31     36
  DEL PEAK 24(9P21.3) WILD-TYPE     64     44     47     44
D60V4, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          76                            64
  CLUS_2                          14                            44
  CLUS_3                          31                            47
  CLUS_4                          36                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(9P21.3) MUTATED       68     28     27     40     22
  DEL PEAK 24(9P21.3) WILD-TYPE     26     66     66     42     28
D60V5, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          68                            26
  CLUS_2                          28                            66
  CLUS_3                          27                            66
  CLUS_4                          40                            42
  CLUS_5                          22                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(9P21.3) MUTATED       54     24     78     29
  DEL PEAK 24(9P21.3) WILD-TYPE     55     58     57     58
D60V6, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          54                            55
  CLUS_2                          24                            58
  CLUS_3                          78                            57
  CLUS_4                          29                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(9P21.3) MUTATED       25     21     27     43     26     48
  DEL PEAK 24(9P21.3) WILD-TYPE     36     45     53     68     24     18
D60V7, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          25                            36
  CLUS_2                          21                            45
  CLUS_3                          27                            53
  CLUS_4                          43                            68
  CLUS_5                          26                            24
  CLUS_6                          48                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P21.3) MUTATED       94     26     70
  DEL PEAK 24(9P21.3) WILD-TYPE    149     56     39
D60V8, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          94                           149
  CLUS_2                          26                            56
  CLUS_3                          70                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(9P21.3) MUTATED       77     52     25
  DEL PEAK 24(9P21.3) WILD-TYPE     70     69     48
D60V9, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          77                            70
  CLUS_2                          52                            69
  CLUS_3                          25                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(9P21.3) MUTATED       43     23     19     44     25
  DEL PEAK 24(9P21.3) WILD-TYPE     60     49     25     18     35
D60V10, multiclass
        clus
vv       DEL PEAK 24(9P21.3) MUTATED DEL PEAK 24(9P21.3) WILD-TYPE
  CLUS_1                          43                            60
  CLUS_2                          23                            49
  CLUS_3                          19                            25
  CLUS_4                          44                            18
  CLUS_5                          25                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 25(9Q21.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED      102      1      9      1
  DEL PEAK 25(9Q21.11) WILD-TYPE    132    152     42      2
D61V1, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                          102                            132
  CLUS_2                            1                            152
  CLUS_3                            9                             42
  CLUS_4                            1                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(9Q21.11) MUTATED       16     23      2     44     19
  DEL PEAK 25(9Q21.11) WILD-TYPE     29     87     49     56     68
D61V2, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           16                             29
  CLUS_2                           23                             87
  CLUS_3                            2                             49
  CLUS_4                           44                             56
  CLUS_5                           19                             68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(9Q21.11) MUTATED        8     19     20     26     15
  DEL PEAK 25(9Q21.11) WILD-TYPE     22     73     62     67     44
D61V3, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                            8                             22
  CLUS_2                           19                             73
  CLUS_3                           20                             62
  CLUS_4                           26                             67
  CLUS_5                           15                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED       46      6     17     19
  DEL PEAK 25(9Q21.11) WILD-TYPE     94     52     61     61
D61V4, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           46                             94
  CLUS_2                            6                             52
  CLUS_3                           17                             61
  CLUS_4                           19                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(9Q21.11) MUTATED       46     18     16     17      9
  DEL PEAK 25(9Q21.11) WILD-TYPE     48     76     77     65     41
D61V5, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           46                             48
  CLUS_2                           18                             76
  CLUS_3                           16                             77
  CLUS_4                           17                             65
  CLUS_5                            9                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(9Q21.11) MUTATED       28     15     49     14
  DEL PEAK 25(9Q21.11) WILD-TYPE     81     67     86     73
D61V6, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           28                             81
  CLUS_2                           15                             67
  CLUS_3                           49                             86
  CLUS_4                           14                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(9Q21.11) MUTATED       16     10     17     25     10     33
  DEL PEAK 25(9Q21.11) WILD-TYPE     45     56     63     86     40     33
D61V7, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           16                             45
  CLUS_2                           10                             56
  CLUS_3                           17                             63
  CLUS_4                           25                             86
  CLUS_5                           10                             40
  CLUS_6                           33                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q21.11) MUTATED       46     15     50
  DEL PEAK 25(9Q21.11) WILD-TYPE    197     67     59
D61V8, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           46                            197
  CLUS_2                           15                             67
  CLUS_3                           50                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(9Q21.11) MUTATED       46     33     12
  DEL PEAK 25(9Q21.11) WILD-TYPE    101     88     61
D61V9, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           46                            101
  CLUS_2                           33                             88
  CLUS_3                           12                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(9Q21.11) MUTATED       20     13     10     32     16
  DEL PEAK 25(9Q21.11) WILD-TYPE     83     59     34     30     44
D61V10, multiclass
        clus
vv       DEL PEAK 25(9Q21.11) MUTATED DEL PEAK 25(9Q21.11) WILD-TYPE
  CLUS_1                           20                             83
  CLUS_2                           13                             59
  CLUS_3                           10                             34
  CLUS_4                           32                             30
  CLUS_5                           16                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 26(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P15.3) MUTATED       61      4     11      1
  DEL PEAK 26(10P15.3) WILD-TYPE    173    149     40      2
D62V1, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           61                            173
  CLUS_2                            4                            149
  CLUS_3                           11                             40
  CLUS_4                            1                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(10P15.3) MUTATED       14     17      2     26      9
  DEL PEAK 26(10P15.3) WILD-TYPE     31     93     49     74     78
D62V2, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           14                             31
  CLUS_2                           17                             93
  CLUS_3                            2                             49
  CLUS_4                           26                             74
  CLUS_5                            9                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(10P15.3) MUTATED        7     18     12     14      9
  DEL PEAK 26(10P15.3) WILD-TYPE     23     74     70     79     50
D62V3, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                           18                             74
  CLUS_3                           12                             70
  CLUS_4                           14                             79
  CLUS_5                            9                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P15.3) MUTATED       28      5     16     11
  DEL PEAK 26(10P15.3) WILD-TYPE    112     53     62     69
D62V4, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           28                            112
  CLUS_2                            5                             53
  CLUS_3                           16                             62
  CLUS_4                           11                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(10P15.3) MUTATED       24      8     14     20      7
  DEL PEAK 26(10P15.3) WILD-TYPE     70     86     79     62     43
D62V5, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           24                             70
  CLUS_2                            8                             86
  CLUS_3                           14                             79
  CLUS_4                           20                             62
  CLUS_5                            7                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10P15.3) MUTATED       23      7     29     14
  DEL PEAK 26(10P15.3) WILD-TYPE     86     75    106     73
D62V6, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           23                             86
  CLUS_2                            7                             75
  CLUS_3                           29                            106
  CLUS_4                           14                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(10P15.3) MUTATED       11      8     18     11     10     18
  DEL PEAK 26(10P15.3) WILD-TYPE     50     58     62    100     40     48
D62V7, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           11                             50
  CLUS_2                            8                             58
  CLUS_3                           18                             62
  CLUS_4                           11                            100
  CLUS_5                           10                             40
  CLUS_6                           18                             48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10P15.3) MUTATED       42      6     28
  DEL PEAK 26(10P15.3) WILD-TYPE    201     76     81
D62V8, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           42                            201
  CLUS_2                            6                             76
  CLUS_3                           28                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10P15.3) MUTATED       31     18      8
  DEL PEAK 26(10P15.3) WILD-TYPE    116    103     65
D62V9, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           31                            116
  CLUS_2                           18                            103
  CLUS_3                            8                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(10P15.3) MUTATED       17      7      6     17     10
  DEL PEAK 26(10P15.3) WILD-TYPE     86     65     38     45     50
D62V10, multiclass
        clus
vv       DEL PEAK 26(10P15.3) MUTATED DEL PEAK 26(10P15.3) WILD-TYPE
  CLUS_1                           17                             86
  CLUS_2                            7                             65
  CLUS_3                            6                             38
  CLUS_4                           17                             45
  CLUS_5                           10                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 27(10Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10Q22.3) MUTATED       61      2     15      1
  DEL PEAK 27(10Q22.3) WILD-TYPE    173    151     36      2
D63V1, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           61                            173
  CLUS_2                            2                            151
  CLUS_3                           15                             36
  CLUS_4                            1                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10Q22.3) MUTATED        7     14      3     33     13
  DEL PEAK 27(10Q22.3) WILD-TYPE     38     96     48     67     74
D63V2, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                            7                             38
  CLUS_2                           14                             96
  CLUS_3                            3                             48
  CLUS_4                           33                             67
  CLUS_5                           13                             74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10Q22.3) MUTATED        6     16     14     12     11
  DEL PEAK 27(10Q22.3) WILD-TYPE     24     76     68     81     48
D63V3, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           16                             76
  CLUS_3                           14                             68
  CLUS_4                           12                             81
  CLUS_5                           11                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10Q22.3) MUTATED       30      5     14     10
  DEL PEAK 27(10Q22.3) WILD-TYPE    110     53     64     70
D63V4, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           30                            110
  CLUS_2                            5                             53
  CLUS_3                           14                             64
  CLUS_4                           10                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10Q22.3) MUTATED       34      5     13     12     11
  DEL PEAK 27(10Q22.3) WILD-TYPE     60     89     80     70     39
D63V5, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           34                             60
  CLUS_2                            5                             89
  CLUS_3                           13                             80
  CLUS_4                           12                             70
  CLUS_5                           11                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(10Q22.3) MUTATED       18      4     33     20
  DEL PEAK 27(10Q22.3) WILD-TYPE     91     78    102     67
D63V6, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           18                             91
  CLUS_2                            4                             78
  CLUS_3                           33                            102
  CLUS_4                           20                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(10Q22.3) MUTATED       15     10     15     10      9     19
  DEL PEAK 27(10Q22.3) WILD-TYPE     46     56     65    101     41     47
D63V7, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           15                             46
  CLUS_2                           10                             56
  CLUS_3                           15                             65
  CLUS_4                           10                            101
  CLUS_5                            9                             41
  CLUS_6                           19                             47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10Q22.3) MUTATED       37      6     35
  DEL PEAK 27(10Q22.3) WILD-TYPE    206     76     74
D63V8, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           37                            206
  CLUS_2                            6                             76
  CLUS_3                           35                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(10Q22.3) MUTATED       29     17     10
  DEL PEAK 27(10Q22.3) WILD-TYPE    118    104     63
D63V9, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           29                            118
  CLUS_2                           17                            104
  CLUS_3                           10                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(10Q22.3) MUTATED       13      5      8     17     13
  DEL PEAK 27(10Q22.3) WILD-TYPE     90     67     36     45     47
D63V10, multiclass
        clus
vv       DEL PEAK 27(10Q22.3) MUTATED DEL PEAK 27(10Q22.3) WILD-TYPE
  CLUS_1                           13                             90
  CLUS_2                            5                             67
  CLUS_3                            8                             36
  CLUS_4                           17                             45
  CLUS_5                           13                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 28(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED       95      6     14      1
  DEL PEAK 28(10Q23.31) WILD-TYPE    139    147     37      2
D64V1, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            95                             139
  CLUS_2                             6                             147
  CLUS_3                            14                              37
  CLUS_4                             1                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(10Q23.31) MUTATED       13     23      4     48     14
  DEL PEAK 28(10Q23.31) WILD-TYPE     32     87     47     52     73
D64V2, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            13                              32
  CLUS_2                            23                              87
  CLUS_3                             4                              47
  CLUS_4                            48                              52
  CLUS_5                            14                              73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(10Q23.31) MUTATED       13     23     25     15     14
  DEL PEAK 28(10Q23.31) WILD-TYPE     17     69     57     78     45
D64V3, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            13                              17
  CLUS_2                            23                              69
  CLUS_3                            25                              57
  CLUS_4                            15                              78
  CLUS_5                            14                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED       49      9     17     15
  DEL PEAK 28(10Q23.31) WILD-TYPE     91     49     61     65
D64V4, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            49                              91
  CLUS_2                             9                              49
  CLUS_3                            17                              61
  CLUS_4                            15                              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(10Q23.31) MUTATED       49      9     15     20     15
  DEL PEAK 28(10Q23.31) WILD-TYPE     45     85     78     62     35
D64V5, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            49                              45
  CLUS_2                             9                              85
  CLUS_3                            15                              78
  CLUS_4                            20                              62
  CLUS_5                            15                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(10Q23.31) MUTATED       31      6     47     24
  DEL PEAK 28(10Q23.31) WILD-TYPE     78     76     88     63
D64V6, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            31                              78
  CLUS_2                             6                              76
  CLUS_3                            47                              88
  CLUS_4                            24                              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(10Q23.31) MUTATED       20     17     18     15     14     30
  DEL PEAK 28(10Q23.31) WILD-TYPE     41     49     62     96     36     36
D64V7, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            20                              41
  CLUS_2                            17                              49
  CLUS_3                            18                              62
  CLUS_4                            15                              96
  CLUS_5                            14                              36
  CLUS_6                            30                              36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10Q23.31) MUTATED       55     10     49
  DEL PEAK 28(10Q23.31) WILD-TYPE    188     72     60
D64V8, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            55                             188
  CLUS_2                            10                              72
  CLUS_3                            49                              60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(10Q23.31) MUTATED       47     26     14
  DEL PEAK 28(10Q23.31) WILD-TYPE    100     95     59
D64V9, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            47                             100
  CLUS_2                            26                              95
  CLUS_3                            14                              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(10Q23.31) MUTATED       23      8     12     26     18
  DEL PEAK 28(10Q23.31) WILD-TYPE     80     64     32     36     42
D64V10, multiclass
        clus
vv       DEL PEAK 28(10Q23.31) MUTATED DEL PEAK 28(10Q23.31) WILD-TYPE
  CLUS_1                            23                              80
  CLUS_2                             8                              64
  CLUS_3                            12                              32
  CLUS_4                            26                              36
  CLUS_5                            18                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 29(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED       81     10      6      0
  DEL PEAK 29(11P15.5) WILD-TYPE    153    143     45      3
D65V1, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           81                            153
  CLUS_2                           10                            143
  CLUS_3                            6                             45
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(11P15.5) MUTATED       18     20      3     33      9
  DEL PEAK 29(11P15.5) WILD-TYPE     27     90     48     67     78
D65V2, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           18                             27
  CLUS_2                           20                             90
  CLUS_3                            3                             48
  CLUS_4                           33                             67
  CLUS_5                            9                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(11P15.5) MUTATED       12     17     23     16     12
  DEL PEAK 29(11P15.5) WILD-TYPE     18     75     59     77     47
D65V3, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           12                             18
  CLUS_2                           17                             75
  CLUS_3                           23                             59
  CLUS_4                           16                             77
  CLUS_5                           12                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED       46     11     10     13
  DEL PEAK 29(11P15.5) WILD-TYPE     94     47     68     67
D65V4, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           46                             94
  CLUS_2                           11                             47
  CLUS_3                           10                             68
  CLUS_4                           13                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(11P15.5) MUTATED       40     10     14     15      8
  DEL PEAK 29(11P15.5) WILD-TYPE     54     84     79     67     42
D65V5, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           40                             54
  CLUS_2                           10                             84
  CLUS_3                           14                             79
  CLUS_4                           15                             67
  CLUS_5                            8                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(11P15.5) MUTATED       23      9     45     10
  DEL PEAK 29(11P15.5) WILD-TYPE     86     73     90     77
D65V6, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           23                             86
  CLUS_2                            9                             73
  CLUS_3                           45                             90
  CLUS_4                           10                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(11P15.5) MUTATED       11     12     16     21     11     23
  DEL PEAK 29(11P15.5) WILD-TYPE     50     54     64     90     39     43
D65V7, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           11                             50
  CLUS_2                           12                             54
  CLUS_3                           16                             64
  CLUS_4                           21                             90
  CLUS_5                           11                             39
  CLUS_6                           23                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11P15.5) MUTATED       47     10     37
  DEL PEAK 29(11P15.5) WILD-TYPE    196     72     72
D65V8, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           47                            196
  CLUS_2                           10                             72
  CLUS_3                           37                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(11P15.5) MUTATED       36     16     18
  DEL PEAK 29(11P15.5) WILD-TYPE    111    105     55
D65V9, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           36                            111
  CLUS_2                           16                            105
  CLUS_3                           18                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(11P15.5) MUTATED       16      9     12     21     12
  DEL PEAK 29(11P15.5) WILD-TYPE     87     63     32     41     48
D65V10, multiclass
        clus
vv       DEL PEAK 29(11P15.5) MUTATED DEL PEAK 29(11P15.5) WILD-TYPE
  CLUS_1                           16                             87
  CLUS_2                            9                             63
  CLUS_3                           12                             32
  CLUS_4                           21                             41
  CLUS_5                           12                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 30(11Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q23.2) MUTATED       73     10     14      2
  DEL PEAK 30(11Q23.2) WILD-TYPE    161    143     37      1
D66V1, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           73                            161
  CLUS_2                           10                            143
  CLUS_3                           14                             37
  CLUS_4                            2                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(11Q23.2) MUTATED       23     18      5     29     14
  DEL PEAK 30(11Q23.2) WILD-TYPE     22     92     46     71     73
D66V2, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           23                             22
  CLUS_2                           18                             92
  CLUS_3                            5                             46
  CLUS_4                           29                             71
  CLUS_5                           14                             73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(11Q23.2) MUTATED        8     23     15     13     15
  DEL PEAK 30(11Q23.2) WILD-TYPE     22     69     67     80     44
D66V3, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                            8                             22
  CLUS_2                           23                             69
  CLUS_3                           15                             67
  CLUS_4                           13                             80
  CLUS_5                           15                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q23.2) MUTATED       37      6     19     12
  DEL PEAK 30(11Q23.2) WILD-TYPE    103     52     59     68
D66V4, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           37                            103
  CLUS_2                            6                             52
  CLUS_3                           19                             59
  CLUS_4                           12                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(11Q23.2) MUTATED       30     11     16     22     11
  DEL PEAK 30(11Q23.2) WILD-TYPE     64     83     77     60     39
D66V5, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           30                             64
  CLUS_2                           11                             83
  CLUS_3                           16                             77
  CLUS_4                           22                             60
  CLUS_5                           11                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(11Q23.2) MUTATED       32      9     34     15
  DEL PEAK 30(11Q23.2) WILD-TYPE     77     73    101     72
D66V6, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           32                             77
  CLUS_2                            9                             73
  CLUS_3                           34                            101
  CLUS_4                           15                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(11Q23.2) MUTATED       13     16     20     23      7     19
  DEL PEAK 30(11Q23.2) WILD-TYPE     48     50     60     88     43     47
D66V7, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           13                             48
  CLUS_2                           16                             50
  CLUS_3                           20                             60
  CLUS_4                           23                             88
  CLUS_5                            7                             43
  CLUS_6                           19                             47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11Q23.2) MUTATED       54     12     32
  DEL PEAK 30(11Q23.2) WILD-TYPE    189     70     77
D66V8, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           54                            189
  CLUS_2                           12                             70
  CLUS_3                           32                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(11Q23.2) MUTATED       43     17     16
  DEL PEAK 30(11Q23.2) WILD-TYPE    104    104     57
D66V9, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           43                            104
  CLUS_2                           17                            104
  CLUS_3                           16                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(11Q23.2) MUTATED       22     10     11     23     10
  DEL PEAK 30(11Q23.2) WILD-TYPE     81     62     33     39     50
D66V10, multiclass
        clus
vv       DEL PEAK 30(11Q23.2) MUTATED DEL PEAK 30(11Q23.2) WILD-TYPE
  CLUS_1                           22                             81
  CLUS_2                           10                             62
  CLUS_3                           11                             33
  CLUS_4                           23                             39
  CLUS_5                           10                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 31(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12P13.1) MUTATED       72      3      2      0
  DEL PEAK 31(12P13.1) WILD-TYPE    162    150     49      3
D67V1, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           72                            162
  CLUS_2                            3                            150
  CLUS_3                            2                             49
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(12P13.1) MUTATED       11     15      1     38      4
  DEL PEAK 31(12P13.1) WILD-TYPE     34     95     50     62     83
D67V2, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           11                             34
  CLUS_2                           15                             95
  CLUS_3                            1                             50
  CLUS_4                           38                             62
  CLUS_5                            4                             83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(12P13.1) MUTATED        5     15     17     14     13
  DEL PEAK 31(12P13.1) WILD-TYPE     25     77     65     79     46
D67V3, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                           15                             77
  CLUS_3                           17                             65
  CLUS_4                           14                             79
  CLUS_5                           13                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12P13.1) MUTATED       32      6     12     14
  DEL PEAK 31(12P13.1) WILD-TYPE    108     52     66     66
D67V4, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           32                            108
  CLUS_2                            6                             52
  CLUS_3                           12                             66
  CLUS_4                           14                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(12P13.1) MUTATED       35     10      9     12      6
  DEL PEAK 31(12P13.1) WILD-TYPE     59     84     84     70     44
D67V5, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           35                             59
  CLUS_2                           10                             84
  CLUS_3                            9                             84
  CLUS_4                           12                             70
  CLUS_5                            6                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12P13.1) MUTATED       16      6     41      9
  DEL PEAK 31(12P13.1) WILD-TYPE     93     76     94     78
D67V6, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           16                             93
  CLUS_2                            6                             76
  CLUS_3                           41                             94
  CLUS_4                            9                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(12P13.1) MUTATED       13      9     10     12      8     24
  DEL PEAK 31(12P13.1) WILD-TYPE     48     57     70     99     42     42
D67V7, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           13                             48
  CLUS_2                            9                             57
  CLUS_3                           10                             70
  CLUS_4                           12                             99
  CLUS_5                            8                             42
  CLUS_6                           24                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12P13.1) MUTATED       33     10     33
  DEL PEAK 31(12P13.1) WILD-TYPE    210     72     76
D67V8, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           33                            210
  CLUS_2                           10                             72
  CLUS_3                           33                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12P13.1) MUTATED       33     19     13
  DEL PEAK 31(12P13.1) WILD-TYPE    114    102     60
D67V9, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           33                            114
  CLUS_2                           19                            102
  CLUS_3                           13                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(12P13.1) MUTATED       15      5      8     24     13
  DEL PEAK 31(12P13.1) WILD-TYPE     88     67     36     38     47
D67V10, multiclass
        clus
vv       DEL PEAK 31(12P13.1) MUTATED DEL PEAK 31(12P13.1) WILD-TYPE
  CLUS_1                           15                             88
  CLUS_2                            5                             67
  CLUS_3                            8                             36
  CLUS_4                           24                             38
  CLUS_5                           13                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 32(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q12) MUTATED       52      5      2      0
  DEL PEAK 32(12Q12) WILD-TYPE    182    148     49      3
D68V1, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         52                          182
  CLUS_2                          5                          148
  CLUS_3                          2                           49
  CLUS_4                          0                            3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(12Q12) MUTATED       14     12      0     23      5
  DEL PEAK 32(12Q12) WILD-TYPE     31     98     51     77     82
D68V2, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         14                           31
  CLUS_2                         12                           98
  CLUS_3                          0                           51
  CLUS_4                         23                           77
  CLUS_5                          5                           82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(12Q12) MUTATED        5     14      9     10      9
  DEL PEAK 32(12Q12) WILD-TYPE     25     78     73     83     50
D68V3, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                          5                           25
  CLUS_2                         14                           78
  CLUS_3                          9                           73
  CLUS_4                         10                           83
  CLUS_5                          9                           50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q12) MUTATED       18      9      9     11
  DEL PEAK 32(12Q12) WILD-TYPE    122     49     69     69
D68V4, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         18                          122
  CLUS_2                          9                           49
  CLUS_3                          9                           69
  CLUS_4                         11                           69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(12Q12) MUTATED       22      6      9     10      8
  DEL PEAK 32(12Q12) WILD-TYPE     72     88     84     72     42
D68V5, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         22                           72
  CLUS_2                          6                           88
  CLUS_3                          9                           84
  CLUS_4                         10                           72
  CLUS_5                          8                           42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(12Q12) MUTATED       14      5     25     11
  DEL PEAK 32(12Q12) WILD-TYPE     95     77    110     76
D68V6, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         14                           95
  CLUS_2                          5                           77
  CLUS_3                         25                          110
  CLUS_4                         11                           76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(12Q12) MUTATED        6      7     10     13      6     15
  DEL PEAK 32(12Q12) WILD-TYPE     55     59     70     98     44     51
D68V7, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                          6                           55
  CLUS_2                          7                           59
  CLUS_3                         10                           70
  CLUS_4                         13                           98
  CLUS_5                          6                           44
  CLUS_6                         15                           51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(12Q12) MUTATED       24     10     23
  DEL PEAK 32(12Q12) WILD-TYPE    219     72     86
D68V8, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         24                          219
  CLUS_2                         10                           72
  CLUS_3                         23                           86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(12Q12) MUTATED       24     17      7
  DEL PEAK 32(12Q12) WILD-TYPE    123    104     66
D68V9, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         24                          123
  CLUS_2                         17                          104
  CLUS_3                          7                           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(12Q12) MUTATED       12      8      3     16      9
  DEL PEAK 32(12Q12) WILD-TYPE     91     64     41     46     51
D68V10, multiclass
        clus
vv       DEL PEAK 32(12Q12) MUTATED DEL PEAK 32(12Q12) WILD-TYPE
  CLUS_1                         12                           91
  CLUS_2                          8                           64
  CLUS_3                          3                           41
  CLUS_4                         16                           46
  CLUS_5                          9                           51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 33(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED       53      4      5      1
  DEL PEAK 33(13Q12.11) WILD-TYPE    181    149     46      2
D69V1, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            53                             181
  CLUS_2                             4                             149
  CLUS_3                             5                              46
  CLUS_4                             1                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(13Q12.11) MUTATED       10     15      3     20      8
  DEL PEAK 33(13Q12.11) WILD-TYPE     35     95     48     80     79
D69V2, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            10                              35
  CLUS_2                            15                              95
  CLUS_3                             3                              48
  CLUS_4                            20                              80
  CLUS_5                             8                              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(13Q12.11) MUTATED        3     12     11     13     13
  DEL PEAK 33(13Q12.11) WILD-TYPE     27     80     71     80     46
D69V3, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                             3                              27
  CLUS_2                            12                              80
  CLUS_3                            11                              71
  CLUS_4                            13                              80
  CLUS_5                            13                              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED       27      6      8     11
  DEL PEAK 33(13Q12.11) WILD-TYPE    113     52     70     69
D69V4, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            27                             113
  CLUS_2                             6                              52
  CLUS_3                             8                              70
  CLUS_4                            11                              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(13Q12.11) MUTATED       18      9     15     13      5
  DEL PEAK 33(13Q12.11) WILD-TYPE     76     85     78     69     45
D69V5, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            18                              76
  CLUS_2                             9                              85
  CLUS_3                            15                              78
  CLUS_4                            13                              69
  CLUS_5                             5                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q12.11) MUTATED       18      7     28      7
  DEL PEAK 33(13Q12.11) WILD-TYPE     91     75    107     80
D69V6, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            18                              91
  CLUS_2                             7                              75
  CLUS_3                            28                             107
  CLUS_4                             7                              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(13Q12.11) MUTATED        8      8     11     16     10     10
  DEL PEAK 33(13Q12.11) WILD-TYPE     53     58     69     95     40     56
D69V7, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                             8                              53
  CLUS_2                             8                              58
  CLUS_3                            11                              69
  CLUS_4                            16                              95
  CLUS_5                            10                              40
  CLUS_6                            10                              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q12.11) MUTATED       37      7     19
  DEL PEAK 33(13Q12.11) WILD-TYPE    206     75     90
D69V8, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            37                             206
  CLUS_2                             7                              75
  CLUS_3                            19                              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q12.11) MUTATED       24     15     11
  DEL PEAK 33(13Q12.11) WILD-TYPE    123    106     62
D69V9, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            24                             123
  CLUS_2                            15                             106
  CLUS_3                            11                              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(13Q12.11) MUTATED       18      7      7     10      8
  DEL PEAK 33(13Q12.11) WILD-TYPE     85     65     37     52     52
D69V10, multiclass
        clus
vv       DEL PEAK 33(13Q12.11) MUTATED DEL PEAK 33(13Q12.11) WILD-TYPE
  CLUS_1                            18                              85
  CLUS_2                             7                              65
  CLUS_3                             7                              37
  CLUS_4                            10                              52
  CLUS_5                             8                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 34(14Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q23.3) MUTATED      122      7      6      1
  DEL PEAK 34(14Q23.3) WILD-TYPE    112    146     45      2
D70V1, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                          122                            112
  CLUS_2                            7                            146
  CLUS_3                            6                             45
  CLUS_4                            1                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(14Q23.3) MUTATED       20     27      9     56     11
  DEL PEAK 34(14Q23.3) WILD-TYPE     25     83     42     44     76
D70V2, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           20                             25
  CLUS_2                           27                             83
  CLUS_3                            9                             42
  CLUS_4                           56                             44
  CLUS_5                           11                             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(14Q23.3) MUTATED        7     32     26     26     21
  DEL PEAK 34(14Q23.3) WILD-TYPE     23     60     56     67     38
D70V3, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                           32                             60
  CLUS_3                           26                             56
  CLUS_4                           26                             67
  CLUS_5                           21                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q23.3) MUTATED       47     15     29     21
  DEL PEAK 34(14Q23.3) WILD-TYPE     93     43     49     59
D70V4, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           47                             93
  CLUS_2                           15                             43
  CLUS_3                           29                             49
  CLUS_4                           21                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(14Q23.3) MUTATED       52     19     21     24     10
  DEL PEAK 34(14Q23.3) WILD-TYPE     42     75     72     58     40
D70V5, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           52                             42
  CLUS_2                           19                             75
  CLUS_3                           21                             72
  CLUS_4                           24                             58
  CLUS_5                           10                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q23.3) MUTATED       35     15     59     17
  DEL PEAK 34(14Q23.3) WILD-TYPE     74     67     76     70
D70V6, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           35                             74
  CLUS_2                           15                             67
  CLUS_3                           59                             76
  CLUS_4                           17                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(14Q23.3) MUTATED       19     11     24     25     15     38
  DEL PEAK 34(14Q23.3) WILD-TYPE     42     55     56     86     35     28
D70V7, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           19                             42
  CLUS_2                           11                             55
  CLUS_3                           24                             56
  CLUS_4                           25                             86
  CLUS_5                           15                             35
  CLUS_6                           38                             28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q23.3) MUTATED       60     15     57
  DEL PEAK 34(14Q23.3) WILD-TYPE    183     67     52
D70V8, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           60                            183
  CLUS_2                           15                             67
  CLUS_3                           57                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q23.3) MUTATED       58     31     14
  DEL PEAK 34(14Q23.3) WILD-TYPE     89     90     59
D70V9, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           58                             89
  CLUS_2                           31                             90
  CLUS_3                           14                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(14Q23.3) MUTATED       34     12     11     33     13
  DEL PEAK 34(14Q23.3) WILD-TYPE     69     60     33     29     47
D70V10, multiclass
        clus
vv       DEL PEAK 34(14Q23.3) MUTATED DEL PEAK 34(14Q23.3) WILD-TYPE
  CLUS_1                           34                             69
  CLUS_2                           12                             60
  CLUS_3                           11                             33
  CLUS_4                           33                             29
  CLUS_5                           13                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 35(14Q32.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q32.32) MUTATED      117      8      8      0
  DEL PEAK 35(14Q32.32) WILD-TYPE    117    145     43      3
D71V1, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                           117                             117
  CLUS_2                             8                             145
  CLUS_3                             8                              43
  CLUS_4                             0                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(14Q32.32) MUTATED       24     26      9     47     13
  DEL PEAK 35(14Q32.32) WILD-TYPE     21     84     42     53     74
D71V2, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            24                              21
  CLUS_2                            26                              84
  CLUS_3                             9                              42
  CLUS_4                            47                              53
  CLUS_5                            13                              74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(14Q32.32) MUTATED        9     30     25     27     23
  DEL PEAK 35(14Q32.32) WILD-TYPE     21     62     57     66     36
D71V3, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                             9                              21
  CLUS_2                            30                              62
  CLUS_3                            25                              57
  CLUS_4                            27                              66
  CLUS_5                            23                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q32.32) MUTATED       48     15     27     24
  DEL PEAK 35(14Q32.32) WILD-TYPE     92     43     51     56
D71V4, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            48                              92
  CLUS_2                            15                              43
  CLUS_3                            27                              51
  CLUS_4                            24                              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(14Q32.32) MUTATED       43     23     26     24     10
  DEL PEAK 35(14Q32.32) WILD-TYPE     51     71     67     58     40
D71V5, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            43                              51
  CLUS_2                            23                              71
  CLUS_3                            26                              67
  CLUS_4                            24                              58
  CLUS_5                            10                              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q32.32) MUTATED       32     16     59     19
  DEL PEAK 35(14Q32.32) WILD-TYPE     77     66     76     68
D71V6, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            32                              77
  CLUS_2                            16                              66
  CLUS_3                            59                              76
  CLUS_4                            19                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(14Q32.32) MUTATED       17     13     25     30     13     32
  DEL PEAK 35(14Q32.32) WILD-TYPE     44     53     55     81     37     34
D71V7, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            17                              44
  CLUS_2                            13                              53
  CLUS_3                            25                              55
  CLUS_4                            30                              81
  CLUS_5                            13                              37
  CLUS_6                            32                              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q32.32) MUTATED       66     18     46
  DEL PEAK 35(14Q32.32) WILD-TYPE    177     64     63
D71V8, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            66                             177
  CLUS_2                            18                              64
  CLUS_3                            46                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q32.32) MUTATED       53     32     15
  DEL PEAK 35(14Q32.32) WILD-TYPE     94     89     58
D71V9, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            53                              94
  CLUS_2                            32                              89
  CLUS_3                            15                              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(14Q32.32) MUTATED       32     15     11     29     13
  DEL PEAK 35(14Q32.32) WILD-TYPE     71     57     33     33     47
D71V10, multiclass
        clus
vv       DEL PEAK 35(14Q32.32) MUTATED DEL PEAK 35(14Q32.32) WILD-TYPE
  CLUS_1                            32                              71
  CLUS_2                            15                              57
  CLUS_3                            11                              33
  CLUS_4                            29                              33
  CLUS_5                            13                              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 36(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q11.2) MUTATED      102      4     13      1
  DEL PEAK 36(15Q11.2) WILD-TYPE    132    149     38      2
D72V1, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                          102                            132
  CLUS_2                            4                            149
  CLUS_3                           13                             38
  CLUS_4                            1                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(15Q11.2) MUTATED       17     26      5     49     13
  DEL PEAK 36(15Q11.2) WILD-TYPE     28     84     46     51     74
D72V2, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           17                             28
  CLUS_2                           26                             84
  CLUS_3                            5                             46
  CLUS_4                           49                             51
  CLUS_5                           13                             74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(15Q11.2) MUTATED       10     20     31     12     21
  DEL PEAK 36(15Q11.2) WILD-TYPE     20     72     51     81     38
D72V3, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           10                             20
  CLUS_2                           20                             72
  CLUS_3                           31                             51
  CLUS_4                           12                             81
  CLUS_5                           21                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q11.2) MUTATED       52     14     15     13
  DEL PEAK 36(15Q11.2) WILD-TYPE     88     44     63     67
D72V4, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           52                             88
  CLUS_2                           14                             44
  CLUS_3                           15                             63
  CLUS_4                           13                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(15Q11.2) MUTATED       44     10     20     23     17
  DEL PEAK 36(15Q11.2) WILD-TYPE     50     84     73     59     33
D72V5, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           44                             50
  CLUS_2                           10                             84
  CLUS_3                           20                             73
  CLUS_4                           23                             59
  CLUS_5                           17                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q11.2) MUTATED       30      7     50     27
  DEL PEAK 36(15Q11.2) WILD-TYPE     79     75     85     60
D72V6, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           30                             79
  CLUS_2                            7                             75
  CLUS_3                           50                             85
  CLUS_4                           27                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(15Q11.2) MUTATED       23     11     22     18     15     29
  DEL PEAK 36(15Q11.2) WILD-TYPE     38     55     58     93     35     37
D72V7, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           23                             38
  CLUS_2                           11                             55
  CLUS_3                           22                             58
  CLUS_4                           18                             93
  CLUS_5                           15                             35
  CLUS_6                           29                             37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q11.2) MUTATED       58     11     49
  DEL PEAK 36(15Q11.2) WILD-TYPE    185     71     60
D72V8, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           58                            185
  CLUS_2                           11                             71
  CLUS_3                           49                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q11.2) MUTATED       50     25     19
  DEL PEAK 36(15Q11.2) WILD-TYPE     97     96     54
D72V9, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           50                             97
  CLUS_2                           25                             96
  CLUS_3                           19                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(15Q11.2) MUTATED       30      7     13     26     18
  DEL PEAK 36(15Q11.2) WILD-TYPE     73     65     31     36     42
D72V10, multiclass
        clus
vv       DEL PEAK 36(15Q11.2) MUTATED DEL PEAK 36(15Q11.2) WILD-TYPE
  CLUS_1                           30                             73
  CLUS_2                            7                             65
  CLUS_3                           13                             31
  CLUS_4                           26                             36
  CLUS_5                           18                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 37(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q15.1) MUTATED      109      3     10      0
  DEL PEAK 37(15Q15.1) WILD-TYPE    125    150     41      3
D73V1, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                          109                            125
  CLUS_2                            3                            150
  CLUS_3                           10                             41
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(15Q15.1) MUTATED       21     24      6     47     11
  DEL PEAK 37(15Q15.1) WILD-TYPE     24     86     45     53     76
D73V2, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           21                             24
  CLUS_2                           24                             86
  CLUS_3                            6                             45
  CLUS_4                           47                             53
  CLUS_5                           11                             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(15Q15.1) MUTATED        9     26     27     11     21
  DEL PEAK 37(15Q15.1) WILD-TYPE     21     66     55     82     38
D73V3, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                           26                             66
  CLUS_3                           27                             55
  CLUS_4                           11                             82
  CLUS_5                           21                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q15.1) MUTATED       48     16     17     13
  DEL PEAK 37(15Q15.1) WILD-TYPE     92     42     61     67
D73V4, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           48                             92
  CLUS_2                           16                             42
  CLUS_3                           17                             61
  CLUS_4                           13                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(15Q15.1) MUTATED       48      9     22     24     13
  DEL PEAK 37(15Q15.1) WILD-TYPE     46     85     71     58     37
D73V5, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           48                             46
  CLUS_2                            9                             85
  CLUS_3                           22                             71
  CLUS_4                           24                             58
  CLUS_5                           13                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(15Q15.1) MUTATED       32      5     54     25
  DEL PEAK 37(15Q15.1) WILD-TYPE     77     77     81     62
D73V6, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           32                             77
  CLUS_2                            5                             77
  CLUS_3                           54                             81
  CLUS_4                           25                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(15Q15.1) MUTATED       20     13     23     18     15     31
  DEL PEAK 37(15Q15.1) WILD-TYPE     41     53     57     93     35     35
D73V7, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           20                             41
  CLUS_2                           13                             53
  CLUS_3                           23                             57
  CLUS_4                           18                             93
  CLUS_5                           15                             35
  CLUS_6                           31                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(15Q15.1) MUTATED       60     10     50
  DEL PEAK 37(15Q15.1) WILD-TYPE    183     72     59
D73V8, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           60                            183
  CLUS_2                           10                             72
  CLUS_3                           50                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(15Q15.1) MUTATED       48     25     19
  DEL PEAK 37(15Q15.1) WILD-TYPE     99     96     54
D73V9, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           48                             99
  CLUS_2                           25                             96
  CLUS_3                           19                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(15Q15.1) MUTATED       30      5     13     27     17
  DEL PEAK 37(15Q15.1) WILD-TYPE     73     67     31     35     43
D73V10, multiclass
        clus
vv       DEL PEAK 37(15Q15.1) MUTATED DEL PEAK 37(15Q15.1) WILD-TYPE
  CLUS_1                           30                             73
  CLUS_2                            5                             67
  CLUS_3                           13                             31
  CLUS_4                           27                             35
  CLUS_5                           17                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 38(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16P13.3) MUTATED       91      3      2      2
  DEL PEAK 38(16P13.3) WILD-TYPE    143    150     49      1
D74V1, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           91                            143
  CLUS_2                            3                            150
  CLUS_3                            2                             49
  CLUS_4                            2                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(16P13.3) MUTATED       10     22      1     43     13
  DEL PEAK 38(16P13.3) WILD-TYPE     35     88     50     57     74
D74V2, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           10                             35
  CLUS_2                           22                             88
  CLUS_3                            1                             50
  CLUS_4                           43                             57
  CLUS_5                           13                             74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(16P13.3) MUTATED        4     24     19     20     12
  DEL PEAK 38(16P13.3) WILD-TYPE     26     68     63     73     47
D74V3, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                            4                             26
  CLUS_2                           24                             68
  CLUS_3                           19                             63
  CLUS_4                           20                             73
  CLUS_5                           12                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16P13.3) MUTATED       33     10     21     15
  DEL PEAK 38(16P13.3) WILD-TYPE    107     48     57     65
D74V4, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           33                            107
  CLUS_2                           10                             48
  CLUS_3                           21                             57
  CLUS_4                           15                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(16P13.3) MUTATED       51      8     12     14      5
  DEL PEAK 38(16P13.3) WILD-TYPE     43     86     81     68     45
D74V5, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           51                             43
  CLUS_2                            8                             86
  CLUS_3                           12                             81
  CLUS_4                           14                             68
  CLUS_5                            5                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16P13.3) MUTATED       21      8     53      8
  DEL PEAK 38(16P13.3) WILD-TYPE     88     74     82     79
D74V6, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           21                             88
  CLUS_2                            8                             74
  CLUS_3                           53                             82
  CLUS_4                            8                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(16P13.3) MUTATED       12      6     16     16     12     35
  DEL PEAK 38(16P13.3) WILD-TYPE     49     60     64     95     38     31
D74V7, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           12                             49
  CLUS_2                            6                             60
  CLUS_3                           16                             64
  CLUS_4                           16                             95
  CLUS_5                           12                             38
  CLUS_6                           35                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16P13.3) MUTATED       39      9     49
  DEL PEAK 38(16P13.3) WILD-TYPE    204     73     60
D74V8, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           39                            204
  CLUS_2                            9                             73
  CLUS_3                           49                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16P13.3) MUTATED       46     23      9
  DEL PEAK 38(16P13.3) WILD-TYPE    101     98     64
D74V9, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           46                            101
  CLUS_2                           23                             98
  CLUS_3                            9                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(16P13.3) MUTATED       19      8      3     31     17
  DEL PEAK 38(16P13.3) WILD-TYPE     84     64     41     31     43
D74V10, multiclass
        clus
vv       DEL PEAK 38(16P13.3) MUTATED DEL PEAK 38(16P13.3) WILD-TYPE
  CLUS_1                           19                             84
  CLUS_2                            8                             64
  CLUS_3                            3                             41
  CLUS_4                           31                             31
  CLUS_5                           17                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = DEL PEAK 39(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.1) MUTATED      134     27     20      1
  DEL PEAK 39(16Q23.1) WILD-TYPE    100    126     31      2
D75V1, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                          134                            100
  CLUS_2                           27                            126
  CLUS_3                           20                             31
  CLUS_4                            1                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(16Q23.1) MUTATED       16     50     16     55     24
  DEL PEAK 39(16Q23.1) WILD-TYPE     29     60     35     45     63
D75V2, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           16                             29
  CLUS_2                           50                             60
  CLUS_3                           16                             35
  CLUS_4                           55                             45
  CLUS_5                           24                             63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(16Q23.1) MUTATED       12     40     37     38     22
  DEL PEAK 39(16Q23.1) WILD-TYPE     18     52     45     55     37
D75V3, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           12                             18
  CLUS_2                           40                             52
  CLUS_3                           37                             45
  CLUS_4                           38                             55
  CLUS_5                           22                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.1) MUTATED       65     24     35     25
  DEL PEAK 39(16Q23.1) WILD-TYPE     75     34     43     55
D75V4, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           65                             75
  CLUS_2                           24                             34
  CLUS_3                           35                             43
  CLUS_4                           25                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(16Q23.1) MUTATED       54     30     35     32     18
  DEL PEAK 39(16Q23.1) WILD-TYPE     40     64     58     50     32
D75V5, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           54                             40
  CLUS_2                           30                             64
  CLUS_3                           35                             58
  CLUS_4                           32                             50
  CLUS_5                           18                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(16Q23.1) MUTATED       43     22     76     28
  DEL PEAK 39(16Q23.1) WILD-TYPE     66     60     59     59
D75V6, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           43                             66
  CLUS_2                           22                             60
  CLUS_3                           76                             59
  CLUS_4                           28                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(16Q23.1) MUTATED       27     23     31     35     23     40
  DEL PEAK 39(16Q23.1) WILD-TYPE     34     43     49     76     27     26
D75V7, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           27                             34
  CLUS_2                           23                             43
  CLUS_3                           31                             49
  CLUS_4                           35                             76
  CLUS_5                           23                             27
  CLUS_6                           40                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(16Q23.1) MUTATED       99     23     57
  DEL PEAK 39(16Q23.1) WILD-TYPE    144     59     52
D75V8, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           99                            144
  CLUS_2                           23                             59
  CLUS_3                           57                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(16Q23.1) MUTATED       71     42     24
  DEL PEAK 39(16Q23.1) WILD-TYPE     76     79     49
D75V9, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           71                             76
  CLUS_2                           42                             79
  CLUS_3                           24                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(16Q23.1) MUTATED       45     17     14     36     25
  DEL PEAK 39(16Q23.1) WILD-TYPE     58     55     30     26     35
D75V10, multiclass
        clus
vv       DEL PEAK 39(16Q23.1) MUTATED DEL PEAK 39(16Q23.1) WILD-TYPE
  CLUS_1                           45                             58
  CLUS_2                           17                             55
  CLUS_3                           14                             30
  CLUS_4                           36                             26
  CLUS_5                           25                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = DEL PEAK 40(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P12) MUTATED      160      5     15      1
  DEL PEAK 40(17P12) WILD-TYPE     74    148     36      2
D76V1, multiclass
        clus
vv       DEL PEAK 40(17P12) MUTATED DEL PEAK 40(17P12) WILD-TYPE
  CLUS_1                        160                           74
  CLUS_2                          5                          148
  CLUS_3                         15                           36
  CLUS_4                          1                            2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17P12) MUTATED       28     42      7     72     16
  DEL PEAK 40(17P12) WILD-TYPE     17     68     44     28     71
D76V2, multiclass
        clus
vv       DEL PEAK 40(17P12) MUTATED DEL PEAK 40(17P12) WILD-TYPE
  CLUS_1                         28                           17
  CLUS_2                         42                           68
  CLUS_3                          7                           44
  CLUS_4                         72                           28
  CLUS_5                         16                           71
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17P12) MUTATED       17     45     29     27     25
  DEL PEAK 40(17P12) WILD-TYPE     13     47     53     66     34
D76V3, multiclass
        clus
vv       DEL PEAK 40(17P12) MUTATED DEL PEAK 40(17P12) WILD-TYPE
  CLUS_1                         17                           13
  CLUS_2                         45                           47
  CLUS_3                         29                           53
  CLUS_4                         27                           66
  CLUS_5                         25                           34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P12) MUTATED       69     16     36     22
  DEL PEAK 40(17P12) WILD-TYPE     71     42     42     58
D76V4, multiclass
        clus
vv       DEL PEAK 40(17P12) MUTATED DEL PEAK 40(17P12) WILD-TYPE
  CLUS_1                         69                           71
  CLUS_2                         16                           42
  CLUS_3                         36                           42
  CLUS_4                         22                           58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17P12) MUTATED       64     17     30     37     20
  DEL PEAK 40(17P12) WILD-TYPE     30     77     63     45     30
D76V5, multiclass
        clus
vv       DEL PEAK 40(17P12) MUTATED DEL PEAK 40(17P12) WILD-TYPE
  CLUS_1                         64                           30
  CLUS_2                         17                           77
  CLUS_3                         30                           63
  CLUS_4                         37                           45
  CLUS_5                         20                           30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P12) MUTATED       52     14     69     33
  DEL PEAK 40(17P12) WILD-TYPE     57     68     66     54
D76V6, multiclass
        clus
vv       DEL PEAK 40(17P12) MUTATED DEL PEAK 40(17P12) WILD-TYPE
  CLUS_1                         52                           57
  CLUS_2                         14                           68
  CLUS_3                         69                           66
  CLUS_4                         33                           54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17P12) MUTATED       25     23     31     28     24     45
  DEL PEAK 40(17P12) WILD-TYPE     36     43     49     83     26     21
D76V7, multiclass
        clus
vv       DEL PEAK 40(17P12) MUTATED DEL PEAK 40(17P12) WILD-TYPE
  CLUS_1                         25                           36
  CLUS_2                         23                           43
  CLUS_3                         31                           49
  CLUS_4                         28                           83
  CLUS_5                         24                           26
  CLUS_6                         45                           21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P12) MUTATED       90     16     70
  DEL PEAK 40(17P12) WILD-TYPE    153     66     39
D76V8, multiclass
        clus
vv       DEL PEAK 40(17P12) MUTATED DEL PEAK 40(17P12) WILD-TYPE
  CLUS_1                         90                          153
  CLUS_2                         16                           66
  CLUS_3                         70                           39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P12) MUTATED       75     36     29
  DEL PEAK 40(17P12) WILD-TYPE     72     85     44
D76V9, multiclass
        clus
vv       DEL PEAK 40(17P12) MUTATED DEL PEAK 40(17P12) WILD-TYPE
  CLUS_1                         75                           72
  CLUS_2                         36                           85
  CLUS_3                         29                           44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17P12) MUTATED       45     14     18     40     23
  DEL PEAK 40(17P12) WILD-TYPE     58     58     26     22     37
D76V10, multiclass
        clus
vv       DEL PEAK 40(17P12) MUTATED DEL PEAK 40(17P12) WILD-TYPE
  CLUS_1                         45                           58
  CLUS_2                         14                           58
  CLUS_3                         18                           26
  CLUS_4                         40                           22
  CLUS_5                         23                           37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = DEL PEAK 41(17Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q24.3) MUTATED       67      2      7      0
  DEL PEAK 41(17Q24.3) WILD-TYPE    167    151     44      3
D77V1, multiclass
        clus
vv       DEL PEAK 41(17Q24.3) MUTATED DEL PEAK 41(17Q24.3) WILD-TYPE
  CLUS_1                           67                            167
  CLUS_2                            2                            151
  CLUS_3                            7                             44
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17Q24.3) MUTATED       10     18      0     26     10
  DEL PEAK 41(17Q24.3) WILD-TYPE     35     92     51     74     77
D77V2, multiclass
        clus
vv       DEL PEAK 41(17Q24.3) MUTATED DEL PEAK 41(17Q24.3) WILD-TYPE
  CLUS_1                           10                             35
  CLUS_2                           18                             92
  CLUS_3                            0                             51
  CLUS_4                           26                             74
  CLUS_5                           10                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17Q24.3) MUTATED        6     18     13     15      8
  DEL PEAK 41(17Q24.3) WILD-TYPE     24     74     69     78     51
D77V3, multiclass
        clus
vv       DEL PEAK 41(17Q24.3) MUTATED DEL PEAK 41(17Q24.3) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           18                             74
  CLUS_3                           13                             69
  CLUS_4                           15                             78
  CLUS_5                            8                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q24.3) MUTATED       29      8     13     10
  DEL PEAK 41(17Q24.3) WILD-TYPE    111     50     65     70
D77V4, multiclass
        clus
vv       DEL PEAK 41(17Q24.3) MUTATED DEL PEAK 41(17Q24.3) WILD-TYPE
  CLUS_1                           29                            111
  CLUS_2                            8                             50
  CLUS_3                           13                             65
  CLUS_4                           10                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17Q24.3) MUTATED       26     12      8     12     14
  DEL PEAK 41(17Q24.3) WILD-TYPE     68     82     85     70     36
D77V5, multiclass
        clus
vv       DEL PEAK 41(17Q24.3) MUTATED DEL PEAK 41(17Q24.3) WILD-TYPE
  CLUS_1                           26                             68
  CLUS_2                           12                             82
  CLUS_3                            8                             85
  CLUS_4                           12                             70
  CLUS_5                           14                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q24.3) MUTATED       15      8     30     19
  DEL PEAK 41(17Q24.3) WILD-TYPE     94     74    105     68
D77V6, multiclass
        clus
vv       DEL PEAK 41(17Q24.3) MUTATED DEL PEAK 41(17Q24.3) WILD-TYPE
  CLUS_1                           15                             94
  CLUS_2                            8                             74
  CLUS_3                           30                            105
  CLUS_4                           19                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(17Q24.3) MUTATED        9     11     14     17      8     15
  DEL PEAK 41(17Q24.3) WILD-TYPE     52     55     66     94     42     51
D77V7, multiclass
        clus
vv       DEL PEAK 41(17Q24.3) MUTATED DEL PEAK 41(17Q24.3) WILD-TYPE
  CLUS_1                            9                             52
  CLUS_2                           11                             55
  CLUS_3                           14                             66
  CLUS_4                           17                             94
  CLUS_5                            8                             42
  CLUS_6                           15                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q24.3) MUTATED       34     11     29
  DEL PEAK 41(17Q24.3) WILD-TYPE    209     71     80
D77V8, multiclass
        clus
vv       DEL PEAK 41(17Q24.3) MUTATED DEL PEAK 41(17Q24.3) WILD-TYPE
  CLUS_1                           34                            209
  CLUS_2                           11                             71
  CLUS_3                           29                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q24.3) MUTATED       27     19      8
  DEL PEAK 41(17Q24.3) WILD-TYPE    120    102     65
D77V9, multiclass
        clus
vv       DEL PEAK 41(17Q24.3) MUTATED DEL PEAK 41(17Q24.3) WILD-TYPE
  CLUS_1                           27                            120
  CLUS_2                           19                            102
  CLUS_3                            8                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17Q24.3) MUTATED       13     10      6     13     12
  DEL PEAK 41(17Q24.3) WILD-TYPE     90     62     38     49     48
D77V10, multiclass
        clus
vv       DEL PEAK 41(17Q24.3) MUTATED DEL PEAK 41(17Q24.3) WILD-TYPE
  CLUS_1                           13                             90
  CLUS_2                           10                             62
  CLUS_3                            6                             38
  CLUS_4                           13                             49
  CLUS_5                           12                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = DEL PEAK 42(18Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q12.2) MUTATED      142     15     24      0
  DEL PEAK 42(18Q12.2) WILD-TYPE     92    138     27      3
D78V1, multiclass
        clus
vv       DEL PEAK 42(18Q12.2) MUTATED DEL PEAK 42(18Q12.2) WILD-TYPE
  CLUS_1                          142                             92
  CLUS_2                           15                            138
  CLUS_3                           24                             27
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q12.2) MUTATED       34     32     22     50     21
  DEL PEAK 42(18Q12.2) WILD-TYPE     11     78     29     50     66
D78V2, multiclass
        clus
vv       DEL PEAK 42(18Q12.2) MUTATED DEL PEAK 42(18Q12.2) WILD-TYPE
  CLUS_1                           34                             11
  CLUS_2                           32                             78
  CLUS_3                           22                             29
  CLUS_4                           50                             50
  CLUS_5                           21                             66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q12.2) MUTATED       14     44     30     33     27
  DEL PEAK 42(18Q12.2) WILD-TYPE     16     48     52     60     32
D78V3, multiclass
        clus
vv       DEL PEAK 42(18Q12.2) MUTATED DEL PEAK 42(18Q12.2) WILD-TYPE
  CLUS_1                           14                             16
  CLUS_2                           44                             48
  CLUS_3                           30                             52
  CLUS_4                           33                             60
  CLUS_5                           27                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q12.2) MUTATED       65     19     37     27
  DEL PEAK 42(18Q12.2) WILD-TYPE     75     39     41     53
D78V4, multiclass
        clus
vv       DEL PEAK 42(18Q12.2) MUTATED DEL PEAK 42(18Q12.2) WILD-TYPE
  CLUS_1                           65                             75
  CLUS_2                           19                             39
  CLUS_3                           37                             41
  CLUS_4                           27                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q12.2) MUTATED       57     26     38     35     15
  DEL PEAK 42(18Q12.2) WILD-TYPE     37     68     55     47     35
D78V5, multiclass
        clus
vv       DEL PEAK 42(18Q12.2) MUTATED DEL PEAK 42(18Q12.2) WILD-TYPE
  CLUS_1                           57                             37
  CLUS_2                           26                             68
  CLUS_3                           38                             55
  CLUS_4                           35                             47
  CLUS_5                           15                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q12.2) MUTATED       46     23     75     27
  DEL PEAK 42(18Q12.2) WILD-TYPE     63     59     60     60
D78V6, multiclass
        clus
vv       DEL PEAK 42(18Q12.2) MUTATED DEL PEAK 42(18Q12.2) WILD-TYPE
  CLUS_1                           46                             63
  CLUS_2                           23                             59
  CLUS_3                           75                             60
  CLUS_4                           27                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(18Q12.2) MUTATED       28     21     37     38     14     40
  DEL PEAK 42(18Q12.2) WILD-TYPE     33     45     43     73     36     26
D78V7, multiclass
        clus
vv       DEL PEAK 42(18Q12.2) MUTATED DEL PEAK 42(18Q12.2) WILD-TYPE
  CLUS_1                           28                             33
  CLUS_2                           21                             45
  CLUS_3                           37                             43
  CLUS_4                           38                             73
  CLUS_5                           14                             36
  CLUS_6                           40                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q12.2) MUTATED       91     25     62
  DEL PEAK 42(18Q12.2) WILD-TYPE    152     57     47
D78V8, multiclass
        clus
vv       DEL PEAK 42(18Q12.2) MUTATED DEL PEAK 42(18Q12.2) WILD-TYPE
  CLUS_1                           91                            152
  CLUS_2                           25                             57
  CLUS_3                           62                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q12.2) MUTATED       73     39     23
  DEL PEAK 42(18Q12.2) WILD-TYPE     74     82     50
D78V9, multiclass
        clus
vv       DEL PEAK 42(18Q12.2) MUTATED DEL PEAK 42(18Q12.2) WILD-TYPE
  CLUS_1                           73                             74
  CLUS_2                           39                             82
  CLUS_3                           23                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q12.2) MUTATED       40     17     17     41     20
  DEL PEAK 42(18Q12.2) WILD-TYPE     63     55     27     21     40
D78V10, multiclass
        clus
vv       DEL PEAK 42(18Q12.2) MUTATED DEL PEAK 42(18Q12.2) WILD-TYPE
  CLUS_1                           40                             63
  CLUS_2                           17                             55
  CLUS_3                           17                             27
  CLUS_4                           41                             21
  CLUS_5                           20                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = DEL PEAK 43(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q21.2) MUTATED      157     19     28      0
  DEL PEAK 43(18Q21.2) WILD-TYPE     77    134     23      3
D79V1, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                          157                             77
  CLUS_2                           19                            134
  CLUS_3                           28                             23
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q21.2) MUTATED       36     41     23     58     24
  DEL PEAK 43(18Q21.2) WILD-TYPE      9     69     28     42     63
D79V2, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                           36                              9
  CLUS_2                           41                             69
  CLUS_3                           23                             28
  CLUS_4                           58                             42
  CLUS_5                           24                             63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q21.2) MUTATED       17     47     34     41     29
  DEL PEAK 43(18Q21.2) WILD-TYPE     13     45     48     52     30
D79V3, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                           17                             13
  CLUS_2                           47                             45
  CLUS_3                           34                             48
  CLUS_4                           41                             52
  CLUS_5                           29                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q21.2) MUTATED       75     21     40     32
  DEL PEAK 43(18Q21.2) WILD-TYPE     65     37     38     48
D79V4, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                           75                             65
  CLUS_2                           21                             37
  CLUS_3                           40                             38
  CLUS_4                           32                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q21.2) MUTATED       64     29     43     39     18
  DEL PEAK 43(18Q21.2) WILD-TYPE     30     65     50     43     32
D79V5, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                           64                             30
  CLUS_2                           29                             65
  CLUS_3                           43                             50
  CLUS_4                           39                             43
  CLUS_5                           18                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q21.2) MUTATED       51     25     82     35
  DEL PEAK 43(18Q21.2) WILD-TYPE     58     57     53     52
D79V6, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                           51                             58
  CLUS_2                           25                             57
  CLUS_3                           82                             53
  CLUS_4                           35                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q21.2) MUTATED       35     24     41     44     16     41
  DEL PEAK 43(18Q21.2) WILD-TYPE     26     42     39     67     34     25
D79V7, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                           35                             26
  CLUS_2                           24                             42
  CLUS_3                           41                             39
  CLUS_4                           44                             67
  CLUS_5                           16                             34
  CLUS_6                           41                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q21.2) MUTATED      106     28     67
  DEL PEAK 43(18Q21.2) WILD-TYPE    137     54     42
D79V8, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                          106                            137
  CLUS_2                           28                             54
  CLUS_3                           67                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q21.2) MUTATED       81     45     27
  DEL PEAK 43(18Q21.2) WILD-TYPE     66     76     46
D79V9, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                           81                             66
  CLUS_2                           45                             76
  CLUS_3                           27                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q21.2) MUTATED       47     20     20     41     25
  DEL PEAK 43(18Q21.2) WILD-TYPE     56     52     24     21     35
D79V10, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                           47                             56
  CLUS_2                           20                             52
  CLUS_3                           20                             24
  CLUS_4                           41                             21
  CLUS_5                           25                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = DEL PEAK 44(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED      146      2     13      1
  DEL PEAK 44(19P13.3) WILD-TYPE     88    151     38      2
D80V1, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                          146                             88
  CLUS_2                            2                            151
  CLUS_3                           13                             38
  CLUS_4                            1                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19P13.3) MUTATED       15     31      5     81     14
  DEL PEAK 44(19P13.3) WILD-TYPE     30     79     46     19     73
D80V2, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           15                             30
  CLUS_2                           31                             79
  CLUS_3                            5                             46
  CLUS_4                           81                             19
  CLUS_5                           14                             73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19P13.3) MUTATED       14     35     39     25     21
  DEL PEAK 44(19P13.3) WILD-TYPE     16     57     43     68     38
D80V3, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           14                             16
  CLUS_2                           35                             57
  CLUS_3                           39                             43
  CLUS_4                           25                             68
  CLUS_5                           21                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       73     14     26     21
  DEL PEAK 44(19P13.3) WILD-TYPE     67     44     52     59
D80V4, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           73                             67
  CLUS_2                           14                             44
  CLUS_3                           26                             52
  CLUS_4                           21                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19P13.3) MUTATED       77     12     22     28     15
  DEL PEAK 44(19P13.3) WILD-TYPE     17     82     71     54     35
D80V5, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           77                             17
  CLUS_2                           12                             82
  CLUS_3                           22                             71
  CLUS_4                           28                             54
  CLUS_5                           15                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       44      7     82     21
  DEL PEAK 44(19P13.3) WILD-TYPE     65     75     53     66
D80V6, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           44                             65
  CLUS_2                            7                             75
  CLUS_3                           82                             53
  CLUS_4                           21                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(19P13.3) MUTATED       22     14     23     22     19     59
  DEL PEAK 44(19P13.3) WILD-TYPE     39     52     57     89     31      7
D80V7, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           22                             39
  CLUS_2                           14                             52
  CLUS_3                           23                             57
  CLUS_4                           22                             89
  CLUS_5                           19                             31
  CLUS_6                           59                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       66      8     85
  DEL PEAK 44(19P13.3) WILD-TYPE    177     74     24
D80V8, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           66                            177
  CLUS_2                            8                             74
  CLUS_3                           85                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       71     31     25
  DEL PEAK 44(19P13.3) WILD-TYPE     76     90     48
D80V9, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           71                             76
  CLUS_2                           31                             90
  CLUS_3                           25                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19P13.3) MUTATED       28      8     18     50     23
  DEL PEAK 44(19P13.3) WILD-TYPE     75     64     26     12     37
D80V10, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           28                             75
  CLUS_2                            8                             64
  CLUS_3                           18                             26
  CLUS_4                           50                             12
  CLUS_5                           23                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = DEL PEAK 45(19Q13.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19Q13.11) MUTATED       70      3      1      1
  DEL PEAK 45(19Q13.11) WILD-TYPE    164    150     50      2
D81V1, multiclass
        clus
vv       DEL PEAK 45(19Q13.11) MUTATED DEL PEAK 45(19Q13.11) WILD-TYPE
  CLUS_1                            70                             164
  CLUS_2                             3                             150
  CLUS_3                             1                              50
  CLUS_4                             1                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19Q13.11) MUTATED        7     16      1     40      4
  DEL PEAK 45(19Q13.11) WILD-TYPE     38     94     50     60     83
D81V2, multiclass
        clus
vv       DEL PEAK 45(19Q13.11) MUTATED DEL PEAK 45(19Q13.11) WILD-TYPE
  CLUS_1                             7                              38
  CLUS_2                            16                              94
  CLUS_3                             1                              50
  CLUS_4                            40                              60
  CLUS_5                             4                              83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19Q13.11) MUTATED        3     20     17     12      8
  DEL PEAK 45(19Q13.11) WILD-TYPE     27     72     65     81     51
D81V3, multiclass
        clus
vv       DEL PEAK 45(19Q13.11) MUTATED DEL PEAK 45(19Q13.11) WILD-TYPE
  CLUS_1                             3                              27
  CLUS_2                            20                              72
  CLUS_3                            17                              65
  CLUS_4                            12                              81
  CLUS_5                             8                              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19Q13.11) MUTATED       28      8     12     12
  DEL PEAK 45(19Q13.11) WILD-TYPE    112     50     66     68
D81V4, multiclass
        clus
vv       DEL PEAK 45(19Q13.11) MUTATED DEL PEAK 45(19Q13.11) WILD-TYPE
  CLUS_1                            28                             112
  CLUS_2                             8                              50
  CLUS_3                            12                              66
  CLUS_4                            12                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19Q13.11) MUTATED       40      3     11     11      7
  DEL PEAK 45(19Q13.11) WILD-TYPE     54     91     82     71     43
D81V5, multiclass
        clus
vv       DEL PEAK 45(19Q13.11) MUTATED DEL PEAK 45(19Q13.11) WILD-TYPE
  CLUS_1                            40                              54
  CLUS_2                             3                              91
  CLUS_3                            11                              82
  CLUS_4                            11                              71
  CLUS_5                             7                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19Q13.11) MUTATED       20      2     38     12
  DEL PEAK 45(19Q13.11) WILD-TYPE     89     80     97     75
D81V6, multiclass
        clus
vv       DEL PEAK 45(19Q13.11) MUTATED DEL PEAK 45(19Q13.11) WILD-TYPE
  CLUS_1                            20                              89
  CLUS_2                             2                              80
  CLUS_3                            38                              97
  CLUS_4                            12                              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(19Q13.11) MUTATED        9      8     11      6     11     29
  DEL PEAK 45(19Q13.11) WILD-TYPE     52     58     69    105     39     37
D81V7, multiclass
        clus
vv       DEL PEAK 45(19Q13.11) MUTATED DEL PEAK 45(19Q13.11) WILD-TYPE
  CLUS_1                             9                              52
  CLUS_2                             8                              58
  CLUS_3                            11                              69
  CLUS_4                             6                             105
  CLUS_5                            11                              39
  CLUS_6                            29                              37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19Q13.11) MUTATED       28      4     42
  DEL PEAK 45(19Q13.11) WILD-TYPE    215     78     67
D81V8, multiclass
        clus
vv       DEL PEAK 45(19Q13.11) MUTATED DEL PEAK 45(19Q13.11) WILD-TYPE
  CLUS_1                            28                             215
  CLUS_2                             4                              78
  CLUS_3                            42                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19Q13.11) MUTATED       35     13     12
  DEL PEAK 45(19Q13.11) WILD-TYPE    112    108     61
D81V9, multiclass
        clus
vv       DEL PEAK 45(19Q13.11) MUTATED DEL PEAK 45(19Q13.11) WILD-TYPE
  CLUS_1                            35                             112
  CLUS_2                            13                             108
  CLUS_3                            12                              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19Q13.11) MUTATED       12      3      5     24     16
  DEL PEAK 45(19Q13.11) WILD-TYPE     91     69     39     38     44
D81V10, multiclass
        clus
vv       DEL PEAK 45(19Q13.11) MUTATED DEL PEAK 45(19Q13.11) WILD-TYPE
  CLUS_1                            12                              91
  CLUS_2                             3                              69
  CLUS_3                             5                              39
  CLUS_4                            24                              38
  CLUS_5                            16                              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = DEL PEAK 46(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(20P12.1) MUTATED       32      5      2      0
  DEL PEAK 46(20P12.1) WILD-TYPE    202    148     49      3
D82V1, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           32                            202
  CLUS_2                            5                            148
  CLUS_3                            2                             49
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(20P12.1) MUTATED        9      6      1     16      5
  DEL PEAK 46(20P12.1) WILD-TYPE     36    104     50     84     82
D82V2, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                            9                             36
  CLUS_2                            6                            104
  CLUS_3                            1                             50
  CLUS_4                           16                             84
  CLUS_5                            5                             82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(20P12.1) MUTATED        3      8      7      5      9
  DEL PEAK 46(20P12.1) WILD-TYPE     27     84     75     88     50
D82V3, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                            8                             84
  CLUS_3                            7                             75
  CLUS_4                            5                             88
  CLUS_5                            9                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(20P12.1) MUTATED       15      2      8      7
  DEL PEAK 46(20P12.1) WILD-TYPE    125     56     70     73
D82V4, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           15                            125
  CLUS_2                            2                             56
  CLUS_3                            8                             70
  CLUS_4                            7                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(20P12.1) MUTATED       11      2      9     13      3
  DEL PEAK 46(20P12.1) WILD-TYPE     83     92     84     69     47
D82V5, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           11                             83
  CLUS_2                            2                             92
  CLUS_3                            9                             84
  CLUS_4                           13                             69
  CLUS_5                            3                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(20P12.1) MUTATED       15      2     15      6
  DEL PEAK 46(20P12.1) WILD-TYPE     94     80    120     81
D82V6, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           15                             94
  CLUS_2                            2                             80
  CLUS_3                           15                            120
  CLUS_4                            6                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(20P12.1) MUTATED        3      2     10      6      8     10
  DEL PEAK 46(20P12.1) WILD-TYPE     58     64     70    105     42     56
D82V7, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                            3                             58
  CLUS_2                            2                             64
  CLUS_3                           10                             70
  CLUS_4                            6                            105
  CLUS_5                            8                             42
  CLUS_6                           10                             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(20P12.1) MUTATED       20      3     16
  DEL PEAK 46(20P12.1) WILD-TYPE    223     79     93
D82V8, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           20                            223
  CLUS_2                            3                             79
  CLUS_3                           16                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(20P12.1) MUTATED       15     11      7
  DEL PEAK 46(20P12.1) WILD-TYPE    132    110     66
D82V9, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           15                            132
  CLUS_2                           11                            110
  CLUS_3                            7                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(20P12.1) MUTATED       10      1      4      8     10
  DEL PEAK 46(20P12.1) WILD-TYPE     93     71     40     54     50
D82V10, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           10                             93
  CLUS_2                            1                             71
  CLUS_3                            4                             40
  CLUS_4                            8                             54
  CLUS_5                           10                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = DEL PEAK 47(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q11.2) MUTATED      142     16     22      2
  DEL PEAK 47(21Q11.2) WILD-TYPE     92    137     29      1
D83V1, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                          142                             92
  CLUS_2                           16                            137
  CLUS_3                           22                             29
  CLUS_4                            2                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(21Q11.2) MUTATED       23     47      7     61     29
  DEL PEAK 47(21Q11.2) WILD-TYPE     22     63     44     39     58
D83V2, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           23                             22
  CLUS_2                           47                             63
  CLUS_3                            7                             44
  CLUS_4                           61                             39
  CLUS_5                           29                             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(21Q11.2) MUTATED       13     38     35     37     18
  DEL PEAK 47(21Q11.2) WILD-TYPE     17     54     47     56     41
D83V3, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           13                             17
  CLUS_2                           38                             54
  CLUS_3                           35                             47
  CLUS_4                           37                             56
  CLUS_5                           18                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q11.2) MUTATED       64     17     31     29
  DEL PEAK 47(21Q11.2) WILD-TYPE     76     41     47     51
D83V4, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           64                             76
  CLUS_2                           17                             41
  CLUS_3                           31                             47
  CLUS_4                           29                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(21Q11.2) MUTATED       58     27     36     33     17
  DEL PEAK 47(21Q11.2) WILD-TYPE     36     67     57     49     33
D83V5, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           58                             36
  CLUS_2                           27                             67
  CLUS_3                           36                             57
  CLUS_4                           33                             49
  CLUS_5                           17                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q11.2) MUTATED       47     22     70     32
  DEL PEAK 47(21Q11.2) WILD-TYPE     62     60     65     55
D83V6, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           47                             62
  CLUS_2                           22                             60
  CLUS_3                           70                             65
  CLUS_4                           32                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(21Q11.2) MUTATED       25     20     30     39     23     42
  DEL PEAK 47(21Q11.2) WILD-TYPE     36     46     50     72     27     24
D83V7, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           25                             36
  CLUS_2                           20                             46
  CLUS_3                           30                             50
  CLUS_4                           39                             72
  CLUS_5                           23                             27
  CLUS_6                           42                             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q11.2) MUTATED       91     26     62
  DEL PEAK 47(21Q11.2) WILD-TYPE    152     56     47
D83V8, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           91                            152
  CLUS_2                           26                             56
  CLUS_3                           62                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q11.2) MUTATED       79     44     22
  DEL PEAK 47(21Q11.2) WILD-TYPE     68     77     51
D83V9, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           79                             68
  CLUS_2                           44                             77
  CLUS_3                           22                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(21Q11.2) MUTATED       47     22     14     40     22
  DEL PEAK 47(21Q11.2) WILD-TYPE     56     50     30     22     38
D83V10, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           47                             56
  CLUS_2                           22                             50
  CLUS_3                           14                             30
  CLUS_4                           40                             22
  CLUS_5                           22                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = DEL PEAK 48(21Q22.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(21Q22.13) MUTATED      153     17     24      2
  DEL PEAK 48(21Q22.13) WILD-TYPE     81    136     27      1
D84V1, multiclass
        clus
vv       DEL PEAK 48(21Q22.13) MUTATED DEL PEAK 48(21Q22.13) WILD-TYPE
  CLUS_1                           153                              81
  CLUS_2                            17                             136
  CLUS_3                            24                              27
  CLUS_4                             2                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(21Q22.13) MUTATED       26     52      8     60     31
  DEL PEAK 48(21Q22.13) WILD-TYPE     19     58     43     40     56
D84V2, multiclass
        clus
vv       DEL PEAK 48(21Q22.13) MUTATED DEL PEAK 48(21Q22.13) WILD-TYPE
  CLUS_1                            26                              19
  CLUS_2                            52                              58
  CLUS_3                             8                              43
  CLUS_4                            60                              40
  CLUS_5                            31                              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(21Q22.13) MUTATED       15     44     37     41     17
  DEL PEAK 48(21Q22.13) WILD-TYPE     15     48     45     52     42
D84V3, multiclass
        clus
vv       DEL PEAK 48(21Q22.13) MUTATED DEL PEAK 48(21Q22.13) WILD-TYPE
  CLUS_1                            15                              15
  CLUS_2                            44                              48
  CLUS_3                            37                              45
  CLUS_4                            41                              52
  CLUS_5                            17                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(21Q22.13) MUTATED       67     18     36     33
  DEL PEAK 48(21Q22.13) WILD-TYPE     73     40     42     47
D84V4, multiclass
        clus
vv       DEL PEAK 48(21Q22.13) MUTATED DEL PEAK 48(21Q22.13) WILD-TYPE
  CLUS_1                            67                              73
  CLUS_2                            18                              40
  CLUS_3                            36                              42
  CLUS_4                            33                              47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(21Q22.13) MUTATED       59     29     42     38     17
  DEL PEAK 48(21Q22.13) WILD-TYPE     35     65     51     44     33
D84V5, multiclass
        clus
vv       DEL PEAK 48(21Q22.13) MUTATED DEL PEAK 48(21Q22.13) WILD-TYPE
  CLUS_1                            59                              35
  CLUS_2                            29                              65
  CLUS_3                            42                              51
  CLUS_4                            38                              44
  CLUS_5                            17                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(21Q22.13) MUTATED       53     24     75     33
  DEL PEAK 48(21Q22.13) WILD-TYPE     56     58     60     54
D84V6, multiclass
        clus
vv       DEL PEAK 48(21Q22.13) MUTATED DEL PEAK 48(21Q22.13) WILD-TYPE
  CLUS_1                            53                              56
  CLUS_2                            24                              58
  CLUS_3                            75                              60
  CLUS_4                            33                              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(21Q22.13) MUTATED       29     22     33     40     27     42
  DEL PEAK 48(21Q22.13) WILD-TYPE     32     44     47     71     23     24
D84V7, multiclass
        clus
vv       DEL PEAK 48(21Q22.13) MUTATED DEL PEAK 48(21Q22.13) WILD-TYPE
  CLUS_1                            29                              32
  CLUS_2                            22                              44
  CLUS_3                            33                              47
  CLUS_4                            40                              71
  CLUS_5                            27                              23
  CLUS_6                            42                              24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(21Q22.13) MUTATED      100     26     67
  DEL PEAK 48(21Q22.13) WILD-TYPE    143     56     42
D84V8, multiclass
        clus
vv       DEL PEAK 48(21Q22.13) MUTATED DEL PEAK 48(21Q22.13) WILD-TYPE
  CLUS_1                           100                             143
  CLUS_2                            26                              56
  CLUS_3                            67                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(21Q22.13) MUTATED       82     46     28
  DEL PEAK 48(21Q22.13) WILD-TYPE     65     75     45
D84V9, multiclass
        clus
vv       DEL PEAK 48(21Q22.13) MUTATED DEL PEAK 48(21Q22.13) WILD-TYPE
  CLUS_1                            82                              65
  CLUS_2                            46                              75
  CLUS_3                            28                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(21Q22.13) MUTATED       51     23     15     40     27
  DEL PEAK 48(21Q22.13) WILD-TYPE     52     49     29     22     33
D84V10, multiclass
        clus
vv       DEL PEAK 48(21Q22.13) MUTATED DEL PEAK 48(21Q22.13) WILD-TYPE
  CLUS_1                            51                              52
  CLUS_2                            23                              49
  CLUS_3                            15                              29
  CLUS_4                            40                              22
  CLUS_5                            27                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = DEL PEAK 49(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q13.31) MUTATED      143      6     12      0
  DEL PEAK 49(22Q13.31) WILD-TYPE     91    147     39      3
D85V1, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                           143                              91
  CLUS_2                             6                             147
  CLUS_3                            12                              39
  CLUS_4                             0                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(22Q13.31) MUTATED       22     36      6     59     21
  DEL PEAK 49(22Q13.31) WILD-TYPE     23     74     45     41     66
D85V2, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            22                              23
  CLUS_2                            36                              74
  CLUS_3                             6                              45
  CLUS_4                            59                              41
  CLUS_5                            21                              66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(22Q13.31) MUTATED       12     33     30     29     22
  DEL PEAK 49(22Q13.31) WILD-TYPE     18     59     52     64     37
D85V3, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            12                              18
  CLUS_2                            33                              59
  CLUS_3                            30                              52
  CLUS_4                            29                              64
  CLUS_5                            22                              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q13.31) MUTATED       62     13     29     22
  DEL PEAK 49(22Q13.31) WILD-TYPE     78     45     49     58
D85V4, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            62                              78
  CLUS_2                            13                              45
  CLUS_3                            29                              49
  CLUS_4                            22                              58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(22Q13.31) MUTATED       50     23     30     33     16
  DEL PEAK 49(22Q13.31) WILD-TYPE     44     71     63     49     34
D85V5, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            50                              44
  CLUS_2                            23                              71
  CLUS_3                            30                              63
  CLUS_4                            33                              49
  CLUS_5                            16                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q13.31) MUTATED       48     18     60     26
  DEL PEAK 49(22Q13.31) WILD-TYPE     61     64     75     61
D85V6, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            48                              61
  CLUS_2                            18                              64
  CLUS_3                            60                              75
  CLUS_4                            26                              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(22Q13.31) MUTATED       20     16     28     30     22     42
  DEL PEAK 49(22Q13.31) WILD-TYPE     41     50     52     81     28     24
D85V7, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            20                              41
  CLUS_2                            16                              50
  CLUS_3                            28                              52
  CLUS_4                            30                              81
  CLUS_5                            22                              28
  CLUS_6                            42                              24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.31) MUTATED       77     17     64
  DEL PEAK 49(22Q13.31) WILD-TYPE    166     65     45
D85V8, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            77                             166
  CLUS_2                            17                              65
  CLUS_3                            64                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.31) MUTATED       63     37     28
  DEL PEAK 49(22Q13.31) WILD-TYPE     84     84     45
D85V9, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            63                              84
  CLUS_2                            37                              84
  CLUS_3                            28                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(22Q13.31) MUTATED       37     14     16     37     24
  DEL PEAK 49(22Q13.31) WILD-TYPE     66     58     28     25     36
D85V10, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            37                              66
  CLUS_2                            14                              58
  CLUS_3                            16                              28
  CLUS_4                            37                              25
  CLUS_5                            24                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = DEL PEAK 50(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(XP22.2) MUTATED       70      8      7      0
  DEL PEAK 50(XP22.2) WILD-TYPE    164    145     44      3
D86V1, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          70                           164
  CLUS_2                           8                           145
  CLUS_3                           7                            44
  CLUS_4                           0                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(XP22.2) MUTATED       16     21      3     31      8
  DEL PEAK 50(XP22.2) WILD-TYPE     29     89     48     69     79
D86V2, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          16                            29
  CLUS_2                          21                            89
  CLUS_3                           3                            48
  CLUS_4                          31                            69
  CLUS_5                           8                            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(XP22.2) MUTATED        5     16     17     16     15
  DEL PEAK 50(XP22.2) WILD-TYPE     25     76     65     77     44
D86V3, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          16                            76
  CLUS_3                          17                            65
  CLUS_4                          16                            77
  CLUS_5                          15                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(XP22.2) MUTATED       34      9     14     12
  DEL PEAK 50(XP22.2) WILD-TYPE    106     49     64     68
D86V4, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          34                           106
  CLUS_2                           9                            49
  CLUS_3                          14                            64
  CLUS_4                          12                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(XP22.2) MUTATED       25     13     12     15     14
  DEL PEAK 50(XP22.2) WILD-TYPE     69     81     81     67     36
D86V5, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          25                            69
  CLUS_2                          13                            81
  CLUS_3                          12                            81
  CLUS_4                          15                            67
  CLUS_5                          14                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(XP22.2) MUTATED       23     11     25     20
  DEL PEAK 50(XP22.2) WILD-TYPE     86     71    110     67
D86V6, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          23                            86
  CLUS_2                          11                            71
  CLUS_3                          25                           110
  CLUS_4                          20                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 50(XP22.2) MUTATED       16     10      8     19     11     20
  DEL PEAK 50(XP22.2) WILD-TYPE     45     56     72     92     39     46
D86V7, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          16                            45
  CLUS_2                          10                            56
  CLUS_3                           8                            72
  CLUS_4                          19                            92
  CLUS_5                          11                            39
  CLUS_6                          20                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP22.2) MUTATED       40     10     34
  DEL PEAK 50(XP22.2) WILD-TYPE    203     72     75
D86V8, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          40                           203
  CLUS_2                          10                            72
  CLUS_3                          34                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP22.2) MUTATED       33     22     19
  DEL PEAK 50(XP22.2) WILD-TYPE    114     99     54
D86V9, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          33                           114
  CLUS_2                          22                            99
  CLUS_3                          19                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(XP22.2) MUTATED       20     10     12     19     13
  DEL PEAK 50(XP22.2) WILD-TYPE     83     62     32     43     47
D86V10, multiclass
        clus
vv       DEL PEAK 50(XP22.2) MUTATED DEL PEAK 50(XP22.2) WILD-TYPE
  CLUS_1                          20                            83
  CLUS_2                          10                            62
  CLUS_3                          12                            32
  CLUS_4                          19                            43
  CLUS_5                          13                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = DEL PEAK 51(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP21.1) MUTATED       63      4      9      0
  DEL PEAK 51(XP21.1) WILD-TYPE    171    149     42      3
D87V1, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          63                           171
  CLUS_2                           4                           149
  CLUS_3                           9                            42
  CLUS_4                           0                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 51(XP21.1) MUTATED       15     19      4     21      9
  DEL PEAK 51(XP21.1) WILD-TYPE     30     91     47     79     78
D87V2, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          15                            30
  CLUS_2                          19                            91
  CLUS_3                           4                            47
  CLUS_4                          21                            79
  CLUS_5                           9                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 51(XP21.1) MUTATED        5     15     13     17     11
  DEL PEAK 51(XP21.1) WILD-TYPE     25     77     69     76     48
D87V3, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          15                            77
  CLUS_3                          13                            69
  CLUS_4                          17                            76
  CLUS_5                          11                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP21.1) MUTATED       27      8     14     12
  DEL PEAK 51(XP21.1) WILD-TYPE    113     50     64     68
D87V4, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          27                           113
  CLUS_2                           8                            50
  CLUS_3                          14                            64
  CLUS_4                          12                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 51(XP21.1) MUTATED       22     12     10     16     10
  DEL PEAK 51(XP21.1) WILD-TYPE     72     82     83     66     40
D87V5, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          22                            72
  CLUS_2                          12                            82
  CLUS_3                          10                            83
  CLUS_4                          16                            66
  CLUS_5                          10                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP21.1) MUTATED       22     12     24     12
  DEL PEAK 51(XP21.1) WILD-TYPE     87     70    111     75
D87V6, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          22                            87
  CLUS_2                          12                            70
  CLUS_3                          24                           111
  CLUS_4                          12                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 51(XP21.1) MUTATED       12      9      7     16     13     16
  DEL PEAK 51(XP21.1) WILD-TYPE     49     57     73     95     37     50
D87V7, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          12                            49
  CLUS_2                           9                            57
  CLUS_3                           7                            73
  CLUS_4                          16                            95
  CLUS_5                          13                            37
  CLUS_6                          16                            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XP21.1) MUTATED       39     10     24
  DEL PEAK 51(XP21.1) WILD-TYPE    204     72     85
D87V8, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          39                           204
  CLUS_2                          10                            72
  CLUS_3                          24                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XP21.1) MUTATED       31     18     14
  DEL PEAK 51(XP21.1) WILD-TYPE    116    103     59
D87V9, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          31                           116
  CLUS_2                          18                           103
  CLUS_3                          14                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 51(XP21.1) MUTATED       21      9      7     14     12
  DEL PEAK 51(XP21.1) WILD-TYPE     82     63     37     48     48
D87V10, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          21                            82
  CLUS_2                           9                            63
  CLUS_3                           7                            37
  CLUS_4                          14                            48
  CLUS_5                          12                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = DEL PEAK 52(XQ21.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XQ21.33) MUTATED       48      2      7      0
  DEL PEAK 52(XQ21.33) WILD-TYPE    186    151     44      3
D88V1, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           48                            186
  CLUS_2                            2                            151
  CLUS_3                            7                             44
  CLUS_4                            0                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 52(XQ21.33) MUTATED       17     10      2     15      5
  DEL PEAK 52(XQ21.33) WILD-TYPE     28    100     49     85     82
D88V2, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           17                             28
  CLUS_2                           10                            100
  CLUS_3                            2                             49
  CLUS_4                           15                             85
  CLUS_5                            5                             82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 52(XQ21.33) MUTATED        5     16     13     10      9
  DEL PEAK 52(XQ21.33) WILD-TYPE     25     76     69     83     50
D88V3, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                           16                             76
  CLUS_3                           13                             69
  CLUS_4                           10                             83
  CLUS_5                            9                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XQ21.33) MUTATED       27      6     14      6
  DEL PEAK 52(XQ21.33) WILD-TYPE    113     52     64     74
D88V4, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           27                            113
  CLUS_2                            6                             52
  CLUS_3                           14                             64
  CLUS_4                            6                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 52(XQ21.33) MUTATED       19      6     10     12      7
  DEL PEAK 52(XQ21.33) WILD-TYPE     75     88     83     70     43
D88V5, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           19                             75
  CLUS_2                            6                             88
  CLUS_3                           10                             83
  CLUS_4                           12                             70
  CLUS_5                            7                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 52(XQ21.33) MUTATED       17      6     21     10
  DEL PEAK 52(XQ21.33) WILD-TYPE     92     76    114     77
D88V6, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           17                             92
  CLUS_2                            6                             76
  CLUS_3                           21                            114
  CLUS_4                           10                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 52(XQ21.33) MUTATED        8      7     10     11      5     15
  DEL PEAK 52(XQ21.33) WILD-TYPE     53     59     70    100     45     51
D88V7, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                            8                             53
  CLUS_2                            7                             59
  CLUS_3                           10                             70
  CLUS_4                           11                            100
  CLUS_5                            5                             45
  CLUS_6                           15                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(XQ21.33) MUTATED       33      4     19
  DEL PEAK 52(XQ21.33) WILD-TYPE    210     78     90
D88V8, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           33                            210
  CLUS_2                            4                             78
  CLUS_3                           19                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 52(XQ21.33) MUTATED       24     12      7
  DEL PEAK 52(XQ21.33) WILD-TYPE    123    109     66
D88V9, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           24                            123
  CLUS_2                           12                            109
  CLUS_3                            7                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 52(XQ21.33) MUTATED       13      5      3     11     11
  DEL PEAK 52(XQ21.33) WILD-TYPE     90     67     41     51     49
D88V10, multiclass
        clus
vv       DEL PEAK 52(XQ21.33) MUTATED DEL PEAK 52(XQ21.33) WILD-TYPE
  CLUS_1                           13                             90
  CLUS_2                            5                             67
  CLUS_3                            3                             41
  CLUS_4                           11                             51
  CLUS_5                           11                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
