Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	PID_ERBB1_RECEPTOR_PROXIMAL_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_SIGNALING_BY_FGFR_MUTANTS.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_IL_2_SIGNALING.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_ACUTE_MYELOID_LEUKEMIA.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	PID_ERBB2ERBB3PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	PID_PI3KCIPATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_SIGNALING_BY_SCF_KIT.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	PID_PDGFRBPATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	PID_EPHBFWDPATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_VEGF_SIGNALING_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_FC_EPSILON_RI_SIGNALING_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_RENAL_CELL_CARCINOMA.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_NATURAL_KILLER_CELL_MEDIATED_CYTOTOXICITY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	PID_ERBB1_INTERNALIZATION_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	PID_ERBB1_DOWNSTREAM_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_B_CELL_RECEPTOR_SIGNALING_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_NEUROTROPHIN_SIGNALING_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	PID_CXCR3PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_SIGNALING_BY_THE_B_CELL_RECEPTOR_BCR.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_PATHWAYS_IN_CANCER.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	basic_data_info.txt	enriched_pathway_genset_info	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	MutSig2CV.input.genenames.txt	enriched_pathway_hypergeometricTest_input	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	MutSig2CV.input.genenames.txt	enriched_pathway_hypergeometricTest_input	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	heatmap.png	enriched_pathways_hypergeometricTest_result	Level_4	png	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	heatmap.pdf	enriched_pathways_hypergeometricTest	Level_4	pdf	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	PID_ERBB1_RECEPTOR_PROXIMAL_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_SIGNALING_BY_FGFR_MUTANTS.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_IL_2_SIGNALING.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_ACUTE_MYELOID_LEUKEMIA.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	PID_ERBB2ERBB3PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	PID_PI3KCIPATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_SIGNALING_BY_SCF_KIT.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	PID_PDGFRBPATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	PID_EPHBFWDPATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_VEGF_SIGNALING_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_FC_EPSILON_RI_SIGNALING_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_RENAL_CELL_CARCINOMA.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_NATURAL_KILLER_CELL_MEDIATED_CYTOTOXICITY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	PID_ERBB1_INTERNALIZATION_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	PID_ERBB1_DOWNSTREAM_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_B_CELL_RECEPTOR_SIGNALING_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_NEUROTROPHIN_SIGNALING_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	PID_CXCR3PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_SIGNALING_BY_THE_B_CELL_RECEPTOR_BCR.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_PATHWAYS_IN_CANCER.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	basic_data_info.txt	enriched_pathway_genset_info	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	MutSig2CV.input.genenames.txt	enriched_pathway_hypergeometricTest_input	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	MutSig2CV.input.genenames.txt	enriched_pathway_hypergeometricTest_input	Level_4	text	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	heatmap.png	enriched_pathways_hypergeometricTest_result	Level_4	png	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	heatmap.pdf	enriched_pathways_hypergeometricTest	Level_4	pdf	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_TGCT-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
