[1] "ofn"        "-oTTGCT-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/TGCT-TP/22541961/TGCT-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/TGCT-TP/22533662/transformed.cor.cli.txt"

nPatients in clinical file=150, in cluster file=150, common to both=150
[1]  50 150
[1] "AMP PEAK  1(1Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE 
                           69                            81 
  AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE 
                           69                            81 
[1] "AMP PEAK  2(2P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE 
                           62                            88 
  AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE 
                           62                            88 
[1] "AMP PEAK  3(3P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                         34                         116 
  AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE 
                         34                         116 
[1] "AMP PEAK  4(3Q27.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3Q27.3) MUTATED AMP PEAK  4(3Q27.3) WILD-TYPE 
                           49                           101 
  AMP PEAK  4(3Q27.3) MUTATED AMP PEAK  4(3Q27.3) WILD-TYPE 
                           49                           101 
[1] "AMP PEAK  5(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         20                         130 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         20                         130 
[1] "AMP PEAK  6(7P22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7P22.1) MUTATED AMP PEAK  6(7P22.1) WILD-TYPE 
                          126                            24 
  AMP PEAK  6(7P22.1) MUTATED AMP PEAK  6(7P22.1) WILD-TYPE 
                          126                            24 
[1] "AMP PEAK  7(7Q11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(7Q11.22) MUTATED AMP PEAK  7(7Q11.22) WILD-TYPE 
                           120                             30 
  AMP PEAK  7(7Q11.22) MUTATED AMP PEAK  7(7Q11.22) WILD-TYPE 
                           120                             30 
[1] "AMP PEAK  8(8Q11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(8Q11.23) MUTATED AMP PEAK  8(8Q11.23) WILD-TYPE 
                           122                             28 
  AMP PEAK  8(8Q11.23) MUTATED AMP PEAK  8(8Q11.23) WILD-TYPE 
                           122                             28 
[1] "AMP PEAK  9(8Q23.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8Q23.3) MUTATED AMP PEAK  9(8Q23.3) WILD-TYPE 
                          108                            42 
  AMP PEAK  9(8Q23.3) MUTATED AMP PEAK  9(8Q23.3) WILD-TYPE 
                          108                            42 
[1] "AMP PEAK 10(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE 
                            145                               5 
  AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE 
                            145                               5 
[1] "AMP PEAK 11(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                           147                              3 
  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                           147                              3 
[1] "AMP PEAK 12(12P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE 
                            144                               6 
  AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE 
                            144                               6 
[1] "AMP PEAK 13(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE 
                         100                           50 
  AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE 
                         100                           50 
[1] "AMP PEAK 14(16Q21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(16Q21) MUTATED AMP PEAK 14(16Q21) WILD-TYPE 
                          21                          129 
  AMP PEAK 14(16Q21) MUTATED AMP PEAK 14(16Q21) WILD-TYPE 
                          21                          129 
[1] "AMP PEAK 15(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(20Q11.21) MUTATED AMP PEAK 15(20Q11.21) WILD-TYPE 
                             51                              99 
  AMP PEAK 15(20Q11.21) MUTATED AMP PEAK 15(20Q11.21) WILD-TYPE 
                             51                              99 
[1] "AMP PEAK 16(22Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(22Q11.21) MUTATED AMP PEAK 16(22Q11.21) WILD-TYPE 
                             57                              93 
  AMP PEAK 16(22Q11.21) MUTATED AMP PEAK 16(22Q11.21) WILD-TYPE 
                             57                              93 
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            34                            116 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            34                            116 
[1] "DEL PEAK  2(1P31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           27                           123 
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           27                           123 
[1] "DEL PEAK  3(1Q42.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE 
                             9                            141 
  DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE 
                             9                            141 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           15                           135 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           15                           135 
[1] "DEL PEAK  5(3P26.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE 
                           41                           109 
  DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE 
                           41                           109 
[1] "DEL PEAK  6(4Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE 
                          110                            40 
  DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE 
                          110                            40 
[1] "DEL PEAK  7(5P15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE 
                          101                            49 
  DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE 
                          101                            49 
[1] "DEL PEAK  8(5P14.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE 
                          103                            47 
  DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE 
                          103                            47 
[1] "DEL PEAK  9(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE 
                          105                            45 
  DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE 
                          105                            45 
[1] "DEL PEAK 10(6P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE 
                           24                           126 
  DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE 
                           24                           126 
[1] "DEL PEAK 11(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         26                         124 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         26                         124 
[1] "DEL PEAK 12(7Q11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE 
                             4                            146 
  DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE 
                             4                            146 
[1] "DEL PEAK 13(7Q35) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7Q35) MUTATED DEL PEAK 13(7Q35) WILD-TYPE 
                         13                         137 
  DEL PEAK 13(7Q35) MUTATED DEL PEAK 13(7Q35) WILD-TYPE 
                         13                         137 
[1] "DEL PEAK 14(9P24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE 
                           70                            80 
  DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE 
                           70                            80 
[1] "DEL PEAK 15(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                         66                          84 
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                         66                          84 
[1] "DEL PEAK 16(9Q33.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE 
                           60                            90 
  DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE 
                           60                            90 
[1] "DEL PEAK 17(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE 
                           60                            90 
  DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE 
                           60                            90 
[1] "DEL PEAK 18(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                            84                             66 
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                            84                             66 
[1] "DEL PEAK 19(10Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE 
                            71                             79 
  DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE 
                            71                             79 
[1] "DEL PEAK 20(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE 
                            76                             74 
  DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE 
                            76                             74 
[1] "DEL PEAK 21(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                            94                             56 
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                            94                             56 
[1] "DEL PEAK 22(11P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE 
                          99                           51 
  DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE 
                          99                           51 
[1] "DEL PEAK 23(11Q12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE 
                           114                             36 
  DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE 
                           114                             36 
[1] "DEL PEAK 24(11Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(11Q24.3) MUTATED DEL PEAK 24(11Q24.3) WILD-TYPE 
                           122                             28 
  DEL PEAK 24(11Q24.3) MUTATED DEL PEAK 24(11Q24.3) WILD-TYPE 
                           122                             28 
[1] "DEL PEAK 25(13Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE 
                         113                           37 
  DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE 
                         113                           37 
[1] "DEL PEAK 26(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                            66                             84 
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                            66                             84 
[1] "DEL PEAK 27(16Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(16Q23.3) MUTATED DEL PEAK 27(16Q23.3) WILD-TYPE 
                            67                             83 
  DEL PEAK 27(16Q23.3) MUTATED DEL PEAK 27(16Q23.3) WILD-TYPE 
                            67                             83 
[1] "DEL PEAK 28(18P11.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(18P11.32) MUTATED DEL PEAK 28(18P11.32) WILD-TYPE 
                            118                              32 
  DEL PEAK 28(18P11.32) MUTATED DEL PEAK 28(18P11.32) WILD-TYPE 
                            118                              32 
[1] "DEL PEAK 29(18Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(18Q22.3) MUTATED DEL PEAK 29(18Q22.3) WILD-TYPE 
                           125                             25 
  DEL PEAK 29(18Q22.3) MUTATED DEL PEAK 29(18Q22.3) WILD-TYPE 
                           125                             25 
[1] "DEL PEAK 30(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE 
                             58                              92 
  DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE 
                             58                              92 
[1] "DEL PEAK 31(19Q13.42) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(19Q13.42) MUTATED DEL PEAK 31(19Q13.42) WILD-TYPE 
                             57                              93 
  DEL PEAK 31(19Q13.42) MUTATED DEL PEAK 31(19Q13.42) WILD-TYPE 
                             57                              93 
[1] "DEL PEAK 32(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE 
                            29                            121 
  DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE 
                            29                            121 
[1] "DEL PEAK 33(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE 
                           28                           122 
  DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE 
                           28                           122 
[1] "DEL PEAK 34(XQ27.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(XQ27.3) MUTATED DEL PEAK 34(XQ27.3) WILD-TYPE 
                           30                           120 
  DEL PEAK 34(XQ27.3) MUTATED DEL PEAK 34(XQ27.3) WILD-TYPE 
                           30                           120 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 150 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 150 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=7, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.2) MUTATED       16     23     28      2
  AMP PEAK  1(1Q21.2) WILD-TYPE     32     11     26     12
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          16                            32
  CLUS_2                          23                            11
  CLUS_3                          28                            26
  CLUS_4                           2                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q21.2) MUTATED       17     12     15     25
  AMP PEAK  1(1Q21.2) WILD-TYPE     28      8     19     26
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          17                            28
  CLUS_2                          12                             8
  CLUS_3                          15                            19
  CLUS_4                          25                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.2) MUTATED       22      2      4     16     12
  AMP PEAK  1(1Q21.2) WILD-TYPE     23      6      6     21      6
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          22                            23
  CLUS_2                           2                             6
  CLUS_3                           4                             6
  CLUS_4                          16                            21
  CLUS_5                          12                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       23     12     21
  AMP PEAK  1(1Q21.2) WILD-TYPE     28     13     21
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          23                            28
  CLUS_2                          12                            13
  CLUS_3                          21                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.2) MUTATED       11     19     16     12      2      9
  AMP PEAK  1(1Q21.2) WILD-TYPE     23     11     17     10      6     13
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q21.2) MUTATED        0
  AMP PEAK  1(1Q21.2) WILD-TYPE      1
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          11                            23
  CLUS_2                          19                            11
  CLUS_3                          16                            17
  CLUS_4                          12                            10
  CLUS_5                           2                             6
  CLUS_6                           9                            13
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.2) MUTATED       12     19      3     16      3     13
  AMP PEAK  1(1Q21.2) WILD-TYPE     31      8      9      8      5     10
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q21.2) MUTATED        3
  AMP PEAK  1(1Q21.2) WILD-TYPE     10
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          12                            31
  CLUS_2                          19                             8
  CLUS_3                           3                             9
  CLUS_4                          16                             8
  CLUS_5                           3                             5
  CLUS_6                          13                            10
  CLUS_7                           3                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       18     31     20
  AMP PEAK  1(1Q21.2) WILD-TYPE     33     26     22
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          18                            33
  CLUS_2                          31                            26
  CLUS_3                          20                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       31     18     20
  AMP PEAK  1(1Q21.2) WILD-TYPE     39     20     22
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          31                            39
  CLUS_2                          18                            20
  CLUS_3                          20                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.2) MUTATED       30     19     20
  AMP PEAK  1(1Q21.2) WILD-TYPE     39     17     25
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          30                            39
  CLUS_2                          19                            17
  CLUS_3                          20                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q21.2) MUTATED       10     21     11     14      8      5
  AMP PEAK  1(1Q21.2) WILD-TYPE     24     15      8     13     11     10
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          10                            24
  CLUS_2                          21                            15
  CLUS_3                          11                             8
  CLUS_4                          14                            13
  CLUS_5                           8                            11
  CLUS_6                           5                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(2P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P24.1) MUTATED       11     17     29      5
  AMP PEAK  2(2P24.1) WILD-TYPE     37     17     25      9
D2V1, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          11                            37
  CLUS_2                          17                            17
  CLUS_3                          29                            25
  CLUS_4                           5                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P24.1) MUTATED        9      7     14     32
  AMP PEAK  2(2P24.1) WILD-TYPE     36     13     20     19
D2V2, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                           9                            36
  CLUS_2                           7                            13
  CLUS_3                          14                            20
  CLUS_4                          32                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(2P24.1) MUTATED       14      1      4     19      8
  AMP PEAK  2(2P24.1) WILD-TYPE     31      7      6     18     10
D2V3, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          14                            31
  CLUS_2                           1                             7
  CLUS_3                           4                             6
  CLUS_4                          19                            18
  CLUS_5                           8                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P24.1) MUTATED       15     10     21
  AMP PEAK  2(2P24.1) WILD-TYPE     36     15     21
D2V4, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          15                            36
  CLUS_2                          10                            15
  CLUS_3                          21                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2P24.1) MUTATED        8     14     12     10      3     15
  AMP PEAK  2(2P24.1) WILD-TYPE     26     16     21     12      5      7
                               vv
clus                            CLUS_7
  AMP PEAK  2(2P24.1) MUTATED        0
  AMP PEAK  2(2P24.1) WILD-TYPE      1
D2V5, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                           8                            26
  CLUS_2                          14                            16
  CLUS_3                          12                            21
  CLUS_4                          10                            12
  CLUS_5                           3                             5
  CLUS_6                          15                             7
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2P24.1) MUTATED       10     13      6     14      2      9
  AMP PEAK  2(2P24.1) WILD-TYPE     33     14      6     10      6     14
                               vv
clus                            CLUS_7
  AMP PEAK  2(2P24.1) MUTATED        8
  AMP PEAK  2(2P24.1) WILD-TYPE      5
D2V6, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          10                            33
  CLUS_2                          13                            14
  CLUS_3                           6                             6
  CLUS_4                          14                            10
  CLUS_5                           2                             6
  CLUS_6                           9                            14
  CLUS_7                           8                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P24.1) MUTATED       15     23     24
  AMP PEAK  2(2P24.1) WILD-TYPE     36     34     18
D2V7, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          15                            36
  CLUS_2                          23                            34
  CLUS_3                          24                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P24.1) MUTATED       23     15     24
  AMP PEAK  2(2P24.1) WILD-TYPE     47     23     18
D2V8, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          23                            47
  CLUS_2                          15                            23
  CLUS_3                          24                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P24.1) MUTATED       22     15     25
  AMP PEAK  2(2P24.1) WILD-TYPE     47     21     20
D2V9, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                          22                            47
  CLUS_2                          15                            21
  CLUS_3                          25                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2P24.1) MUTATED        7     16     10     17      5      7
  AMP PEAK  2(2P24.1) WILD-TYPE     27     20      9     10     14      8
D2V10, multiclass
        clus
vv       AMP PEAK  2(2P24.1) MUTATED AMP PEAK  2(2P24.1) WILD-TYPE
  CLUS_1                           7                            27
  CLUS_2                          16                            20
  CLUS_3                          10                             9
  CLUS_4                          17                            10
  CLUS_5                           5                            14
  CLUS_6                           7                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3P13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3P13) MUTATED        8      7     19      0
  AMP PEAK  3(3P13) WILD-TYPE     40     27     35     14
D3V1, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         8                          40
  CLUS_2                         7                          27
  CLUS_3                        19                          35
  CLUS_4                         0                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3P13) MUTATED        6      3      9     16
  AMP PEAK  3(3P13) WILD-TYPE     39     17     25     35
D3V2, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         6                          39
  CLUS_2                         3                          17
  CLUS_3                         9                          25
  CLUS_4                        16                          35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3P13) MUTATED        4      0      0     17      6
  AMP PEAK  3(3P13) WILD-TYPE     41      8     10     20     12
D3V3, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         4                          41
  CLUS_2                         0                           8
  CLUS_3                         0                          10
  CLUS_4                        17                          20
  CLUS_5                         6                          12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3P13) MUTATED        4      7     16
  AMP PEAK  3(3P13) WILD-TYPE     47     18     26
D3V4, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         4                          47
  CLUS_2                         7                          18
  CLUS_3                        16                          26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  3(3P13) MUTATED        4      4      7      4      1     14      0
  AMP PEAK  3(3P13) WILD-TYPE     30     26     26     18      7      8      1
D3V5, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         4                          30
  CLUS_2                         4                          26
  CLUS_3                         7                          26
  CLUS_4                         4                          18
  CLUS_5                         1                           7
  CLUS_6                        14                           8
  CLUS_7                         0                           1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  3(3P13) MUTATED        5      4      4      6      2      5      8
  AMP PEAK  3(3P13) WILD-TYPE     38     23      8     18      6     18      5
D3V6, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         5                          38
  CLUS_2                         4                          23
  CLUS_3                         4                           8
  CLUS_4                         6                          18
  CLUS_5                         2                           6
  CLUS_6                         5                          18
  CLUS_7                         8                           5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3P13) MUTATED        8     12     14
  AMP PEAK  3(3P13) WILD-TYPE     43     45     28
D3V7, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         8                          43
  CLUS_2                        12                          45
  CLUS_3                        14                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3P13) MUTATED        9     11     14
  AMP PEAK  3(3P13) WILD-TYPE     61     27     28
D3V8, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         9                          61
  CLUS_2                        11                          27
  CLUS_3                        14                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3P13) MUTATED        9      9     16
  AMP PEAK  3(3P13) WILD-TYPE     60     27     29
D3V9, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         9                          60
  CLUS_2                         9                          27
  CLUS_3                        16                          29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3P13) MUTATED        6      3      7     10      3      5
  AMP PEAK  3(3P13) WILD-TYPE     28     33     12     17     16     10
D3V10, multiclass
        clus
vv       AMP PEAK  3(3P13) MUTATED AMP PEAK  3(3P13) WILD-TYPE
  CLUS_1                         6                          28
  CLUS_2                         3                          33
  CLUS_3                         7                          12
  CLUS_4                        10                          17
  CLUS_5                         3                          16
  CLUS_6                         5                          10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3Q27.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q27.3) MUTATED       13      9     21      6
  AMP PEAK  4(3Q27.3) WILD-TYPE     35     25     33      8
D4V1, multiclass
        clus
vv       AMP PEAK  4(3Q27.3) MUTATED AMP PEAK  4(3Q27.3) WILD-TYPE
  CLUS_1                          13                            35
  CLUS_2                           9                            25
  CLUS_3                          21                            33
  CLUS_4                           6                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q27.3) MUTATED        9      5     16     19
  AMP PEAK  4(3Q27.3) WILD-TYPE     36     15     18     32
D4V2, multiclass
        clus
vv       AMP PEAK  4(3Q27.3) MUTATED AMP PEAK  4(3Q27.3) WILD-TYPE
  CLUS_1                           9                            36
  CLUS_2                           5                            15
  CLUS_3                          16                            18
  CLUS_4                          19                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q27.3) MUTATED        6      1      5     18      7
  AMP PEAK  4(3Q27.3) WILD-TYPE     39      7      5     19     11
D4V3, multiclass
        clus
vv       AMP PEAK  4(3Q27.3) MUTATED AMP PEAK  4(3Q27.3) WILD-TYPE
  CLUS_1                           6                            39
  CLUS_2                           1                             7
  CLUS_3                           5                             5
  CLUS_4                          18                            19
  CLUS_5                           7                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q27.3) MUTATED        7     11     19
  AMP PEAK  4(3Q27.3) WILD-TYPE     44     14     23
D4V4, multiclass
        clus
vv       AMP PEAK  4(3Q27.3) MUTATED AMP PEAK  4(3Q27.3) WILD-TYPE
  CLUS_1                           7                            44
  CLUS_2                          11                            14
  CLUS_3                          19                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q27.3) MUTATED        2     10     13      7      3     14
  AMP PEAK  4(3Q27.3) WILD-TYPE     32     20     20     15      5      8
                               vv
clus                            CLUS_7
  AMP PEAK  4(3Q27.3) MUTATED        0
  AMP PEAK  4(3Q27.3) WILD-TYPE      1
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q27.3) MUTATED AMP PEAK  4(3Q27.3) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                          10                            20
  CLUS_3                          13                            20
  CLUS_4                           7                            15
  CLUS_5                           3                             5
  CLUS_6                          14                             8
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q27.3) MUTATED        5      8      6      9      4     10
  AMP PEAK  4(3Q27.3) WILD-TYPE     38     19      6     15      4     13
                               vv
clus                            CLUS_7
  AMP PEAK  4(3Q27.3) MUTATED        7
  AMP PEAK  4(3Q27.3) WILD-TYPE      6
D4V6, multiclass
        clus
vv       AMP PEAK  4(3Q27.3) MUTATED AMP PEAK  4(3Q27.3) WILD-TYPE
  CLUS_1                           5                            38
  CLUS_2                           8                            19
  CLUS_3                           6                             6
  CLUS_4                           9                            15
  CLUS_5                           4                             4
  CLUS_6                          10                            13
  CLUS_7                           7                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q27.3) MUTATED        7     24     18
  AMP PEAK  4(3Q27.3) WILD-TYPE     44     33     24
D4V7, multiclass
        clus
vv       AMP PEAK  4(3Q27.3) MUTATED AMP PEAK  4(3Q27.3) WILD-TYPE
  CLUS_1                           7                            44
  CLUS_2                          24                            33
  CLUS_3                          18                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q27.3) MUTATED       13     18     18
  AMP PEAK  4(3Q27.3) WILD-TYPE     57     20     24
D4V8, multiclass
        clus
vv       AMP PEAK  4(3Q27.3) MUTATED AMP PEAK  4(3Q27.3) WILD-TYPE
  CLUS_1                          13                            57
  CLUS_2                          18                            20
  CLUS_3                          18                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q27.3) MUTATED       12     17     20
  AMP PEAK  4(3Q27.3) WILD-TYPE     57     19     25
D4V9, multiclass
        clus
vv       AMP PEAK  4(3Q27.3) MUTATED AMP PEAK  4(3Q27.3) WILD-TYPE
  CLUS_1                          12                            57
  CLUS_2                          17                            19
  CLUS_3                          20                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q27.3) MUTATED        4      9      9     11      8      8
  AMP PEAK  4(3Q27.3) WILD-TYPE     30     27     10     16     11      7
D4V10, multiclass
        clus
vv       AMP PEAK  4(3Q27.3) MUTATED AMP PEAK  4(3Q27.3) WILD-TYPE
  CLUS_1                           4                            30
  CLUS_2                           9                            27
  CLUS_3                           9                            10
  CLUS_4                          11                            16
  CLUS_5                           8                            11
  CLUS_6                           8                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        1     13      4      2
  AMP PEAK  5(4Q12) WILD-TYPE     47     21     50     12
D5V1, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         1                          47
  CLUS_2                        13                          21
  CLUS_3                         4                          50
  CLUS_4                         2                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        6      4      4      6
  AMP PEAK  5(4Q12) WILD-TYPE     39     16     30     45
D5V2, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         6                          39
  CLUS_2                         4                          16
  CLUS_3                         4                          30
  CLUS_4                         6                          45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(4Q12) MUTATED        8      1      1      3      2
  AMP PEAK  5(4Q12) WILD-TYPE     37      7      9     34     16
D5V3, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         8                          37
  CLUS_2                         1                           7
  CLUS_3                         1                           9
  CLUS_4                         3                          34
  CLUS_5                         2                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        9      2      4
  AMP PEAK  5(4Q12) WILD-TYPE     42     23     38
D5V4, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         9                          42
  CLUS_2                         2                          23
  CLUS_3                         4                          38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  5(4Q12) MUTATED        4      7      4      3      2      0      0
  AMP PEAK  5(4Q12) WILD-TYPE     30     23     29     19      6     22      1
D5V5, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         4                          30
  CLUS_2                         7                          23
  CLUS_3                         4                          29
  CLUS_4                         3                          19
  CLUS_5                         2                           6
  CLUS_6                         0                          22
  CLUS_7                         0                           1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  5(4Q12) MUTATED        5      7      0      2      1      4      1
  AMP PEAK  5(4Q12) WILD-TYPE     38     20     12     22      7     19     12
D5V6, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         5                          38
  CLUS_2                         7                          20
  CLUS_3                         0                          12
  CLUS_4                         2                          22
  CLUS_5                         1                           7
  CLUS_6                         4                          19
  CLUS_7                         1                          12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        7     10      3
  AMP PEAK  5(4Q12) WILD-TYPE     44     47     39
D5V7, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         7                          44
  CLUS_2                        10                          47
  CLUS_3                         3                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       12      5      3
  AMP PEAK  5(4Q12) WILD-TYPE     58     33     39
D5V8, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        12                          58
  CLUS_2                         5                          33
  CLUS_3                         3                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       12      5      3
  AMP PEAK  5(4Q12) WILD-TYPE     57     31     42
D5V9, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        12                          57
  CLUS_2                         5                          31
  CLUS_3                         3                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(4Q12) MUTATED        4      8      1      3      4      0
  AMP PEAK  5(4Q12) WILD-TYPE     30     28     18     24     15     15
D5V10, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         4                          30
  CLUS_2                         8                          28
  CLUS_3                         1                          18
  CLUS_4                         3                          24
  CLUS_5                         4                          15
  CLUS_6                         0                          15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(7P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P22.1) MUTATED       36     31     46     13
  AMP PEAK  6(7P22.1) WILD-TYPE     12      3      8      1
D6V1, multiclass
        clus
vv       AMP PEAK  6(7P22.1) MUTATED AMP PEAK  6(7P22.1) WILD-TYPE
  CLUS_1                          36                            12
  CLUS_2                          31                             3
  CLUS_3                          46                             8
  CLUS_4                          13                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P22.1) MUTATED       40     15     32     39
  AMP PEAK  6(7P22.1) WILD-TYPE      5      5      2     12
D6V2, multiclass
        clus
vv       AMP PEAK  6(7P22.1) MUTATED AMP PEAK  6(7P22.1) WILD-TYPE
  CLUS_1                          40                             5
  CLUS_2                          15                             5
  CLUS_3                          32                             2
  CLUS_4                          39                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(7P22.1) MUTATED       38      8      6     29     17
  AMP PEAK  6(7P22.1) WILD-TYPE      7      0      4      8      1
D6V3, multiclass
        clus
vv       AMP PEAK  6(7P22.1) MUTATED AMP PEAK  6(7P22.1) WILD-TYPE
  CLUS_1                          38                             7
  CLUS_2                           8                             0
  CLUS_3                           6                             4
  CLUS_4                          29                             8
  CLUS_5                          17                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P22.1) MUTATED       44     17     37
  AMP PEAK  6(7P22.1) WILD-TYPE      7      8      5
D6V4, multiclass
        clus
vv       AMP PEAK  6(7P22.1) MUTATED AMP PEAK  6(7P22.1) WILD-TYPE
  CLUS_1                          44                             7
  CLUS_2                          17                             8
  CLUS_3                          37                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7P22.1) MUTATED       32     26     29     14      7     18
  AMP PEAK  6(7P22.1) WILD-TYPE      2      4      4      8      1      4
                               vv
clus                            CLUS_7
  AMP PEAK  6(7P22.1) MUTATED        0
  AMP PEAK  6(7P22.1) WILD-TYPE      1
D6V5, multiclass
        clus
vv       AMP PEAK  6(7P22.1) MUTATED AMP PEAK  6(7P22.1) WILD-TYPE
  CLUS_1                          32                             2
  CLUS_2                          26                             4
  CLUS_3                          29                             4
  CLUS_4                          14                             8
  CLUS_5                           7                             1
  CLUS_6                          18                             4
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7P22.1) MUTATED       39     23      9     17      7     22
  AMP PEAK  6(7P22.1) WILD-TYPE      4      4      3      7      1      1
                               vv
clus                            CLUS_7
  AMP PEAK  6(7P22.1) MUTATED        9
  AMP PEAK  6(7P22.1) WILD-TYPE      4
D6V6, multiclass
        clus
vv       AMP PEAK  6(7P22.1) MUTATED AMP PEAK  6(7P22.1) WILD-TYPE
  CLUS_1                          39                             4
  CLUS_2                          23                             4
  CLUS_3                           9                             3
  CLUS_4                          17                             7
  CLUS_5                           7                             1
  CLUS_6                          22                             1
  CLUS_7                           9                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P22.1) MUTATED       45     52     29
  AMP PEAK  6(7P22.1) WILD-TYPE      6      5     13
D6V7, multiclass
        clus
vv       AMP PEAK  6(7P22.1) MUTATED AMP PEAK  6(7P22.1) WILD-TYPE
  CLUS_1                          45                             6
  CLUS_2                          52                             5
  CLUS_3                          29                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P22.1) MUTATED       62     35     29
  AMP PEAK  6(7P22.1) WILD-TYPE      8      3     13
D6V8, multiclass
        clus
vv       AMP PEAK  6(7P22.1) MUTATED AMP PEAK  6(7P22.1) WILD-TYPE
  CLUS_1                          62                             8
  CLUS_2                          35                             3
  CLUS_3                          29                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P22.1) MUTATED       61     33     32
  AMP PEAK  6(7P22.1) WILD-TYPE      8      3     13
D6V9, multiclass
        clus
vv       AMP PEAK  6(7P22.1) MUTATED AMP PEAK  6(7P22.1) WILD-TYPE
  CLUS_1                          61                             8
  CLUS_2                          33                             3
  CLUS_3                          32                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7P22.1) MUTATED       32     30     17     18     18     11
  AMP PEAK  6(7P22.1) WILD-TYPE      2      6      2      9      1      4
D6V10, multiclass
        clus
vv       AMP PEAK  6(7P22.1) MUTATED AMP PEAK  6(7P22.1) WILD-TYPE
  CLUS_1                          32                             2
  CLUS_2                          30                             6
  CLUS_3                          17                             2
  CLUS_4                          18                             9
  CLUS_5                          18                             1
  CLUS_6                          11                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(7Q11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q11.22) MUTATED       35     30     41     14
  AMP PEAK  7(7Q11.22) WILD-TYPE     13      4     13      0
D7V1, multiclass
        clus
vv       AMP PEAK  7(7Q11.22) MUTATED AMP PEAK  7(7Q11.22) WILD-TYPE
  CLUS_1                           35                             13
  CLUS_2                           30                              4
  CLUS_3                           41                             13
  CLUS_4                           14                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q11.22) MUTATED       39     16     31     34
  AMP PEAK  7(7Q11.22) WILD-TYPE      6      4      3     17
D7V2, multiclass
        clus
vv       AMP PEAK  7(7Q11.22) MUTATED AMP PEAK  7(7Q11.22) WILD-TYPE
  CLUS_1                           39                              6
  CLUS_2                           16                              4
  CLUS_3                           31                              3
  CLUS_4                           34                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(7Q11.22) MUTATED       39      8      7     22     16
  AMP PEAK  7(7Q11.22) WILD-TYPE      6      0      3     15      2
D7V3, multiclass
        clus
vv       AMP PEAK  7(7Q11.22) MUTATED AMP PEAK  7(7Q11.22) WILD-TYPE
  CLUS_1                           39                              6
  CLUS_2                            8                              0
  CLUS_3                            7                              3
  CLUS_4                           22                             15
  CLUS_5                           16                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q11.22) MUTATED       45     18     29
  AMP PEAK  7(7Q11.22) WILD-TYPE      6      7     13
D7V4, multiclass
        clus
vv       AMP PEAK  7(7Q11.22) MUTATED AMP PEAK  7(7Q11.22) WILD-TYPE
  CLUS_1                           45                              6
  CLUS_2                           18                              7
  CLUS_3                           29                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7Q11.22) MUTATED       32     27     29      9      7     16
  AMP PEAK  7(7Q11.22) WILD-TYPE      2      3      4     13      1      6
                                vv
clus                             CLUS_7
  AMP PEAK  7(7Q11.22) MUTATED        0
  AMP PEAK  7(7Q11.22) WILD-TYPE      1
D7V5, multiclass
        clus
vv       AMP PEAK  7(7Q11.22) MUTATED AMP PEAK  7(7Q11.22) WILD-TYPE
  CLUS_1                           32                              2
  CLUS_2                           27                              3
  CLUS_3                           29                              4
  CLUS_4                            9                             13
  CLUS_5                            7                              1
  CLUS_6                           16                              6
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7Q11.22) MUTATED       39     24      8     14      7     21
  AMP PEAK  7(7Q11.22) WILD-TYPE      4      3      4     10      1      2
                                vv
clus                             CLUS_7
  AMP PEAK  7(7Q11.22) MUTATED        7
  AMP PEAK  7(7Q11.22) WILD-TYPE      6
D7V6, multiclass
        clus
vv       AMP PEAK  7(7Q11.22) MUTATED AMP PEAK  7(7Q11.22) WILD-TYPE
  CLUS_1                           39                              4
  CLUS_2                           24                              3
  CLUS_3                            8                              4
  CLUS_4                           14                             10
  CLUS_5                            7                              1
  CLUS_6                           21                              2
  CLUS_7                            7                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q11.22) MUTATED       45     51     24
  AMP PEAK  7(7Q11.22) WILD-TYPE      6      6     18
D7V7, multiclass
        clus
vv       AMP PEAK  7(7Q11.22) MUTATED AMP PEAK  7(7Q11.22) WILD-TYPE
  CLUS_1                           45                              6
  CLUS_2                           51                              6
  CLUS_3                           24                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q11.22) MUTATED       63     33     24
  AMP PEAK  7(7Q11.22) WILD-TYPE      7      5     18
D7V8, multiclass
        clus
vv       AMP PEAK  7(7Q11.22) MUTATED AMP PEAK  7(7Q11.22) WILD-TYPE
  CLUS_1                           63                              7
  CLUS_2                           33                              5
  CLUS_3                           24                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q11.22) MUTATED       62     32     26
  AMP PEAK  7(7Q11.22) WILD-TYPE      7      4     19
D7V9, multiclass
        clus
vv       AMP PEAK  7(7Q11.22) MUTATED AMP PEAK  7(7Q11.22) WILD-TYPE
  CLUS_1                           62                              7
  CLUS_2                           32                              4
  CLUS_3                           26                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7Q11.22) MUTATED       31     32     15     14     18     10
  AMP PEAK  7(7Q11.22) WILD-TYPE      3      4      4     13      1      5
D7V10, multiclass
        clus
vv       AMP PEAK  7(7Q11.22) MUTATED AMP PEAK  7(7Q11.22) WILD-TYPE
  CLUS_1                           31                              3
  CLUS_2                           32                              4
  CLUS_3                           15                              4
  CLUS_4                           14                             13
  CLUS_5                           18                              1
  CLUS_6                           10                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(8Q11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q11.23) MUTATED       33     34     41     14
  AMP PEAK  8(8Q11.23) WILD-TYPE     15      0     13      0
D8V1, multiclass
        clus
vv       AMP PEAK  8(8Q11.23) MUTATED AMP PEAK  8(8Q11.23) WILD-TYPE
  CLUS_1                           33                             15
  CLUS_2                           34                              0
  CLUS_3                           41                             13
  CLUS_4                           14                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q11.23) MUTATED       40     20     26     36
  AMP PEAK  8(8Q11.23) WILD-TYPE      5      0      8     15
D8V2, multiclass
        clus
vv       AMP PEAK  8(8Q11.23) MUTATED AMP PEAK  8(8Q11.23) WILD-TYPE
  CLUS_1                           40                              5
  CLUS_2                           20                              0
  CLUS_3                           26                              8
  CLUS_4                           36                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(8Q11.23) MUTATED       44      6      6     25     14
  AMP PEAK  8(8Q11.23) WILD-TYPE      1      2      4     12      4
D8V3, multiclass
        clus
vv       AMP PEAK  8(8Q11.23) MUTATED AMP PEAK  8(8Q11.23) WILD-TYPE
  CLUS_1                           44                              1
  CLUS_2                            6                              2
  CLUS_3                            6                              4
  CLUS_4                           25                             12
  CLUS_5                           14                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q11.23) MUTATED       49     15     31
  AMP PEAK  8(8Q11.23) WILD-TYPE      2     10     11
D8V4, multiclass
        clus
vv       AMP PEAK  8(8Q11.23) MUTATED AMP PEAK  8(8Q11.23) WILD-TYPE
  CLUS_1                           49                              2
  CLUS_2                           15                             10
  CLUS_3                           31                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8Q11.23) MUTATED       33     30     27     17      5      9
  AMP PEAK  8(8Q11.23) WILD-TYPE      1      0      6      5      3     13
                                vv
clus                             CLUS_7
  AMP PEAK  8(8Q11.23) MUTATED        1
  AMP PEAK  8(8Q11.23) WILD-TYPE      0
D8V5, multiclass
        clus
vv       AMP PEAK  8(8Q11.23) MUTATED AMP PEAK  8(8Q11.23) WILD-TYPE
  CLUS_1                           33                              1
  CLUS_2                           30                              0
  CLUS_3                           27                              6
  CLUS_4                           17                              5
  CLUS_5                            5                              3
  CLUS_6                            9                             13
  CLUS_7                            1                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8Q11.23) MUTATED       40     27      8     18      6     19
  AMP PEAK  8(8Q11.23) WILD-TYPE      3      0      4      6      2      4
                                vv
clus                             CLUS_7
  AMP PEAK  8(8Q11.23) MUTATED        4
  AMP PEAK  8(8Q11.23) WILD-TYPE      9
D8V6, multiclass
        clus
vv       AMP PEAK  8(8Q11.23) MUTATED AMP PEAK  8(8Q11.23) WILD-TYPE
  CLUS_1                           40                              3
  CLUS_2                           27                              0
  CLUS_3                            8                              4
  CLUS_4                           18                              6
  CLUS_5                            6                              2
  CLUS_6                           19                              4
  CLUS_7                            4                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q11.23) MUTATED       48     49     25
  AMP PEAK  8(8Q11.23) WILD-TYPE      3      8     17
D8V7, multiclass
        clus
vv       AMP PEAK  8(8Q11.23) MUTATED AMP PEAK  8(8Q11.23) WILD-TYPE
  CLUS_1                           48                              3
  CLUS_2                           49                              8
  CLUS_3                           25                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q11.23) MUTATED       67     30     25
  AMP PEAK  8(8Q11.23) WILD-TYPE      3      8     17
D8V8, multiclass
        clus
vv       AMP PEAK  8(8Q11.23) MUTATED AMP PEAK  8(8Q11.23) WILD-TYPE
  CLUS_1                           67                              3
  CLUS_2                           30                              8
  CLUS_3                           25                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q11.23) MUTATED       66     28     28
  AMP PEAK  8(8Q11.23) WILD-TYPE      3      8     17
D8V9, multiclass
        clus
vv       AMP PEAK  8(8Q11.23) MUTATED AMP PEAK  8(8Q11.23) WILD-TYPE
  CLUS_1                           66                              3
  CLUS_2                           28                              8
  CLUS_3                           28                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8Q11.23) MUTATED       31     36     16     16     14      9
  AMP PEAK  8(8Q11.23) WILD-TYPE      3      0      3     11      5      6
D8V10, multiclass
        clus
vv       AMP PEAK  8(8Q11.23) MUTATED AMP PEAK  8(8Q11.23) WILD-TYPE
  CLUS_1                           31                              3
  CLUS_2                           36                              0
  CLUS_3                           16                              3
  CLUS_4                           16                             11
  CLUS_5                           14                              5
  CLUS_6                            9                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(8Q23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q23.3) MUTATED       32     29     35     12
  AMP PEAK  9(8Q23.3) WILD-TYPE     16      5     19      2
D9V1, multiclass
        clus
vv       AMP PEAK  9(8Q23.3) MUTATED AMP PEAK  9(8Q23.3) WILD-TYPE
  CLUS_1                          32                            16
  CLUS_2                          29                             5
  CLUS_3                          35                            19
  CLUS_4                          12                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q23.3) MUTATED       41     15     22     30
  AMP PEAK  9(8Q23.3) WILD-TYPE      4      5     12     21
D9V2, multiclass
        clus
vv       AMP PEAK  9(8Q23.3) MUTATED AMP PEAK  9(8Q23.3) WILD-TYPE
  CLUS_1                          41                             4
  CLUS_2                          15                             5
  CLUS_3                          22                            12
  CLUS_4                          30                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(8Q23.3) MUTATED       38      7      6     20     12
  AMP PEAK  9(8Q23.3) WILD-TYPE      7      1      4     17      6
D9V3, multiclass
        clus
vv       AMP PEAK  9(8Q23.3) MUTATED AMP PEAK  9(8Q23.3) WILD-TYPE
  CLUS_1                          38                             7
  CLUS_2                           7                             1
  CLUS_3                           6                             4
  CLUS_4                          20                            17
  CLUS_5                          12                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q23.3) MUTATED       43     14     26
  AMP PEAK  9(8Q23.3) WILD-TYPE      8     11     16
D9V4, multiclass
        clus
vv       AMP PEAK  9(8Q23.3) MUTATED AMP PEAK  9(8Q23.3) WILD-TYPE
  CLUS_1                          43                             8
  CLUS_2                          14                            11
  CLUS_3                          26                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8Q23.3) MUTATED       32     24     24     13      5      9
  AMP PEAK  9(8Q23.3) WILD-TYPE      2      6      9      9      3     13
                               vv
clus                            CLUS_7
  AMP PEAK  9(8Q23.3) MUTATED        1
  AMP PEAK  9(8Q23.3) WILD-TYPE      0
D9V5, multiclass
        clus
vv       AMP PEAK  9(8Q23.3) MUTATED AMP PEAK  9(8Q23.3) WILD-TYPE
  CLUS_1                          32                             2
  CLUS_2                          24                             6
  CLUS_3                          24                             9
  CLUS_4                          13                             9
  CLUS_5                           5                             3
  CLUS_6                           9                            13
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8Q23.3) MUTATED       38     22      9     15      5     16
  AMP PEAK  9(8Q23.3) WILD-TYPE      5      5      3      9      3      7
                               vv
clus                            CLUS_7
  AMP PEAK  9(8Q23.3) MUTATED        3
  AMP PEAK  9(8Q23.3) WILD-TYPE     10
D9V6, multiclass
        clus
vv       AMP PEAK  9(8Q23.3) MUTATED AMP PEAK  9(8Q23.3) WILD-TYPE
  CLUS_1                          38                             5
  CLUS_2                          22                             5
  CLUS_3                           9                             3
  CLUS_4                          15                             9
  CLUS_5                           5                             3
  CLUS_6                          16                             7
  CLUS_7                           3                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q23.3) MUTATED       46     42     20
  AMP PEAK  9(8Q23.3) WILD-TYPE      5     15     22
D9V7, multiclass
        clus
vv       AMP PEAK  9(8Q23.3) MUTATED AMP PEAK  9(8Q23.3) WILD-TYPE
  CLUS_1                          46                             5
  CLUS_2                          42                            15
  CLUS_3                          20                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q23.3) MUTATED       60     28     20
  AMP PEAK  9(8Q23.3) WILD-TYPE     10     10     22
D9V8, multiclass
        clus
vv       AMP PEAK  9(8Q23.3) MUTATED AMP PEAK  9(8Q23.3) WILD-TYPE
  CLUS_1                          60                            10
  CLUS_2                          28                            10
  CLUS_3                          20                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q23.3) MUTATED       60     23     25
  AMP PEAK  9(8Q23.3) WILD-TYPE      9     13     20
D9V9, multiclass
        clus
vv       AMP PEAK  9(8Q23.3) MUTATED AMP PEAK  9(8Q23.3) WILD-TYPE
  CLUS_1                          60                             9
  CLUS_2                          23                            13
  CLUS_3                          25                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8Q23.3) MUTATED       30     30     13     14     13      8
  AMP PEAK  9(8Q23.3) WILD-TYPE      4      6      6     13      6      7
D9V10, multiclass
        clus
vv       AMP PEAK  9(8Q23.3) MUTATED AMP PEAK  9(8Q23.3) WILD-TYPE
  CLUS_1                          30                             4
  CLUS_2                          30                             6
  CLUS_3                          13                             6
  CLUS_4                          14                            13
  CLUS_5                          13                             6
  CLUS_6                           8                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12P13.33) MUTATED       45     32     54     14
  AMP PEAK 10(12P13.33) WILD-TYPE      3      2      0      0
D10V1, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            45                               3
  CLUS_2                            32                               2
  CLUS_3                            54                               0
  CLUS_4                            14                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12P13.33) MUTATED       42     19     34     50
  AMP PEAK 10(12P13.33) WILD-TYPE      3      1      0      1
D10V2, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            42                               3
  CLUS_2                            19                               1
  CLUS_3                            34                               0
  CLUS_4                            50                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(12P13.33) MUTATED       41      7     10     37     18
  AMP PEAK 10(12P13.33) WILD-TYPE      4      1      0      0      0
D10V3, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            41                               4
  CLUS_2                             7                               1
  CLUS_3                            10                               0
  CLUS_4                            37                               0
  CLUS_5                            18                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P13.33) MUTATED       46     25     42
  AMP PEAK 10(12P13.33) WILD-TYPE      5      0      0
D10V4, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            46                               5
  CLUS_2                            25                               0
  CLUS_3                            42                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(12P13.33) MUTATED       32     28     33     22      7     22
  AMP PEAK 10(12P13.33) WILD-TYPE      2      2      0      0      1      0
                                 vv
clus                              CLUS_7
  AMP PEAK 10(12P13.33) MUTATED        1
  AMP PEAK 10(12P13.33) WILD-TYPE      0
D10V5, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            32                               2
  CLUS_2                            28                               2
  CLUS_3                            33                               0
  CLUS_4                            22                               0
  CLUS_5                             7                               1
  CLUS_6                            22                               0
  CLUS_7                             1                               0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(12P13.33) MUTATED       40     25     12     24      8     23
  AMP PEAK 10(12P13.33) WILD-TYPE      3      2      0      0      0      0
                                 vv
clus                              CLUS_7
  AMP PEAK 10(12P13.33) MUTATED       13
  AMP PEAK 10(12P13.33) WILD-TYPE      0
D10V6, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            40                               3
  CLUS_2                            25                               2
  CLUS_3                            12                               0
  CLUS_4                            24                               0
  CLUS_5                             8                               0
  CLUS_6                            23                               0
  CLUS_7                            13                               0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P13.33) MUTATED       48     55     42
  AMP PEAK 10(12P13.33) WILD-TYPE      3      2      0
D10V7, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            48                               3
  CLUS_2                            55                               2
  CLUS_3                            42                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P13.33) MUTATED       65     38     42
  AMP PEAK 10(12P13.33) WILD-TYPE      5      0      0
D10V8, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            65                               5
  CLUS_2                            38                               0
  CLUS_3                            42                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P13.33) MUTATED       64     36     45
  AMP PEAK 10(12P13.33) WILD-TYPE      5      0      0
D10V9, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            64                               5
  CLUS_2                            36                               0
  CLUS_3                            45                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(12P13.33) MUTATED       31     34     19     27     19     15
  AMP PEAK 10(12P13.33) WILD-TYPE      3      2      0      0      0      0
D10V10, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            31                               3
  CLUS_2                            34                               2
  CLUS_3                            19                               0
  CLUS_4                            27                               0
  CLUS_5                            19                               0
  CLUS_6                            15                               0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P12.1) MUTATED       45     34     54     14
  AMP PEAK 11(12P12.1) WILD-TYPE      3      0      0      0
D11V1, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           45                              3
  CLUS_2                           34                              0
  CLUS_3                           54                              0
  CLUS_4                           14                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P12.1) MUTATED       42     20     34     51
  AMP PEAK 11(12P12.1) WILD-TYPE      3      0      0      0
D11V2, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           42                              3
  CLUS_2                           20                              0
  CLUS_3                           34                              0
  CLUS_4                           51                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12P12.1) MUTATED       43      7     10     37     18
  AMP PEAK 11(12P12.1) WILD-TYPE      2      1      0      0      0
D11V3, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           43                              2
  CLUS_2                            7                              1
  CLUS_3                           10                              0
  CLUS_4                           37                              0
  CLUS_5                           18                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED       48     25     42
  AMP PEAK 11(12P12.1) WILD-TYPE      3      0      0
D11V4, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           48                              3
  CLUS_2                           25                              0
  CLUS_3                           42                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P12.1) MUTATED       32     30     33     22      7     22
  AMP PEAK 11(12P12.1) WILD-TYPE      2      0      0      0      1      0
                                vv
clus                             CLUS_7
  AMP PEAK 11(12P12.1) MUTATED        1
  AMP PEAK 11(12P12.1) WILD-TYPE      0
D11V5, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           32                              2
  CLUS_2                           30                              0
  CLUS_3                           33                              0
  CLUS_4                           22                              0
  CLUS_5                            7                              1
  CLUS_6                           22                              0
  CLUS_7                            1                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P12.1) MUTATED       40     27     12     24      8     23
  AMP PEAK 11(12P12.1) WILD-TYPE      3      0      0      0      0      0
                                vv
clus                             CLUS_7
  AMP PEAK 11(12P12.1) MUTATED       13
  AMP PEAK 11(12P12.1) WILD-TYPE      0
D11V6, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           40                              3
  CLUS_2                           27                              0
  CLUS_3                           12                              0
  CLUS_4                           24                              0
  CLUS_5                            8                              0
  CLUS_6                           23                              0
  CLUS_7                           13                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED       48     57     42
  AMP PEAK 11(12P12.1) WILD-TYPE      3      0      0
D11V7, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           48                              3
  CLUS_2                           57                              0
  CLUS_3                           42                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED       67     38     42
  AMP PEAK 11(12P12.1) WILD-TYPE      3      0      0
D11V8, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           67                              3
  CLUS_2                           38                              0
  CLUS_3                           42                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED       66     36     45
  AMP PEAK 11(12P12.1) WILD-TYPE      3      0      0
D11V9, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           66                              3
  CLUS_2                           36                              0
  CLUS_3                           45                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P12.1) MUTATED       31     36     19     27     19     15
  AMP PEAK 11(12P12.1) WILD-TYPE      3      0      0      0      0      0
D11V10, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           31                              3
  CLUS_2                           36                              0
  CLUS_3                           19                              0
  CLUS_4                           27                              0
  CLUS_5                           19                              0
  CLUS_6                           15                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(12P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12P11.21) MUTATED       45     31     54     14
  AMP PEAK 12(12P11.21) WILD-TYPE      3      3      0      0
D12V1, multiclass
        clus
vv       AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE
  CLUS_1                            45                               3
  CLUS_2                            31                               3
  CLUS_3                            54                               0
  CLUS_4                            14                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12P11.21) MUTATED       41     19     34     50
  AMP PEAK 12(12P11.21) WILD-TYPE      4      1      0      1
D12V2, multiclass
        clus
vv       AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE
  CLUS_1                            41                               4
  CLUS_2                            19                               1
  CLUS_3                            34                               0
  CLUS_4                            50                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(12P11.21) MUTATED       41      7     10     37     18
  AMP PEAK 12(12P11.21) WILD-TYPE      4      1      0      0      0
D12V3, multiclass
        clus
vv       AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE
  CLUS_1                            41                               4
  CLUS_2                             7                               1
  CLUS_3                            10                               0
  CLUS_4                            37                               0
  CLUS_5                            18                               0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P11.21) MUTATED       46     25     42
  AMP PEAK 12(12P11.21) WILD-TYPE      5      0      0
D12V4, multiclass
        clus
vv       AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE
  CLUS_1                            46                               5
  CLUS_2                            25                               0
  CLUS_3                            42                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(12P11.21) MUTATED       31     28     33     22      7     22
  AMP PEAK 12(12P11.21) WILD-TYPE      3      2      0      0      1      0
                                 vv
clus                              CLUS_7
  AMP PEAK 12(12P11.21) MUTATED        1
  AMP PEAK 12(12P11.21) WILD-TYPE      0
D12V5, multiclass
        clus
vv       AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE
  CLUS_1                            31                               3
  CLUS_2                            28                               2
  CLUS_3                            33                               0
  CLUS_4                            22                               0
  CLUS_5                             7                               1
  CLUS_6                            22                               0
  CLUS_7                             1                               0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(12P11.21) MUTATED       39     25     12     24      8     23
  AMP PEAK 12(12P11.21) WILD-TYPE      4      2      0      0      0      0
                                 vv
clus                              CLUS_7
  AMP PEAK 12(12P11.21) MUTATED       13
  AMP PEAK 12(12P11.21) WILD-TYPE      0
D12V6, multiclass
        clus
vv       AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE
  CLUS_1                            39                               4
  CLUS_2                            25                               2
  CLUS_3                            12                               0
  CLUS_4                            24                               0
  CLUS_5                             8                               0
  CLUS_6                            23                               0
  CLUS_7                            13                               0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P11.21) MUTATED       47     55     42
  AMP PEAK 12(12P11.21) WILD-TYPE      4      2      0
D12V7, multiclass
        clus
vv       AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE
  CLUS_1                            47                               4
  CLUS_2                            55                               2
  CLUS_3                            42                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P11.21) MUTATED       64     38     42
  AMP PEAK 12(12P11.21) WILD-TYPE      6      0      0
D12V8, multiclass
        clus
vv       AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE
  CLUS_1                            64                               6
  CLUS_2                            38                               0
  CLUS_3                            42                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P11.21) MUTATED       63     36     45
  AMP PEAK 12(12P11.21) WILD-TYPE      6      0      0
D12V9, multiclass
        clus
vv       AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE
  CLUS_1                            63                               6
  CLUS_2                            36                               0
  CLUS_3                            45                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(12P11.21) MUTATED       30     34     19     27     19     15
  AMP PEAK 12(12P11.21) WILD-TYPE      4      2      0      0      0      0
D12V10, multiclass
        clus
vv       AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE
  CLUS_1                            30                               4
  CLUS_2                            34                               2
  CLUS_3                            19                               0
  CLUS_4                            27                               0
  CLUS_5                            19                               0
  CLUS_6                            15                               0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12Q15) MUTATED       30     24     37      9
  AMP PEAK 13(12Q15) WILD-TYPE     18     10     17      5
D13V1, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         30                           18
  CLUS_2                         24                           10
  CLUS_3                         37                           17
  CLUS_4                          9                            5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12Q15) MUTATED       28     14     24     34
  AMP PEAK 13(12Q15) WILD-TYPE     17      6     10     17
D13V2, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         28                           17
  CLUS_2                         14                            6
  CLUS_3                         24                           10
  CLUS_4                         34                           17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(12Q15) MUTATED       31      5      7     21     15
  AMP PEAK 13(12Q15) WILD-TYPE     14      3      3     16      3
D13V3, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         31                           14
  CLUS_2                          5                            3
  CLUS_3                          7                            3
  CLUS_4                         21                           16
  CLUS_5                         15                            3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q15) MUTATED       34     17     28
  AMP PEAK 13(12Q15) WILD-TYPE     17      8     14
D13V4, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         34                           17
  CLUS_2                         17                            8
  CLUS_3                         28                           14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 13(12Q15) MUTATED       23     22     24     11      4     15      1
  AMP PEAK 13(12Q15) WILD-TYPE     11      8      9     11      4      7      0
D13V5, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         23                           11
  CLUS_2                         22                            8
  CLUS_3                         24                            9
  CLUS_4                         11                           11
  CLUS_5                          4                            4
  CLUS_6                         15                            7
  CLUS_7                          1                            0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 13(12Q15) MUTATED       29     19      6     15      5     18      8
  AMP PEAK 13(12Q15) WILD-TYPE     14      8      6      9      3      5      5
D13V6, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         29                           14
  CLUS_2                         19                            8
  CLUS_3                          6                            6
  CLUS_4                         15                            9
  CLUS_5                          5                            3
  CLUS_6                         18                            5
  CLUS_7                          8                            5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q15) MUTATED       34     41     25
  AMP PEAK 13(12Q15) WILD-TYPE     17     16     17
D13V7, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         34                           17
  CLUS_2                         41                           16
  CLUS_3                         25                           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q15) MUTATED       48     27     25
  AMP PEAK 13(12Q15) WILD-TYPE     22     11     17
D13V8, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         48                           22
  CLUS_2                         27                           11
  CLUS_3                         25                           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12Q15) MUTATED       47     26     27
  AMP PEAK 13(12Q15) WILD-TYPE     22     10     18
D13V9, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         47                           22
  CLUS_2                         26                           10
  CLUS_3                         27                           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(12Q15) MUTATED       21     27     13     18     14      7
  AMP PEAK 13(12Q15) WILD-TYPE     13      9      6      9      5      8
D13V10, multiclass
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  CLUS_1                         21                           13
  CLUS_2                         27                            9
  CLUS_3                         13                            6
  CLUS_4                         18                            9
  CLUS_5                         14                            5
  CLUS_6                          7                            8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(16Q21) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(16Q21) MUTATED        3      3     15      0
  AMP PEAK 14(16Q21) WILD-TYPE     45     31     39     14
D14V1, multiclass
        clus
vv       AMP PEAK 14(16Q21) MUTATED AMP PEAK 14(16Q21) WILD-TYPE
  CLUS_1                          3                           45
  CLUS_2                          3                           31
  CLUS_3                         15                           39
  CLUS_4                          0                           14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(16Q21) MUTATED        1      4      5     11
  AMP PEAK 14(16Q21) WILD-TYPE     44     16     29     40
D14V2, multiclass
        clus
vv       AMP PEAK 14(16Q21) MUTATED AMP PEAK 14(16Q21) WILD-TYPE
  CLUS_1                          1                           44
  CLUS_2                          4                           16
  CLUS_3                          5                           29
  CLUS_4                         11                           40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(16Q21) MUTATED        1      0      2     11      2
  AMP PEAK 14(16Q21) WILD-TYPE     44      8      8     26     16
D14V3, multiclass
        clus
vv       AMP PEAK 14(16Q21) MUTATED AMP PEAK 14(16Q21) WILD-TYPE
  CLUS_1                          1                           44
  CLUS_2                          0                            8
  CLUS_3                          2                            8
  CLUS_4                         11                           26
  CLUS_5                          2                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16Q21) MUTATED        1      7      8
  AMP PEAK 14(16Q21) WILD-TYPE     50     18     34
D14V4, multiclass
        clus
vv       AMP PEAK 14(16Q21) MUTATED AMP PEAK 14(16Q21) WILD-TYPE
  CLUS_1                          1                           50
  CLUS_2                          7                           18
  CLUS_3                          8                           34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(16Q21) MUTATED        1      3      5      5      0      7      0
  AMP PEAK 14(16Q21) WILD-TYPE     33     27     28     17      8     15      1
D14V5, multiclass
        clus
vv       AMP PEAK 14(16Q21) MUTATED AMP PEAK 14(16Q21) WILD-TYPE
  CLUS_1                          1                           33
  CLUS_2                          3                           27
  CLUS_3                          5                           28
  CLUS_4                          5                           17
  CLUS_5                          0                            8
  CLUS_6                          7                           15
  CLUS_7                          0                            1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(16Q21) MUTATED        1      3      3      8      0      3      3
  AMP PEAK 14(16Q21) WILD-TYPE     42     24      9     16      8     20     10
D14V6, multiclass
        clus
vv       AMP PEAK 14(16Q21) MUTATED AMP PEAK 14(16Q21) WILD-TYPE
  CLUS_1                          1                           42
  CLUS_2                          3                           24
  CLUS_3                          3                            9
  CLUS_4                          8                           16
  CLUS_5                          0                            8
  CLUS_6                          3                           20
  CLUS_7                          3                           10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16Q21) MUTATED        1      9     11
  AMP PEAK 14(16Q21) WILD-TYPE     50     48     31
D14V7, multiclass
        clus
vv       AMP PEAK 14(16Q21) MUTATED AMP PEAK 14(16Q21) WILD-TYPE
  CLUS_1                          1                           50
  CLUS_2                          9                           48
  CLUS_3                         11                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16Q21) MUTATED        4      6     11
  AMP PEAK 14(16Q21) WILD-TYPE     66     32     31
D14V8, multiclass
        clus
vv       AMP PEAK 14(16Q21) MUTATED AMP PEAK 14(16Q21) WILD-TYPE
  CLUS_1                          4                           66
  CLUS_2                          6                           32
  CLUS_3                         11                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16Q21) MUTATED        4      4     13
  AMP PEAK 14(16Q21) WILD-TYPE     65     32     32
D14V9, multiclass
        clus
vv       AMP PEAK 14(16Q21) MUTATED AMP PEAK 14(16Q21) WILD-TYPE
  CLUS_1                          4                           65
  CLUS_2                          4                           32
  CLUS_3                         13                           32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(16Q21) MUTATED        0      4      4      8      1      4
  AMP PEAK 14(16Q21) WILD-TYPE     34     32     15     19     18     11
D14V10, multiclass
        clus
vv       AMP PEAK 14(16Q21) MUTATED AMP PEAK 14(16Q21) WILD-TYPE
  CLUS_1                          0                           34
  CLUS_2                          4                           32
  CLUS_3                          4                           15
  CLUS_4                          8                           19
  CLUS_5                          1                           18
  CLUS_6                          4                           11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(20Q11.21) MUTATED       11      9     23      8
  AMP PEAK 15(20Q11.21) WILD-TYPE     37     25     31      6
D15V1, multiclass
        clus
vv       AMP PEAK 15(20Q11.21) MUTATED AMP PEAK 15(20Q11.21) WILD-TYPE
  CLUS_1                            11                              37
  CLUS_2                             9                              25
  CLUS_3                            23                              31
  CLUS_4                             8                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(20Q11.21) MUTATED        7      4     14     26
  AMP PEAK 15(20Q11.21) WILD-TYPE     38     16     20     25
D15V2, multiclass
        clus
vv       AMP PEAK 15(20Q11.21) MUTATED AMP PEAK 15(20Q11.21) WILD-TYPE
  CLUS_1                             7                              38
  CLUS_2                             4                              16
  CLUS_3                            14                              20
  CLUS_4                            26                              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(20Q11.21) MUTATED       10      1      6     15     10
  AMP PEAK 15(20Q11.21) WILD-TYPE     35      7      4     22      8
D15V3, multiclass
        clus
vv       AMP PEAK 15(20Q11.21) MUTATED AMP PEAK 15(20Q11.21) WILD-TYPE
  CLUS_1                            10                              35
  CLUS_2                             1                               7
  CLUS_3                             6                               4
  CLUS_4                            15                              22
  CLUS_5                            10                               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(20Q11.21) MUTATED       11     13     18
  AMP PEAK 15(20Q11.21) WILD-TYPE     40     12     24
D15V4, multiclass
        clus
vv       AMP PEAK 15(20Q11.21) MUTATED AMP PEAK 15(20Q11.21) WILD-TYPE
  CLUS_1                            11                              40
  CLUS_2                            13                              12
  CLUS_3                            18                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(20Q11.21) MUTATED        9      6     12      9      2     13
  AMP PEAK 15(20Q11.21) WILD-TYPE     25     24     21     13      6      9
                                 vv
clus                              CLUS_7
  AMP PEAK 15(20Q11.21) MUTATED        0
  AMP PEAK 15(20Q11.21) WILD-TYPE      1
D15V5, multiclass
        clus
vv       AMP PEAK 15(20Q11.21) MUTATED AMP PEAK 15(20Q11.21) WILD-TYPE
  CLUS_1                             9                              25
  CLUS_2                             6                              24
  CLUS_3                            12                              21
  CLUS_4                             9                              13
  CLUS_5                             2                               6
  CLUS_6                            13                               9
  CLUS_7                             0                               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(20Q11.21) MUTATED       11      5      3     14      2      9
  AMP PEAK 15(20Q11.21) WILD-TYPE     32     22      9     10      6     14
                                 vv
clus                              CLUS_7
  AMP PEAK 15(20Q11.21) MUTATED        7
  AMP PEAK 15(20Q11.21) WILD-TYPE      6
D15V6, multiclass
        clus
vv       AMP PEAK 15(20Q11.21) MUTATED AMP PEAK 15(20Q11.21) WILD-TYPE
  CLUS_1                            11                              32
  CLUS_2                             5                              22
  CLUS_3                             3                               9
  CLUS_4                            14                              10
  CLUS_5                             2                               6
  CLUS_6                             9                              14
  CLUS_7                             7                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(20Q11.21) MUTATED       12     17     22
  AMP PEAK 15(20Q11.21) WILD-TYPE     39     40     20
D15V7, multiclass
        clus
vv       AMP PEAK 15(20Q11.21) MUTATED AMP PEAK 15(20Q11.21) WILD-TYPE
  CLUS_1                            12                              39
  CLUS_2                            17                              40
  CLUS_3                            22                              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(20Q11.21) MUTATED       16     13     22
  AMP PEAK 15(20Q11.21) WILD-TYPE     54     25     20
D15V8, multiclass
        clus
vv       AMP PEAK 15(20Q11.21) MUTATED AMP PEAK 15(20Q11.21) WILD-TYPE
  CLUS_1                            16                              54
  CLUS_2                            13                              25
  CLUS_3                            22                              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(20Q11.21) MUTATED       16     12     23
  AMP PEAK 15(20Q11.21) WILD-TYPE     53     24     22
D15V9, multiclass
        clus
vv       AMP PEAK 15(20Q11.21) MUTATED AMP PEAK 15(20Q11.21) WILD-TYPE
  CLUS_1                            16                              53
  CLUS_2                            12                              24
  CLUS_3                            23                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(20Q11.21) MUTATED        6     10      7     15      6      7
  AMP PEAK 15(20Q11.21) WILD-TYPE     28     26     12     12     13      8
D15V10, multiclass
        clus
vv       AMP PEAK 15(20Q11.21) MUTATED AMP PEAK 15(20Q11.21) WILD-TYPE
  CLUS_1                             6                              28
  CLUS_2                            10                              26
  CLUS_3                             7                              12
  CLUS_4                            15                              12
  CLUS_5                             6                              13
  CLUS_6                             7                               8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(22Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(22Q11.21) MUTATED       13     27     12      5
  AMP PEAK 16(22Q11.21) WILD-TYPE     35      7     42      9
D16V1, multiclass
        clus
vv       AMP PEAK 16(22Q11.21) MUTATED AMP PEAK 16(22Q11.21) WILD-TYPE
  CLUS_1                            13                              35
  CLUS_2                            27                               7
  CLUS_3                            12                              42
  CLUS_4                             5                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(22Q11.21) MUTATED       16     13     11     17
  AMP PEAK 16(22Q11.21) WILD-TYPE     29      7     23     34
D16V2, multiclass
        clus
vv       AMP PEAK 16(22Q11.21) MUTATED AMP PEAK 16(22Q11.21) WILD-TYPE
  CLUS_1                            16                              29
  CLUS_2                            13                               7
  CLUS_3                            11                              23
  CLUS_4                            17                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(22Q11.21) MUTATED       24      2      4      8      3
  AMP PEAK 16(22Q11.21) WILD-TYPE     21      6      6     29     15
D16V3, multiclass
        clus
vv       AMP PEAK 16(22Q11.21) MUTATED AMP PEAK 16(22Q11.21) WILD-TYPE
  CLUS_1                            24                              21
  CLUS_2                             2                               6
  CLUS_3                             4                               6
  CLUS_4                             8                              29
  CLUS_5                             3                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(22Q11.21) MUTATED       26      5     10
  AMP PEAK 16(22Q11.21) WILD-TYPE     25     20     32
D16V4, multiclass
        clus
vv       AMP PEAK 16(22Q11.21) MUTATED AMP PEAK 16(22Q11.21) WILD-TYPE
  CLUS_1                            26                              25
  CLUS_2                             5                              20
  CLUS_3                            10                              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(22Q11.21) MUTATED       12     25      9      4      2      5
  AMP PEAK 16(22Q11.21) WILD-TYPE     22      5     24     18      6     17
                                 vv
clus                              CLUS_7
  AMP PEAK 16(22Q11.21) MUTATED        0
  AMP PEAK 16(22Q11.21) WILD-TYPE      1
D16V5, multiclass
        clus
vv       AMP PEAK 16(22Q11.21) MUTATED AMP PEAK 16(22Q11.21) WILD-TYPE
  CLUS_1                            12                              22
  CLUS_2                            25                               5
  CLUS_3                             9                              24
  CLUS_4                             4                              18
  CLUS_5                             2                               6
  CLUS_6                             5                              17
  CLUS_7                             0                               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(22Q11.21) MUTATED       16     23      4      5      1      5
  AMP PEAK 16(22Q11.21) WILD-TYPE     27      4      8     19      7     18
                                 vv
clus                              CLUS_7
  AMP PEAK 16(22Q11.21) MUTATED        3
  AMP PEAK 16(22Q11.21) WILD-TYPE     10
D16V6, multiclass
        clus
vv       AMP PEAK 16(22Q11.21) MUTATED AMP PEAK 16(22Q11.21) WILD-TYPE
  CLUS_1                            16                              27
  CLUS_2                            23                               4
  CLUS_3                             4                               8
  CLUS_4                             5                              19
  CLUS_5                             1                               7
  CLUS_6                             5                              18
  CLUS_7                             3                              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(22Q11.21) MUTATED       24     24      9
  AMP PEAK 16(22Q11.21) WILD-TYPE     27     33     33
D16V7, multiclass
        clus
vv       AMP PEAK 16(22Q11.21) MUTATED AMP PEAK 16(22Q11.21) WILD-TYPE
  CLUS_1                            24                              27
  CLUS_2                            24                              33
  CLUS_3                             9                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(22Q11.21) MUTATED       39      9      9
  AMP PEAK 16(22Q11.21) WILD-TYPE     31     29     33
D16V8, multiclass
        clus
vv       AMP PEAK 16(22Q11.21) MUTATED AMP PEAK 16(22Q11.21) WILD-TYPE
  CLUS_1                            39                              31
  CLUS_2                             9                              29
  CLUS_3                             9                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(22Q11.21) MUTATED       38     10      9
  AMP PEAK 16(22Q11.21) WILD-TYPE     31     26     36
D16V9, multiclass
        clus
vv       AMP PEAK 16(22Q11.21) MUTATED AMP PEAK 16(22Q11.21) WILD-TYPE
  CLUS_1                            38                              31
  CLUS_2                            10                              26
  CLUS_3                             9                              36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(22Q11.21) MUTATED       13     26      6      4      4      4
  AMP PEAK 16(22Q11.21) WILD-TYPE     21     10     13     23     15     11
D16V10, multiclass
        clus
vv       AMP PEAK 16(22Q11.21) MUTATED AMP PEAK 16(22Q11.21) WILD-TYPE
  CLUS_1                            13                              21
  CLUS_2                            26                              10
  CLUS_3                             6                              13
  CLUS_4                             4                              23
  CLUS_5                             4                              15
  CLUS_6                             4                              11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        8      8     14      4
  DEL PEAK  1(1P36.31) WILD-TYPE     40     26     40     10
D17V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            8                             40
  CLUS_2                            8                             26
  CLUS_3                           14                             40
  CLUS_4                            4                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        7      7      4     16
  DEL PEAK  1(1P36.31) WILD-TYPE     38     13     30     35
D17V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            7                             38
  CLUS_2                            7                             13
  CLUS_3                            4                             30
  CLUS_4                           16                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED       12      1      1     12      1
  DEL PEAK  1(1P36.31) WILD-TYPE     33      7      9     25     17
D17V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           12                             33
  CLUS_2                            1                              7
  CLUS_3                            1                              9
  CLUS_4                           12                             25
  CLUS_5                            1                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       13      9      5
  DEL PEAK  1(1P36.31) WILD-TYPE     38     16     37
D17V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           13                             38
  CLUS_2                            9                             16
  CLUS_3                            5                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED        5      9      3      8      1      8
  DEL PEAK  1(1P36.31) WILD-TYPE     29     21     30     14      7     14
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.31) MUTATED        0
  DEL PEAK  1(1P36.31) WILD-TYPE      1
D17V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            5                             29
  CLUS_2                            9                             21
  CLUS_3                            3                             30
  CLUS_4                            8                             14
  CLUS_5                            1                              7
  CLUS_6                            8                             14
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED        8      7      2      9      0      2
  DEL PEAK  1(1P36.31) WILD-TYPE     35     20     10     15      8     21
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.31) MUTATED        6
  DEL PEAK  1(1P36.31) WILD-TYPE      7
D17V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            8                             35
  CLUS_2                            7                             20
  CLUS_3                            2                             10
  CLUS_4                            9                             15
  CLUS_5                            0                              8
  CLUS_6                            2                             21
  CLUS_7                            6                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       12      6     16
  DEL PEAK  1(1P36.31) WILD-TYPE     39     51     26
D17V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           12                             39
  CLUS_2                            6                             51
  CLUS_3                           16                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       15      3     16
  DEL PEAK  1(1P36.31) WILD-TYPE     55     35     26
D17V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           15                             55
  CLUS_2                            3                             35
  CLUS_3                           16                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       15      2     17
  DEL PEAK  1(1P36.31) WILD-TYPE     54     34     28
D17V9, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           15                             54
  CLUS_2                            2                             34
  CLUS_3                           17                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED        7      8      3      9      0      7
  DEL PEAK  1(1P36.31) WILD-TYPE     27     28     16     18     19      8
D17V10, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            7                             27
  CLUS_2                            8                             28
  CLUS_3                            3                             16
  CLUS_4                            9                             18
  CLUS_5                            0                             19
  CLUS_6                            7                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK  2(1P31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED        5      9      7      6
  DEL PEAK  2(1P31.1) WILD-TYPE     43     25     47      8
D18V1, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           5                            43
  CLUS_2                           9                            25
  CLUS_3                           7                            47
  CLUS_4                           6                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P31.1) MUTATED        7      5      3     12
  DEL PEAK  2(1P31.1) WILD-TYPE     38     15     31     39
D18V2, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           7                            38
  CLUS_2                           5                            15
  CLUS_3                           3                            31
  CLUS_4                          12                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P31.1) MUTATED       12      1      1      6      1
  DEL PEAK  2(1P31.1) WILD-TYPE     33      7      9     31     17
D18V3, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          12                            33
  CLUS_2                           1                             7
  CLUS_3                           1                             9
  CLUS_4                           6                            31
  CLUS_5                           1                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       13      5      3
  DEL PEAK  2(1P31.1) WILD-TYPE     38     20     39
D18V4, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          13                            38
  CLUS_2                           5                            20
  CLUS_3                           3                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED        7      8      3      4      1      4
  DEL PEAK  2(1P31.1) WILD-TYPE     27     22     30     18      7     18
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P31.1) MUTATED        0
  DEL PEAK  2(1P31.1) WILD-TYPE      1
D18V5, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           7                            27
  CLUS_2                           8                            22
  CLUS_3                           3                            30
  CLUS_4                           4                            18
  CLUS_5                           1                             7
  CLUS_6                           4                            18
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED       10      6      1      4      0      3
  DEL PEAK  2(1P31.1) WILD-TYPE     33     21     11     20      8     20
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P31.1) MUTATED        3
  DEL PEAK  2(1P31.1) WILD-TYPE     10
D18V6, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          10                            33
  CLUS_2                           6                            21
  CLUS_3                           1                            11
  CLUS_4                           4                            20
  CLUS_5                           0                             8
  CLUS_6                           3                            20
  CLUS_7                           3                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       15      4      8
  DEL PEAK  2(1P31.1) WILD-TYPE     36     53     34
D18V7, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          15                            36
  CLUS_2                           4                            53
  CLUS_3                           8                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       16      3      8
  DEL PEAK  2(1P31.1) WILD-TYPE     54     35     34
D18V8, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          16                            54
  CLUS_2                           3                            35
  CLUS_3                           8                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       16      2      9
  DEL PEAK  2(1P31.1) WILD-TYPE     53     34     36
D18V9, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          16                            53
  CLUS_2                           2                            34
  CLUS_3                           9                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED        8      8      1      4      2      4
  DEL PEAK  2(1P31.1) WILD-TYPE     26     28     18     23     17     11
D18V10, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           8                            26
  CLUS_2                           8                            28
  CLUS_3                           1                            18
  CLUS_4                           4                            23
  CLUS_5                           2                            17
  CLUS_6                           4                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK  3(1Q42.12) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q42.12) MUTATED        0      3      5      1
  DEL PEAK  3(1Q42.12) WILD-TYPE     48     31     49     13
D19V1, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            0                             48
  CLUS_2                            3                             31
  CLUS_3                            5                             49
  CLUS_4                            1                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q42.12) MUTATED        0      3      2      4
  DEL PEAK  3(1Q42.12) WILD-TYPE     45     17     32     47
D19V2, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            0                             45
  CLUS_2                            3                             17
  CLUS_3                            2                             32
  CLUS_4                            4                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q42.12) MUTATED        5      0      0      2      1
  DEL PEAK  3(1Q42.12) WILD-TYPE     40      8     10     35     17
D19V3, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            5                             40
  CLUS_2                            0                              8
  CLUS_3                            0                             10
  CLUS_4                            2                             35
  CLUS_5                            1                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.12) MUTATED        5      0      3
  DEL PEAK  3(1Q42.12) WILD-TYPE     46     25     39
D19V4, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            5                             46
  CLUS_2                            0                             25
  CLUS_3                            3                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q42.12) MUTATED        2      4      2      0      0      1
  DEL PEAK  3(1Q42.12) WILD-TYPE     32     26     31     22      8     21
                                vv
clus                             CLUS_7
  DEL PEAK  3(1Q42.12) MUTATED        0
  DEL PEAK  3(1Q42.12) WILD-TYPE      1
D19V5, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            2                             32
  CLUS_2                            4                             26
  CLUS_3                            2                             31
  CLUS_4                            0                             22
  CLUS_5                            0                              8
  CLUS_6                            1                             21
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q42.12) MUTATED        2      4      2      0      0      1
  DEL PEAK  3(1Q42.12) WILD-TYPE     41     23     10     24      8     22
                                vv
clus                             CLUS_7
  DEL PEAK  3(1Q42.12) MUTATED        0
  DEL PEAK  3(1Q42.12) WILD-TYPE     13
D19V6, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            2                             41
  CLUS_2                            4                             23
  CLUS_3                            2                             10
  CLUS_4                            0                             24
  CLUS_5                            0                              8
  CLUS_6                            1                             22
  CLUS_7                            0                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.12) MUTATED        4      5      0
  DEL PEAK  3(1Q42.12) WILD-TYPE     47     52     42
D19V7, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            4                             47
  CLUS_2                            5                             52
  CLUS_3                            0                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.12) MUTATED        6      3      0
  DEL PEAK  3(1Q42.12) WILD-TYPE     64     35     42
D19V8, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            6                             64
  CLUS_2                            3                             35
  CLUS_3                            0                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.12) MUTATED        6      1      2
  DEL PEAK  3(1Q42.12) WILD-TYPE     63     35     43
D19V9, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            6                             63
  CLUS_2                            1                             35
  CLUS_3                            2                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q42.12) MUTATED        0      6      2      0      0      1
  DEL PEAK  3(1Q42.12) WILD-TYPE     34     30     17     27     19     14
D19V10, multiclass
        clus
vv       DEL PEAK  3(1Q42.12) MUTATED DEL PEAK  3(1Q42.12) WILD-TYPE
  CLUS_1                            0                             34
  CLUS_2                            6                             30
  CLUS_3                            2                             17
  CLUS_4                            0                             27
  CLUS_5                            0                             19
  CLUS_6                            1                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        3      3      8      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     45     31     46     13
D20V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           3                            45
  CLUS_2                           3                            31
  CLUS_3                           8                            46
  CLUS_4                           1                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        2      0      8      5
  DEL PEAK  4(2Q37.3) WILD-TYPE     43     20     26     46
D20V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                            43
  CLUS_2                           0                            20
  CLUS_3                           8                            26
  CLUS_4                           5                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED        3      0      1      4      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     42      8      9     33     14
D20V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           3                            42
  CLUS_2                           0                             8
  CLUS_3                           1                             9
  CLUS_4                           4                            33
  CLUS_5                           4                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        3      2      7
  DEL PEAK  4(2Q37.3) WILD-TYPE     48     23     35
D20V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           3                            48
  CLUS_2                           2                            23
  CLUS_3                           7                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        2      2      7      1      0      3
  DEL PEAK  4(2Q37.3) WILD-TYPE     32     28     26     21      8     19
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        0
  DEL PEAK  4(2Q37.3) WILD-TYPE      1
D20V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                           2                            28
  CLUS_3                           7                            26
  CLUS_4                           1                            21
  CLUS_5                           0                             8
  CLUS_6                           3                            19
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        2      2      2      2      0      6
  DEL PEAK  4(2Q37.3) WILD-TYPE     41     25     10     22      8     17
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        1
  DEL PEAK  4(2Q37.3) WILD-TYPE     12
D20V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                            41
  CLUS_2                           2                            25
  CLUS_3                           2                            10
  CLUS_4                           2                            22
  CLUS_5                           0                             8
  CLUS_6                           6                            17
  CLUS_7                           1                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        3      8      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     48     49     38
D20V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           3                            48
  CLUS_2                           8                            49
  CLUS_3                           4                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        4      7      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     66     31     38
D20V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           4                            66
  CLUS_2                           7                            31
  CLUS_3                           4                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        4      7      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     65     29     41
D20V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           4                            65
  CLUS_2                           7                            29
  CLUS_3                           4                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        2      2      4      2      4      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     32     34     15     25     15     14
D20V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                           2                            34
  CLUS_3                           4                            15
  CLUS_4                           2                            25
  CLUS_5                           4                            15
  CLUS_6                           1                            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK  5(3P26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P26.2) MUTATED       11      8     13      9
  DEL PEAK  5(3P26.2) WILD-TYPE     37     26     41      5
D21V1, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          11                            37
  CLUS_2                           8                            26
  CLUS_3                          13                            41
  CLUS_4                           9                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P26.2) MUTATED       14      5     16      6
  DEL PEAK  5(3P26.2) WILD-TYPE     31     15     18     45
D21V2, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          14                            31
  CLUS_2                           5                            15
  CLUS_3                          16                            18
  CLUS_4                           6                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P26.2) MUTATED       10      4      2      4      6
  DEL PEAK  5(3P26.2) WILD-TYPE     35      4      8     33     12
D21V3, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          10                            35
  CLUS_2                           4                             4
  CLUS_3                           2                             8
  CLUS_4                           4                            33
  CLUS_5                           6                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.2) MUTATED       14      4      8
  DEL PEAK  5(3P26.2) WILD-TYPE     37     21     34
D21V4, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          14                            37
  CLUS_2                           4                            21
  CLUS_3                           8                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P26.2) MUTATED       14      6     14      2      3      2
  DEL PEAK  5(3P26.2) WILD-TYPE     20     24     19     20      5     20
                               vv
clus                            CLUS_7
  DEL PEAK  5(3P26.2) MUTATED        0
  DEL PEAK  5(3P26.2) WILD-TYPE      1
D21V5, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          14                            20
  CLUS_2                           6                            24
  CLUS_3                          14                            19
  CLUS_4                           2                            20
  CLUS_5                           3                             5
  CLUS_6                           2                            20
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P26.2) MUTATED       17      5      2      2      2     12
  DEL PEAK  5(3P26.2) WILD-TYPE     26     22     10     22      6     11
                               vv
clus                            CLUS_7
  DEL PEAK  5(3P26.2) MUTATED        1
  DEL PEAK  5(3P26.2) WILD-TYPE     12
D21V6, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          17                            26
  CLUS_2                           5                            22
  CLUS_3                           2                            10
  CLUS_4                           2                            22
  CLUS_5                           2                             6
  CLUS_6                          12                            11
  CLUS_7                           1                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.2) MUTATED       15     22      4
  DEL PEAK  5(3P26.2) WILD-TYPE     36     35     38
D21V7, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          15                            36
  CLUS_2                          22                            35
  CLUS_3                           4                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.2) MUTATED       22     15      4
  DEL PEAK  5(3P26.2) WILD-TYPE     48     23     38
D21V8, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                          15                            23
  CLUS_3                           4                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P26.2) MUTATED       22     15      4
  DEL PEAK  5(3P26.2) WILD-TYPE     47     21     41
D21V9, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          22                            47
  CLUS_2                          15                            21
  CLUS_3                           4                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P26.2) MUTATED       15      7      5      1     11      2
  DEL PEAK  5(3P26.2) WILD-TYPE     19     29     14     26      8     13
D21V10, multiclass
        clus
vv       DEL PEAK  5(3P26.2) MUTATED DEL PEAK  5(3P26.2) WILD-TYPE
  CLUS_1                          15                            19
  CLUS_2                           7                            29
  CLUS_3                           5                            14
  CLUS_4                           1                            26
  CLUS_5                          11                             8
  CLUS_6                           2                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK  6(4Q22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q22.2) MUTATED       29     29     39     13
  DEL PEAK  6(4Q22.2) WILD-TYPE     19      5     15      1
D22V1, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          29                            19
  CLUS_2                          29                             5
  CLUS_3                          39                            15
  CLUS_4                          13                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q22.2) MUTATED       31     18     28     33
  DEL PEAK  6(4Q22.2) WILD-TYPE     14      2      6     18
D22V2, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          31                            14
  CLUS_2                          18                             2
  CLUS_3                          28                             6
  CLUS_4                          33                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q22.2) MUTATED       33      6      6     25     15
  DEL PEAK  6(4Q22.2) WILD-TYPE     12      2      4     12      3
D22V3, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          33                            12
  CLUS_2                           6                             2
  CLUS_3                           6                             4
  CLUS_4                          25                            12
  CLUS_5                          15                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.2) MUTATED       37     16     32
  DEL PEAK  6(4Q22.2) WILD-TYPE     14      9     10
D22V4, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          37                            14
  CLUS_2                          16                             9
  CLUS_3                          32                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q22.2) MUTATED       21     27     29     15      5     12
  DEL PEAK  6(4Q22.2) WILD-TYPE     13      3      4      7      3     10
                               vv
clus                            CLUS_7
  DEL PEAK  6(4Q22.2) MUTATED        1
  DEL PEAK  6(4Q22.2) WILD-TYPE      0
D22V5, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          21                            13
  CLUS_2                          27                             3
  CLUS_3                          29                             4
  CLUS_4                          15                             7
  CLUS_5                           5                             3
  CLUS_6                          12                            10
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q22.2) MUTATED       27     25     10     14      7     21
  DEL PEAK  6(4Q22.2) WILD-TYPE     16      2      2     10      1      2
                               vv
clus                            CLUS_7
  DEL PEAK  6(4Q22.2) MUTATED        6
  DEL PEAK  6(4Q22.2) WILD-TYPE      7
D22V6, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          27                            16
  CLUS_2                          25                             2
  CLUS_3                          10                             2
  CLUS_4                          14                            10
  CLUS_5                           7                             1
  CLUS_6                          21                             2
  CLUS_7                           6                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.2) MUTATED       35     51     24
  DEL PEAK  6(4Q22.2) WILD-TYPE     16      6     18
D22V7, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          35                            16
  CLUS_2                          51                             6
  CLUS_3                          24                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.2) MUTATED       52     34     24
  DEL PEAK  6(4Q22.2) WILD-TYPE     18      4     18
D22V8, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          52                            18
  CLUS_2                          34                             4
  CLUS_3                          24                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.2) MUTATED       52     31     27
  DEL PEAK  6(4Q22.2) WILD-TYPE     17      5     18
D22V9, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          52                            17
  CLUS_2                          31                             5
  CLUS_3                          27                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q22.2) MUTATED       22     30     15     13     18     12
  DEL PEAK  6(4Q22.2) WILD-TYPE     12      6      4     14      1      3
D22V10, multiclass
        clus
vv       DEL PEAK  6(4Q22.2) MUTATED DEL PEAK  6(4Q22.2) WILD-TYPE
  CLUS_1                          22                            12
  CLUS_2                          30                             6
  CLUS_3                          15                             4
  CLUS_4                          13                            14
  CLUS_5                          18                             1
  CLUS_6                          12                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK  7(5P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.2) MUTATED       32     29     33      7
  DEL PEAK  7(5P15.2) WILD-TYPE     16      5     21      7
D23V1, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          32                            16
  CLUS_2                          29                             5
  CLUS_3                          33                            21
  CLUS_4                           7                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.2) MUTATED       32     16     20     33
  DEL PEAK  7(5P15.2) WILD-TYPE     13      4     14     18
D23V2, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          32                            13
  CLUS_2                          16                             4
  CLUS_3                          20                            14
  CLUS_4                          33                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5P15.2) MUTATED       30      7      4     25      8
  DEL PEAK  7(5P15.2) WILD-TYPE     15      1      6     12     10
D23V3, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          30                            15
  CLUS_2                           7                             1
  CLUS_3                           4                             6
  CLUS_4                          25                            12
  CLUS_5                           8                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.2) MUTATED       35     14     25
  DEL PEAK  7(5P15.2) WILD-TYPE     16     11     17
D23V4, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          35                            16
  CLUS_2                          14                            11
  CLUS_3                          25                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5P15.2) MUTATED       24     24     20     15      4     13
  DEL PEAK  7(5P15.2) WILD-TYPE     10      6     13      7      4      9
                               vv
clus                            CLUS_7
  DEL PEAK  7(5P15.2) MUTATED        1
  DEL PEAK  7(5P15.2) WILD-TYPE      0
D23V5, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          24                            10
  CLUS_2                          24                             6
  CLUS_3                          20                            13
  CLUS_4                          15                             7
  CLUS_5                           4                             4
  CLUS_6                          13                             9
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5P15.2) MUTATED       30     22      9     14      4     14
  DEL PEAK  7(5P15.2) WILD-TYPE     13      5      3     10      4      9
                               vv
clus                            CLUS_7
  DEL PEAK  7(5P15.2) MUTATED        8
  DEL PEAK  7(5P15.2) WILD-TYPE      5
D23V6, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          30                            13
  CLUS_2                          22                             5
  CLUS_3                           9                             3
  CLUS_4                          14                            10
  CLUS_5                           4                             4
  CLUS_6                          14                             9
  CLUS_7                           8                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.2) MUTATED       37     38     26
  DEL PEAK  7(5P15.2) WILD-TYPE     14     19     16
D23V7, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          37                            14
  CLUS_2                          38                            19
  CLUS_3                          26                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.2) MUTATED       52     23     26
  DEL PEAK  7(5P15.2) WILD-TYPE     18     15     16
D23V8, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          52                            18
  CLUS_2                          23                            15
  CLUS_3                          26                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.2) MUTATED       51     22     28
  DEL PEAK  7(5P15.2) WILD-TYPE     18     14     17
D23V9, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          51                            18
  CLUS_2                          22                            14
  CLUS_3                          28                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5P15.2) MUTATED       25     27     10     15     12     12
  DEL PEAK  7(5P15.2) WILD-TYPE      9      9      9     12      7      3
D23V10, multiclass
        clus
vv       DEL PEAK  7(5P15.2) MUTATED DEL PEAK  7(5P15.2) WILD-TYPE
  CLUS_1                          25                             9
  CLUS_2                          27                             9
  CLUS_3                          10                             9
  CLUS_4                          15                            12
  CLUS_5                          12                             7
  CLUS_6                          12                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  8(5P14.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P14.3) MUTATED       31     29     36      7
  DEL PEAK  8(5P14.3) WILD-TYPE     17      5     18      7
D24V1, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          31                            17
  CLUS_2                          29                             5
  CLUS_3                          36                            18
  CLUS_4                           7                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P14.3) MUTATED       32     17     19     35
  DEL PEAK  8(5P14.3) WILD-TYPE     13      3     15     16
D24V2, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          32                            13
  CLUS_2                          17                             3
  CLUS_3                          19                            15
  CLUS_4                          35                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5P14.3) MUTATED       30      7      4     28      7
  DEL PEAK  8(5P14.3) WILD-TYPE     15      1      6      9     11
D24V3, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          30                            15
  CLUS_2                           7                             1
  CLUS_3                           4                             6
  CLUS_4                          28                             9
  CLUS_5                           7                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P14.3) MUTATED       35     15     26
  DEL PEAK  8(5P14.3) WILD-TYPE     16     10     16
D24V4, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          35                            16
  CLUS_2                          15                            10
  CLUS_3                          26                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5P14.3) MUTATED       24     25     19     16      4     14
  DEL PEAK  8(5P14.3) WILD-TYPE     10      5     14      6      4      8
                               vv
clus                            CLUS_7
  DEL PEAK  8(5P14.3) MUTATED        1
  DEL PEAK  8(5P14.3) WILD-TYPE      0
D24V5, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          24                            10
  CLUS_2                          25                             5
  CLUS_3                          19                            14
  CLUS_4                          16                             6
  CLUS_5                           4                             4
  CLUS_6                          14                             8
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5P14.3) MUTATED       30     23      9     15      4     13
  DEL PEAK  8(5P14.3) WILD-TYPE     13      4      3      9      4     10
                               vv
clus                            CLUS_7
  DEL PEAK  8(5P14.3) MUTATED        9
  DEL PEAK  8(5P14.3) WILD-TYPE      4
D24V6, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          30                            13
  CLUS_2                          23                             4
  CLUS_3                           9                             3
  CLUS_4                          15                             9
  CLUS_5                           4                             4
  CLUS_6                          13                            10
  CLUS_7                           9                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P14.3) MUTATED       37     38     28
  DEL PEAK  8(5P14.3) WILD-TYPE     14     19     14
D24V7, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          37                            14
  CLUS_2                          38                            19
  CLUS_3                          28                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P14.3) MUTATED       53     22     28
  DEL PEAK  8(5P14.3) WILD-TYPE     17     16     14
D24V8, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          53                            17
  CLUS_2                          22                            16
  CLUS_3                          28                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P14.3) MUTATED       52     21     30
  DEL PEAK  8(5P14.3) WILD-TYPE     17     15     15
D24V9, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          52                            17
  CLUS_2                          21                            15
  CLUS_3                          30                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5P14.3) MUTATED       25     28     10     17     11     12
  DEL PEAK  8(5P14.3) WILD-TYPE      9      8      9     10      8      3
D24V10, multiclass
        clus
vv       DEL PEAK  8(5P14.3) MUTATED DEL PEAK  8(5P14.3) WILD-TYPE
  CLUS_1                          25                             9
  CLUS_2                          28                             8
  CLUS_3                          10                             9
  CLUS_4                          17                            10
  CLUS_5                          11                             8
  CLUS_6                          12                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  9(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       31     32     36      6
  DEL PEAK  9(5Q12.1) WILD-TYPE     17      2     18      8
D25V1, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          31                            17
  CLUS_2                          32                             2
  CLUS_3                          36                            18
  CLUS_4                           6                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       34     17     18     36
  DEL PEAK  9(5Q12.1) WILD-TYPE     11      3     16     15
D25V2, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          34                            11
  CLUS_2                          17                             3
  CLUS_3                          18                            16
  CLUS_4                          36                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5Q12.1) MUTATED       33      7      4     28      7
  DEL PEAK  9(5Q12.1) WILD-TYPE     12      1      6      9     11
D25V3, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          33                            12
  CLUS_2                           7                             1
  CLUS_3                           4                             6
  CLUS_4                          28                             9
  CLUS_5                           7                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       38     15     26
  DEL PEAK  9(5Q12.1) WILD-TYPE     13     10     16
D25V4, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          38                            13
  CLUS_2                          15                            10
  CLUS_3                          26                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q12.1) MUTATED       24     28     18     16      4     14
  DEL PEAK  9(5Q12.1) WILD-TYPE     10      2     15      6      4      8
                               vv
clus                            CLUS_7
  DEL PEAK  9(5Q12.1) MUTATED        1
  DEL PEAK  9(5Q12.1) WILD-TYPE      0
D25V5, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          24                            10
  CLUS_2                          28                             2
  CLUS_3                          18                            15
  CLUS_4                          16                             6
  CLUS_5                           4                             4
  CLUS_6                          14                             8
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q12.1) MUTATED       30     26      9     15      4     12
  DEL PEAK  9(5Q12.1) WILD-TYPE     13      1      3      9      4     11
                               vv
clus                            CLUS_7
  DEL PEAK  9(5Q12.1) MUTATED        9
  DEL PEAK  9(5Q12.1) WILD-TYPE      4
D25V6, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          30                            13
  CLUS_2                          26                             1
  CLUS_3                           9                             3
  CLUS_4                          15                             9
  CLUS_5                           4                             4
  CLUS_6                          12                            11
  CLUS_7                           9                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       39     38     28
  DEL PEAK  9(5Q12.1) WILD-TYPE     12     19     14
D25V7, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          39                            12
  CLUS_2                          38                            19
  CLUS_3                          28                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       56     21     28
  DEL PEAK  9(5Q12.1) WILD-TYPE     14     17     14
D25V8, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          56                            14
  CLUS_2                          21                            17
  CLUS_3                          28                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       55     20     30
  DEL PEAK  9(5Q12.1) WILD-TYPE     14     16     15
D25V9, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          55                            14
  CLUS_2                          20                            16
  CLUS_3                          30                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q12.1) MUTATED       25     31     10     17     10     12
  DEL PEAK  9(5Q12.1) WILD-TYPE      9      5      9     10      9      3
D25V10, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          25                             9
  CLUS_2                          31                             5
  CLUS_3                          10                             9
  CLUS_4                          17                            10
  CLUS_5                          10                             9
  CLUS_6                          12                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 10(6P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P22.3) MUTATED        2      3     18      1
  DEL PEAK 10(6P22.3) WILD-TYPE     46     31     36     13
D26V1, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           2                            46
  CLUS_2                           3                            31
  CLUS_3                          18                            36
  CLUS_4                           1                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P22.3) MUTATED        1      2     10     11
  DEL PEAK 10(6P22.3) WILD-TYPE     44     18     24     40
D26V2, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           1                            44
  CLUS_2                           2                            18
  CLUS_3                          10                            24
  CLUS_4                          11                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6P22.3) MUTATED        2      0      0     11      8
  DEL PEAK 10(6P22.3) WILD-TYPE     43      8     10     26     10
D26V3, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           2                            43
  CLUS_2                           0                             8
  CLUS_3                           0                            10
  CLUS_4                          11                            26
  CLUS_5                           8                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P22.3) MUTATED        2      6     13
  DEL PEAK 10(6P22.3) WILD-TYPE     49     19     29
D26V4, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           2                            49
  CLUS_2                           6                            19
  CLUS_3                          13                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P22.3) MUTATED        2      2      8      4      0      8
  DEL PEAK 10(6P22.3) WILD-TYPE     32     28     25     18      8     14
                               vv
clus                            CLUS_7
  DEL PEAK 10(6P22.3) MUTATED        0
  DEL PEAK 10(6P22.3) WILD-TYPE      1
D26V5, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                           2                            28
  CLUS_3                           8                            25
  CLUS_4                           4                            18
  CLUS_5                           0                             8
  CLUS_6                           8                            14
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P22.3) MUTATED        2      2      3      4      1      7
  DEL PEAK 10(6P22.3) WILD-TYPE     41     25      9     20      7     16
                               vv
clus                            CLUS_7
  DEL PEAK 10(6P22.3) MUTATED        5
  DEL PEAK 10(6P22.3) WILD-TYPE      8
D26V6, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           2                            41
  CLUS_2                           2                            25
  CLUS_3                           3                             9
  CLUS_4                           4                            20
  CLUS_5                           1                             7
  CLUS_6                           7                            16
  CLUS_7                           5                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P22.3) MUTATED        2     11     11
  DEL PEAK 10(6P22.3) WILD-TYPE     49     46     31
D26V7, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           2                            49
  CLUS_2                          11                            46
  CLUS_3                          11                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P22.3) MUTATED        4      9     11
  DEL PEAK 10(6P22.3) WILD-TYPE     66     29     31
D26V8, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           4                            66
  CLUS_2                           9                            29
  CLUS_3                          11                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P22.3) MUTATED        4     10     10
  DEL PEAK 10(6P22.3) WILD-TYPE     65     26     35
D26V9, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           4                            65
  CLUS_2                          10                            26
  CLUS_3                          10                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P22.3) MUTATED        1      3      7      8      3      2
  DEL PEAK 10(6P22.3) WILD-TYPE     33     33     12     19     16     13
D26V10, multiclass
        clus
vv       DEL PEAK 10(6P22.3) MUTATED DEL PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           1                            33
  CLUS_2                           3                            33
  CLUS_3                           7                            12
  CLUS_4                           8                            19
  CLUS_5                           3                            16
  CLUS_6                           2                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 11(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q26) MUTATED        6      3     15      2
  DEL PEAK 11(6Q26) WILD-TYPE     42     31     39     12
D27V1, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         6                          42
  CLUS_2                         3                          31
  CLUS_3                        15                          39
  CLUS_4                         2                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q26) MUTATED        4      1     10     11
  DEL PEAK 11(6Q26) WILD-TYPE     41     19     24     40
D27V2, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         4                          41
  CLUS_2                         1                          19
  CLUS_3                        10                          24
  CLUS_4                        11                          40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q26) MUTATED        4      0      2     10      7
  DEL PEAK 11(6Q26) WILD-TYPE     41      8      8     27     11
D27V3, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         4                          41
  CLUS_2                         0                           8
  CLUS_3                         2                           8
  CLUS_4                        10                          27
  CLUS_5                         7                          11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        4      7     12
  DEL PEAK 11(6Q26) WILD-TYPE     47     18     30
D27V4, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         4                          47
  CLUS_2                         7                          18
  CLUS_3                        12                          30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(6Q26) MUTATED        1      4      9      2      0     10      0
  DEL PEAK 11(6Q26) WILD-TYPE     33     26     24     20      8     12      1
D27V5, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         1                          33
  CLUS_2                         4                          26
  CLUS_3                         9                          24
  CLUS_4                         2                          20
  CLUS_5                         0                           8
  CLUS_6                        10                          12
  CLUS_7                         0                           1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(6Q26) MUTATED        1      4      3      3      3      6      6
  DEL PEAK 11(6Q26) WILD-TYPE     42     23      9     21      5     17      7
D27V6, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         1                          42
  CLUS_2                         4                          23
  CLUS_3                         3                           9
  CLUS_4                         3                          21
  CLUS_5                         3                           5
  CLUS_6                         6                          17
  CLUS_7                         6                           7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        3     13     10
  DEL PEAK 11(6Q26) WILD-TYPE     48     44     32
D27V7, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         3                          48
  CLUS_2                        13                          44
  CLUS_3                        10                          32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        5     11     10
  DEL PEAK 11(6Q26) WILD-TYPE     65     27     32
D27V8, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         5                          65
  CLUS_2                        11                          27
  CLUS_3                        10                          32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        5     11     10
  DEL PEAK 11(6Q26) WILD-TYPE     64     25     35
D27V9, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         5                          64
  CLUS_2                        11                          25
  CLUS_3                        10                          35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q26) MUTATED        1      4      5      7      6      3
  DEL PEAK 11(6Q26) WILD-TYPE     33     32     14     20     13     12
D27V10, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         1                          33
  CLUS_2                         4                          32
  CLUS_3                         5                          14
  CLUS_4                         7                          20
  CLUS_5                         6                          13
  CLUS_6                         3                          12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 12(7Q11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(7Q11.22) MUTATED        0      0      4      0
  DEL PEAK 12(7Q11.22) WILD-TYPE     48     34     50     14
D28V1, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             48
  CLUS_2                            0                             34
  CLUS_3                            4                             50
  CLUS_4                            0                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(7Q11.22) MUTATED        0      0      0      4
  DEL PEAK 12(7Q11.22) WILD-TYPE     45     20     34     47
D28V2, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             45
  CLUS_2                            0                             20
  CLUS_3                            0                             34
  CLUS_4                            4                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(7Q11.22) MUTATED        0      0      0      4      0
  DEL PEAK 12(7Q11.22) WILD-TYPE     45      8     10     33     18
D28V3, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             45
  CLUS_2                            0                              8
  CLUS_3                            0                             10
  CLUS_4                            4                             33
  CLUS_5                            0                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q11.22) MUTATED        0      0      4
  DEL PEAK 12(7Q11.22) WILD-TYPE     51     25     38
D28V4, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             51
  CLUS_2                            0                             25
  CLUS_3                            4                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7Q11.22) MUTATED        0      0      0      2      0      2
  DEL PEAK 12(7Q11.22) WILD-TYPE     34     30     33     20      8     20
                                vv
clus                             CLUS_7
  DEL PEAK 12(7Q11.22) MUTATED        0
  DEL PEAK 12(7Q11.22) WILD-TYPE      1
D28V5, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             34
  CLUS_2                            0                             30
  CLUS_3                            0                             33
  CLUS_4                            2                             20
  CLUS_5                            0                              8
  CLUS_6                            2                             20
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7Q11.22) MUTATED        0      0      1      1      0      0
  DEL PEAK 12(7Q11.22) WILD-TYPE     43     27     11     23      8     23
                                vv
clus                             CLUS_7
  DEL PEAK 12(7Q11.22) MUTATED        2
  DEL PEAK 12(7Q11.22) WILD-TYPE     11
D28V6, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             43
  CLUS_2                            0                             27
  CLUS_3                            1                             11
  CLUS_4                            1                             23
  CLUS_5                            0                              8
  CLUS_6                            0                             23
  CLUS_7                            2                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q11.22) MUTATED        0      0      4
  DEL PEAK 12(7Q11.22) WILD-TYPE     51     57     38
D28V7, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             51
  CLUS_2                            0                             57
  CLUS_3                            4                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q11.22) MUTATED        0      0      4
  DEL PEAK 12(7Q11.22) WILD-TYPE     70     38     38
D28V8, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             70
  CLUS_2                            0                             38
  CLUS_3                            4                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q11.22) MUTATED        0      0      4
  DEL PEAK 12(7Q11.22) WILD-TYPE     69     36     41
D28V9, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             69
  CLUS_2                            0                             36
  CLUS_3                            4                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7Q11.22) MUTATED        0      0      0      2      0      2
  DEL PEAK 12(7Q11.22) WILD-TYPE     34     36     19     25     19     13
D28V10, multiclass
        clus
vv       DEL PEAK 12(7Q11.22) MUTATED DEL PEAK 12(7Q11.22) WILD-TYPE
  CLUS_1                            0                             34
  CLUS_2                            0                             36
  CLUS_3                            0                             19
  CLUS_4                            2                             25
  CLUS_5                            0                             19
  CLUS_6                            2                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 13(7Q35) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q35) MUTATED        0      6      6      1
  DEL PEAK 13(7Q35) WILD-TYPE     48     28     48     13
D29V1, multiclass
        clus
vv       DEL PEAK 13(7Q35) MUTATED DEL PEAK 13(7Q35) WILD-TYPE
  CLUS_1                         0                          48
  CLUS_2                         6                          28
  CLUS_3                         6                          48
  CLUS_4                         1                          13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q35) MUTATED        2      2      2      7
  DEL PEAK 13(7Q35) WILD-TYPE     43     18     32     44
D29V2, multiclass
        clus
vv       DEL PEAK 13(7Q35) MUTATED DEL PEAK 13(7Q35) WILD-TYPE
  CLUS_1                         2                          43
  CLUS_2                         2                          18
  CLUS_3                         2                          32
  CLUS_4                         7                          44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q35) MUTATED        4      0      0      6      1
  DEL PEAK 13(7Q35) WILD-TYPE     41      8     10     31     17
D29V3, multiclass
        clus
vv       DEL PEAK 13(7Q35) MUTATED DEL PEAK 13(7Q35) WILD-TYPE
  CLUS_1                         4                          41
  CLUS_2                         0                           8
  CLUS_3                         0                          10
  CLUS_4                         6                          31
  CLUS_5                         1                          17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q35) MUTATED        4      0      7
  DEL PEAK 13(7Q35) WILD-TYPE     47     25     35
D29V4, multiclass
        clus
vv       DEL PEAK 13(7Q35) MUTATED DEL PEAK 13(7Q35) WILD-TYPE
  CLUS_1                         4                          47
  CLUS_2                         0                          25
  CLUS_3                         7                          35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(7Q35) MUTATED        0      5      2      3      0      3      0
  DEL PEAK 13(7Q35) WILD-TYPE     34     25     31     19      8     19      1
D29V5, multiclass
        clus
vv       DEL PEAK 13(7Q35) MUTATED DEL PEAK 13(7Q35) WILD-TYPE
  CLUS_1                         0                          34
  CLUS_2                         5                          25
  CLUS_3                         2                          31
  CLUS_4                         3                          19
  CLUS_5                         0                           8
  CLUS_6                         3                          19
  CLUS_7                         0                           1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(7Q35) MUTATED        0      5      3      1      0      2      2
  DEL PEAK 13(7Q35) WILD-TYPE     43     22      9     23      8     21     11
D29V6, multiclass
        clus
vv       DEL PEAK 13(7Q35) MUTATED DEL PEAK 13(7Q35) WILD-TYPE
  CLUS_1                         0                          43
  CLUS_2                         5                          22
  CLUS_3                         3                           9
  CLUS_4                         1                          23
  CLUS_5                         0                           8
  CLUS_6                         2                          21
  CLUS_7                         2                          11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q35) MUTATED        2      7      4
  DEL PEAK 13(7Q35) WILD-TYPE     49     50     38
D29V7, multiclass
        clus
vv       DEL PEAK 13(7Q35) MUTATED DEL PEAK 13(7Q35) WILD-TYPE
  CLUS_1                         2                          49
  CLUS_2                         7                          50
  CLUS_3                         4                          38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q35) MUTATED        5      4      4
  DEL PEAK 13(7Q35) WILD-TYPE     65     34     38
D29V8, multiclass
        clus
vv       DEL PEAK 13(7Q35) MUTATED DEL PEAK 13(7Q35) WILD-TYPE
  CLUS_1                         5                          65
  CLUS_2                         4                          34
  CLUS_3                         4                          38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q35) MUTATED        5      2      6
  DEL PEAK 13(7Q35) WILD-TYPE     64     34     39
D29V9, multiclass
        clus
vv       DEL PEAK 13(7Q35) MUTATED DEL PEAK 13(7Q35) WILD-TYPE
  CLUS_1                         5                          64
  CLUS_2                         2                          34
  CLUS_3                         6                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q35) MUTATED        0      5      3      2      0      3
  DEL PEAK 13(7Q35) WILD-TYPE     34     31     16     25     19     12
D29V10, multiclass
        clus
vv       DEL PEAK 13(7Q35) MUTATED DEL PEAK 13(7Q35) WILD-TYPE
  CLUS_1                         0                          34
  CLUS_2                         5                          31
  CLUS_3                         3                          16
  CLUS_4                         2                          25
  CLUS_5                         0                          19
  CLUS_6                         3                          12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK 14(9P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P24.3) MUTATED       16     19     31      4
  DEL PEAK 14(9P24.3) WILD-TYPE     32     15     23     10
D30V1, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          16                            32
  CLUS_2                          19                            15
  CLUS_3                          31                            23
  CLUS_4                           4                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P24.3) MUTATED       17     12     18     23
  DEL PEAK 14(9P24.3) WILD-TYPE     28      8     16     28
D30V2, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          17                            28
  CLUS_2                          12                             8
  CLUS_3                          18                            16
  CLUS_4                          23                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(9P24.3) MUTATED       18      4      4     20     10
  DEL PEAK 14(9P24.3) WILD-TYPE     27      4      6     17      8
D30V3, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          18                            27
  CLUS_2                           4                             4
  CLUS_3                           4                             6
  CLUS_4                          20                            17
  CLUS_5                          10                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P24.3) MUTATED       21     12     23
  DEL PEAK 14(9P24.3) WILD-TYPE     30     13     19
D30V4, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          21                            30
  CLUS_2                          12                            13
  CLUS_3                          23                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9P24.3) MUTATED       15     15     16     12      1     10
  DEL PEAK 14(9P24.3) WILD-TYPE     19     15     17     10      7     12
                               vv
clus                            CLUS_7
  DEL PEAK 14(9P24.3) MUTATED        1
  DEL PEAK 14(9P24.3) WILD-TYPE      0
D30V5, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          15                            19
  CLUS_2                          15                            15
  CLUS_3                          16                            17
  CLUS_4                          12                            10
  CLUS_5                           1                             7
  CLUS_6                          10                            12
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9P24.3) MUTATED       18     14      8     11      4     10
  DEL PEAK 14(9P24.3) WILD-TYPE     25     13      4     13      4     13
                               vv
clus                            CLUS_7
  DEL PEAK 14(9P24.3) MUTATED        5
  DEL PEAK 14(9P24.3) WILD-TYPE      8
D30V6, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          18                            25
  CLUS_2                          14                            13
  CLUS_3                           8                             4
  CLUS_4                          11                            13
  CLUS_5                           4                             4
  CLUS_6                          10                            13
  CLUS_7                           5                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P24.3) MUTATED       21     31     18
  DEL PEAK 14(9P24.3) WILD-TYPE     30     26     24
D30V7, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          21                            30
  CLUS_2                          31                            26
  CLUS_3                          18                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P24.3) MUTATED       32     20     18
  DEL PEAK 14(9P24.3) WILD-TYPE     38     18     24
D30V8, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          32                            38
  CLUS_2                          20                            18
  CLUS_3                          18                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P24.3) MUTATED       32     17     21
  DEL PEAK 14(9P24.3) WILD-TYPE     37     19     24
D30V9, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          32                            37
  CLUS_2                          17                            19
  CLUS_3                          21                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9P24.3) MUTATED       13     19      9     12     10      7
  DEL PEAK 14(9P24.3) WILD-TYPE     21     17     10     15      9      8
D30V10, multiclass
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  CLUS_1                          13                            21
  CLUS_2                          19                            17
  CLUS_3                           9                            10
  CLUS_4                          12                            15
  CLUS_5                          10                             9
  CLUS_6                           7                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 15(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       15     19     31      1
  DEL PEAK 15(9P23) WILD-TYPE     33     15     23     13
D31V1, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        15                          33
  CLUS_2                        19                          15
  CLUS_3                        31                          23
  CLUS_4                         1                          13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       17     11     16     22
  DEL PEAK 15(9P23) WILD-TYPE     28      9     18     29
D31V2, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        17                          28
  CLUS_2                        11                           9
  CLUS_3                        16                          18
  CLUS_4                        22                          29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P23) MUTATED       16      4      4     20      9
  DEL PEAK 15(9P23) WILD-TYPE     29      4      6     17      9
D31V3, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        16                          29
  CLUS_2                         4                           4
  CLUS_3                         4                           6
  CLUS_4                        20                          17
  CLUS_5                         9                           9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       19     12     22
  DEL PEAK 15(9P23) WILD-TYPE     32     13     20
D31V4, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        19                          32
  CLUS_2                        12                          13
  CLUS_3                        22                          20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 15(9P23) MUTATED       13     15     14     12      1     10      1
  DEL PEAK 15(9P23) WILD-TYPE     21     15     19     10      7     12      0
D31V5, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        13                          21
  CLUS_2                        15                          15
  CLUS_3                        14                          19
  CLUS_4                        12                          10
  CLUS_5                         1                           7
  CLUS_6                        10                          12
  CLUS_7                         1                           0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 15(9P23) MUTATED       16     14      8     11      2     10      5
  DEL PEAK 15(9P23) WILD-TYPE     27     13      4     13      6     13      8
D31V6, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        16                          27
  CLUS_2                        14                          13
  CLUS_3                         8                           4
  CLUS_4                        11                          13
  CLUS_5                         2                           6
  CLUS_6                        10                          13
  CLUS_7                         5                           8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       20     28     18
  DEL PEAK 15(9P23) WILD-TYPE     31     29     24
D31V7, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        20                          31
  CLUS_2                        28                          29
  CLUS_3                        18                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       30     18     18
  DEL PEAK 15(9P23) WILD-TYPE     40     20     24
D31V8, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        30                          40
  CLUS_2                        18                          20
  CLUS_3                        18                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       30     15     21
  DEL PEAK 15(9P23) WILD-TYPE     39     21     24
D31V9, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        30                          39
  CLUS_2                        15                          21
  CLUS_3                        21                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P23) MUTATED       12     18      9     12      8      7
  DEL PEAK 15(9P23) WILD-TYPE     22     18     10     15     11      8
D31V10, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        12                          22
  CLUS_2                        18                          18
  CLUS_3                         9                          10
  CLUS_4                        12                          15
  CLUS_5                         8                          11
  CLUS_6                         7                           8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 16(9Q33.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9Q33.3) MUTATED       11     14     33      2
  DEL PEAK 16(9Q33.3) WILD-TYPE     37     20     21     12
D32V1, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          11                            37
  CLUS_2                          14                            20
  CLUS_3                          33                            21
  CLUS_4                           2                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9Q33.3) MUTATED       14      6     19     21
  DEL PEAK 16(9Q33.3) WILD-TYPE     31     14     15     30
D32V2, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          14                            31
  CLUS_2                           6                            14
  CLUS_3                          19                            15
  CLUS_4                          21                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9Q33.3) MUTATED       13      2      3     20      9
  DEL PEAK 16(9Q33.3) WILD-TYPE     32      6      7     17      9
D32V3, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          13                            32
  CLUS_2                           2                             6
  CLUS_3                           3                             7
  CLUS_4                          20                            17
  CLUS_5                           9                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q33.3) MUTATED       14     12     21
  DEL PEAK 16(9Q33.3) WILD-TYPE     37     13     21
D32V4, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          14                            37
  CLUS_2                          12                            13
  CLUS_3                          21                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9Q33.3) MUTATED       12      8     18     12      1      8
  DEL PEAK 16(9Q33.3) WILD-TYPE     22     22     15     10      7     14
                               vv
clus                            CLUS_7
  DEL PEAK 16(9Q33.3) MUTATED        1
  DEL PEAK 16(9Q33.3) WILD-TYPE      0
D32V5, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          12                            22
  CLUS_2                           8                            22
  CLUS_3                          18                            15
  CLUS_4                          12                            10
  CLUS_5                           1                             7
  CLUS_6                           8                            14
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9Q33.3) MUTATED       14      8      9     12      1     13
  DEL PEAK 16(9Q33.3) WILD-TYPE     29     19      3     12      7     10
                               vv
clus                            CLUS_7
  DEL PEAK 16(9Q33.3) MUTATED        3
  DEL PEAK 16(9Q33.3) WILD-TYPE     10
D32V6, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          14                            29
  CLUS_2                           8                            19
  CLUS_3                           9                             3
  CLUS_4                          12                            12
  CLUS_5                           1                             7
  CLUS_6                          13                            10
  CLUS_7                           3                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q33.3) MUTATED       18     25     17
  DEL PEAK 16(9Q33.3) WILD-TYPE     33     32     25
D32V7, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          18                            33
  CLUS_2                          25                            32
  CLUS_3                          17                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q33.3) MUTATED       22     21     17
  DEL PEAK 16(9Q33.3) WILD-TYPE     48     17     25
D32V8, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                          21                            17
  CLUS_3                          17                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q33.3) MUTATED       22     17     21
  DEL PEAK 16(9Q33.3) WILD-TYPE     47     19     24
D32V9, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          22                            47
  CLUS_2                          17                            19
  CLUS_3                          21                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9Q33.3) MUTATED       10     12     12     11      8      7
  DEL PEAK 16(9Q33.3) WILD-TYPE     24     24      7     16     11      8
D32V10, multiclass
        clus
vv       DEL PEAK 16(9Q33.3) MUTATED DEL PEAK 16(9Q33.3) WILD-TYPE
  CLUS_1                          10                            24
  CLUS_2                          12                            24
  CLUS_3                          12                             7
  CLUS_4                          11                            16
  CLUS_5                           8                            11
  CLUS_6                           7                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 17(9Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.2) MUTATED       11     14     32      3
  DEL PEAK 17(9Q34.2) WILD-TYPE     37     20     22     11
D33V1, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          11                            37
  CLUS_2                          14                            20
  CLUS_3                          32                            22
  CLUS_4                           3                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.2) MUTATED       14      6     20     20
  DEL PEAK 17(9Q34.2) WILD-TYPE     31     14     14     31
D33V2, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          14                            31
  CLUS_2                           6                            14
  CLUS_3                          20                            14
  CLUS_4                          20                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9Q34.2) MUTATED       13      2      3     19     10
  DEL PEAK 17(9Q34.2) WILD-TYPE     32      6      7     18      8
D33V3, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          13                            32
  CLUS_2                           2                             6
  CLUS_3                           3                             7
  CLUS_4                          19                            18
  CLUS_5                          10                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.2) MUTATED       14     12     21
  DEL PEAK 17(9Q34.2) WILD-TYPE     37     13     21
D33V4, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          14                            37
  CLUS_2                          12                            13
  CLUS_3                          21                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.2) MUTATED       12      8     19     11      1      8
  DEL PEAK 17(9Q34.2) WILD-TYPE     22     22     14     11      7     14
                               vv
clus                            CLUS_7
  DEL PEAK 17(9Q34.2) MUTATED        1
  DEL PEAK 17(9Q34.2) WILD-TYPE      0
D33V5, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          12                            22
  CLUS_2                           8                            22
  CLUS_3                          19                            14
  CLUS_4                          11                            11
  CLUS_5                           1                             7
  CLUS_6                           8                            14
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.2) MUTATED       14      8      9     12      1     14
  DEL PEAK 17(9Q34.2) WILD-TYPE     29     19      3     12      7      9
                               vv
clus                            CLUS_7
  DEL PEAK 17(9Q34.2) MUTATED        2
  DEL PEAK 17(9Q34.2) WILD-TYPE     11
D33V6, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          14                            29
  CLUS_2                           8                            19
  CLUS_3                           9                             3
  CLUS_4                          12                            12
  CLUS_5                           1                             7
  CLUS_6                          14                             9
  CLUS_7                           2                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.2) MUTATED       18     26     16
  DEL PEAK 17(9Q34.2) WILD-TYPE     33     31     26
D33V7, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          18                            33
  CLUS_2                          26                            31
  CLUS_3                          16                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.2) MUTATED       22     22     16
  DEL PEAK 17(9Q34.2) WILD-TYPE     48     16     26
D33V8, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          22                            48
  CLUS_2                          22                            16
  CLUS_3                          16                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.2) MUTATED       22     18     20
  DEL PEAK 17(9Q34.2) WILD-TYPE     47     18     25
D33V9, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          22                            47
  CLUS_2                          18                            18
  CLUS_3                          20                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.2) MUTATED       10     12     13     11      8      6
  DEL PEAK 17(9Q34.2) WILD-TYPE     24     24      6     16     11      9
D33V10, multiclass
        clus
vv       DEL PEAK 17(9Q34.2) MUTATED DEL PEAK 17(9Q34.2) WILD-TYPE
  CLUS_1                          10                            24
  CLUS_2                          12                            24
  CLUS_3                          13                             6
  CLUS_4                          11                            16
  CLUS_5                           8                            11
  CLUS_6                           6                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 18(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       20     13     42      9
  DEL PEAK 18(10P15.3) WILD-TYPE     28     21     12      5
D34V1, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           20                             28
  CLUS_2                           13                             21
  CLUS_3                           42                             12
  CLUS_4                            9                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       19     10     26     29
  DEL PEAK 18(10P15.3) WILD-TYPE     26     10      8     22
D34V2, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           19                             26
  CLUS_2                           10                             10
  CLUS_3                           26                              8
  CLUS_4                           29                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10P15.3) MUTATED       17      3      5     25     15
  DEL PEAK 18(10P15.3) WILD-TYPE     28      5      5     12      3
D34V3, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           17                             28
  CLUS_2                            3                              5
  CLUS_3                            5                              5
  CLUS_4                           25                             12
  CLUS_5                           15                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       19     16     30
  DEL PEAK 18(10P15.3) WILD-TYPE     32      9     12
D34V4, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           19                             32
  CLUS_2                           16                              9
  CLUS_3                           30                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED       13     13     26     12      4     16
  DEL PEAK 18(10P15.3) WILD-TYPE     21     17      7     10      4      6
                                vv
clus                             CLUS_7
  DEL PEAK 18(10P15.3) MUTATED        0
  DEL PEAK 18(10P15.3) WILD-TYPE      1
D34V5, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           13                             21
  CLUS_2                           13                             17
  CLUS_3                           26                              7
  CLUS_4                           12                             10
  CLUS_5                            4                              4
  CLUS_6                           16                              6
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED       16     12      8     14      5     21
  DEL PEAK 18(10P15.3) WILD-TYPE     27     15      4     10      3      2
                                vv
clus                             CLUS_7
  DEL PEAK 18(10P15.3) MUTATED        8
  DEL PEAK 18(10P15.3) WILD-TYPE      5
D34V6, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           16                             27
  CLUS_2                           12                             15
  CLUS_3                            8                              4
  CLUS_4                           14                             10
  CLUS_5                            5                              3
  CLUS_6                           21                              2
  CLUS_7                            8                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       21     36     27
  DEL PEAK 18(10P15.3) WILD-TYPE     30     21     15
D34V7, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           21                             30
  CLUS_2                           36                             21
  CLUS_3                           27                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       28     29     27
  DEL PEAK 18(10P15.3) WILD-TYPE     42      9     15
D34V8, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           28                             42
  CLUS_2                           29                              9
  CLUS_3                           27                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       28     29     27
  DEL PEAK 18(10P15.3) WILD-TYPE     41      7     18
D34V9, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           28                             41
  CLUS_2                           29                              7
  CLUS_3                           27                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED       11     17     16     15     14     11
  DEL PEAK 18(10P15.3) WILD-TYPE     23     19      3     12      5      4
D34V10, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           11                             23
  CLUS_2                           17                             19
  CLUS_3                           16                              3
  CLUS_4                           15                             12
  CLUS_5                           14                              5
  CLUS_6                           11                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 19(10Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.1) MUTATED       18      9     37      7
  DEL PEAK 19(10Q23.1) WILD-TYPE     30     25     17      7
D35V1, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           18                             30
  CLUS_2                            9                             25
  CLUS_3                           37                             17
  CLUS_4                            7                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.1) MUTATED       16      7     25     23
  DEL PEAK 19(10Q23.1) WILD-TYPE     29     13      9     28
D35V2, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           16                             29
  CLUS_2                            7                             13
  CLUS_3                           25                              9
  CLUS_4                           23                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(10Q23.1) MUTATED       15      2      4     21     13
  DEL PEAK 19(10Q23.1) WILD-TYPE     30      6      6     16      5
D35V3, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           15                             30
  CLUS_2                            2                              6
  CLUS_3                            4                              6
  CLUS_4                           21                             16
  CLUS_5                           13                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.1) MUTATED       16     14     25
  DEL PEAK 19(10Q23.1) WILD-TYPE     35     11     17
D35V4, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           16                             35
  CLUS_2                           14                             11
  CLUS_3                           25                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.1) MUTATED       12      8     25     10      4     12
  DEL PEAK 19(10Q23.1) WILD-TYPE     22     22      8     12      4     10
                                vv
clus                             CLUS_7
  DEL PEAK 19(10Q23.1) MUTATED        0
  DEL PEAK 19(10Q23.1) WILD-TYPE      1
D35V5, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           12                             22
  CLUS_2                            8                             22
  CLUS_3                           25                              8
  CLUS_4                           10                             12
  CLUS_5                            4                              4
  CLUS_6                           12                             10
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.1) MUTATED       14      8      9     12      5     19
  DEL PEAK 19(10Q23.1) WILD-TYPE     29     19      3     12      3      4
                                vv
clus                             CLUS_7
  DEL PEAK 19(10Q23.1) MUTATED        4
  DEL PEAK 19(10Q23.1) WILD-TYPE      9
D35V6, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           14                             29
  CLUS_2                            8                             19
  CLUS_3                            9                              3
  CLUS_4                           12                             12
  CLUS_5                            5                              3
  CLUS_6                           19                              4
  CLUS_7                            4                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.1) MUTATED       17     34     20
  DEL PEAK 19(10Q23.1) WILD-TYPE     34     23     22
D35V7, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           17                             34
  CLUS_2                           34                             23
  CLUS_3                           20                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.1) MUTATED       22     29     20
  DEL PEAK 19(10Q23.1) WILD-TYPE     48      9     22
D35V8, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           22                             48
  CLUS_2                           29                              9
  CLUS_3                           20                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.1) MUTATED       22     27     22
  DEL PEAK 19(10Q23.1) WILD-TYPE     47      9     23
D35V9, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                           22                             47
  CLUS_2                           27                              9
  CLUS_3                           22                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.1) MUTATED        9     13     15      9     14     11
  DEL PEAK 19(10Q23.1) WILD-TYPE     25     23      4     18      5      4
D35V10, multiclass
        clus
vv       DEL PEAK 19(10Q23.1) MUTATED DEL PEAK 19(10Q23.1) WILD-TYPE
  CLUS_1                            9                             25
  CLUS_2                           13                             23
  CLUS_3                           15                              4
  CLUS_4                            9                             18
  CLUS_5                           14                              5
  CLUS_6                           11                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 20(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q26.3) MUTATED       17      9     41      9
  DEL PEAK 20(10Q26.3) WILD-TYPE     31     25     13      5
D36V1, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           17                             31
  CLUS_2                            9                             25
  CLUS_3                           41                             13
  CLUS_4                            9                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q26.3) MUTATED       17      7     27     25
  DEL PEAK 20(10Q26.3) WILD-TYPE     28     13      7     26
D36V2, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           17                             28
  CLUS_2                            7                             13
  CLUS_3                           27                              7
  CLUS_4                           25                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q26.3) MUTATED       15      2      5     23     13
  DEL PEAK 20(10Q26.3) WILD-TYPE     30      6      5     14      5
D36V3, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           15                             30
  CLUS_2                            2                              6
  CLUS_3                            5                              5
  CLUS_4                           23                             14
  CLUS_5                           13                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       16     15     27
  DEL PEAK 20(10Q26.3) WILD-TYPE     35     10     15
D36V4, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           16                             35
  CLUS_2                           15                             10
  CLUS_3                           27                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q26.3) MUTATED       14      8     27     11      4     12
  DEL PEAK 20(10Q26.3) WILD-TYPE     20     22      6     11      4     10
                                vv
clus                             CLUS_7
  DEL PEAK 20(10Q26.3) MUTATED        0
  DEL PEAK 20(10Q26.3) WILD-TYPE      1
D36V5, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           14                             20
  CLUS_2                            8                             22
  CLUS_3                           27                              6
  CLUS_4                           11                             11
  CLUS_5                            4                              4
  CLUS_6                           12                             10
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q26.3) MUTATED       16      8     10     13      6     19
  DEL PEAK 20(10Q26.3) WILD-TYPE     27     19      2     11      2      4
                                vv
clus                             CLUS_7
  DEL PEAK 20(10Q26.3) MUTATED        4
  DEL PEAK 20(10Q26.3) WILD-TYPE      9
D36V6, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           16                             27
  CLUS_2                            8                             19
  CLUS_3                           10                              2
  CLUS_4                           13                             11
  CLUS_5                            6                              2
  CLUS_6                           19                              4
  CLUS_7                            4                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       19     35     22
  DEL PEAK 20(10Q26.3) WILD-TYPE     32     22     20
D36V7, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           19                             32
  CLUS_2                           35                             22
  CLUS_3                           22                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       24     30     22
  DEL PEAK 20(10Q26.3) WILD-TYPE     46      8     20
D36V8, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           24                             46
  CLUS_2                           30                              8
  CLUS_3                           22                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       24     29     23
  DEL PEAK 20(10Q26.3) WILD-TYPE     45      7     22
D36V9, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           24                             45
  CLUS_2                           29                              7
  CLUS_3                           23                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q26.3) MUTATED       10     14     17     10     14     11
  DEL PEAK 20(10Q26.3) WILD-TYPE     24     22      2     17      5      4
D36V10, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           10                             24
  CLUS_2                           14                             22
  CLUS_3                           17                              2
  CLUS_4                           10                             17
  CLUS_5                           14                              5
  CLUS_6                           11                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 21(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       24     24     37      9
  DEL PEAK 21(11P15.5) WILD-TYPE     24     10     17      5
D37V1, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           24                             24
  CLUS_2                           24                             10
  CLUS_3                           37                             17
  CLUS_4                            9                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       32     16     21     25
  DEL PEAK 21(11P15.5) WILD-TYPE     13      4     13     26
D37V2, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           32                             13
  CLUS_2                           16                              4
  CLUS_3                           21                             13
  CLUS_4                           25                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11P15.5) MUTATED       29      7      3     21     11
  DEL PEAK 21(11P15.5) WILD-TYPE     16      1      7     16      7
D37V3, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           29                             16
  CLUS_2                            7                              1
  CLUS_3                            3                              7
  CLUS_4                           21                             16
  CLUS_5                           11                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       34     13     24
  DEL PEAK 21(11P15.5) WILD-TYPE     17     12     18
D37V4, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           34                             17
  CLUS_2                           13                             12
  CLUS_3                           24                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       26     21     22     11      4      9
  DEL PEAK 21(11P15.5) WILD-TYPE      8      9     11     11      4     13
                                vv
clus                             CLUS_7
  DEL PEAK 21(11P15.5) MUTATED        1
  DEL PEAK 21(11P15.5) WILD-TYPE      0
D37V5, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           26                              8
  CLUS_2                           21                              9
  CLUS_3                           22                             11
  CLUS_4                           11                             11
  CLUS_5                            4                              4
  CLUS_6                            9                             13
  CLUS_7                            1                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       31     20      8     12      4     17
  DEL PEAK 21(11P15.5) WILD-TYPE     12      7      4     12      4      6
                                vv
clus                             CLUS_7
  DEL PEAK 21(11P15.5) MUTATED        2
  DEL PEAK 21(11P15.5) WILD-TYPE     11
D37V6, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           31                             12
  CLUS_2                           20                              7
  CLUS_3                            8                              4
  CLUS_4                           12                             12
  CLUS_5                            4                              4
  CLUS_6                           17                              6
  CLUS_7                            2                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       35     42     17
  DEL PEAK 21(11P15.5) WILD-TYPE     16     15     25
D37V7, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           35                             16
  CLUS_2                           42                             15
  CLUS_3                           17                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       51     26     17
  DEL PEAK 21(11P15.5) WILD-TYPE     19     12     25
D37V8, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           51                             19
  CLUS_2                           26                             12
  CLUS_3                           17                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       51     23     20
  DEL PEAK 21(11P15.5) WILD-TYPE     18     13     25
D37V9, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           51                             18
  CLUS_2                           23                             13
  CLUS_3                           20                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       24     27     15     10     11      7
  DEL PEAK 21(11P15.5) WILD-TYPE     10      9      4     17      8      8
D37V10, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           24                             10
  CLUS_2                           27                              9
  CLUS_3                           15                              4
  CLUS_4                           10                             17
  CLUS_5                           11                              8
  CLUS_6                            7                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 22(11P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11P12) MUTATED       27     24     38     10
  DEL PEAK 22(11P12) WILD-TYPE     21     10     16      4
D38V1, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         27                           21
  CLUS_2                         24                           10
  CLUS_3                         38                           16
  CLUS_4                         10                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11P12) MUTATED       33     16     24     26
  DEL PEAK 22(11P12) WILD-TYPE     12      4     10     25
D38V2, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         33                           12
  CLUS_2                         16                            4
  CLUS_3                         24                           10
  CLUS_4                         26                           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11P12) MUTATED       30      7      3     22     12
  DEL PEAK 22(11P12) WILD-TYPE     15      1      7     15      6
D38V3, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         30                           15
  CLUS_2                          7                            1
  CLUS_3                          3                            7
  CLUS_4                         22                           15
  CLUS_5                         12                            6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P12) MUTATED       35     14     25
  DEL PEAK 22(11P12) WILD-TYPE     16     11     17
D38V4, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         35                           16
  CLUS_2                         14                           11
  CLUS_3                         25                           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 22(11P12) MUTATED       25     22     25     11      5     10      1
  DEL PEAK 22(11P12) WILD-TYPE      9      8      8     11      3     12      0
D38V5, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         25                            9
  CLUS_2                         22                            8
  CLUS_3                         25                            8
  CLUS_4                         11                           11
  CLUS_5                          5                            3
  CLUS_6                         10                           12
  CLUS_7                          1                            0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 22(11P12) MUTATED       31     21      8     12      5     19      3
  DEL PEAK 22(11P12) WILD-TYPE     12      6      4     12      3      4     10
D38V6, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         31                           12
  CLUS_2                         21                            6
  CLUS_3                          8                            4
  CLUS_4                         12                           12
  CLUS_5                          5                            3
  CLUS_6                         19                            4
  CLUS_7                          3                           10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P12) MUTATED       36     45     18
  DEL PEAK 22(11P12) WILD-TYPE     15     12     24
D38V7, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         36                           15
  CLUS_2                         45                           12
  CLUS_3                         18                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P12) MUTATED       52     29     18
  DEL PEAK 22(11P12) WILD-TYPE     18      9     24
D38V8, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         52                           18
  CLUS_2                         29                            9
  CLUS_3                         18                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P12) MUTATED       51     27     21
  DEL PEAK 22(11P12) WILD-TYPE     18      9     24
D38V9, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         51                           18
  CLUS_2                         27                            9
  CLUS_3                         21                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P12) MUTATED       25     27     15     10     14      8
  DEL PEAK 22(11P12) WILD-TYPE      9      9      4     17      5      7
D38V10, multiclass
        clus
vv       DEL PEAK 22(11P12) MUTATED DEL PEAK 22(11P12) WILD-TYPE
  CLUS_1                         25                            9
  CLUS_2                         27                            9
  CLUS_3                         15                            4
  CLUS_4                         10                           17
  CLUS_5                         14                            5
  CLUS_6                          8                            7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 23(11Q12.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q12.3) MUTATED       29     31     40     14
  DEL PEAK 23(11Q12.3) WILD-TYPE     19      3     14      0
D39V1, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           29                             19
  CLUS_2                           31                              3
  CLUS_3                           40                             14
  CLUS_4                           14                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q12.3) MUTATED       36     18     26     34
  DEL PEAK 23(11Q12.3) WILD-TYPE      9      2      8     17
D39V2, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           36                              9
  CLUS_2                           18                              2
  CLUS_3                           26                              8
  CLUS_4                           34                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q12.3) MUTATED       39      7      5     23     13
  DEL PEAK 23(11Q12.3) WILD-TYPE      6      1      5     14      5
D39V3, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           39                              6
  CLUS_2                            7                              1
  CLUS_3                            5                              5
  CLUS_4                           23                             14
  CLUS_5                           13                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q12.3) MUTATED       44     16     27
  DEL PEAK 23(11Q12.3) WILD-TYPE      7      9     15
D39V4, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           44                              7
  CLUS_2                           16                              9
  CLUS_3                           27                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q12.3) MUTATED       27     30     26     13      7     11
  DEL PEAK 23(11Q12.3) WILD-TYPE      7      0      7      9      1     11
                                vv
clus                             CLUS_7
  DEL PEAK 23(11Q12.3) MUTATED        0
  DEL PEAK 23(11Q12.3) WILD-TYPE      1
D39V5, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           27                              7
  CLUS_2                           30                              0
  CLUS_3                           26                              7
  CLUS_4                           13                              9
  CLUS_5                            7                              1
  CLUS_6                           11                             11
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q12.3) MUTATED       35     27      9     14      6     20
  DEL PEAK 23(11Q12.3) WILD-TYPE      8      0      3     10      2      3
                                vv
clus                             CLUS_7
  DEL PEAK 23(11Q12.3) MUTATED        3
  DEL PEAK 23(11Q12.3) WILD-TYPE     10
D39V6, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           35                              8
  CLUS_2                           27                              0
  CLUS_3                            9                              3
  CLUS_4                           14                             10
  CLUS_5                            6                              2
  CLUS_6                           20                              3
  CLUS_7                            3                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q12.3) MUTATED       43     51     20
  DEL PEAK 23(11Q12.3) WILD-TYPE      8      6     22
D39V7, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           43                              8
  CLUS_2                           51                              6
  CLUS_3                           20                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q12.3) MUTATED       62     32     20
  DEL PEAK 23(11Q12.3) WILD-TYPE      8      6     22
D39V8, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           62                              8
  CLUS_2                           32                              6
  CLUS_3                           20                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q12.3) MUTATED       61     30     23
  DEL PEAK 23(11Q12.3) WILD-TYPE      8      6     22
D39V9, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           61                              8
  CLUS_2                           30                              6
  CLUS_3                           23                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q12.3) MUTATED       27     35     15     12     16      9
  DEL PEAK 23(11Q12.3) WILD-TYPE      7      1      4     15      3      6
D39V10, multiclass
        clus
vv       DEL PEAK 23(11Q12.3) MUTATED DEL PEAK 23(11Q12.3) WILD-TYPE
  CLUS_1                           27                              7
  CLUS_2                           35                              1
  CLUS_3                           15                              4
  CLUS_4                           12                             15
  CLUS_5                           16                              3
  CLUS_6                            9                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 24(11Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11Q24.3) MUTATED       32     33     43     14
  DEL PEAK 24(11Q24.3) WILD-TYPE     16      1     11      0
D40V1, multiclass
        clus
vv       DEL PEAK 24(11Q24.3) MUTATED DEL PEAK 24(11Q24.3) WILD-TYPE
  CLUS_1                           32                             16
  CLUS_2                           33                              1
  CLUS_3                           43                             11
  CLUS_4                           14                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11Q24.3) MUTATED       38     18     27     39
  DEL PEAK 24(11Q24.3) WILD-TYPE      7      2      7     12
D40V2, multiclass
        clus
vv       DEL PEAK 24(11Q24.3) MUTATED DEL PEAK 24(11Q24.3) WILD-TYPE
  CLUS_1                           38                              7
  CLUS_2                           18                              2
  CLUS_3                           27                              7
  CLUS_4                           39                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11Q24.3) MUTATED       39      7      7     28     14
  DEL PEAK 24(11Q24.3) WILD-TYPE      6      1      3      9      4
D40V3, multiclass
        clus
vv       DEL PEAK 24(11Q24.3) MUTATED DEL PEAK 24(11Q24.3) WILD-TYPE
  CLUS_1                           39                              6
  CLUS_2                            7                              1
  CLUS_3                            7                              3
  CLUS_4                           28                              9
  CLUS_5                           14                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q24.3) MUTATED       44     18     33
  DEL PEAK 24(11Q24.3) WILD-TYPE      7      7      9
D40V4, multiclass
        clus
vv       DEL PEAK 24(11Q24.3) MUTATED DEL PEAK 24(11Q24.3) WILD-TYPE
  CLUS_1                           44                              7
  CLUS_2                           18                              7
  CLUS_3                           33                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q24.3) MUTATED       28     30     28     16      6     14
  DEL PEAK 24(11Q24.3) WILD-TYPE      6      0      5      6      2      8
                                vv
clus                             CLUS_7
  DEL PEAK 24(11Q24.3) MUTATED        0
  DEL PEAK 24(11Q24.3) WILD-TYPE      1
D40V5, multiclass
        clus
vv       DEL PEAK 24(11Q24.3) MUTATED DEL PEAK 24(11Q24.3) WILD-TYPE
  CLUS_1                           28                              6
  CLUS_2                           30                              0
  CLUS_3                           28                              5
  CLUS_4                           16                              6
  CLUS_5                            6                              2
  CLUS_6                           14                              8
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q24.3) MUTATED       35     27     10     18      7     20
  DEL PEAK 24(11Q24.3) WILD-TYPE      8      0      2      6      1      3
                                vv
clus                             CLUS_7
  DEL PEAK 24(11Q24.3) MUTATED        5
  DEL PEAK 24(11Q24.3) WILD-TYPE      8
D40V6, multiclass
        clus
vv       DEL PEAK 24(11Q24.3) MUTATED DEL PEAK 24(11Q24.3) WILD-TYPE
  CLUS_1                           35                              8
  CLUS_2                           27                              0
  CLUS_3                           10                              2
  CLUS_4                           18                              6
  CLUS_5                            7                              1
  CLUS_6                           20                              3
  CLUS_7                            5                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q24.3) MUTATED       43     52     27
  DEL PEAK 24(11Q24.3) WILD-TYPE      8      5     15
D40V7, multiclass
        clus
vv       DEL PEAK 24(11Q24.3) MUTATED DEL PEAK 24(11Q24.3) WILD-TYPE
  CLUS_1                           43                              8
  CLUS_2                           52                              5
  CLUS_3                           27                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q24.3) MUTATED       62     33     27
  DEL PEAK 24(11Q24.3) WILD-TYPE      8      5     15
D40V8, multiclass
        clus
vv       DEL PEAK 24(11Q24.3) MUTATED DEL PEAK 24(11Q24.3) WILD-TYPE
  CLUS_1                           62                              8
  CLUS_2                           33                              5
  CLUS_3                           27                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q24.3) MUTATED       61     31     30
  DEL PEAK 24(11Q24.3) WILD-TYPE      8      5     15
D40V9, multiclass
        clus
vv       DEL PEAK 24(11Q24.3) MUTATED DEL PEAK 24(11Q24.3) WILD-TYPE
  CLUS_1                           61                              8
  CLUS_2                           31                              5
  CLUS_3                           30                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q24.3) MUTATED       26     36     15     16     17     12
  DEL PEAK 24(11Q24.3) WILD-TYPE      8      0      4     11      2      3
D40V10, multiclass
        clus
vv       DEL PEAK 24(11Q24.3) MUTATED DEL PEAK 24(11Q24.3) WILD-TYPE
  CLUS_1                           26                              8
  CLUS_2                           36                              0
  CLUS_3                           15                              4
  CLUS_4                           16                             11
  CLUS_5                           17                              2
  CLUS_6                           12                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 25(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q34) MUTATED       32     32     40      9
  DEL PEAK 25(13Q34) WILD-TYPE     16      2     14      5
D41V1, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         32                           16
  CLUS_2                         32                            2
  CLUS_3                         40                           14
  CLUS_4                          9                            5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q34) MUTATED       34     18     26     35
  DEL PEAK 25(13Q34) WILD-TYPE     11      2      8     16
D41V2, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         34                           11
  CLUS_2                         18                            2
  CLUS_3                         26                            8
  CLUS_4                         35                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(13Q34) MUTATED       37      6      4     28     13
  DEL PEAK 25(13Q34) WILD-TYPE      8      2      6      9      5
D41V3, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         37                            8
  CLUS_2                          6                            2
  CLUS_3                          4                            6
  CLUS_4                         28                            9
  CLUS_5                         13                            5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       41     15     32
  DEL PEAK 25(13Q34) WILD-TYPE     10     10     10
D41V4, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         41                           10
  CLUS_2                         15                           10
  CLUS_3                         32                           10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 25(13Q34) MUTATED       23     30     26     16      4     13      1
  DEL PEAK 25(13Q34) WILD-TYPE     11      0      7      6      4      9      0
D41V5, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         23                           11
  CLUS_2                         30                            0
  CLUS_3                         26                            7
  CLUS_4                         16                            6
  CLUS_5                          4                            4
  CLUS_6                         13                            9
  CLUS_7                          1                            0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 25(13Q34) MUTATED       30     27     11     15      6     17      7
  DEL PEAK 25(13Q34) WILD-TYPE     13      0      1      9      2      6      6
D41V6, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         30                           13
  CLUS_2                         27                            0
  CLUS_3                         11                            1
  CLUS_4                         15                            9
  CLUS_5                          6                            2
  CLUS_6                         17                            6
  CLUS_7                          7                            6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       41     45     27
  DEL PEAK 25(13Q34) WILD-TYPE     10     12     15
D41V7, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         41                           10
  CLUS_2                         45                           12
  CLUS_3                         27                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       57     29     27
  DEL PEAK 25(13Q34) WILD-TYPE     13      9     15
D41V8, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         57                           13
  CLUS_2                         29                            9
  CLUS_3                         27                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       56     27     30
  DEL PEAK 25(13Q34) WILD-TYPE     13      9     15
D41V9, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         56                           13
  CLUS_2                         27                            9
  CLUS_3                         30                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(13Q34) MUTATED       22     35     14     15     15     12
  DEL PEAK 25(13Q34) WILD-TYPE     12      1      5     12      4      3
D41V10, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         22                           12
  CLUS_2                         35                            1
  CLUS_3                         14                            5
  CLUS_4                         15                           12
  CLUS_5                         15                            4
  CLUS_6                         12                            3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 26(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(16Q23.1) MUTATED       12     20     23     11
  DEL PEAK 26(16Q23.1) WILD-TYPE     36     14     31      3
D42V1, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           12                             36
  CLUS_2                           20                             14
  CLUS_3                           23                             31
  CLUS_4                           11                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(16Q23.1) MUTATED       17     14     18     17
  DEL PEAK 26(16Q23.1) WILD-TYPE     28      6     16     34
D42V2, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           17                             28
  CLUS_2                           14                              6
  CLUS_3                           18                             16
  CLUS_4                           17                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q23.1) MUTATED       19      5      3     15      9
  DEL PEAK 26(16Q23.1) WILD-TYPE     26      3      7     22      9
D42V3, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           19                             26
  CLUS_2                            5                              3
  CLUS_3                            3                              7
  CLUS_4                           15                             22
  CLUS_5                            9                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED       22      8     21
  DEL PEAK 26(16Q23.1) WILD-TYPE     29     17     21
D42V4, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           22                             29
  CLUS_2                            8                             17
  CLUS_3                           21                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(16Q23.1) MUTATED       12     18     17      9      3      7
  DEL PEAK 26(16Q23.1) WILD-TYPE     22     12     16     13      5     15
                                vv
clus                             CLUS_7
  DEL PEAK 26(16Q23.1) MUTATED        0
  DEL PEAK 26(16Q23.1) WILD-TYPE      1
D42V5, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           12                             22
  CLUS_2                           18                             12
  CLUS_3                           17                             16
  CLUS_4                            9                             13
  CLUS_5                            3                              5
  CLUS_6                            7                             15
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(16Q23.1) MUTATED       16     16      6      8      4     12
  DEL PEAK 26(16Q23.1) WILD-TYPE     27     11      6     16      4     11
                                vv
clus                             CLUS_7
  DEL PEAK 26(16Q23.1) MUTATED        4
  DEL PEAK 26(16Q23.1) WILD-TYPE      9
D42V6, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           16                             27
  CLUS_2                           16                             11
  CLUS_3                            6                              6
  CLUS_4                            8                             16
  CLUS_5                            4                              4
  CLUS_6                           12                             11
  CLUS_7                            4                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED       20     32     14
  DEL PEAK 26(16Q23.1) WILD-TYPE     31     25     28
D42V7, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           20                             31
  CLUS_2                           32                             25
  CLUS_3                           14                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED       32     20     14
  DEL PEAK 26(16Q23.1) WILD-TYPE     38     18     28
D42V8, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           32                             38
  CLUS_2                           20                             18
  CLUS_3                           14                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q23.1) MUTATED       31     18     17
  DEL PEAK 26(16Q23.1) WILD-TYPE     38     18     28
D42V9, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           31                             38
  CLUS_2                           18                             18
  CLUS_3                           17                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(16Q23.1) MUTATED       11     21      8      6     10     10
  DEL PEAK 26(16Q23.1) WILD-TYPE     23     15     11     21      9      5
D42V10, multiclass
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  CLUS_1                           11                             23
  CLUS_2                           21                             15
  CLUS_3                            8                             11
  CLUS_4                            6                             21
  CLUS_5                           10                              9
  CLUS_6                           10                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 27(16Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(16Q23.3) MUTATED       13     20     23     11
  DEL PEAK 27(16Q23.3) WILD-TYPE     35     14     31      3
D43V1, multiclass
        clus
vv       DEL PEAK 27(16Q23.3) MUTATED DEL PEAK 27(16Q23.3) WILD-TYPE
  CLUS_1                           13                             35
  CLUS_2                           20                             14
  CLUS_3                           23                             31
  CLUS_4                           11                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(16Q23.3) MUTATED       16     13     22     16
  DEL PEAK 27(16Q23.3) WILD-TYPE     29      7     12     35
D43V2, multiclass
        clus
vv       DEL PEAK 27(16Q23.3) MUTATED DEL PEAK 27(16Q23.3) WILD-TYPE
  CLUS_1                           16                             29
  CLUS_2                           13                              7
  CLUS_3                           22                             12
  CLUS_4                           16                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(16Q23.3) MUTATED       17      4      4     16     10
  DEL PEAK 27(16Q23.3) WILD-TYPE     28      4      6     21      8
D43V3, multiclass
        clus
vv       DEL PEAK 27(16Q23.3) MUTATED DEL PEAK 27(16Q23.3) WILD-TYPE
  CLUS_1                           17                             28
  CLUS_2                            4                              4
  CLUS_3                            4                              6
  CLUS_4                           16                             21
  CLUS_5                           10                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q23.3) MUTATED       19      9     23
  DEL PEAK 27(16Q23.3) WILD-TYPE     32     16     19
D43V4, multiclass
        clus
vv       DEL PEAK 27(16Q23.3) MUTATED DEL PEAK 27(16Q23.3) WILD-TYPE
  CLUS_1                           19                             32
  CLUS_2                            9                             16
  CLUS_3                           23                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(16Q23.3) MUTATED       10     17     21      9      3      7
  DEL PEAK 27(16Q23.3) WILD-TYPE     24     13     12     13      5     15
                                vv
clus                             CLUS_7
  DEL PEAK 27(16Q23.3) MUTATED        0
  DEL PEAK 27(16Q23.3) WILD-TYPE      1
D43V5, multiclass
        clus
vv       DEL PEAK 27(16Q23.3) MUTATED DEL PEAK 27(16Q23.3) WILD-TYPE
  CLUS_1                           10                             24
  CLUS_2                           17                             13
  CLUS_3                           21                             12
  CLUS_4                            9                             13
  CLUS_5                            3                              5
  CLUS_6                            7                             15
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(16Q23.3) MUTATED       14     15      7      8      4     15
  DEL PEAK 27(16Q23.3) WILD-TYPE     29     12      5     16      4      8
                                vv
clus                             CLUS_7
  DEL PEAK 27(16Q23.3) MUTATED        4
  DEL PEAK 27(16Q23.3) WILD-TYPE      9
D43V6, multiclass
        clus
vv       DEL PEAK 27(16Q23.3) MUTATED DEL PEAK 27(16Q23.3) WILD-TYPE
  CLUS_1                           14                             29
  CLUS_2                           15                             12
  CLUS_3                            7                              5
  CLUS_4                            8                             16
  CLUS_5                            4                              4
  CLUS_6                           15                              8
  CLUS_7                            4                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q23.3) MUTATED       17     36     14
  DEL PEAK 27(16Q23.3) WILD-TYPE     34     21     28
D43V7, multiclass
        clus
vv       DEL PEAK 27(16Q23.3) MUTATED DEL PEAK 27(16Q23.3) WILD-TYPE
  CLUS_1                           17                             34
  CLUS_2                           36                             21
  CLUS_3                           14                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q23.3) MUTATED       29     24     14
  DEL PEAK 27(16Q23.3) WILD-TYPE     41     14     28
D43V8, multiclass
        clus
vv       DEL PEAK 27(16Q23.3) MUTATED DEL PEAK 27(16Q23.3) WILD-TYPE
  CLUS_1                           29                             41
  CLUS_2                           24                             14
  CLUS_3                           14                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q23.3) MUTATED       28     21     18
  DEL PEAK 27(16Q23.3) WILD-TYPE     41     15     27
D43V9, multiclass
        clus
vv       DEL PEAK 27(16Q23.3) MUTATED DEL PEAK 27(16Q23.3) WILD-TYPE
  CLUS_1                           28                             41
  CLUS_2                           21                             15
  CLUS_3                           18                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(16Q23.3) MUTATED       11     18     10      6     12     10
  DEL PEAK 27(16Q23.3) WILD-TYPE     23     18      9     21      7      5
D43V10, multiclass
        clus
vv       DEL PEAK 27(16Q23.3) MUTATED DEL PEAK 27(16Q23.3) WILD-TYPE
  CLUS_1                           11                             23
  CLUS_2                           18                             18
  CLUS_3                           10                              9
  CLUS_4                            6                             21
  CLUS_5                           12                              7
  CLUS_6                           10                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 28(18P11.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18P11.32) MUTATED       34     28     44     12
  DEL PEAK 28(18P11.32) WILD-TYPE     14      6     10      2
D44V1, multiclass
        clus
vv       DEL PEAK 28(18P11.32) MUTATED DEL PEAK 28(18P11.32) WILD-TYPE
  CLUS_1                            34                              14
  CLUS_2                            28                               6
  CLUS_3                            44                              10
  CLUS_4                            12                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18P11.32) MUTATED       33     18     30     37
  DEL PEAK 28(18P11.32) WILD-TYPE     12      2      4     14
D44V2, multiclass
        clus
vv       DEL PEAK 28(18P11.32) MUTATED DEL PEAK 28(18P11.32) WILD-TYPE
  CLUS_1                            33                              12
  CLUS_2                            18                               2
  CLUS_3                            30                               4
  CLUS_4                            37                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(18P11.32) MUTATED       34      6      6     30     14
  DEL PEAK 28(18P11.32) WILD-TYPE     11      2      4      7      4
D44V3, multiclass
        clus
vv       DEL PEAK 28(18P11.32) MUTATED DEL PEAK 28(18P11.32) WILD-TYPE
  CLUS_1                            34                              11
  CLUS_2                             6                               2
  CLUS_3                             6                               4
  CLUS_4                            30                               7
  CLUS_5                            14                               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18P11.32) MUTATED       38     19     33
  DEL PEAK 28(18P11.32) WILD-TYPE     13      6      9
D44V4, multiclass
        clus
vv       DEL PEAK 28(18P11.32) MUTATED DEL PEAK 28(18P11.32) WILD-TYPE
  CLUS_1                            38                              13
  CLUS_2                            19                               6
  CLUS_3                            33                               9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(18P11.32) MUTATED       26     24     29     15      7     16
  DEL PEAK 28(18P11.32) WILD-TYPE      8      6      4      7      1      6
                                 vv
clus                              CLUS_7
  DEL PEAK 28(18P11.32) MUTATED        1
  DEL PEAK 28(18P11.32) WILD-TYPE      0
D44V5, multiclass
        clus
vv       DEL PEAK 28(18P11.32) MUTATED DEL PEAK 28(18P11.32) WILD-TYPE
  CLUS_1                            26                               8
  CLUS_2                            24                               6
  CLUS_3                            29                               4
  CLUS_4                            15                               7
  CLUS_5                             7                               1
  CLUS_6                            16                               6
  CLUS_7                             1                               0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(18P11.32) MUTATED       34     21     11     15      7     21
  DEL PEAK 28(18P11.32) WILD-TYPE      9      6      1      9      1      2
                                 vv
clus                              CLUS_7
  DEL PEAK 28(18P11.32) MUTATED        9
  DEL PEAK 28(18P11.32) WILD-TYPE      4
D44V6, multiclass
        clus
vv       DEL PEAK 28(18P11.32) MUTATED DEL PEAK 28(18P11.32) WILD-TYPE
  CLUS_1                            34                               9
  CLUS_2                            21                               6
  CLUS_3                            11                               1
  CLUS_4                            15                               9
  CLUS_5                             7                               1
  CLUS_6                            21                               2
  CLUS_7                             9                               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18P11.32) MUTATED       40     50     28
  DEL PEAK 28(18P11.32) WILD-TYPE     11      7     14
D44V7, multiclass
        clus
vv       DEL PEAK 28(18P11.32) MUTATED DEL PEAK 28(18P11.32) WILD-TYPE
  CLUS_1                            40                              11
  CLUS_2                            50                               7
  CLUS_3                            28                              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18P11.32) MUTATED       55     35     28
  DEL PEAK 28(18P11.32) WILD-TYPE     15      3     14
D44V8, multiclass
        clus
vv       DEL PEAK 28(18P11.32) MUTATED DEL PEAK 28(18P11.32) WILD-TYPE
  CLUS_1                            55                              15
  CLUS_2                            35                               3
  CLUS_3                            28                              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18P11.32) MUTATED       55     31     32
  DEL PEAK 28(18P11.32) WILD-TYPE     14      5     13
D44V9, multiclass
        clus
vv       DEL PEAK 28(18P11.32) MUTATED DEL PEAK 28(18P11.32) WILD-TYPE
  CLUS_1                            55                              14
  CLUS_2                            31                               5
  CLUS_3                            32                              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(18P11.32) MUTATED       25     30     16     16     18     13
  DEL PEAK 28(18P11.32) WILD-TYPE      9      6      3     11      1      2
D44V10, multiclass
        clus
vv       DEL PEAK 28(18P11.32) MUTATED DEL PEAK 28(18P11.32) WILD-TYPE
  CLUS_1                            25                               9
  CLUS_2                            30                               6
  CLUS_3                            16                               3
  CLUS_4                            16                              11
  CLUS_5                            18                               1
  CLUS_6                            13                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 29(18Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(18Q22.3) MUTATED       33     32     48     12
  DEL PEAK 29(18Q22.3) WILD-TYPE     15      2      6      2
D45V1, multiclass
        clus
vv       DEL PEAK 29(18Q22.3) MUTATED DEL PEAK 29(18Q22.3) WILD-TYPE
  CLUS_1                           33                             15
  CLUS_2                           32                              2
  CLUS_3                           48                              6
  CLUS_4                           12                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(18Q22.3) MUTATED       34     19     31     41
  DEL PEAK 29(18Q22.3) WILD-TYPE     11      1      3     10
D45V2, multiclass
        clus
vv       DEL PEAK 29(18Q22.3) MUTATED DEL PEAK 29(18Q22.3) WILD-TYPE
  CLUS_1                           34                             11
  CLUS_2                           19                              1
  CLUS_3                           31                              3
  CLUS_4                           41                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(18Q22.3) MUTATED       37      6      7     32     15
  DEL PEAK 29(18Q22.3) WILD-TYPE      8      2      3      5      3
D45V3, multiclass
        clus
vv       DEL PEAK 29(18Q22.3) MUTATED DEL PEAK 29(18Q22.3) WILD-TYPE
  CLUS_1                           37                              8
  CLUS_2                            6                              2
  CLUS_3                            7                              3
  CLUS_4                           32                              5
  CLUS_5                           15                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(18Q22.3) MUTATED       41     21     35
  DEL PEAK 29(18Q22.3) WILD-TYPE     10      4      7
D45V4, multiclass
        clus
vv       DEL PEAK 29(18Q22.3) MUTATED DEL PEAK 29(18Q22.3) WILD-TYPE
  CLUS_1                           41                             10
  CLUS_2                           21                              4
  CLUS_3                           35                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(18Q22.3) MUTATED       25     28     30     16      7     18
  DEL PEAK 29(18Q22.3) WILD-TYPE      9      2      3      6      1      4
                                vv
clus                             CLUS_7
  DEL PEAK 29(18Q22.3) MUTATED        1
  DEL PEAK 29(18Q22.3) WILD-TYPE      0
D45V5, multiclass
        clus
vv       DEL PEAK 29(18Q22.3) MUTATED DEL PEAK 29(18Q22.3) WILD-TYPE
  CLUS_1                           25                              9
  CLUS_2                           28                              2
  CLUS_3                           30                              3
  CLUS_4                           16                              6
  CLUS_5                            7                              1
  CLUS_6                           18                              4
  CLUS_7                            1                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(18Q22.3) MUTATED       33     25     12     17      7     21
  DEL PEAK 29(18Q22.3) WILD-TYPE     10      2      0      7      1      2
                                vv
clus                             CLUS_7
  DEL PEAK 29(18Q22.3) MUTATED       10
  DEL PEAK 29(18Q22.3) WILD-TYPE      3
D45V6, multiclass
        clus
vv       DEL PEAK 29(18Q22.3) MUTATED DEL PEAK 29(18Q22.3) WILD-TYPE
  CLUS_1                           33                             10
  CLUS_2                           25                              2
  CLUS_3                           12                              0
  CLUS_4                           17                              7
  CLUS_5                            7                              1
  CLUS_6                           21                              2
  CLUS_7                           10                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(18Q22.3) MUTATED       41     53     31
  DEL PEAK 29(18Q22.3) WILD-TYPE     10      4     11
D45V7, multiclass
        clus
vv       DEL PEAK 29(18Q22.3) MUTATED DEL PEAK 29(18Q22.3) WILD-TYPE
  CLUS_1                           41                             10
  CLUS_2                           53                              4
  CLUS_3                           31                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(18Q22.3) MUTATED       58     36     31
  DEL PEAK 29(18Q22.3) WILD-TYPE     12      2     11
D45V8, multiclass
        clus
vv       DEL PEAK 29(18Q22.3) MUTATED DEL PEAK 29(18Q22.3) WILD-TYPE
  CLUS_1                           58                             12
  CLUS_2                           36                              2
  CLUS_3                           31                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(18Q22.3) MUTATED       57     33     35
  DEL PEAK 29(18Q22.3) WILD-TYPE     12      3     10
D45V9, multiclass
        clus
vv       DEL PEAK 29(18Q22.3) MUTATED DEL PEAK 29(18Q22.3) WILD-TYPE
  CLUS_1                           57                             12
  CLUS_2                           33                              3
  CLUS_3                           35                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(18Q22.3) MUTATED       24     34     17     18     18     14
  DEL PEAK 29(18Q22.3) WILD-TYPE     10      2      2      9      1      1
D45V10, multiclass
        clus
vv       DEL PEAK 29(18Q22.3) MUTATED DEL PEAK 29(18Q22.3) WILD-TYPE
  CLUS_1                           24                             10
  CLUS_2                           34                              2
  CLUS_3                           17                              2
  CLUS_4                           18                              9
  CLUS_5                           18                              1
  CLUS_6                           14                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 30(19Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(19Q13.33) MUTATED       14      1     37      6
  DEL PEAK 30(19Q13.33) WILD-TYPE     34     33     17      8
D46V1, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                            14                              34
  CLUS_2                             1                              33
  CLUS_3                            37                              17
  CLUS_4                             6                               8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(19Q13.33) MUTATED        5      0     29     24
  DEL PEAK 30(19Q13.33) WILD-TYPE     40     20      5     27
D46V2, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                             5                              40
  CLUS_2                             0                              20
  CLUS_3                            29                               5
  CLUS_4                            24                              27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(19Q13.33) MUTATED        1      2      4     25     15
  DEL PEAK 30(19Q13.33) WILD-TYPE     44      6      6     12      3
D46V3, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                             1                              44
  CLUS_2                             2                               6
  CLUS_3                             4                               6
  CLUS_4                            25                              12
  CLUS_5                            15                               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19Q13.33) MUTATED        1     15     31
  DEL PEAK 30(19Q13.33) WILD-TYPE     50     10     11
D46V4, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                             1                              50
  CLUS_2                            15                              10
  CLUS_3                            31                              11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(19Q13.33) MUTATED        0      1     28     14      1     14
  DEL PEAK 30(19Q13.33) WILD-TYPE     34     29      5      8      7      8
                                 vv
clus                              CLUS_7
  DEL PEAK 30(19Q13.33) MUTATED        0
  DEL PEAK 30(19Q13.33) WILD-TYPE      1
D46V5, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                             0                              34
  CLUS_2                             1                              29
  CLUS_3                            28                               5
  CLUS_4                            14                               8
  CLUS_5                             1                               7
  CLUS_6                            14                               8
  CLUS_7                             0                               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(19Q13.33) MUTATED        0      1     11     14      5     20
  DEL PEAK 30(19Q13.33) WILD-TYPE     43     26      1     10      3      3
                                 vv
clus                              CLUS_7
  DEL PEAK 30(19Q13.33) MUTATED        7
  DEL PEAK 30(19Q13.33) WILD-TYPE      6
D46V6, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                             0                              43
  CLUS_2                             1                              26
  CLUS_3                            11                               1
  CLUS_4                            14                              10
  CLUS_5                             5                               3
  CLUS_6                            20                               3
  CLUS_7                             7                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19Q13.33) MUTATED        1     32     25
  DEL PEAK 30(19Q13.33) WILD-TYPE     50     25     17
D46V7, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                             1                              50
  CLUS_2                            32                              25
  CLUS_3                            25                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19Q13.33) MUTATED        1     32     25
  DEL PEAK 30(19Q13.33) WILD-TYPE     69      6     17
D46V8, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                             1                              69
  CLUS_2                            32                               6
  CLUS_3                            25                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19Q13.33) MUTATED        1     28     29
  DEL PEAK 30(19Q13.33) WILD-TYPE     68      8     16
D46V9, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                             1                              68
  CLUS_2                            28                               8
  CLUS_3                            29                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(19Q13.33) MUTATED        0      1     15     14     16     12
  DEL PEAK 30(19Q13.33) WILD-TYPE     34     35      4     13      3      3
D46V10, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                             0                              34
  CLUS_2                             1                              35
  CLUS_3                            15                               4
  CLUS_4                            14                              13
  CLUS_5                            16                               3
  CLUS_6                            12                               3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 31(19Q13.42) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(19Q13.42) MUTATED       14      1     36      6
  DEL PEAK 31(19Q13.42) WILD-TYPE     34     33     18      8
D47V1, multiclass
        clus
vv       DEL PEAK 31(19Q13.42) MUTATED DEL PEAK 31(19Q13.42) WILD-TYPE
  CLUS_1                            14                              34
  CLUS_2                             1                              33
  CLUS_3                            36                              18
  CLUS_4                             6                               8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(19Q13.42) MUTATED        5      0     29     23
  DEL PEAK 31(19Q13.42) WILD-TYPE     40     20      5     28
D47V2, multiclass
        clus
vv       DEL PEAK 31(19Q13.42) MUTATED DEL PEAK 31(19Q13.42) WILD-TYPE
  CLUS_1                             5                              40
  CLUS_2                             0                              20
  CLUS_3                            29                               5
  CLUS_4                            23                              28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(19Q13.42) MUTATED        1      2      4     24     15
  DEL PEAK 31(19Q13.42) WILD-TYPE     44      6      6     13      3
D47V3, multiclass
        clus
vv       DEL PEAK 31(19Q13.42) MUTATED DEL PEAK 31(19Q13.42) WILD-TYPE
  CLUS_1                             1                              44
  CLUS_2                             2                               6
  CLUS_3                             4                               6
  CLUS_4                            24                              13
  CLUS_5                            15                               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19Q13.42) MUTATED        1     15     30
  DEL PEAK 31(19Q13.42) WILD-TYPE     50     10     12
D47V4, multiclass
        clus
vv       DEL PEAK 31(19Q13.42) MUTATED DEL PEAK 31(19Q13.42) WILD-TYPE
  CLUS_1                             1                              50
  CLUS_2                            15                              10
  CLUS_3                            30                              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(19Q13.42) MUTATED        0      1     28     13      1     14
  DEL PEAK 31(19Q13.42) WILD-TYPE     34     29      5      9      7      8
                                 vv
clus                              CLUS_7
  DEL PEAK 31(19Q13.42) MUTATED        0
  DEL PEAK 31(19Q13.42) WILD-TYPE      1
D47V5, multiclass
        clus
vv       DEL PEAK 31(19Q13.42) MUTATED DEL PEAK 31(19Q13.42) WILD-TYPE
  CLUS_1                             0                              34
  CLUS_2                             1                              29
  CLUS_3                            28                               5
  CLUS_4                            13                               9
  CLUS_5                             1                               7
  CLUS_6                            14                               8
  CLUS_7                             0                               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(19Q13.42) MUTATED        0      1     11     13      5     20
  DEL PEAK 31(19Q13.42) WILD-TYPE     43     26      1     11      3      3
                                 vv
clus                              CLUS_7
  DEL PEAK 31(19Q13.42) MUTATED        7
  DEL PEAK 31(19Q13.42) WILD-TYPE      6
D47V6, multiclass
        clus
vv       DEL PEAK 31(19Q13.42) MUTATED DEL PEAK 31(19Q13.42) WILD-TYPE
  CLUS_1                             0                              43
  CLUS_2                             1                              26
  CLUS_3                            11                               1
  CLUS_4                            13                              11
  CLUS_5                             5                               3
  CLUS_6                            20                               3
  CLUS_7                             7                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19Q13.42) MUTATED        1     32     24
  DEL PEAK 31(19Q13.42) WILD-TYPE     50     25     18
D47V7, multiclass
        clus
vv       DEL PEAK 31(19Q13.42) MUTATED DEL PEAK 31(19Q13.42) WILD-TYPE
  CLUS_1                             1                              50
  CLUS_2                            32                              25
  CLUS_3                            24                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19Q13.42) MUTATED        1     32     24
  DEL PEAK 31(19Q13.42) WILD-TYPE     69      6     18
D47V8, multiclass
        clus
vv       DEL PEAK 31(19Q13.42) MUTATED DEL PEAK 31(19Q13.42) WILD-TYPE
  CLUS_1                             1                              69
  CLUS_2                            32                               6
  CLUS_3                            24                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19Q13.42) MUTATED        1     28     28
  DEL PEAK 31(19Q13.42) WILD-TYPE     68      8     17
D47V9, multiclass
        clus
vv       DEL PEAK 31(19Q13.42) MUTATED DEL PEAK 31(19Q13.42) WILD-TYPE
  CLUS_1                             1                              68
  CLUS_2                            28                               8
  CLUS_3                            28                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(19Q13.42) MUTATED        0      1     15     13     16     12
  DEL PEAK 31(19Q13.42) WILD-TYPE     34     35      4     14      3      3
D47V10, multiclass
        clus
vv       DEL PEAK 31(19Q13.42) MUTATED DEL PEAK 31(19Q13.42) WILD-TYPE
  CLUS_1                             0                              34
  CLUS_2                             1                              35
  CLUS_3                            15                               4
  CLUS_4                            13                              14
  CLUS_5                            16                               3
  CLUS_6                            12                               3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 32(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(20P12.1) MUTATED        6      8     14      1
  DEL PEAK 32(20P12.1) WILD-TYPE     42     26     40     13
D48V1, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            6                             42
  CLUS_2                            8                             26
  CLUS_3                           14                             40
  CLUS_4                            1                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(20P12.1) MUTATED        7      4     10      8
  DEL PEAK 32(20P12.1) WILD-TYPE     38     16     24     43
D48V2, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            7                             38
  CLUS_2                            4                             16
  CLUS_3                           10                             24
  CLUS_4                            8                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(20P12.1) MUTATED        7      1      3      6      6
  DEL PEAK 32(20P12.1) WILD-TYPE     38      7      7     31     12
D48V3, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            7                             38
  CLUS_2                            1                              7
  CLUS_3                            3                              7
  CLUS_4                            6                             31
  CLUS_5                            6                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(20P12.1) MUTATED        8      7      8
  DEL PEAK 32(20P12.1) WILD-TYPE     43     18     34
D48V4, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            8                             43
  CLUS_2                            7                             18
  CLUS_3                            8                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(20P12.1) MUTATED        2      8     10      6      1      2
  DEL PEAK 32(20P12.1) WILD-TYPE     32     22     23     16      7     20
                                vv
clus                             CLUS_7
  DEL PEAK 32(20P12.1) MUTATED        0
  DEL PEAK 32(20P12.1) WILD-TYPE      1
D48V5, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            2                             32
  CLUS_2                            8                             22
  CLUS_3                           10                             23
  CLUS_4                            6                             16
  CLUS_5                            1                              7
  CLUS_6                            2                             20
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(20P12.1) MUTATED        3      8      3      5      2      7
  DEL PEAK 32(20P12.1) WILD-TYPE     40     19      9     19      6     16
                                vv
clus                             CLUS_7
  DEL PEAK 32(20P12.1) MUTATED        1
  DEL PEAK 32(20P12.1) WILD-TYPE     12
D48V6, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            3                             40
  CLUS_2                            8                             19
  CLUS_3                            3                              9
  CLUS_4                            5                             19
  CLUS_5                            2                              6
  CLUS_6                            7                             16
  CLUS_7                            1                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(20P12.1) MUTATED        5     17      7
  DEL PEAK 32(20P12.1) WILD-TYPE     46     40     35
D48V7, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            5                             46
  CLUS_2                           17                             40
  CLUS_3                            7                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(20P12.1) MUTATED       11     11      7
  DEL PEAK 32(20P12.1) WILD-TYPE     59     27     35
D48V8, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                           11                             59
  CLUS_2                           11                             27
  CLUS_3                            7                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(20P12.1) MUTATED       10     12      7
  DEL PEAK 32(20P12.1) WILD-TYPE     59     24     38
D48V9, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                           10                             59
  CLUS_2                           12                             24
  CLUS_3                            7                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(20P12.1) MUTATED        1     10      9      5      3      1
  DEL PEAK 32(20P12.1) WILD-TYPE     33     26     10     22     16     14
D48V10, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            1                             33
  CLUS_2                           10                             26
  CLUS_3                            9                             10
  CLUS_4                            5                             22
  CLUS_5                            3                             16
  CLUS_6                            1                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 33(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XP21.1) MUTATED        4      6     15      3
  DEL PEAK 33(XP21.1) WILD-TYPE     44     28     39     11
D49V1, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                           4                            44
  CLUS_2                           6                            28
  CLUS_3                          15                            39
  CLUS_4                           3                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XP21.1) MUTATED        2      6      5     15
  DEL PEAK 33(XP21.1) WILD-TYPE     43     14     29     36
D49V2, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                           2                            43
  CLUS_2                           6                            14
  CLUS_3                           5                            29
  CLUS_4                          15                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(XP21.1) MUTATED        9      1      2     10      3
  DEL PEAK 33(XP21.1) WILD-TYPE     36      7      8     27     15
D49V3, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                           9                            36
  CLUS_2                           1                             7
  CLUS_3                           2                             8
  CLUS_4                          10                            27
  CLUS_5                           3                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XP21.1) MUTATED        9      5     11
  DEL PEAK 33(XP21.1) WILD-TYPE     42     20     31
D49V4, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                           9                            42
  CLUS_2                           5                            20
  CLUS_3                          11                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(XP21.1) MUTATED        3      7      5      9      0      4
  DEL PEAK 33(XP21.1) WILD-TYPE     31     23     28     13      8     18
                               vv
clus                            CLUS_7
  DEL PEAK 33(XP21.1) MUTATED        0
  DEL PEAK 33(XP21.1) WILD-TYPE      1
D49V5, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                           3                            31
  CLUS_2                           7                            23
  CLUS_3                           5                            28
  CLUS_4                           9                            13
  CLUS_5                           0                             8
  CLUS_6                           4                            18
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(XP21.1) MUTATED        3      7      2      7      0      4
  DEL PEAK 33(XP21.1) WILD-TYPE     40     20     10     17      8     19
                               vv
clus                            CLUS_7
  DEL PEAK 33(XP21.1) MUTATED        5
  DEL PEAK 33(XP21.1) WILD-TYPE      8
D49V6, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                           3                            40
  CLUS_2                           7                            20
  CLUS_3                           2                            10
  CLUS_4                           7                            17
  CLUS_5                           0                             8
  CLUS_6                           4                            19
  CLUS_7                           5                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XP21.1) MUTATED        6      9     13
  DEL PEAK 33(XP21.1) WILD-TYPE     45     48     29
D49V7, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                           6                            45
  CLUS_2                           9                            48
  CLUS_3                          13                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XP21.1) MUTATED       10      5     13
  DEL PEAK 33(XP21.1) WILD-TYPE     60     33     29
D49V8, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                          10                            60
  CLUS_2                           5                            33
  CLUS_3                          13                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XP21.1) MUTATED       10      4     14
  DEL PEAK 33(XP21.1) WILD-TYPE     59     32     31
D49V9, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                          10                            59
  CLUS_2                           4                            32
  CLUS_3                          14                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(XP21.1) MUTATED        1      9      2     10      2      4
  DEL PEAK 33(XP21.1) WILD-TYPE     33     27     17     17     17     11
D49V10, multiclass
        clus
vv       DEL PEAK 33(XP21.1) MUTATED DEL PEAK 33(XP21.1) WILD-TYPE
  CLUS_1                           1                            33
  CLUS_2                           9                            27
  CLUS_3                           2                            17
  CLUS_4                          10                            17
  CLUS_5                           2                            17
  CLUS_6                           4                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 34(XQ27.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XQ27.3) MUTATED        2      7     18      3
  DEL PEAK 34(XQ27.3) WILD-TYPE     46     27     36     11
D50V1, multiclass
        clus
vv       DEL PEAK 34(XQ27.3) MUTATED DEL PEAK 34(XQ27.3) WILD-TYPE
  CLUS_1                           2                            46
  CLUS_2                           7                            27
  CLUS_3                          18                            36
  CLUS_4                           3                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XQ27.3) MUTATED        2      6      5     17
  DEL PEAK 34(XQ27.3) WILD-TYPE     43     14     29     34
D50V2, multiclass
        clus
vv       DEL PEAK 34(XQ27.3) MUTATED DEL PEAK 34(XQ27.3) WILD-TYPE
  CLUS_1                           2                            43
  CLUS_2                           6                            14
  CLUS_3                           5                            29
  CLUS_4                          17                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(XQ27.3) MUTATED       10      0      1     13      2
  DEL PEAK 34(XQ27.3) WILD-TYPE     35      8      9     24     16
D50V3, multiclass
        clus
vv       DEL PEAK 34(XQ27.3) MUTATED DEL PEAK 34(XQ27.3) WILD-TYPE
  CLUS_1                          10                            35
  CLUS_2                           0                             8
  CLUS_3                           1                             9
  CLUS_4                          13                            24
  CLUS_5                           2                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ27.3) MUTATED       10      5     11
  DEL PEAK 34(XQ27.3) WILD-TYPE     41     20     31
D50V4, multiclass
        clus
vv       DEL PEAK 34(XQ27.3) MUTATED DEL PEAK 34(XQ27.3) WILD-TYPE
  CLUS_1                          10                            41
  CLUS_2                           5                            20
  CLUS_3                          11                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(XQ27.3) MUTATED        4      7      3     11      0      5
  DEL PEAK 34(XQ27.3) WILD-TYPE     30     23     30     11      8     17
                               vv
clus                            CLUS_7
  DEL PEAK 34(XQ27.3) MUTATED        0
  DEL PEAK 34(XQ27.3) WILD-TYPE      1
D50V5, multiclass
        clus
vv       DEL PEAK 34(XQ27.3) MUTATED DEL PEAK 34(XQ27.3) WILD-TYPE
  CLUS_1                           4                            30
  CLUS_2                           7                            23
  CLUS_3                           3                            30
  CLUS_4                          11                            11
  CLUS_5                           0                             8
  CLUS_6                           5                            17
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(XQ27.3) MUTATED        4      7      4      8      0      3
  DEL PEAK 34(XQ27.3) WILD-TYPE     39     20      8     16      8     20
                               vv
clus                            CLUS_7
  DEL PEAK 34(XQ27.3) MUTATED        4
  DEL PEAK 34(XQ27.3) WILD-TYPE      9
D50V6, multiclass
        clus
vv       DEL PEAK 34(XQ27.3) MUTATED DEL PEAK 34(XQ27.3) WILD-TYPE
  CLUS_1                           4                            39
  CLUS_2                           7                            20
  CLUS_3                           4                             8
  CLUS_4                           8                            16
  CLUS_5                           0                             8
  CLUS_6                           3                            20
  CLUS_7                           4                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ27.3) MUTATED        8      7     15
  DEL PEAK 34(XQ27.3) WILD-TYPE     43     50     27
D50V7, multiclass
        clus
vv       DEL PEAK 34(XQ27.3) MUTATED DEL PEAK 34(XQ27.3) WILD-TYPE
  CLUS_1                           8                            43
  CLUS_2                           7                            50
  CLUS_3                          15                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ27.3) MUTATED       11      4     15
  DEL PEAK 34(XQ27.3) WILD-TYPE     59     34     27
D50V8, multiclass
        clus
vv       DEL PEAK 34(XQ27.3) MUTATED DEL PEAK 34(XQ27.3) WILD-TYPE
  CLUS_1                          11                            59
  CLUS_2                           4                            34
  CLUS_3                          15                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ27.3) MUTATED       11      5     14
  DEL PEAK 34(XQ27.3) WILD-TYPE     58     31     31
D50V9, multiclass
        clus
vv       DEL PEAK 34(XQ27.3) MUTATED DEL PEAK 34(XQ27.3) WILD-TYPE
  CLUS_1                          11                            58
  CLUS_2                           5                            31
  CLUS_3                          14                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(XQ27.3) MUTATED        4      7      5     10      0      4
  DEL PEAK 34(XQ27.3) WILD-TYPE     30     29     14     17     19     11
D50V10, multiclass
        clus
vv       DEL PEAK 34(XQ27.3) MUTATED DEL PEAK 34(XQ27.3) WILD-TYPE
  CLUS_1                           4                            30
  CLUS_2                           7                            29
  CLUS_3                           5                            14
  CLUS_4                          10                            17
  CLUS_5                           0                            19
  CLUS_6                           4                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
