[1] "ofn"        "-oTTGCT-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/TGCT-TP/22541961/TGCT-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/TGCT-TP/22570895/transformed.cor.cli.txt"

nPatients in clinical file=150, in cluster file=147, common to both=147
[1] "Reduce the number of clustering variables from 61 to 59."
[1]  59 147
[1] "FAM18B2 MUTATION ANALYSIS"
[1] 3
  FAM18B2 MUTATED FAM18B2 WILD-TYPE 
               26               121 
  FAM18B2 MUTATED FAM18B2 WILD-TYPE 
               26               121 
[1] "KIT MUTATION ANALYSIS"
[1] 3
  KIT MUTATED KIT WILD-TYPE 
           26           121 
  KIT MUTATED KIT WILD-TYPE 
           26           121 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            19            128 
  KRAS MUTATED KRAS WILD-TYPE 
            19            128 
[1] "FAM104B MUTATION ANALYSIS"
[1] 3
  FAM104B MUTATED FAM104B WILD-TYPE 
                7               140 
  FAM104B MUTATED FAM104B WILD-TYPE 
                7               140 
[1] "CSGALNACT2 MUTATION ANALYSIS"
[1] 3
  CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE 
                   5                  142 
  CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE 
                   5                  142 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
             7            140 
  NRAS MUTATED NRAS WILD-TYPE 
             7            140 
[1] "DDX11 MUTATION ANALYSIS"
[1] 3
  DDX11 MUTATED DDX11 WILD-TYPE 
              8             139 
  DDX11 MUTATED DDX11 WILD-TYPE 
              8             139 
[1] "MUC6 MUTATION ANALYSIS"
[1] 3
  MUC6 MUTATED MUC6 WILD-TYPE 
            15            132 
  MUC6 MUTATED MUC6 WILD-TYPE 
            15            132 
[1] "PNPLA4 MUTATION ANALYSIS"
[1] 3
  PNPLA4 MUTATED PNPLA4 WILD-TYPE 
               5              142 
  PNPLA4 MUTATED PNPLA4 WILD-TYPE 
               5              142 
[1] "SERINC2 MUTATION ANALYSIS"
[1] 3
  SERINC2 MUTATED SERINC2 WILD-TYPE 
                4               143 
  SERINC2 MUTATED SERINC2 WILD-TYPE 
                4               143 
[1] "RHPN2 MUTATION ANALYSIS"
[1] 3
  RHPN2 MUTATED RHPN2 WILD-TYPE 
              6             141 
  RHPN2 MUTATED RHPN2 WILD-TYPE 
              6             141 
[1] "RBM10 MUTATION ANALYSIS"
[1] 3
  RBM10 MUTATED RBM10 WILD-TYPE 
              5             142 
  RBM10 MUTATED RBM10 WILD-TYPE 
              5             142 
[1] "HSF4 MUTATION ANALYSIS"
[1] 3
  HSF4 MUTATED HSF4 WILD-TYPE 
             6            141 
  HSF4 MUTATED HSF4 WILD-TYPE 
             6            141 
[1] "CDC27 MUTATION ANALYSIS"
[1] 3
  CDC27 MUTATED CDC27 WILD-TYPE 
              6             141 
  CDC27 MUTATED CDC27 WILD-TYPE 
              6             141 
[1] "MLLT3 MUTATION ANALYSIS"
[1] 3
  MLLT3 MUTATED MLLT3 WILD-TYPE 
              4             143 
  MLLT3 MUTATED MLLT3 WILD-TYPE 
              4             143 
[1] "ERC1 MUTATION ANALYSIS"
[1] 3
  ERC1 MUTATED ERC1 WILD-TYPE 
             7            140 
  ERC1 MUTATED ERC1 WILD-TYPE 
             7            140 
[1] "MEF2A MUTATION ANALYSIS"
[1] 3
  MEF2A MUTATED MEF2A WILD-TYPE 
              3             144 
  MEF2A MUTATED MEF2A WILD-TYPE 
              3             144 
[1] "SP8 MUTATION ANALYSIS"
[1] 3
  SP8 MUTATED SP8 WILD-TYPE 
            6           141 
  SP8 MUTATED SP8 WILD-TYPE 
            6           141 
[1] "NAT10 MUTATION ANALYSIS"
[1] 3
  NAT10 MUTATED NAT10 WILD-TYPE 
              4             143 
  NAT10 MUTATED NAT10 WILD-TYPE 
              4             143 
[1] "SPIN2A MUTATION ANALYSIS"
[1] 3
  SPIN2A MUTATED SPIN2A WILD-TYPE 
               3              144 
  SPIN2A MUTATED SPIN2A WILD-TYPE 
               3              144 
[1] "DEK MUTATION ANALYSIS"
[1] 3
  DEK MUTATED DEK WILD-TYPE 
            5           142 
  DEK MUTATED DEK WILD-TYPE 
            5           142 
[1] "FANK1 MUTATION ANALYSIS"
[1] 3
  FANK1 MUTATED FANK1 WILD-TYPE 
              4             143 
  FANK1 MUTATED FANK1 WILD-TYPE 
              4             143 
[1] "ANKRD11 MUTATION ANALYSIS"
[1] 3
  ANKRD11 MUTATED ANKRD11 WILD-TYPE 
                7               140 
  ANKRD11 MUTATED ANKRD11 WILD-TYPE 
                7               140 
[1] "C22ORF43 MUTATION ANALYSIS"
[1] 3
  C22ORF43 MUTATED C22ORF43 WILD-TYPE 
                 3                144 
  C22ORF43 MUTATED C22ORF43 WILD-TYPE 
                 3                144 
[1] "ATXN3 MUTATION ANALYSIS"
[1] 3
  ATXN3 MUTATED ATXN3 WILD-TYPE 
              3             144 
  ATXN3 MUTATED ATXN3 WILD-TYPE 
              3             144 
[1] "TPTE2 MUTATION ANALYSIS"
[1] 3
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              5             142 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              5             142 
[1] "KRTAP10-10 MUTATION ANALYSIS"
[1] 3
  KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE 
                   5                  142 
  KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE 
                   5                  142 
[1] "ZNF680 MUTATION ANALYSIS"
[1] 3
  ZNF680 MUTATED ZNF680 WILD-TYPE 
               3              144 
  ZNF680 MUTATED ZNF680 WILD-TYPE 
               3              144 
[1] "RAC1 MUTATION ANALYSIS"
[1] 3
  RAC1 MUTATED RAC1 WILD-TYPE 
             4            143 
  RAC1 MUTATED RAC1 WILD-TYPE 
             4            143 
[1] "NBPF10 MUTATION ANALYSIS"
[1] 3
  NBPF10 MUTATED NBPF10 WILD-TYPE 
               7              140 
  NBPF10 MUTATED NBPF10 WILD-TYPE 
               7              140 
[1] "FAM8A1 MUTATION ANALYSIS"
[1] 3
  FAM8A1 MUTATED FAM8A1 WILD-TYPE 
               3              144 
  FAM8A1 MUTATED FAM8A1 WILD-TYPE 
               3              144 
[1] "PSMD11 MUTATION ANALYSIS"
[1] 3
  PSMD11 MUTATED PSMD11 WILD-TYPE 
               4              143 
  PSMD11 MUTATED PSMD11 WILD-TYPE 
               4              143 
[1] "KRTAP1-1 MUTATION ANALYSIS"
[1] 3
  KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE 
                 3                144 
  KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE 
                 3                144 
[1] "OPLAH MUTATION ANALYSIS"
[1] 3
  OPLAH MUTATED OPLAH WILD-TYPE 
              4             143 
  OPLAH MUTATED OPLAH WILD-TYPE 
              4             143 
[1] "FAM101B MUTATION ANALYSIS"
[1] 3
  FAM101B MUTATED FAM101B WILD-TYPE 
                4               143 
  FAM101B MUTATED FAM101B WILD-TYPE 
                4               143 
[1] "MUC2 MUTATION ANALYSIS"
[1] 3
  MUC2 MUTATED MUC2 WILD-TYPE 
            16            131 
  MUC2 MUTATED MUC2 WILD-TYPE 
            16            131 
[1] "HTT MUTATION ANALYSIS"
[1] 3
  HTT MUTATED HTT WILD-TYPE 
            3           144 
  HTT MUTATED HTT WILD-TYPE 
            3           144 
[1] "EZH2 MUTATION ANALYSIS"
[1] 3
  EZH2 MUTATED EZH2 WILD-TYPE 
             4            143 
  EZH2 MUTATED EZH2 WILD-TYPE 
             4            143 
[1] "PABPC3 MUTATION ANALYSIS"
[1] 3
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               4              143 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               4              143 
[1] "CUX1 MUTATION ANALYSIS"
[1] 3
  CUX1 MUTATED CUX1 WILD-TYPE 
             5            142 
  CUX1 MUTATED CUX1 WILD-TYPE 
             5            142 
[1] "DLC1 MUTATION ANALYSIS"
[1] 3
  DLC1 MUTATED DLC1 WILD-TYPE 
             3            144 
  DLC1 MUTATED DLC1 WILD-TYPE 
             3            144 
[1] "STAB1 MUTATION ANALYSIS"
[1] 3
  STAB1 MUTATED STAB1 WILD-TYPE 
              7             140 
  STAB1 MUTATED STAB1 WILD-TYPE 
              7             140 
[1] "NOTCH1 MUTATION ANALYSIS"
[1] 3
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
               5              142 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
               5              142 
[1] "AHDC1 MUTATION ANALYSIS"
[1] 3
  AHDC1 MUTATED AHDC1 WILD-TYPE 
              4             143 
  AHDC1 MUTATED AHDC1 WILD-TYPE 
              4             143 
[1] "EPAS1 MUTATION ANALYSIS"
[1] 3
  EPAS1 MUTATED EPAS1 WILD-TYPE 
              5             142 
  EPAS1 MUTATED EPAS1 WILD-TYPE 
              5             142 
[1] "PIK3CD MUTATION ANALYSIS"
[1] 3
  PIK3CD MUTATED PIK3CD WILD-TYPE 
               4              143 
  PIK3CD MUTATED PIK3CD WILD-TYPE 
               4              143 
[1] "BCL11B MUTATION ANALYSIS"
[1] 3
  BCL11B MUTATED BCL11B WILD-TYPE 
               5              142 
  BCL11B MUTATED BCL11B WILD-TYPE 
               5              142 
[1] "KIAA0430 MUTATION ANALYSIS"
[1] 3
  KIAA0430 MUTATED KIAA0430 WILD-TYPE 
                 3                144 
  KIAA0430 MUTATED KIAA0430 WILD-TYPE 
                 3                144 
[1] "MTIF3 MUTATION ANALYSIS"
[1] 3
  MTIF3 MUTATED MTIF3 WILD-TYPE 
              3             144 
  MTIF3 MUTATED MTIF3 WILD-TYPE 
              3             144 
[1] "BTN2A2 MUTATION ANALYSIS"
[1] 3
  BTN2A2 MUTATED BTN2A2 WILD-TYPE 
               3              144 
  BTN2A2 MUTATED BTN2A2 WILD-TYPE 
               3              144 
[1] "C17ORF64 MUTATION ANALYSIS"
[1] 3
  C17ORF64 MUTATED C17ORF64 WILD-TYPE 
                 3                144 
  C17ORF64 MUTATED C17ORF64 WILD-TYPE 
                 3                144 
[1] "RUNX2 MUTATION ANALYSIS"
[1] 3
  RUNX2 MUTATED RUNX2 WILD-TYPE 
              4             143 
  RUNX2 MUTATED RUNX2 WILD-TYPE 
              4             143 
[1] "SSBP3 MUTATION ANALYSIS"
[1] 3
  SSBP3 MUTATED SSBP3 WILD-TYPE 
              3             144 
  SSBP3 MUTATED SSBP3 WILD-TYPE 
              3             144 
[1] "GSX2 MUTATION ANALYSIS"
[1] 3
  GSX2 MUTATED GSX2 WILD-TYPE 
             4            143 
  GSX2 MUTATED GSX2 WILD-TYPE 
             4            143 
[1] "SP4 MUTATION ANALYSIS"
[1] 3
  SP4 MUTATED SP4 WILD-TYPE 
            4           143 
  SP4 MUTATED SP4 WILD-TYPE 
            4           143 
[1] "PCMTD1 MUTATION ANALYSIS"
[1] 3
  PCMTD1 MUTATED PCMTD1 WILD-TYPE 
               5              142 
  PCMTD1 MUTATED PCMTD1 WILD-TYPE 
               5              142 
[1] "RBM3 MUTATION ANALYSIS"
[1] 3
  RBM3 MUTATED RBM3 WILD-TYPE 
             3            144 
  RBM3 MUTATED RBM3 WILD-TYPE 
             3            144 
[1] "ZNF814 MUTATION ANALYSIS"
[1] 3
  ZNF814 MUTATED ZNF814 WILD-TYPE 
               5              142 
  ZNF814 MUTATED ZNF814 WILD-TYPE 
               5              142 
[1] "TTC38 MUTATION ANALYSIS"
[1] 3
  TTC38 MUTATED TTC38 WILD-TYPE 
              4             143 
  TTC38 MUTATED TTC38 WILD-TYPE 
              4             143 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 147 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 147 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=7, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = FAM18B2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM18B2 MUTATED        5      9     11      1
  FAM18B2 WILD-TYPE     42     23     43     13
D1V1, multiclass
        clus
vv       FAM18B2 MUTATED FAM18B2 WILD-TYPE
  CLUS_1               5                42
  CLUS_2               9                23
  CLUS_3              11                43
  CLUS_4               1                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM18B2 MUTATED        5      2      8     11
  FAM18B2 WILD-TYPE     38     18     26     39
D1V2, multiclass
        clus
vv       FAM18B2 MUTATED FAM18B2 WILD-TYPE
  CLUS_1               5                38
  CLUS_2               2                18
  CLUS_3               8                26
  CLUS_4              11                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM18B2 MUTATED        7      2      3      9      3
  FAM18B2 WILD-TYPE     37      6      7     27     15
D1V3, multiclass
        clus
vv       FAM18B2 MUTATED FAM18B2 WILD-TYPE
  CLUS_1               7                37
  CLUS_2               2                 6
  CLUS_3               3                 7
  CLUS_4               9                27
  CLUS_5               3                15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM18B2 MUTATED        9      7      8
  FAM18B2 WILD-TYPE     41     17     34
D1V4, multiclass
        clus
vv       FAM18B2 MUTATED FAM18B2 WILD-TYPE
  CLUS_1               9                41
  CLUS_2               7                17
  CLUS_3               8                34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM18B2 MUTATED        3      7      5      5      2      4      0
  FAM18B2 WILD-TYPE     30     22     28     17      6     17      1
D1V5, multiclass
        clus
vv       FAM18B2 MUTATED FAM18B2 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               7                22
  CLUS_3               5                28
  CLUS_4               5                17
  CLUS_5               2                 6
  CLUS_6               4                17
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM18B2 MUTATED        4      6      3      6      2      4      1
  FAM18B2 WILD-TYPE     38     20      9     18      6     19     11
D1V6, multiclass
        clus
vv       FAM18B2 MUTATED FAM18B2 WILD-TYPE
  CLUS_1               4                38
  CLUS_2               6                20
  CLUS_3               3                 9
  CLUS_4               6                18
  CLUS_5               2                 6
  CLUS_6               4                19
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM18B2 MUTATED        6     10     10
  FAM18B2 WILD-TYPE     44     46     31
D1V7, multiclass
        clus
vv       FAM18B2 MUTATED FAM18B2 WILD-TYPE
  CLUS_1               6                44
  CLUS_2              10                46
  CLUS_3              10                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM18B2 MUTATED       10      6     10
  FAM18B2 WILD-TYPE     58     32     31
D1V8, multiclass
        clus
vv       FAM18B2 MUTATED FAM18B2 WILD-TYPE
  CLUS_1              10                58
  CLUS_2               6                32
  CLUS_3              10                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM18B2 MUTATED       10      7      9
  FAM18B2 WILD-TYPE     57     29     35
D1V9, multiclass
        clus
vv       FAM18B2 MUTATED FAM18B2 WILD-TYPE
  CLUS_1              10                57
  CLUS_2               7                29
  CLUS_3               9                35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM18B2 MUTATED        4      6      4      7      4      1
  FAM18B2 WILD-TYPE     29     29     15     20     15     13
D1V10, multiclass
        clus
vv       FAM18B2 MUTATED FAM18B2 WILD-TYPE
  CLUS_1               4                29
  CLUS_2               6                29
  CLUS_3               4                15
  CLUS_4               7                20
  CLUS_5               4                15
  CLUS_6               1                13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = KIT MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIT MUTATED       15      5      3      3
  KIT WILD-TYPE     32     27     51     11
D2V1, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          15            32
  CLUS_2           5            27
  CLUS_3           3            51
  CLUS_4           3            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIT MUTATED       20      2      0      4
  KIT WILD-TYPE     23     18     34     46
D2V2, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          20            23
  CLUS_2           2            18
  CLUS_3           0            34
  CLUS_4           4            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIT MUTATED       18      3      0      1      0
  KIT WILD-TYPE     26      5     10     35     18
D2V3, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          18            26
  CLUS_2           3             5
  CLUS_3           0            10
  CLUS_4           1            35
  CLUS_5           0            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIT MUTATED       21      1      0
  KIT WILD-TYPE     29     23     42
D2V4, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          21            29
  CLUS_2           1            23
  CLUS_3           0            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIT MUTATED       23      0      0      0      2      1      0
  KIT WILD-TYPE     10     29     33     22      6     20      1
D2V5, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          23            10
  CLUS_2           0            29
  CLUS_3           0            33
  CLUS_4           0            22
  CLUS_5           2             6
  CLUS_6           1            20
  CLUS_7           0             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIT MUTATED       25      0      0      1      0      0      0
  KIT WILD-TYPE     17     26     12     23      8     23     12
D2V6, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          25            17
  CLUS_2           0            26
  CLUS_3           0            12
  CLUS_4           1            23
  CLUS_5           0             8
  CLUS_6           0            23
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIT MUTATED       23      2      1
  KIT WILD-TYPE     27     54     40
D2V7, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          23            27
  CLUS_2           2            54
  CLUS_3           1            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIT MUTATED       25      0      1
  KIT WILD-TYPE     43     38     40
D2V8, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          25            43
  CLUS_2           0            38
  CLUS_3           1            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIT MUTATED       25      0      1
  KIT WILD-TYPE     42     36     43
D2V9, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          25            42
  CLUS_2           0            36
  CLUS_3           1            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIT MUTATED       20      5      0      0      0      1
  KIT WILD-TYPE     13     30     19     27     19     13
D2V10, multiclass
        clus
vv       KIT MUTATED KIT WILD-TYPE
  CLUS_1          20            13
  CLUS_2           5            30
  CLUS_3           0            19
  CLUS_4           0            27
  CLUS_5           0            19
  CLUS_6           1            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = KRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED        6      9      1      3
  KRAS WILD-TYPE     41     23     53     11
D3V1, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            6             41
  CLUS_2            9             23
  CLUS_3            1             53
  CLUS_4            3             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED       10      3      0      6
  KRAS WILD-TYPE     33     17     34     44
D3V2, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           10             33
  CLUS_2            3             17
  CLUS_3            0             34
  CLUS_4            6             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED       11      2      0      1      0
  KRAS WILD-TYPE     33      6     10     35     18
D3V3, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           11             33
  CLUS_2            2              6
  CLUS_3            0             10
  CLUS_4            1             35
  CLUS_5            0             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       13      0      1
  KRAS WILD-TYPE     37     24     41
D3V4, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           13             37
  CLUS_2            0             24
  CLUS_3            1             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRAS MUTATED        8      7      0      1      3      0      0
  KRAS WILD-TYPE     25     22     33     21      5     21      1
D3V5, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            8             25
  CLUS_2            7             22
  CLUS_3            0             33
  CLUS_4            1             21
  CLUS_5            3              5
  CLUS_6            0             21
  CLUS_7            0              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRAS MUTATED       12      6      0      1      0      0      0
  KRAS WILD-TYPE     30     20     12     23      8     23     12
D3V6, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           12             30
  CLUS_2            6             20
  CLUS_3            0             12
  CLUS_4            1             23
  CLUS_5            0              8
  CLUS_6            0             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       16      2      1
  KRAS WILD-TYPE     34     54     40
D3V7, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           16             34
  CLUS_2            2             54
  CLUS_3            1             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       18      0      1
  KRAS WILD-TYPE     50     38     40
D3V8, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           18             50
  CLUS_2            0             38
  CLUS_3            1             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       18      0      1
  KRAS WILD-TYPE     49     36     43
D3V9, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           18             49
  CLUS_2            0             36
  CLUS_3            1             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRAS MUTATED        8     10      0      1      0      0
  KRAS WILD-TYPE     25     25     19     26     19     14
D3V10, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            8             25
  CLUS_2           10             25
  CLUS_3            0             19
  CLUS_4            1             26
  CLUS_5            0             19
  CLUS_6            0             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = FAM104B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM104B MUTATED        3      3      0      1
  FAM104B WILD-TYPE     44     29     54     13
D4V1, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               3                44
  CLUS_2               3                29
  CLUS_3               0                54
  CLUS_4               1                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM104B MUTATED        4      0      1      2
  FAM104B WILD-TYPE     39     20     33     48
D4V2, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               4                39
  CLUS_2               0                20
  CLUS_3               1                33
  CLUS_4               2                48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM104B MUTATED        3      1      0      0      1
  FAM104B WILD-TYPE     41      7     10     36     17
D4V3, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               3                41
  CLUS_2               1                 7
  CLUS_3               0                10
  CLUS_4               0                36
  CLUS_5               1                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM104B MUTATED        3      0      2
  FAM104B WILD-TYPE     47     24     40
D4V4, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               3                47
  CLUS_2               0                24
  CLUS_3               2                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM104B MUTATED        5      0      2      0      0      0      0
  FAM104B WILD-TYPE     28     29     31     22      8     21      1
D4V5, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               5                28
  CLUS_2               0                29
  CLUS_3               2                31
  CLUS_4               0                22
  CLUS_5               0                 8
  CLUS_6               0                21
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM104B MUTATED        5      0      1      0      0      1      0
  FAM104B WILD-TYPE     37     26     11     24      8     22     12
D4V6, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               5                37
  CLUS_2               0                26
  CLUS_3               1                11
  CLUS_4               0                24
  CLUS_5               0                 8
  CLUS_6               1                22
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM104B MUTATED        5      2      0
  FAM104B WILD-TYPE     45     54     41
D4V7, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               5                45
  CLUS_2               2                54
  CLUS_3               0                41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM104B MUTATED        5      2      0
  FAM104B WILD-TYPE     63     36     41
D4V8, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               5                63
  CLUS_2               2                36
  CLUS_3               0                41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM104B MUTATED        5      1      1
  FAM104B WILD-TYPE     62     35     43
D4V9, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               5                62
  CLUS_2               1                35
  CLUS_3               1                43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM104B MUTATED        2      3      0      0      1      1
  FAM104B WILD-TYPE     31     32     19     27     18     13
D4V10, multiclass
        clus
vv       FAM104B MUTATED FAM104B WILD-TYPE
  CLUS_1               2                31
  CLUS_2               3                32
  CLUS_3               0                19
  CLUS_4               0                27
  CLUS_5               1                18
  CLUS_6               1                13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = CSGALNACT2 MUTATION ANALYSIS
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT2 MUTATED        0      0      5      0
  CSGALNACT2 WILD-TYPE     47     32     49     14
D5V1, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   47
  CLUS_2                  0                   32
  CLUS_3                  5                   49
  CLUS_4                  0                   14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT2 MUTATED        0      0      1      4
  CSGALNACT2 WILD-TYPE     43     20     33     46
D5V2, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   43
  CLUS_2                  0                   20
  CLUS_3                  1                   33
  CLUS_4                  4                   46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSGALNACT2 MUTATED        0      0      0      5      0
  CSGALNACT2 WILD-TYPE     44      8     10     31     18
D5V3, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   44
  CLUS_2                  0                    8
  CLUS_3                  0                   10
  CLUS_4                  5                   31
  CLUS_5                  0                   18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        0      3      2
  CSGALNACT2 WILD-TYPE     50     21     40
D5V4, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   50
  CLUS_2                  3                   21
  CLUS_3                  2                   40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CSGALNACT2 MUTATED        0      0      0      0      0      5      0
  CSGALNACT2 WILD-TYPE     33     29     33     22      8     16      1
D5V5, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   33
  CLUS_2                  0                   29
  CLUS_3                  0                   33
  CLUS_4                  0                   22
  CLUS_5                  0                    8
  CLUS_6                  5                   16
  CLUS_7                  0                    1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CSGALNACT2 MUTATED        0      0      2      3      0      0      0
  CSGALNACT2 WILD-TYPE     42     26     10     21      8     23     12
D5V6, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   42
  CLUS_2                  0                   26
  CLUS_3                  2                   10
  CLUS_4                  3                   21
  CLUS_5                  0                    8
  CLUS_6                  0                   23
  CLUS_7                  0                   12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        0      1      4
  CSGALNACT2 WILD-TYPE     50     55     37
D5V7, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   50
  CLUS_2                  1                   55
  CLUS_3                  4                   37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        0      1      4
  CSGALNACT2 WILD-TYPE     68     37     37
D5V8, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   68
  CLUS_2                  1                   37
  CLUS_3                  4                   37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        0      1      4
  CSGALNACT2 WILD-TYPE     67     35     40
D5V9, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   67
  CLUS_2                  1                   35
  CLUS_3                  4                   40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSGALNACT2 MUTATED        0      0      1      2      0      2
  CSGALNACT2 WILD-TYPE     33     35     18     25     19     12
D5V10, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   33
  CLUS_2                  0                   35
  CLUS_3                  1                   18
  CLUS_4                  2                   25
  CLUS_5                  0                   19
  CLUS_6                  2                   12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = NRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        4      3      0      0
  NRAS WILD-TYPE     43     29     54     14
D6V1, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            4             43
  CLUS_2            3             29
  CLUS_3            0             54
  CLUS_4            0             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        4      1      0      2
  NRAS WILD-TYPE     39     19     34     48
D6V2, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            4             39
  CLUS_2            1             19
  CLUS_3            0             34
  CLUS_4            2             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRAS MUTATED        4      1      0      0      0
  NRAS WILD-TYPE     40      7     10     36     18
D6V3, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            4             40
  CLUS_2            1              7
  CLUS_3            0             10
  CLUS_4            0             36
  CLUS_5            0             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        5      0      0
  NRAS WILD-TYPE     45     24     42
D6V4, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            5             45
  CLUS_2            0             24
  CLUS_3            0             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NRAS MUTATED        6      1      0      0      0      0      0
  NRAS WILD-TYPE     27     28     33     22      8     21      1
D6V5, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            6             27
  CLUS_2            1             28
  CLUS_3            0             33
  CLUS_4            0             22
  CLUS_5            0              8
  CLUS_6            0             21
  CLUS_7            0              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NRAS MUTATED        6      1      0      0      0      0      0
  NRAS WILD-TYPE     36     25     12     24      8     23     12
D6V6, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            6             36
  CLUS_2            1             25
  CLUS_3            0             12
  CLUS_4            0             24
  CLUS_5            0              8
  CLUS_6            0             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        5      2      0
  NRAS WILD-TYPE     45     54     41
D6V7, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            5             45
  CLUS_2            2             54
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        7      0      0
  NRAS WILD-TYPE     61     38     41
D6V8, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            7             61
  CLUS_2            0             38
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        6      1      0
  NRAS WILD-TYPE     61     35     44
D6V9, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            6             61
  CLUS_2            1             35
  CLUS_3            0             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NRAS MUTATED        3      4      0      0      0      0
  NRAS WILD-TYPE     30     31     19     27     19     14
D6V10, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            3             30
  CLUS_2            4             31
  CLUS_3            0             19
  CLUS_4            0             27
  CLUS_5            0             19
  CLUS_6            0             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = DDX11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX11 MUTATED        3      1      3      1
  DDX11 WILD-TYPE     44     31     51     13
D7V1, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              31
  CLUS_3             3              51
  CLUS_4             1              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX11 MUTATED        2      0      3      3
  DDX11 WILD-TYPE     41     20     31     47
D7V2, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             2              41
  CLUS_2             0              20
  CLUS_3             3              31
  CLUS_4             3              47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX11 MUTATED        2      1      0      2      2
  DDX11 WILD-TYPE     42      7     10     34     16
D7V3, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             2              34
  CLUS_5             2              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX11 MUTATED        2      0      5
  DDX11 WILD-TYPE     48     24     37
D7V4, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             0              24
  CLUS_3             5              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX11 MUTATED        1      2      4      0      0      1      0
  DDX11 WILD-TYPE     32     27     29     22      8     20      1
D7V5, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              27
  CLUS_3             4              29
  CLUS_4             0              22
  CLUS_5             0               8
  CLUS_6             1              20
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DDX11 MUTATED        1      2      1      0      1      2      1
  DDX11 WILD-TYPE     41     24     11     24      7     21     11
D7V6, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             2              24
  CLUS_3             1              11
  CLUS_4             0              24
  CLUS_5             1               7
  CLUS_6             2              21
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX11 MUTATED        1      6      1
  DDX11 WILD-TYPE     49     50     40
D7V7, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             1              49
  CLUS_2             6              50
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX11 MUTATED        3      4      1
  DDX11 WILD-TYPE     65     34     40
D7V8, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             3              65
  CLUS_2             4              34
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX11 MUTATED        3      3      2
  DDX11 WILD-TYPE     64     33     42
D7V9, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             3              33
  CLUS_3             2              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX11 MUTATED        0      3      2      1      2      0
  DDX11 WILD-TYPE     33     32     17     26     17     14
D7V10, multiclass
        clus
vv       DDX11 MUTATED DDX11 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              32
  CLUS_3             2              17
  CLUS_4             1              26
  CLUS_5             2              17
  CLUS_6             0              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = MUC6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC6 MUTATED        6      3      5      1
  MUC6 WILD-TYPE     41     29     49     13
D8V1, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            6             41
  CLUS_2            3             29
  CLUS_3            5             49
  CLUS_4            1             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC6 MUTATED        5      0      4      6
  MUC6 WILD-TYPE     38     20     30     44
D8V2, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            5             38
  CLUS_2            0             20
  CLUS_3            4             30
  CLUS_4            6             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUC6 MUTATED        3      1      0      4      3
  MUC6 WILD-TYPE     41      7     10     32     15
D8V3, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            3             41
  CLUS_2            1              7
  CLUS_3            0             10
  CLUS_4            4             32
  CLUS_5            3             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC6 MUTATED        4      0      7
  MUC6 WILD-TYPE     46     24     35
D8V4, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            4             46
  CLUS_2            0             24
  CLUS_3            7             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MUC6 MUTATED        3      3      3      2      1      3      0
  MUC6 WILD-TYPE     30     26     30     20      7     18      1
D8V5, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            3             26
  CLUS_3            3             30
  CLUS_4            2             20
  CLUS_5            1              7
  CLUS_6            3             18
  CLUS_7            0              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MUC6 MUTATED        4      2      1      2      1      3      2
  MUC6 WILD-TYPE     38     24     11     22      7     20     10
D8V6, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            4             38
  CLUS_2            2             24
  CLUS_3            1             11
  CLUS_4            2             22
  CLUS_5            1              7
  CLUS_6            3             20
  CLUS_7            2             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC6 MUTATED        5      6      4
  MUC6 WILD-TYPE     45     50     37
D8V7, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            5             45
  CLUS_2            6             50
  CLUS_3            4             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC6 MUTATED        6      5      4
  MUC6 WILD-TYPE     62     33     37
D8V8, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            6             62
  CLUS_2            5             33
  CLUS_3            4             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC6 MUTATED        6      5      4
  MUC6 WILD-TYPE     61     31     40
D8V9, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            6             61
  CLUS_2            5             31
  CLUS_3            4             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MUC6 MUTATED        3      3      3      4      2      0
  MUC6 WILD-TYPE     30     32     16     23     17     14
D8V10, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            3             32
  CLUS_3            3             16
  CLUS_4            4             23
  CLUS_5            2             17
  CLUS_6            0             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = PNPLA4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA4 MUTATED        3      1      1      0
  PNPLA4 WILD-TYPE     44     31     53     14
D9V1, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              1               31
  CLUS_3              1               53
  CLUS_4              0               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA4 MUTATED        3      0      1      1
  PNPLA4 WILD-TYPE     40     20     33     49
D9V2, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              3               40
  CLUS_2              0               20
  CLUS_3              1               33
  CLUS_4              1               49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNPLA4 MUTATED        3      1      0      1      0
  PNPLA4 WILD-TYPE     41      7     10     35     18
D9V3, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4              1               35
  CLUS_5              0               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA4 MUTATED        3      0      2
  PNPLA4 WILD-TYPE     47     24     40
D9V4, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              0               24
  CLUS_3              2               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PNPLA4 MUTATED        3      0      1      0      0      1      0
  PNPLA4 WILD-TYPE     30     29     32     22      8     20      1
D9V5, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               29
  CLUS_3              1               32
  CLUS_4              0               22
  CLUS_5              0                8
  CLUS_6              1               20
  CLUS_7              0                1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PNPLA4 MUTATED        3      0      1      0      0      1      0
  PNPLA4 WILD-TYPE     39     26     11     24      8     22     12
D9V6, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              3               39
  CLUS_2              0               26
  CLUS_3              1               11
  CLUS_4              0               24
  CLUS_5              0                8
  CLUS_6              1               22
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA4 MUTATED        3      2      0
  PNPLA4 WILD-TYPE     47     54     41
D9V7, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              2               54
  CLUS_3              0               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA4 MUTATED        3      2      0
  PNPLA4 WILD-TYPE     65     36     41
D9V8, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              3               65
  CLUS_2              2               36
  CLUS_3              0               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA4 MUTATED        3      2      0
  PNPLA4 WILD-TYPE     64     34     44
D9V9, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              2               34
  CLUS_3              0               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PNPLA4 MUTATED        2      1      1      0      1      0
  PNPLA4 WILD-TYPE     31     34     18     27     18     14
D9V10, multiclass
        clus
vv       PNPLA4 MUTATED PNPLA4 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               34
  CLUS_3              1               18
  CLUS_4              0               27
  CLUS_5              1               18
  CLUS_6              0               14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = SERINC2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERINC2 MUTATED        1      1      2      0
  SERINC2 WILD-TYPE     46     31     52     14
D10V1, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               1                46
  CLUS_2               1                31
  CLUS_3               2                52
  CLUS_4               0                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERINC2 MUTATED        1      0      2      1
  SERINC2 WILD-TYPE     42     20     32     49
D10V2, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               1                42
  CLUS_2               0                20
  CLUS_3               2                32
  CLUS_4               1                49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERINC2 MUTATED        0      0      1      2      0
  SERINC2 WILD-TYPE     44      8      9     34     18
D10V3, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               0                44
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               2                34
  CLUS_5               0                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SERINC2 MUTATED        0      0      3
  SERINC2 WILD-TYPE     50     24     39
D10V4, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               0                50
  CLUS_2               0                24
  CLUS_3               3                39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SERINC2 MUTATED        1      0      2      1      0      0      0
  SERINC2 WILD-TYPE     32     29     31     21      8     21      1
D10V5, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                29
  CLUS_3               2                31
  CLUS_4               1                21
  CLUS_5               0                 8
  CLUS_6               0                21
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SERINC2 MUTATED        1      0      1      1      0      1      0
  SERINC2 WILD-TYPE     41     26     11     23      8     22     12
D10V6, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               1                41
  CLUS_2               0                26
  CLUS_3               1                11
  CLUS_4               1                23
  CLUS_5               0                 8
  CLUS_6               1                22
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SERINC2 MUTATED        1      2      1
  SERINC2 WILD-TYPE     49     54     40
D10V7, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               1                49
  CLUS_2               2                54
  CLUS_3               1                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SERINC2 MUTATED        1      2      1
  SERINC2 WILD-TYPE     67     36     40
D10V8, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               1                67
  CLUS_2               2                36
  CLUS_3               1                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SERINC2 MUTATED        1      1      2
  SERINC2 WILD-TYPE     66     35     42
D10V9, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               1                66
  CLUS_2               1                35
  CLUS_3               2                42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERINC2 MUTATED        1      0      2      1      0      0
  SERINC2 WILD-TYPE     32     35     17     26     19     14
D10V10, multiclass
        clus
vv       SERINC2 MUTATED SERINC2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                35
  CLUS_3               2                17
  CLUS_4               1                26
  CLUS_5               0                19
  CLUS_6               0                14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = RHPN2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHPN2 MUTATED        2      1      2      1
  RHPN2 WILD-TYPE     45     31     52     13
D11V1, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              31
  CLUS_3             2              52
  CLUS_4             1              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHPN2 MUTATED        1      1      1      3
  RHPN2 WILD-TYPE     42     19     33     47
D11V2, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             1              42
  CLUS_2             1              19
  CLUS_3             1              33
  CLUS_4             3              47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHPN2 MUTATED        3      0      1      1      1
  RHPN2 WILD-TYPE     41      8      9     35     17
D11V3, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1              35
  CLUS_5             1              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RHPN2 MUTATED        3      1      2
  RHPN2 WILD-TYPE     47     23     40
D11V4, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             1              23
  CLUS_3             2              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RHPN2 MUTATED        1      2      1      1      0      1      0
  RHPN2 WILD-TYPE     32     27     32     21      8     20      1
D11V5, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              27
  CLUS_3             1              32
  CLUS_4             1              21
  CLUS_5             0               8
  CLUS_6             1              20
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RHPN2 MUTATED        1      2      0      1      0      1      1
  RHPN2 WILD-TYPE     41     24     12     23      8     22     11
D11V6, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             2              24
  CLUS_3             0              12
  CLUS_4             1              23
  CLUS_5             0               8
  CLUS_6             1              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RHPN2 MUTATED        3      1      2
  RHPN2 WILD-TYPE     47     55     39
D11V7, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             1              55
  CLUS_3             2              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RHPN2 MUTATED        3      1      2
  RHPN2 WILD-TYPE     65     37     39
D11V8, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             3              65
  CLUS_2             1              37
  CLUS_3             2              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RHPN2 MUTATED        3      1      2
  RHPN2 WILD-TYPE     64     35     42
D11V9, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             1              35
  CLUS_3             2              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RHPN2 MUTATED        1      2      0      2      1      0
  RHPN2 WILD-TYPE     32     33     19     25     18     14
D11V10, multiclass
        clus
vv       RHPN2 MUTATED RHPN2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              33
  CLUS_3             0              19
  CLUS_4             2              25
  CLUS_5             1              18
  CLUS_6             0              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = RBM10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        1      2      1      1
  RBM10 WILD-TYPE     46     30     53     13
D12V1, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             2              30
  CLUS_3             1              53
  CLUS_4             1              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        1      2      0      2
  RBM10 WILD-TYPE     42     18     34     48
D12V2, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1              42
  CLUS_2             2              18
  CLUS_3             0              34
  CLUS_4             2              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM10 MUTATED        3      0      0      2      0
  RBM10 WILD-TYPE     41      8     10     34     18
D12V3, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             2              34
  CLUS_5             0              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        3      0      2
  RBM10 WILD-TYPE     47     24     40
D12V4, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             0              24
  CLUS_3             2              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM10 MUTATED        0      3      0      1      0      1      0
  RBM10 WILD-TYPE     33     26     33     21      8     20      1
D12V5, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              26
  CLUS_3             0              33
  CLUS_4             1              21
  CLUS_5             0               8
  CLUS_6             1              20
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM10 MUTATED        1      2      0      1      0      0      1
  RBM10 WILD-TYPE     41     24     12     23      8     23     11
D12V6, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             2              24
  CLUS_3             0              12
  CLUS_4             1              23
  CLUS_5             0               8
  CLUS_6             0              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        2      1      2
  RBM10 WILD-TYPE     48     55     39
D12V7, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             1              55
  CLUS_3             2              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        3      0      2
  RBM10 WILD-TYPE     65     38     39
D12V8, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              65
  CLUS_2             0              38
  CLUS_3             2              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        3      0      2
  RBM10 WILD-TYPE     64     36     42
D12V9, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              64
  CLUS_2             0              36
  CLUS_3             2              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBM10 MUTATED        0      3      0      2      0      0
  RBM10 WILD-TYPE     33     32     19     25     19     14
D12V10, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              32
  CLUS_3             0              19
  CLUS_4             2              25
  CLUS_5             0              19
  CLUS_6             0              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = HSF4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSF4 MUTATED        4      0      1      1
  HSF4 WILD-TYPE     43     32     53     13
D13V1, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             32
  CLUS_3            1             53
  CLUS_4            1             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSF4 MUTATED        4      1      1      0
  HSF4 WILD-TYPE     39     19     33     50
D13V2, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            4             39
  CLUS_2            1             19
  CLUS_3            1             33
  CLUS_4            0             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSF4 MUTATED        2      1      1      1      1
  HSF4 WILD-TYPE     42      7      9     35     17
D13V3, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            1             35
  CLUS_5            1             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF4 MUTATED        3      1      2
  HSF4 WILD-TYPE     47     23     40
D13V4, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            3             47
  CLUS_2            1             23
  CLUS_3            2             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HSF4 MUTATED        2      1      1      0      1      1      0
  HSF4 WILD-TYPE     31     28     32     22      7     20      1
D13V5, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             28
  CLUS_3            1             32
  CLUS_4            0             22
  CLUS_5            1              7
  CLUS_6            1             20
  CLUS_7            0              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HSF4 MUTATED        4      0      1      0      1      0      0
  HSF4 WILD-TYPE     38     26     11     24      7     23     12
D13V6, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            4             38
  CLUS_2            0             26
  CLUS_3            1             11
  CLUS_4            0             24
  CLUS_5            1              7
  CLUS_6            0             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF4 MUTATED        4      2      0
  HSF4 WILD-TYPE     46     54     41
D13V7, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            4             46
  CLUS_2            2             54
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF4 MUTATED        4      2      0
  HSF4 WILD-TYPE     64     36     41
D13V8, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            4             64
  CLUS_2            2             36
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF4 MUTATED        4      2      0
  HSF4 WILD-TYPE     63     34     44
D13V9, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            4             63
  CLUS_2            2             34
  CLUS_3            0             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HSF4 MUTATED        3      1      1      0      1      0
  HSF4 WILD-TYPE     30     34     18     27     18     14
D13V10, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            1             34
  CLUS_3            1             18
  CLUS_4            0             27
  CLUS_5            1             18
  CLUS_6            0             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = CDC27 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC27 MUTATED        1      3      0      2
  CDC27 WILD-TYPE     46     29     54     12
D14V1, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             3              29
  CLUS_3             0              54
  CLUS_4             2              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC27 MUTATED        2      2      1      1
  CDC27 WILD-TYPE     41     18     33     49
D14V2, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             2              41
  CLUS_2             2              18
  CLUS_3             1              33
  CLUS_4             1              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC27 MUTATED        4      0      1      0      0
  CDC27 WILD-TYPE     40      8      9     36     18
D14V3, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0              36
  CLUS_5             0              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        4      1      0
  CDC27 WILD-TYPE     46     23     42
D14V4, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             4              46
  CLUS_2             1              23
  CLUS_3             0              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDC27 MUTATED        1      4      0      0      1      0      0
  CDC27 WILD-TYPE     32     25     33     22      7     21      1
D14V5, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             4              25
  CLUS_3             0              33
  CLUS_4             0              22
  CLUS_5             1               7
  CLUS_6             0              21
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CDC27 MUTATED        1      4      0      0      1      0      0
  CDC27 WILD-TYPE     41     22     12     24      7     23     12
D14V6, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             4              22
  CLUS_3             0              12
  CLUS_4             0              24
  CLUS_5             1               7
  CLUS_6             0              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        3      3      0
  CDC27 WILD-TYPE     47     53     41
D14V7, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             3              53
  CLUS_3             0              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        5      1      0
  CDC27 WILD-TYPE     63     37     41
D14V8, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             5              63
  CLUS_2             1              37
  CLUS_3             0              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC27 MUTATED        5      1      0
  CDC27 WILD-TYPE     62     35     44
D14V9, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             5              62
  CLUS_2             1              35
  CLUS_3             0              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDC27 MUTATED        1      4      0      0      1      0
  CDC27 WILD-TYPE     32     31     19     27     18     14
D14V10, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             4              31
  CLUS_3             0              19
  CLUS_4             0              27
  CLUS_5             1              18
  CLUS_6             0              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = MLLT3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT3 MUTATED        3      0      1      0
  MLLT3 WILD-TYPE     44     32     53     14
D15V1, multiclass
        clus
vv       MLLT3 MUTATED MLLT3 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              32
  CLUS_3             1              53
  CLUS_4             0              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLLT3 MUTATED        1      0      2      1
  MLLT3 WILD-TYPE     42     20     32     49
D15V2, multiclass
        clus
vv       MLLT3 MUTATED MLLT3 WILD-TYPE
  CLUS_1             1              42
  CLUS_2             0              20
  CLUS_3             2              32
  CLUS_4             1              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLLT3 MUTATED        0      0      0      0      1
  MLLT3 WILD-TYPE     44      8     10     36     17
D15V3, multiclass
[1] "Remove cluster labels:" "MLLT3 MUTATED"         
clus
  MLLT3 MUTATED MLLT3 WILD-TYPE 
              1             115 
     TCGA-2G-AAEW      TCGA-2G-AAEX      TCGA-2G-AAF1      TCGA-2G-AAF4 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAF6      TCGA-2G-AAF8      TCGA-2G-AAFG      TCGA-2G-AAFI 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAFJ      TCGA-2G-AAFL      TCGA-2G-AAFM      TCGA-2G-AAFN 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAFY      TCGA-2G-AAFZ      TCGA-2G-AAG0      TCGA-2G-AAG3 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAG5      TCGA-2G-AAG6      TCGA-2G-AAG7      TCGA-2G-AAG8 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAG9      TCGA-2G-AAGC      TCGA-2G-AAGF      TCGA-2G-AAGG 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAGI      TCGA-2G-AAGJ      TCGA-2G-AAGK      TCGA-2G-AAGM 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAGN      TCGA-2G-AAGO      TCGA-2G-AAGP      TCGA-2G-AAGS 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAGT      TCGA-2G-AAGV      TCGA-2G-AAGW      TCGA-2G-AAGX 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAGY      TCGA-2G-AAGZ      TCGA-2G-AAH0      TCGA-2G-AAH3 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAH4      TCGA-2G-AAH8      TCGA-2G-AAHA      TCGA-2G-AAHC 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAHG      TCGA-2G-AAHL      TCGA-2G-AAHP      TCGA-2G-AAHT 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAKG      TCGA-2G-AAKL      TCGA-2G-AAKM      TCGA-2G-AAKO 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAL5      TCGA-2G-AAL7      TCGA-2G-AALF      TCGA-2G-AALG 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AALN      TCGA-2G-AALO      TCGA-2G-AALP      TCGA-2G-AALQ 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AALS      TCGA-2G-AALT      TCGA-2G-AALW      TCGA-2G-AALX 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AALZ      TCGA-2G-AAM2      TCGA-2G-AAM3      TCGA-2G-AAM4 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2X-A9D5      TCGA-2X-A9D6      TCGA-4K-AA1G      TCGA-4K-AA1H 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-4K-AA1I      TCGA-S6-A8JW      TCGA-S6-A8JX      TCGA-S6-A8JY 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-SN-A6IS      TCGA-SN-A84X      TCGA-SO-A8JP      TCGA-VF-A8A8 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-VF-A8AA      TCGA-VF-A8AE      TCGA-W4-A7U2      TCGA-W4-A7U4 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-X3-A8G4      TCGA-XE-A8H1      TCGA-XE-A8H5      TCGA-XE-A9SE 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-XE-AANI      TCGA-XE-AANJ      TCGA-XE-AANR      TCGA-XE-AANV 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-XE-AAO3      TCGA-XE-AAO4      TCGA-XE-AAO6      TCGA-XE-AAOB 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-XE-AAOC      TCGA-XE-AAOD      TCGA-XE-AAOF      TCGA-XE-AAOJ 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-XE-AAOL      TCGA-XY-A89B      TCGA-XY-A9T9      TCGA-YU-A90P 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-YU-A90Q      TCGA-YU-A90S      TCGA-YU-A90W      TCGA-YU-A90Y 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-YU-A912      TCGA-YU-A94I      TCGA-YU-AA61      TCGA-ZM-AA05 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-ZM-AA0B      TCGA-ZM-AA0D      TCGA-ZM-AA0E 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT3 MUTATED        0      0      1
  MLLT3 WILD-TYPE     50     24     41
D15V4, multiclass
[1] "Remove cluster labels:" "MLLT3 MUTATED"         
clus
  MLLT3 MUTATED MLLT3 WILD-TYPE 
              1             115 
     TCGA-2G-AAEW      TCGA-2G-AAEX      TCGA-2G-AAF1      TCGA-2G-AAF4 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAF6      TCGA-2G-AAF8      TCGA-2G-AAFG      TCGA-2G-AAFI 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAFJ      TCGA-2G-AAFL      TCGA-2G-AAFM      TCGA-2G-AAFN 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAFY      TCGA-2G-AAFZ      TCGA-2G-AAG0      TCGA-2G-AAG3 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAG5      TCGA-2G-AAG6      TCGA-2G-AAG7      TCGA-2G-AAG8 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAG9      TCGA-2G-AAGC      TCGA-2G-AAGF      TCGA-2G-AAGG 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAGI      TCGA-2G-AAGJ      TCGA-2G-AAGK      TCGA-2G-AAGM 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAGN      TCGA-2G-AAGO      TCGA-2G-AAGP      TCGA-2G-AAGS 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAGT      TCGA-2G-AAGV      TCGA-2G-AAGW      TCGA-2G-AAGX 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAGY      TCGA-2G-AAGZ      TCGA-2G-AAH0      TCGA-2G-AAH3 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAH4      TCGA-2G-AAH8      TCGA-2G-AAHA      TCGA-2G-AAHC 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAHG      TCGA-2G-AAHL      TCGA-2G-AAHP      TCGA-2G-AAHT 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAKG      TCGA-2G-AAKL      TCGA-2G-AAKM      TCGA-2G-AAKO 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AAL5      TCGA-2G-AAL7      TCGA-2G-AALF      TCGA-2G-AALG 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AALN      TCGA-2G-AALO      TCGA-2G-AALP      TCGA-2G-AALQ 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AALS      TCGA-2G-AALT      TCGA-2G-AALW      TCGA-2G-AALX 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2G-AALZ      TCGA-2G-AAM2      TCGA-2G-AAM3      TCGA-2G-AAM4 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-2X-A9D5      TCGA-2X-A9D6      TCGA-4K-AA1G      TCGA-4K-AA1H 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-4K-AA1I      TCGA-S6-A8JW      TCGA-S6-A8JX      TCGA-S6-A8JY 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-SN-A6IS      TCGA-SN-A84X      TCGA-SO-A8JP      TCGA-VF-A8A8 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-VF-A8AA      TCGA-VF-A8AE      TCGA-W4-A7U2      TCGA-W4-A7U4 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-X3-A8G4      TCGA-XE-A8H1      TCGA-XE-A8H5      TCGA-XE-A9SE 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-XE-AANI      TCGA-XE-AANJ      TCGA-XE-AANR      TCGA-XE-AANV 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-XE-AAO3      TCGA-XE-AAO4      TCGA-XE-AAO6      TCGA-XE-AAOB 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-XE-AAOC      TCGA-XE-AAOD      TCGA-XE-AAOF      TCGA-XE-AAOJ 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-XE-AAOL      TCGA-XY-A89B      TCGA-XY-A9T9      TCGA-YU-A90P 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-YU-A90Q      TCGA-YU-A90S      TCGA-YU-A90W      TCGA-YU-A90Y 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-YU-A912      TCGA-YU-A94I      TCGA-YU-AA61      TCGA-ZM-AA05 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
     TCGA-ZM-AA0B      TCGA-ZM-AA0D      TCGA-ZM-AA0E 
"MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" "MLLT3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLLT3 MUTATED        1      0      2      0      0      1      0
  MLLT3 WILD-TYPE     32     29     31     22      8     20      1
D15V5, multiclass
        clus
vv       MLLT3 MUTATED MLLT3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              29
  CLUS_3             2              31
  CLUS_4             0              22
  CLUS_5             0               8
  CLUS_6             1              20
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MLLT3 MUTATED        1      0      0      0      1      1      1
  MLLT3 WILD-TYPE     41     26     12     24      7     22     11
D15V6, multiclass
        clus
vv       MLLT3 MUTATED MLLT3 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             0              26
  CLUS_3             0              12
  CLUS_4             0              24
  CLUS_5             1               7
  CLUS_6             1              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT3 MUTATED        1      2      1
  MLLT3 WILD-TYPE     49     54     40
D15V7, multiclass
        clus
vv       MLLT3 MUTATED MLLT3 WILD-TYPE
  CLUS_1             1              49
  CLUS_2             2              54
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT3 MUTATED        1      2      1
  MLLT3 WILD-TYPE     67     36     40
D15V8, multiclass
        clus
vv       MLLT3 MUTATED MLLT3 WILD-TYPE
  CLUS_1             1              67
  CLUS_2             2              36
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MLLT3 MUTATED        1      2      1
  MLLT3 WILD-TYPE     66     34     43
D15V9, multiclass
        clus
vv       MLLT3 MUTATED MLLT3 WILD-TYPE
  CLUS_1             1              66
  CLUS_2             2              34
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLLT3 MUTATED        1      0      1      1      1      0
  MLLT3 WILD-TYPE     32     35     18     26     18     14
D15V10, multiclass
        clus
vv       MLLT3 MUTATED MLLT3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              35
  CLUS_3             1              18
  CLUS_4             1              26
  CLUS_5             1              18
  CLUS_6             0              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = ERC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERC1 MUTATED        2      1      2      2
  ERC1 WILD-TYPE     45     31     52     12
D16V1, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            1             31
  CLUS_3            2             52
  CLUS_4            2             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERC1 MUTATED        2      0      2      3
  ERC1 WILD-TYPE     41     20     32     47
D16V2, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            2             41
  CLUS_2            0             20
  CLUS_3            2             32
  CLUS_4            3             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERC1 MUTATED        2      0      1      2      1
  ERC1 WILD-TYPE     42      8      9     34     17
D16V3, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            0              8
  CLUS_3            1              9
  CLUS_4            2             34
  CLUS_5            1             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERC1 MUTATED        2      1      3
  ERC1 WILD-TYPE     48     23     39
D16V4, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            2             48
  CLUS_2            1             23
  CLUS_3            3             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERC1 MUTATED        2      1      1      1      1      1      0
  ERC1 WILD-TYPE     31     28     32     21      7     20      1
D16V5, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             28
  CLUS_3            1             32
  CLUS_4            1             21
  CLUS_5            1              7
  CLUS_6            1             20
  CLUS_7            0              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ERC1 MUTATED        3      0      0      1      1      1      1
  ERC1 WILD-TYPE     39     26     12     23      7     22     11
D16V6, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            3             39
  CLUS_2            0             26
  CLUS_3            0             12
  CLUS_4            1             23
  CLUS_5            1              7
  CLUS_6            1             22
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERC1 MUTATED        2      3      2
  ERC1 WILD-TYPE     48     53     39
D16V7, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            2             48
  CLUS_2            3             53
  CLUS_3            2             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERC1 MUTATED        3      2      2
  ERC1 WILD-TYPE     65     36     39
D16V8, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            3             65
  CLUS_2            2             36
  CLUS_3            2             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERC1 MUTATED        3      2      2
  ERC1 WILD-TYPE     64     34     42
D16V9, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            3             64
  CLUS_2            2             34
  CLUS_3            2             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERC1 MUTATED        1      2      0      2      2      0
  ERC1 WILD-TYPE     32     33     19     25     17     14
D16V10, multiclass
        clus
vv       ERC1 MUTATED ERC1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             33
  CLUS_3            0             19
  CLUS_4            2             25
  CLUS_5            2             17
  CLUS_6            0             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = MEF2A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEF2A MUTATED        1      1      1      0
  MEF2A WILD-TYPE     46     31     53     14
D17V1, multiclass
        clus
vv       MEF2A MUTATED MEF2A WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              31
  CLUS_3             1              53
  CLUS_4             0              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEF2A MUTATED        2      0      0      1
  MEF2A WILD-TYPE     41     20     34     49
D17V2, multiclass
        clus
vv       MEF2A MUTATED MEF2A WILD-TYPE
  CLUS_1             2              41
  CLUS_2             0              20
  CLUS_3             0              34
  CLUS_4             1              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEF2A MUTATED        0      1      0      1      0
  MEF2A WILD-TYPE     44      7     10     35     18
D17V3, multiclass
[1] "Remove cluster labels:" "MEF2A MUTATED"         
clus
  MEF2A MUTATED MEF2A WILD-TYPE 
              2             114 
     TCGA-2G-AAEW      TCGA-2G-AAEX      TCGA-2G-AAF1      TCGA-2G-AAF4 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAF6      TCGA-2G-AAF8      TCGA-2G-AAFG      TCGA-2G-AAFI 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAFJ      TCGA-2G-AAFL      TCGA-2G-AAFM      TCGA-2G-AAFN 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAFZ      TCGA-2G-AAG0      TCGA-2G-AAG3      TCGA-2G-AAG5 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAG6      TCGA-2G-AAG7      TCGA-2G-AAG8      TCGA-2G-AAG9 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGC      TCGA-2G-AAGF      TCGA-2G-AAGG      TCGA-2G-AAGI 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGJ      TCGA-2G-AAGK      TCGA-2G-AAGM      TCGA-2G-AAGN 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGO      TCGA-2G-AAGP      TCGA-2G-AAGS      TCGA-2G-AAGT 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGV      TCGA-2G-AAGW      TCGA-2G-AAGX      TCGA-2G-AAGY 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGZ      TCGA-2G-AAH0      TCGA-2G-AAH3      TCGA-2G-AAH4 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAH8      TCGA-2G-AAHA      TCGA-2G-AAHC      TCGA-2G-AAHG 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAHL      TCGA-2G-AAHP      TCGA-2G-AAHT      TCGA-2G-AAKG 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAKH      TCGA-2G-AAKL      TCGA-2G-AAKM      TCGA-2G-AAKO 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAL5      TCGA-2G-AAL7      TCGA-2G-AALF      TCGA-2G-AALG 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AALO      TCGA-2G-AALP      TCGA-2G-AALQ      TCGA-2G-AALS 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AALT      TCGA-2G-AALW      TCGA-2G-AALX      TCGA-2G-AALZ 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAM2      TCGA-2G-AAM3      TCGA-2G-AAM4      TCGA-2X-A9D5 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2X-A9D6      TCGA-4K-AA1G      TCGA-4K-AA1H      TCGA-4K-AA1I 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-S6-A8JW      TCGA-S6-A8JX      TCGA-S6-A8JY      TCGA-SN-A6IS 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-SN-A84X      TCGA-SO-A8JP      TCGA-VF-A8A8      TCGA-VF-A8AA 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-VF-A8AE      TCGA-W4-A7U2      TCGA-W4-A7U4      TCGA-X3-A8G4 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XE-A8H1      TCGA-XE-A8H5      TCGA-XE-A9SE      TCGA-XE-AANI 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XE-AANJ      TCGA-XE-AANR      TCGA-XE-AANV      TCGA-XE-AAO3 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XE-AAO4      TCGA-XE-AAO6      TCGA-XE-AAOB      TCGA-XE-AAOC 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XE-AAOD      TCGA-XE-AAOF      TCGA-XE-AAOJ      TCGA-XE-AAOL 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XY-A89B      TCGA-XY-A9T9      TCGA-YU-A90P      TCGA-YU-A90Q 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-YU-A90S      TCGA-YU-A90W      TCGA-YU-A90Y      TCGA-YU-A912 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-YU-A94I      TCGA-YU-AA61      TCGA-ZM-AA05      TCGA-ZM-AA0B 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-ZM-AA0D      TCGA-ZM-AA0E 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEF2A MUTATED        0      0      2
  MEF2A WILD-TYPE     50     24     40
D17V4, multiclass
[1] "Remove cluster labels:" "MEF2A MUTATED"         
clus
  MEF2A MUTATED MEF2A WILD-TYPE 
              2             114 
     TCGA-2G-AAEW      TCGA-2G-AAEX      TCGA-2G-AAF1      TCGA-2G-AAF4 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAF6      TCGA-2G-AAF8      TCGA-2G-AAFG      TCGA-2G-AAFI 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAFJ      TCGA-2G-AAFL      TCGA-2G-AAFM      TCGA-2G-AAFN 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAFZ      TCGA-2G-AAG0      TCGA-2G-AAG3      TCGA-2G-AAG5 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAG6      TCGA-2G-AAG7      TCGA-2G-AAG8      TCGA-2G-AAG9 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGC      TCGA-2G-AAGF      TCGA-2G-AAGG      TCGA-2G-AAGI 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGJ      TCGA-2G-AAGK      TCGA-2G-AAGM      TCGA-2G-AAGN 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGO      TCGA-2G-AAGP      TCGA-2G-AAGS      TCGA-2G-AAGT 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGV      TCGA-2G-AAGW      TCGA-2G-AAGX      TCGA-2G-AAGY 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAGZ      TCGA-2G-AAH0      TCGA-2G-AAH3      TCGA-2G-AAH4 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAH8      TCGA-2G-AAHA      TCGA-2G-AAHC      TCGA-2G-AAHG 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAHL      TCGA-2G-AAHP      TCGA-2G-AAHT      TCGA-2G-AAKG 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAKH      TCGA-2G-AAKL      TCGA-2G-AAKM      TCGA-2G-AAKO 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAL5      TCGA-2G-AAL7      TCGA-2G-AALF      TCGA-2G-AALG 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AALO      TCGA-2G-AALP      TCGA-2G-AALQ      TCGA-2G-AALS 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AALT      TCGA-2G-AALW      TCGA-2G-AALX      TCGA-2G-AALZ 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2G-AAM2      TCGA-2G-AAM3      TCGA-2G-AAM4      TCGA-2X-A9D5 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-2X-A9D6      TCGA-4K-AA1G      TCGA-4K-AA1H      TCGA-4K-AA1I 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-S6-A8JW      TCGA-S6-A8JX      TCGA-S6-A8JY      TCGA-SN-A6IS 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-SN-A84X      TCGA-SO-A8JP      TCGA-VF-A8A8      TCGA-VF-A8AA 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-VF-A8AE      TCGA-W4-A7U2      TCGA-W4-A7U4      TCGA-X3-A8G4 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XE-A8H1      TCGA-XE-A8H5      TCGA-XE-A9SE      TCGA-XE-AANI 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XE-AANJ      TCGA-XE-AANR      TCGA-XE-AANV      TCGA-XE-AAO3 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XE-AAO4      TCGA-XE-AAO6      TCGA-XE-AAOB      TCGA-XE-AAOC 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XE-AAOD      TCGA-XE-AAOF      TCGA-XE-AAOJ      TCGA-XE-AAOL 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-XY-A89B      TCGA-XY-A9T9      TCGA-YU-A90P      TCGA-YU-A90Q 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-YU-A90S      TCGA-YU-A90W      TCGA-YU-A90Y      TCGA-YU-A912 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-YU-A94I      TCGA-YU-AA61      TCGA-ZM-AA05      TCGA-ZM-AA0B 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
     TCGA-ZM-AA0D      TCGA-ZM-AA0E 
"MEF2A WILD-TYPE" "MEF2A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MEF2A MUTATED        0      1      1      0      0      1      0
  MEF2A WILD-TYPE     33     28     32     22      8     20      1
D17V5, multiclass
        clus
vv       MEF2A MUTATED MEF2A WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              28
  CLUS_3             1              32
  CLUS_4             0              22
  CLUS_5             0               8
  CLUS_6             1              20
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MEF2A MUTATED        0      1      1      0      0      1      0
  MEF2A WILD-TYPE     42     25     11     24      8     22     12
D17V6, multiclass
        clus
vv       MEF2A MUTATED MEF2A WILD-TYPE
  CLUS_1             0              42
  CLUS_2             1              25
  CLUS_3             1              11
  CLUS_4             0              24
  CLUS_5             0               8
  CLUS_6             1              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEF2A MUTATED        1      1      1
  MEF2A WILD-TYPE     49     55     40
D17V7, multiclass
        clus
vv       MEF2A MUTATED MEF2A WILD-TYPE
  CLUS_1             1              49
  CLUS_2             1              55
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEF2A MUTATED        1      1      1
  MEF2A WILD-TYPE     67     37     40
D17V8, multiclass
        clus
vv       MEF2A MUTATED MEF2A WILD-TYPE
  CLUS_1             1              67
  CLUS_2             1              37
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEF2A MUTATED        1      1      1
  MEF2A WILD-TYPE     66     35     43
D17V9, multiclass
        clus
vv       MEF2A MUTATED MEF2A WILD-TYPE
  CLUS_1             1              66
  CLUS_2             1              35
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MEF2A MUTATED        0      1      0      0      1      1
  MEF2A WILD-TYPE     33     34     19     27     18     13
D17V10, multiclass
        clus
vv       MEF2A MUTATED MEF2A WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              34
  CLUS_3             0              19
  CLUS_4             0              27
  CLUS_5             1              18
  CLUS_6             1              13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = SP8 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP8 MUTATED        0      0      5      1
  SP8 WILD-TYPE     47     32     49     13
D18V1, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            47
  CLUS_2           0            32
  CLUS_3           5            49
  CLUS_4           1            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP8 MUTATED        0      1      2      3
  SP8 WILD-TYPE     43     19     32     47
D18V2, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            43
  CLUS_2           1            19
  CLUS_3           2            32
  CLUS_4           3            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SP8 MUTATED        0      0      1      4      0
  SP8 WILD-TYPE     44      8      9     32     18
D18V3, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            44
  CLUS_2           0             8
  CLUS_3           1             9
  CLUS_4           4            32
  CLUS_5           0            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP8 MUTATED        0      3      2
  SP8 WILD-TYPE     50     21     40
D18V4, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            50
  CLUS_2           3            21
  CLUS_3           2            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SP8 MUTATED        0      0      2      2      0      2      0
  SP8 WILD-TYPE     33     29     31     20      8     19      1
D18V5, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            33
  CLUS_2           0            29
  CLUS_3           2            31
  CLUS_4           2            20
  CLUS_5           0             8
  CLUS_6           2            19
  CLUS_7           0             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SP8 MUTATED        0      0      1      4      1      0      0
  SP8 WILD-TYPE     42     26     11     20      7     23     12
D18V6, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            42
  CLUS_2           0            26
  CLUS_3           1            11
  CLUS_4           4            20
  CLUS_5           1             7
  CLUS_6           0            23
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP8 MUTATED        0      2      4
  SP8 WILD-TYPE     50     54     37
D18V7, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            50
  CLUS_2           2            54
  CLUS_3           4            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP8 MUTATED        0      2      4
  SP8 WILD-TYPE     68     36     37
D18V8, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            68
  CLUS_2           2            36
  CLUS_3           4            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP8 MUTATED        0      2      4
  SP8 WILD-TYPE     67     34     40
D18V9, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            67
  CLUS_2           2            34
  CLUS_3           4            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SP8 MUTATED        0      0      1      3      1      1
  SP8 WILD-TYPE     33     35     18     24     18     13
D18V10, multiclass
        clus
vv       SP8 MUTATED SP8 WILD-TYPE
  CLUS_1           0            33
  CLUS_2           0            35
  CLUS_3           1            18
  CLUS_4           3            24
  CLUS_5           1            18
  CLUS_6           1            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = NAT10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAT10 MUTATED        0      2      2      0
  NAT10 WILD-TYPE     47     30     52     14
D19V1, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             2              30
  CLUS_3             2              52
  CLUS_4             0              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAT10 MUTATED        1      1      1      1
  NAT10 WILD-TYPE     42     19     33     49
D19V2, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             1              42
  CLUS_2             1              19
  CLUS_3             1              33
  CLUS_4             1              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAT10 MUTATED        1      0      0      1      1
  NAT10 WILD-TYPE     43      8     10     35     17
D19V3, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             1              35
  CLUS_5             1              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAT10 MUTATED        1      0      2
  NAT10 WILD-TYPE     49     24     40
D19V4, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             1              49
  CLUS_2             0              24
  CLUS_3             2              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAT10 MUTATED        0      2      1      0      0      1      0
  NAT10 WILD-TYPE     33     27     32     22      8     20      1
D19V5, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              27
  CLUS_3             1              32
  CLUS_4             0              22
  CLUS_5             0               8
  CLUS_6             1              20
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NAT10 MUTATED        0      2      0      0      0      1      1
  NAT10 WILD-TYPE     42     24     12     24      8     22     11
D19V6, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             0              42
  CLUS_2             2              24
  CLUS_3             0              12
  CLUS_4             0              24
  CLUS_5             0               8
  CLUS_6             1              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAT10 MUTATED        2      1      1
  NAT10 WILD-TYPE     48     55     40
D19V7, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             1              55
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAT10 MUTATED        2      1      1
  NAT10 WILD-TYPE     66     37     40
D19V8, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             1              37
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAT10 MUTATED        2      1      1
  NAT10 WILD-TYPE     65     35     43
D19V9, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              35
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAT10 MUTATED        0      2      1      1      0      0
  NAT10 WILD-TYPE     33     33     18     26     19     14
D19V10, multiclass
        clus
vv       NAT10 MUTATED NAT10 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              33
  CLUS_3             1              18
  CLUS_4             1              26
  CLUS_5             0              19
  CLUS_6             0              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = SPIN2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPIN2A MUTATED        0      1      2      0
  SPIN2A WILD-TYPE     47     31     52     14
D20V1, multiclass
        clus
vv       SPIN2A MUTATED SPIN2A WILD-TYPE
  CLUS_1              0               47
  CLUS_2              1               31
  CLUS_3              2               52
  CLUS_4              0               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPIN2A MUTATED        0      1      1      1
  SPIN2A WILD-TYPE     43     19     33     49
D20V2, multiclass
        clus
vv       SPIN2A MUTATED SPIN2A WILD-TYPE
  CLUS_1              0               43
  CLUS_2              1               19
  CLUS_3              1               33
  CLUS_4              1               49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPIN2A MUTATED        1      0      0      1      0
  SPIN2A WILD-TYPE     43      8     10     35     18
D20V3, multiclass
[1] "Remove cluster labels:" "SPIN2A MUTATED"        
clus
  SPIN2A MUTATED SPIN2A WILD-TYPE 
               2              114 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGM       TCGA-2G-AAGN 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS       TCGA-2G-AAGT 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGX       TCGA-2G-AAGY 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3       TCGA-2G-AAH4 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC       TCGA-2G-AAHG 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-4K-AA1I       TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8       TCGA-VF-A8AA 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4       TCGA-X3-A8G4 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE       TCGA-XE-AANI 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV       TCGA-XE-AAO3 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB       TCGA-XE-AAOC 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ       TCGA-XE-AAOL 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P       TCGA-YU-A90Q 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y       TCGA-YU-A912 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05       TCGA-ZM-AA0B 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPIN2A MUTATED        1      0      1
  SPIN2A WILD-TYPE     49     24     41
D20V4, multiclass
[1] "Remove cluster labels:" "SPIN2A MUTATED"        
clus
  SPIN2A MUTATED SPIN2A WILD-TYPE 
               2              114 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGM       TCGA-2G-AAGN 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS       TCGA-2G-AAGT 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGX       TCGA-2G-AAGY 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3       TCGA-2G-AAH4 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC       TCGA-2G-AAHG 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-4K-AA1I       TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8       TCGA-VF-A8AA 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4       TCGA-X3-A8G4 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE       TCGA-XE-AANI 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV       TCGA-XE-AAO3 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB       TCGA-XE-AAOC 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ       TCGA-XE-AAOL 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P       TCGA-YU-A90Q 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y       TCGA-YU-A912 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05       TCGA-ZM-AA0B 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
      TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"SPIN2A WILD-TYPE" "SPIN2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPIN2A MUTATED        0      1      0      1      0      1      0
  SPIN2A WILD-TYPE     33     28     33     21      8     20      1
D20V5, multiclass
        clus
vv       SPIN2A MUTATED SPIN2A WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               28
  CLUS_3              0               33
  CLUS_4              1               21
  CLUS_5              0                8
  CLUS_6              1               20
  CLUS_7              0                1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SPIN2A MUTATED        0      1      1      1      0      0      0
  SPIN2A WILD-TYPE     42     25     11     23      8     23     12
D20V6, multiclass
        clus
vv       SPIN2A MUTATED SPIN2A WILD-TYPE
  CLUS_1              0               42
  CLUS_2              1               25
  CLUS_3              1               11
  CLUS_4              1               23
  CLUS_5              0                8
  CLUS_6              0               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPIN2A MUTATED        1      1      1
  SPIN2A WILD-TYPE     49     55     40
D20V7, multiclass
        clus
vv       SPIN2A MUTATED SPIN2A WILD-TYPE
  CLUS_1              1               49
  CLUS_2              1               55
  CLUS_3              1               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPIN2A MUTATED        1      1      1
  SPIN2A WILD-TYPE     67     37     40
D20V8, multiclass
        clus
vv       SPIN2A MUTATED SPIN2A WILD-TYPE
  CLUS_1              1               67
  CLUS_2              1               37
  CLUS_3              1               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPIN2A MUTATED        1      1      1
  SPIN2A WILD-TYPE     66     35     43
D20V9, multiclass
        clus
vv       SPIN2A MUTATED SPIN2A WILD-TYPE
  CLUS_1              1               66
  CLUS_2              1               35
  CLUS_3              1               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPIN2A MUTATED        0      1      1      1      0      0
  SPIN2A WILD-TYPE     33     34     18     26     19     14
D20V10, multiclass
        clus
vv       SPIN2A MUTATED SPIN2A WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               34
  CLUS_3              1               18
  CLUS_4              1               26
  CLUS_5              0               19
  CLUS_6              0               14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEK MUTATED        0      3      1      1
  DEK WILD-TYPE     47     29     53     13
D21V1, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           0            47
  CLUS_2           3            29
  CLUS_3           1            53
  CLUS_4           1            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEK MUTATED        0      3      1      1
  DEK WILD-TYPE     43     17     33     49
D21V2, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           0            43
  CLUS_2           3            17
  CLUS_3           1            33
  CLUS_4           1            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEK MUTATED        3      1      0      1      0
  DEK WILD-TYPE     41      7     10     35     18
D21V3, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           3            41
  CLUS_2           1             7
  CLUS_3           0            10
  CLUS_4           1            35
  CLUS_5           0            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        4      0      1
  DEK WILD-TYPE     46     24     41
D21V4, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           4            46
  CLUS_2           0            24
  CLUS_3           1            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEK MUTATED        0      4      1      0      0      0      0
  DEK WILD-TYPE     33     25     32     22      8     21      1
D21V5, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           0            33
  CLUS_2           4            25
  CLUS_3           1            32
  CLUS_4           0            22
  CLUS_5           0             8
  CLUS_6           0            21
  CLUS_7           0             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEK MUTATED        0      4      1      0      0      0      0
  DEK WILD-TYPE     42     22     11     24      8     23     12
D21V6, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           0            42
  CLUS_2           4            22
  CLUS_3           1            11
  CLUS_4           0            24
  CLUS_5           0             8
  CLUS_6           0            23
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        3      2      0
  DEK WILD-TYPE     47     54     41
D21V7, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           3            47
  CLUS_2           2            54
  CLUS_3           0            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        4      1      0
  DEK WILD-TYPE     64     37     41
D21V8, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           4            64
  CLUS_2           1            37
  CLUS_3           0            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        4      0      1
  DEK WILD-TYPE     63     36     43
D21V9, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           4            63
  CLUS_2           0            36
  CLUS_3           1            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEK MUTATED        0      4      1      0      0      0
  DEK WILD-TYPE     33     31     18     27     19     14
D21V10, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           0            33
  CLUS_2           4            31
  CLUS_3           1            18
  CLUS_4           0            27
  CLUS_5           0            19
  CLUS_6           0            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = FANK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANK1 MUTATED        0      2      1      1
  FANK1 WILD-TYPE     47     30     53     13
D22V1, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             2              30
  CLUS_3             1              53
  CLUS_4             1              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANK1 MUTATED        1      0      2      1
  FANK1 WILD-TYPE     42     20     32     49
D22V2, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             1              42
  CLUS_2             0              20
  CLUS_3             2              32
  CLUS_4             1              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FANK1 MUTATED        1      0      0      0      2
  FANK1 WILD-TYPE     43      8     10     36     16
D22V3, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             0              36
  CLUS_5             2              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANK1 MUTATED        1      0      2
  FANK1 WILD-TYPE     49     24     40
D22V4, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             1              49
  CLUS_2             0              24
  CLUS_3             2              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FANK1 MUTATED        0      2      2      0      0      0      0
  FANK1 WILD-TYPE     33     27     31     22      8     21      1
D22V5, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              27
  CLUS_3             2              31
  CLUS_4             0              22
  CLUS_5             0               8
  CLUS_6             0              21
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FANK1 MUTATED        1      1      0      0      0      2      0
  FANK1 WILD-TYPE     41     25     12     24      8     21     12
D22V6, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             1              25
  CLUS_3             0              12
  CLUS_4             0              24
  CLUS_5             0               8
  CLUS_6             2              21
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANK1 MUTATED        1      3      0
  FANK1 WILD-TYPE     49     53     41
D22V7, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             1              49
  CLUS_2             3              53
  CLUS_3             0              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANK1 MUTATED        2      2      0
  FANK1 WILD-TYPE     66     36     41
D22V8, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             2              36
  CLUS_3             0              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANK1 MUTATED        2      2      0
  FANK1 WILD-TYPE     65     34     44
D22V9, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             2              34
  CLUS_3             0              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FANK1 MUTATED        0      2      1      0      1      0
  FANK1 WILD-TYPE     33     33     18     27     18     14
D22V10, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              33
  CLUS_3             1              18
  CLUS_4             0              27
  CLUS_5             1              18
  CLUS_6             0              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = ANKRD11 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD11 MUTATED        3      2      2      0
  ANKRD11 WILD-TYPE     44     30     52     14
D23V1, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               2                30
  CLUS_3               2                52
  CLUS_4               0                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD11 MUTATED        3      2      0      2
  ANKRD11 WILD-TYPE     40     18     34     48
D23V2, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               3                40
  CLUS_2               2                18
  CLUS_3               0                34
  CLUS_4               2                48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD11 MUTATED        3      1      0      2      0
  ANKRD11 WILD-TYPE     41      7     10     34     18
D23V3, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               3                41
  CLUS_2               1                 7
  CLUS_3               0                10
  CLUS_4               2                34
  CLUS_5               0                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD11 MUTATED        4      1      1
  ANKRD11 WILD-TYPE     46     23     41
D23V4, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               4                46
  CLUS_2               1                23
  CLUS_3               1                41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD11 MUTATED        2      2      0      2      0      0      1
  ANKRD11 WILD-TYPE     31     27     33     20      8     21      0
D23V5, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               2                27
  CLUS_3               0                33
  CLUS_4               2                20
  CLUS_5               0                 8
  CLUS_6               0                21
  CLUS_7               1                 0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ANKRD11 MUTATED        3      2      0      1      0      0      1
  ANKRD11 WILD-TYPE     39     24     12     23      8     23     11
D23V6, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               3                39
  CLUS_2               2                24
  CLUS_3               0                12
  CLUS_4               1                23
  CLUS_5               0                 8
  CLUS_6               0                23
  CLUS_7               1                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD11 MUTATED        4      1      2
  ANKRD11 WILD-TYPE     46     55     39
D23V7, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               4                46
  CLUS_2               1                55
  CLUS_3               2                39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD11 MUTATED        5      0      2
  ANKRD11 WILD-TYPE     63     38     39
D23V8, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               5                63
  CLUS_2               0                38
  CLUS_3               2                39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD11 MUTATED        5      0      2
  ANKRD11 WILD-TYPE     62     36     42
D23V9, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               5                62
  CLUS_2               0                36
  CLUS_3               2                42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANKRD11 MUTATED        3      2      0      2      0      0
  ANKRD11 WILD-TYPE     30     33     19     25     19     14
D23V10, multiclass
        clus
vv       ANKRD11 MUTATED ANKRD11 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               2                33
  CLUS_3               0                19
  CLUS_4               2                25
  CLUS_5               0                19
  CLUS_6               0                14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = C22ORF43 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C22ORF43 MUTATED        0      2      0      1
  C22ORF43 WILD-TYPE     47     30     54     13
D24V1, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                0                 47
  CLUS_2                2                 30
  CLUS_3                0                 54
  CLUS_4                1                 13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C22ORF43 MUTATED        0      1      1      1
  C22ORF43 WILD-TYPE     43     19     33     49
D24V2, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                0                 43
  CLUS_2                1                 19
  CLUS_3                1                 33
  CLUS_4                1                 49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C22ORF43 MUTATED        1      0      2      0      0
  C22ORF43 WILD-TYPE     43      8      8     36     18
D24V3, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                1                 43
  CLUS_2                0                  8
  CLUS_3                2                  8
  CLUS_4                0                 36
  CLUS_5                0                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C22ORF43 MUTATED        1      1      1
  C22ORF43 WILD-TYPE     49     23     41
D24V4, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                1                 49
  CLUS_2                1                 23
  CLUS_3                1                 41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C22ORF43 MUTATED        0      1      1      1      0      0      0
  C22ORF43 WILD-TYPE     33     28     32     21      8     21      1
D24V5, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                1                 28
  CLUS_3                1                 32
  CLUS_4                1                 21
  CLUS_5                0                  8
  CLUS_6                0                 21
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C22ORF43 MUTATED        0      1      0      1      0      1      0
  C22ORF43 WILD-TYPE     42     25     12     23      8     22     12
D24V6, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                0                 42
  CLUS_2                1                 25
  CLUS_3                0                 12
  CLUS_4                1                 23
  CLUS_5                0                  8
  CLUS_6                1                 22
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C22ORF43 MUTATED        1      1      1
  C22ORF43 WILD-TYPE     49     55     40
D24V7, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                1                 49
  CLUS_2                1                 55
  CLUS_3                1                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C22ORF43 MUTATED        1      1      1
  C22ORF43 WILD-TYPE     67     37     40
D24V8, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                1                 67
  CLUS_2                1                 37
  CLUS_3                1                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C22ORF43 MUTATED        1      1      1
  C22ORF43 WILD-TYPE     66     35     43
D24V9, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                1                 66
  CLUS_2                1                 35
  CLUS_3                1                 43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C22ORF43 MUTATED        1      0      0      1      1      0
  C22ORF43 WILD-TYPE     32     35     19     26     18     14
D24V10, multiclass
        clus
vv       C22ORF43 MUTATED C22ORF43 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                0                 35
  CLUS_3                0                 19
  CLUS_4                1                 26
  CLUS_5                1                 18
  CLUS_6                0                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = ATXN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN3 MUTATED        2      0      1      0
  ATXN3 WILD-TYPE     45     32     53     14
D25V1, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              32
  CLUS_3             1              53
  CLUS_4             0              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN3 MUTATED        1      0      1      1
  ATXN3 WILD-TYPE     42     20     33     49
D25V2, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             1              42
  CLUS_2             0              20
  CLUS_3             1              33
  CLUS_4             1              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATXN3 MUTATED        0      0      1      1      1
  ATXN3 WILD-TYPE     44      8      9     35     17
D25V3, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1              35
  CLUS_5             1              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATXN3 MUTATED        0      2      1
  ATXN3 WILD-TYPE     50     22     41
D25V4, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              50
  CLUS_2             2              22
  CLUS_3             1              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATXN3 MUTATED        0      0      2      1      0      0      0
  ATXN3 WILD-TYPE     33     29     31     21      8     21      1
D25V5, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              29
  CLUS_3             2              31
  CLUS_4             1              21
  CLUS_5             0               8
  CLUS_6             0              21
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ATXN3 MUTATED        0      0      0      1      1      1      0
  ATXN3 WILD-TYPE     42     26     12     23      7     22     12
D25V6, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              42
  CLUS_2             0              26
  CLUS_3             0              12
  CLUS_4             1              23
  CLUS_5             1               7
  CLUS_6             1              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATXN3 MUTATED        0      2      1
  ATXN3 WILD-TYPE     50     54     40
D25V7, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              50
  CLUS_2             2              54
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATXN3 MUTATED        0      2      1
  ATXN3 WILD-TYPE     68     36     40
D25V8, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              68
  CLUS_2             2              36
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATXN3 MUTATED        0      2      1
  ATXN3 WILD-TYPE     67     34     43
D25V9, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             2              34
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATXN3 MUTATED        0      0      1      1      1      0
  ATXN3 WILD-TYPE     33     35     18     26     18     14
D25V10, multiclass
        clus
vv       ATXN3 MUTATED ATXN3 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              35
  CLUS_3             1              18
  CLUS_4             1              26
  CLUS_5             1              18
  CLUS_6             0              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = TPTE2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        2      2      1      0
  TPTE2 WILD-TYPE     45     30     53     14
D26V1, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             2              30
  CLUS_3             1              53
  CLUS_4             0              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        2      0      0      3
  TPTE2 WILD-TYPE     41     20     34     47
D26V2, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              41
  CLUS_2             0              20
  CLUS_3             0              34
  CLUS_4             3              47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE2 MUTATED        2      0      0      1      0
  TPTE2 WILD-TYPE     42      8     10     35     18
D26V3, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             1              35
  CLUS_5             0              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        2      0      1
  TPTE2 WILD-TYPE     48     24     41
D26V4, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             0              24
  CLUS_3             1              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TPTE2 MUTATED        3      1      0      1      0      0      0
  TPTE2 WILD-TYPE     30     28     33     21      8     21      1
D26V5, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              28
  CLUS_3             0              33
  CLUS_4             1              21
  CLUS_5             0               8
  CLUS_6             0              21
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TPTE2 MUTATED        3      1      0      0      0      0      1
  TPTE2 WILD-TYPE     39     25     12     24      8     23     11
D26V6, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3              39
  CLUS_2             1              25
  CLUS_3             0              12
  CLUS_4             0              24
  CLUS_5             0               8
  CLUS_6             0              23
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        4      0      1
  TPTE2 WILD-TYPE     46     56     40
D26V7, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              46
  CLUS_2             0              56
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        4      0      1
  TPTE2 WILD-TYPE     64     38     40
D26V8, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              64
  CLUS_2             0              38
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        4      0      1
  TPTE2 WILD-TYPE     63     36     43
D26V9, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              63
  CLUS_2             0              36
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TPTE2 MUTATED        2      2      0      1      0      0
  TPTE2 WILD-TYPE     31     33     19     26     19     14
D26V10, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              33
  CLUS_3             0              19
  CLUS_4             1              26
  CLUS_5             0              19
  CLUS_6             0              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = KRTAP10-10 MUTATION ANALYSIS
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP10-10 MUTATED        2      1      2      0
  KRTAP10-10 WILD-TYPE     45     31     52     14
D27V1, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  2                   45
  CLUS_2                  1                   31
  CLUS_3                  2                   52
  CLUS_4                  0                   14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP10-10 MUTATED        3      0      0      2
  KRTAP10-10 WILD-TYPE     40     20     34     48
D27V2, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  3                   40
  CLUS_2                  0                   20
  CLUS_3                  0                   34
  CLUS_4                  2                   48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP10-10 MUTATED        3      0      0      1      0
  KRTAP10-10 WILD-TYPE     41      8     10     35     18
D27V3, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  3                   41
  CLUS_2                  0                    8
  CLUS_3                  0                   10
  CLUS_4                  1                   35
  CLUS_5                  0                   18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  KRTAP10-10 MUTATED        3      0      1
  KRTAP10-10 WILD-TYPE     47     24     41
D27V4, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  3                   47
  CLUS_2                  0                   24
  CLUS_3                  1                   41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRTAP10-10 MUTATED        2      1      0      2      0      0      0
  KRTAP10-10 WILD-TYPE     31     28     33     20      8     21      1
D27V5, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  2                   31
  CLUS_2                  1                   28
  CLUS_3                  0                   33
  CLUS_4                  2                   20
  CLUS_5                  0                    8
  CLUS_6                  0                   21
  CLUS_7                  0                    1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRTAP10-10 MUTATED        2      1      0      1      0      0      1
  KRTAP10-10 WILD-TYPE     40     25     12     23      8     23     11
D27V6, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  2                   40
  CLUS_2                  1                   25
  CLUS_3                  0                   12
  CLUS_4                  1                   23
  CLUS_5                  0                    8
  CLUS_6                  0                   23
  CLUS_7                  1                   11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  KRTAP10-10 MUTATED        3      0      2
  KRTAP10-10 WILD-TYPE     47     56     39
D27V7, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  3                   47
  CLUS_2                  0                   56
  CLUS_3                  2                   39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  KRTAP10-10 MUTATED        3      0      2
  KRTAP10-10 WILD-TYPE     65     38     39
D27V8, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  3                   65
  CLUS_2                  0                   38
  CLUS_3                  2                   39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  KRTAP10-10 MUTATED        3      0      2
  KRTAP10-10 WILD-TYPE     64     36     42
D27V9, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  3                   64
  CLUS_2                  0                   36
  CLUS_3                  2                   42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRTAP10-10 MUTATED        2      1      0      0      0      2
  KRTAP10-10 WILD-TYPE     31     34     19     27     19     12
D27V10, multiclass
        clus
vv       KRTAP10-10 MUTATED KRTAP10-10 WILD-TYPE
  CLUS_1                  2                   31
  CLUS_2                  1                   34
  CLUS_3                  0                   19
  CLUS_4                  0                   27
  CLUS_5                  0                   19
  CLUS_6                  2                   12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = ZNF680 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF680 MUTATED        1      1      0      1
  ZNF680 WILD-TYPE     46     31     54     13
D28V1, multiclass
        clus
vv       ZNF680 MUTATED ZNF680 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               31
  CLUS_3              0               54
  CLUS_4              1               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF680 MUTATED        1      1      0      1
  ZNF680 WILD-TYPE     42     19     34     49
D28V2, multiclass
        clus
vv       ZNF680 MUTATED ZNF680 WILD-TYPE
  CLUS_1              1               42
  CLUS_2              1               19
  CLUS_3              0               34
  CLUS_4              1               49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF680 MUTATED        3      0      0      0      0
  ZNF680 WILD-TYPE     41      8     10     36     18
D28V3, multiclass
        clus
vv       ZNF680 MUTATED ZNF680 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0               36
  CLUS_5              0               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF680 MUTATED        3      0      0
  ZNF680 WILD-TYPE     47     24     42
D28V4, multiclass
        clus
vv       ZNF680 MUTATED ZNF680 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              0               24
  CLUS_3              0               42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF680 MUTATED        2      1      0      0      0      0      0
  ZNF680 WILD-TYPE     31     28     33     22      8     21      1
D28V5, multiclass
        clus
vv       ZNF680 MUTATED ZNF680 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               28
  CLUS_3              0               33
  CLUS_4              0               22
  CLUS_5              0                8
  CLUS_6              0               21
  CLUS_7              0                1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF680 MUTATED        2      1      0      0      0      0      0
  ZNF680 WILD-TYPE     40     25     12     24      8     23     12
D28V6, multiclass
        clus
vv       ZNF680 MUTATED ZNF680 WILD-TYPE
  CLUS_1              2               40
  CLUS_2              1               25
  CLUS_3              0               12
  CLUS_4              0               24
  CLUS_5              0                8
  CLUS_6              0               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF680 MUTATED        3      0      0
  ZNF680 WILD-TYPE     47     56     41
D28V7, multiclass
        clus
vv       ZNF680 MUTATED ZNF680 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              0               56
  CLUS_3              0               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF680 MUTATED        3      0      0
  ZNF680 WILD-TYPE     65     38     41
D28V8, multiclass
        clus
vv       ZNF680 MUTATED ZNF680 WILD-TYPE
  CLUS_1              3               65
  CLUS_2              0               38
  CLUS_3              0               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF680 MUTATED        3      0      0
  ZNF680 WILD-TYPE     64     36     44
D28V9, multiclass
        clus
vv       ZNF680 MUTATED ZNF680 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              0               36
  CLUS_3              0               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF680 MUTATED        2      1      0      0      0      0
  ZNF680 WILD-TYPE     31     34     19     27     19     14
D28V10, multiclass
        clus
vv       ZNF680 MUTATED ZNF680 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               34
  CLUS_3              0               19
  CLUS_4              0               27
  CLUS_5              0               19
  CLUS_6              0               14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = RAC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAC1 MUTATED        1      2      1      0
  RAC1 WILD-TYPE     46     30     53     14
D29V1, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            2             30
  CLUS_3            1             53
  CLUS_4            0             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAC1 MUTATED        2      0      1      1
  RAC1 WILD-TYPE     41     20     33     49
D29V2, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2             41
  CLUS_2            0             20
  CLUS_3            1             33
  CLUS_4            1             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAC1 MUTATED        2      0      0      0      1
  RAC1 WILD-TYPE     42      8     10     36     17
D29V3, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            0             36
  CLUS_5            1             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        2      0      1
  RAC1 WILD-TYPE     48     24     41
D29V4, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2             48
  CLUS_2            0             24
  CLUS_3            1             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAC1 MUTATED        2      0      1      0      1      0      0
  RAC1 WILD-TYPE     31     29     32     22      7     21      1
D29V5, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             29
  CLUS_3            1             32
  CLUS_4            0             22
  CLUS_5            1              7
  CLUS_6            0             21
  CLUS_7            0              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RAC1 MUTATED        3      0      0      0      0      1      0
  RAC1 WILD-TYPE     39     26     12     24      8     22     12
D29V6, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3             39
  CLUS_2            0             26
  CLUS_3            0             12
  CLUS_4            0             24
  CLUS_5            0              8
  CLUS_6            1             22
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        3      1      0
  RAC1 WILD-TYPE     47     55     41
D29V7, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3             47
  CLUS_2            1             55
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        3      1      0
  RAC1 WILD-TYPE     65     37     41
D29V8, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3             65
  CLUS_2            1             37
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAC1 MUTATED        3      1      0
  RAC1 WILD-TYPE     64     35     44
D29V9, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3             64
  CLUS_2            1             35
  CLUS_3            0             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAC1 MUTATED        3      0      0      0      1      0
  RAC1 WILD-TYPE     30     35     19     27     18     14
D29V10, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            0             35
  CLUS_3            0             19
  CLUS_4            0             27
  CLUS_5            1             18
  CLUS_6            0             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = NBPF10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF10 MUTATED        5      1      1      0
  NBPF10 WILD-TYPE     42     31     53     14
D30V1, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              5               42
  CLUS_2              1               31
  CLUS_3              1               53
  CLUS_4              0               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBPF10 MUTATED        3      0      2      2
  NBPF10 WILD-TYPE     40     20     32     48
D30V2, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              3               40
  CLUS_2              0               20
  CLUS_3              2               32
  CLUS_4              2               48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBPF10 MUTATED        2      0      1      1      1
  NBPF10 WILD-TYPE     42      8      9     35     17
D30V3, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              1               35
  CLUS_5              1               17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF10 MUTATED        2      1      2
  NBPF10 WILD-TYPE     48     23     40
D30V4, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              2               48
  CLUS_2              1               23
  CLUS_3              2               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NBPF10 MUTATED        1      1      2      1      2      0      0
  NBPF10 WILD-TYPE     32     28     31     21      6     21      1
D30V5, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               28
  CLUS_3              2               31
  CLUS_4              1               21
  CLUS_5              2                6
  CLUS_6              0               21
  CLUS_7              0                1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NBPF10 MUTATED        1      1      1      1      2      1      0
  NBPF10 WILD-TYPE     41     25     11     23      6     22     12
D30V6, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              1               41
  CLUS_2              1               25
  CLUS_3              1               11
  CLUS_4              1               23
  CLUS_5              2                6
  CLUS_6              1               22
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF10 MUTATED        1      4      2
  NBPF10 WILD-TYPE     49     52     39
D30V7, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              1               49
  CLUS_2              4               52
  CLUS_3              2               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF10 MUTATED        2      3      2
  NBPF10 WILD-TYPE     66     35     39
D30V8, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              2               66
  CLUS_2              3               35
  CLUS_3              2               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NBPF10 MUTATED        2      3      2
  NBPF10 WILD-TYPE     65     33     42
D30V9, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              3               33
  CLUS_3              2               42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NBPF10 MUTATED        1      1      0      1      3      1
  NBPF10 WILD-TYPE     32     34     19     26     16     13
D30V10, multiclass
        clus
vv       NBPF10 MUTATED NBPF10 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               34
  CLUS_3              0               19
  CLUS_4              1               26
  CLUS_5              3               16
  CLUS_6              1               13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = FAM8A1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM8A1 MUTATED        2      1      0      0
  FAM8A1 WILD-TYPE     45     31     54     14
D31V1, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               31
  CLUS_3              0               54
  CLUS_4              0               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM8A1 MUTATED        2      0      0      1
  FAM8A1 WILD-TYPE     41     20     34     49
D31V2, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              2               41
  CLUS_2              0               20
  CLUS_3              0               34
  CLUS_4              1               49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM8A1 MUTATED        1      0      0      0      0
  FAM8A1 WILD-TYPE     43      8     10     36     18
D31V3, multiclass
[1] "Remove cluster labels:" "FAM8A1 MUTATED"        
clus
  FAM8A1 MUTATED FAM8A1 WILD-TYPE 
               1              115 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAGN       TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAGT       TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGX 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAGY       TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAH4       TCGA-2G-AAH8       TCGA-2G-AAHC       TCGA-2G-AAHG 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-4K-AA1I       TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-SN-A6IS       TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-VF-A8AA       TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-X3-A8G4       TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-XE-AANI       TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-XE-AAO3       TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-XE-AAOC       TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-XE-AAOL       TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-YU-A90Q       TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-YU-A912       TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-ZM-AA0B       TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        1      0      0
  FAM8A1 WILD-TYPE     49     24     42
D31V4, multiclass
[1] "Remove cluster labels:" "FAM8A1 MUTATED"        
clus
  FAM8A1 MUTATED FAM8A1 WILD-TYPE 
               1              115 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAGN       TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAGT       TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGX 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAGY       TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAH4       TCGA-2G-AAH8       TCGA-2G-AAHC       TCGA-2G-AAHG 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-4K-AA1I       TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-SN-A6IS       TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-VF-A8AA       TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-X3-A8G4       TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-XE-AANI       TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-XE-AAO3       TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-XE-AAOC       TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-XE-AAOL       TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-YU-A90Q       TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-YU-A912       TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
      TCGA-ZM-AA0B       TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" "FAM8A1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM8A1 MUTATED        2      0      0      0      1      0      0
  FAM8A1 WILD-TYPE     31     29     33     22      7     21      1
D31V5, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               29
  CLUS_3              0               33
  CLUS_4              0               22
  CLUS_5              1                7
  CLUS_6              0               21
  CLUS_7              0                1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM8A1 MUTATED        3      0      0      0      0      0      0
  FAM8A1 WILD-TYPE     39     26     12     24      8     23     12
D31V6, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              3               39
  CLUS_2              0               26
  CLUS_3              0               12
  CLUS_4              0               24
  CLUS_5              0                8
  CLUS_6              0               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        3      0      0
  FAM8A1 WILD-TYPE     47     56     41
D31V7, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              0               56
  CLUS_3              0               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        3      0      0
  FAM8A1 WILD-TYPE     65     38     41
D31V8, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              3               65
  CLUS_2              0               38
  CLUS_3              0               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM8A1 MUTATED        3      0      0
  FAM8A1 WILD-TYPE     64     36     44
D31V9, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              0               36
  CLUS_3              0               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM8A1 MUTATED        3      0      0      0      0      0
  FAM8A1 WILD-TYPE     30     35     19     27     19     14
D31V10, multiclass
        clus
vv       FAM8A1 MUTATED FAM8A1 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               35
  CLUS_3              0               19
  CLUS_4              0               27
  CLUS_5              0               19
  CLUS_6              0               14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = PSMD11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMD11 MUTATED        1      3      0      0
  PSMD11 WILD-TYPE     46     29     54     14
D32V1, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              3               29
  CLUS_3              0               54
  CLUS_4              0               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSMD11 MUTATED        3      1      0      0
  PSMD11 WILD-TYPE     40     19     34     50
D32V2, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              3               40
  CLUS_2              1               19
  CLUS_3              0               34
  CLUS_4              0               50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSMD11 MUTATED        2      1      0      0      0
  PSMD11 WILD-TYPE     42      7     10     36     18
D32V3, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4              0               36
  CLUS_5              0               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PSMD11 MUTATED        3      0      0
  PSMD11 WILD-TYPE     47     24     42
D32V4, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              0               24
  CLUS_3              0               42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PSMD11 MUTATED        2      2      0      0      0      0      0
  PSMD11 WILD-TYPE     31     27     33     22      8     21      1
D32V5, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               27
  CLUS_3              0               33
  CLUS_4              0               22
  CLUS_5              0                8
  CLUS_6              0               21
  CLUS_7              0                1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PSMD11 MUTATED        2      2      0      0      0      0      0
  PSMD11 WILD-TYPE     40     24     12     24      8     23     12
D32V6, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              2               40
  CLUS_2              2               24
  CLUS_3              0               12
  CLUS_4              0               24
  CLUS_5              0                8
  CLUS_6              0               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PSMD11 MUTATED        2      2      0
  PSMD11 WILD-TYPE     48     54     41
D32V7, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              2               48
  CLUS_2              2               54
  CLUS_3              0               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PSMD11 MUTATED        4      0      0
  PSMD11 WILD-TYPE     64     38     41
D32V8, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              4               64
  CLUS_2              0               38
  CLUS_3              0               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PSMD11 MUTATED        3      1      0
  PSMD11 WILD-TYPE     64     35     44
D32V9, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              1               35
  CLUS_3              0               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PSMD11 MUTATED        2      2      0      0      0      0
  PSMD11 WILD-TYPE     31     33     19     27     19     14
D32V10, multiclass
        clus
vv       PSMD11 MUTATED PSMD11 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               33
  CLUS_3              0               19
  CLUS_4              0               27
  CLUS_5              0               19
  CLUS_6              0               14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = KRTAP1-1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP1-1 MUTATED        1      1      1      0
  KRTAP1-1 WILD-TYPE     46     31     53     14
D33V1, multiclass
        clus
vv       KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                1                 31
  CLUS_3                1                 53
  CLUS_4                0                 14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP1-1 MUTATED        2      0      1      0
  KRTAP1-1 WILD-TYPE     41     20     33     50
D33V2, multiclass
        clus
vv       KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE
  CLUS_1                2                 41
  CLUS_2                0                 20
  CLUS_3                1                 33
  CLUS_4                0                 50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP1-1 MUTATED        1      0      1      0      0
  KRTAP1-1 WILD-TYPE     43      8      9     36     18
D33V3, multiclass
[1] "Remove cluster labels:" "KRTAP1-1 MUTATED"      
clus
  KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE 
                 2                114 
        TCGA-2G-AAEW         TCGA-2G-AAEX         TCGA-2G-AAF1 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAF4         TCGA-2G-AAF6         TCGA-2G-AAF8 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAFG         TCGA-2G-AAFJ         TCGA-2G-AAFL 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAFM         TCGA-2G-AAFN         TCGA-2G-AAFY 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAFZ         TCGA-2G-AAG0         TCGA-2G-AAG3 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAG5         TCGA-2G-AAG6         TCGA-2G-AAG7 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAG8         TCGA-2G-AAG9         TCGA-2G-AAGC 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGF         TCGA-2G-AAGG         TCGA-2G-AAGI 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGJ         TCGA-2G-AAGK         TCGA-2G-AAGM 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGN         TCGA-2G-AAGO         TCGA-2G-AAGP 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGS         TCGA-2G-AAGT         TCGA-2G-AAGV 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGW         TCGA-2G-AAGX         TCGA-2G-AAGY 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGZ         TCGA-2G-AAH0         TCGA-2G-AAH3 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAH4         TCGA-2G-AAH8         TCGA-2G-AAHA 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAHC         TCGA-2G-AAHG         TCGA-2G-AAHL 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAHP         TCGA-2G-AAHT         TCGA-2G-AAKG 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAKH         TCGA-2G-AAKL         TCGA-2G-AAKM 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAKO         TCGA-2G-AAL5         TCGA-2G-AAL7 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AALF         TCGA-2G-AALG         TCGA-2G-AALN 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AALO         TCGA-2G-AALP         TCGA-2G-AALQ 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AALS         TCGA-2G-AALT         TCGA-2G-AALW 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AALX         TCGA-2G-AALZ         TCGA-2G-AAM2 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAM3         TCGA-2G-AAM4         TCGA-2X-A9D5 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2X-A9D6         TCGA-4K-AA1G         TCGA-4K-AA1H 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-4K-AA1I         TCGA-S6-A8JW         TCGA-S6-A8JX 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-S6-A8JY         TCGA-SN-A6IS         TCGA-SN-A84X 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-SO-A8JP         TCGA-VF-A8A8         TCGA-VF-A8AA 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-VF-A8AE         TCGA-W4-A7U2         TCGA-W4-A7U4 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-X3-A8G4         TCGA-XE-A8H1         TCGA-XE-A8H5 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-A9SE         TCGA-XE-AANI         TCGA-XE-AANJ 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-AANR         TCGA-XE-AANV         TCGA-XE-AAO3 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-AAO4         TCGA-XE-AAO6         TCGA-XE-AAOB 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-AAOC         TCGA-XE-AAOD         TCGA-XE-AAOJ 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-AAOL         TCGA-XY-A89B         TCGA-XY-A9T9 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-YU-A90P         TCGA-YU-A90Q         TCGA-YU-A90S 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-YU-A90W         TCGA-YU-A90Y         TCGA-YU-A912 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-YU-A94I         TCGA-YU-AA61         TCGA-ZM-AA05 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-ZM-AA0B         TCGA-ZM-AA0D         TCGA-ZM-AA0E 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP1-1 MUTATED        1      1      0
  KRTAP1-1 WILD-TYPE     49     23     42
D33V4, multiclass
[1] "Remove cluster labels:" "KRTAP1-1 MUTATED"      
clus
  KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE 
                 2                114 
        TCGA-2G-AAEW         TCGA-2G-AAEX         TCGA-2G-AAF1 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAF4         TCGA-2G-AAF6         TCGA-2G-AAF8 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAFG         TCGA-2G-AAFJ         TCGA-2G-AAFL 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAFM         TCGA-2G-AAFN         TCGA-2G-AAFY 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAFZ         TCGA-2G-AAG0         TCGA-2G-AAG3 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAG5         TCGA-2G-AAG6         TCGA-2G-AAG7 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAG8         TCGA-2G-AAG9         TCGA-2G-AAGC 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGF         TCGA-2G-AAGG         TCGA-2G-AAGI 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGJ         TCGA-2G-AAGK         TCGA-2G-AAGM 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGN         TCGA-2G-AAGO         TCGA-2G-AAGP 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGS         TCGA-2G-AAGT         TCGA-2G-AAGV 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGW         TCGA-2G-AAGX         TCGA-2G-AAGY 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAGZ         TCGA-2G-AAH0         TCGA-2G-AAH3 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAH4         TCGA-2G-AAH8         TCGA-2G-AAHA 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAHC         TCGA-2G-AAHG         TCGA-2G-AAHL 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAHP         TCGA-2G-AAHT         TCGA-2G-AAKG 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAKH         TCGA-2G-AAKL         TCGA-2G-AAKM 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAKO         TCGA-2G-AAL5         TCGA-2G-AAL7 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AALF         TCGA-2G-AALG         TCGA-2G-AALN 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AALO         TCGA-2G-AALP         TCGA-2G-AALQ 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AALS         TCGA-2G-AALT         TCGA-2G-AALW 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AALX         TCGA-2G-AALZ         TCGA-2G-AAM2 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2G-AAM3         TCGA-2G-AAM4         TCGA-2X-A9D5 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-2X-A9D6         TCGA-4K-AA1G         TCGA-4K-AA1H 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-4K-AA1I         TCGA-S6-A8JW         TCGA-S6-A8JX 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-S6-A8JY         TCGA-SN-A6IS         TCGA-SN-A84X 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-SO-A8JP         TCGA-VF-A8A8         TCGA-VF-A8AA 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-VF-A8AE         TCGA-W4-A7U2         TCGA-W4-A7U4 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-X3-A8G4         TCGA-XE-A8H1         TCGA-XE-A8H5 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-A9SE         TCGA-XE-AANI         TCGA-XE-AANJ 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-AANR         TCGA-XE-AANV         TCGA-XE-AAO3 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-AAO4         TCGA-XE-AAO6         TCGA-XE-AAOB 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-AAOC         TCGA-XE-AAOD         TCGA-XE-AAOJ 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-XE-AAOL         TCGA-XY-A89B         TCGA-XY-A9T9 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-YU-A90P         TCGA-YU-A90Q         TCGA-YU-A90S 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-YU-A90W         TCGA-YU-A90Y         TCGA-YU-A912 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-YU-A94I         TCGA-YU-AA61         TCGA-ZM-AA05 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
        TCGA-ZM-AA0B         TCGA-ZM-AA0D         TCGA-ZM-AA0E 
"KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" "KRTAP1-1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRTAP1-1 MUTATED        1      1      1      0      0      0      0
  KRTAP1-1 WILD-TYPE     32     28     32     22      8     21      1
D33V5, multiclass
        clus
vv       KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 28
  CLUS_3                1                 32
  CLUS_4                0                 22
  CLUS_5                0                  8
  CLUS_6                0                 21
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KRTAP1-1 MUTATED        2      0      1      0      0      0      0
  KRTAP1-1 WILD-TYPE     40     26     11     24      8     23     12
D33V6, multiclass
        clus
vv       KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE
  CLUS_1                2                 40
  CLUS_2                0                 26
  CLUS_3                1                 11
  CLUS_4                0                 24
  CLUS_5                0                  8
  CLUS_6                0                 23
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP1-1 MUTATED        1      2      0
  KRTAP1-1 WILD-TYPE     49     54     41
D33V7, multiclass
        clus
vv       KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE
  CLUS_1                1                 49
  CLUS_2                2                 54
  CLUS_3                0                 41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP1-1 MUTATED        2      1      0
  KRTAP1-1 WILD-TYPE     66     37     41
D33V8, multiclass
        clus
vv       KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE
  CLUS_1                2                 66
  CLUS_2                1                 37
  CLUS_3                0                 41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP1-1 MUTATED        2      1      0
  KRTAP1-1 WILD-TYPE     65     35     44
D33V9, multiclass
        clus
vv       KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE
  CLUS_1                2                 65
  CLUS_2                1                 35
  CLUS_3                0                 44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRTAP1-1 MUTATED        0      2      1      0      0      0
  KRTAP1-1 WILD-TYPE     33     33     18     27     19     14
D33V10, multiclass
        clus
vv       KRTAP1-1 MUTATED KRTAP1-1 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                2                 33
  CLUS_3                1                 18
  CLUS_4                0                 27
  CLUS_5                0                 19
  CLUS_6                0                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = OPLAH MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPLAH MUTATED        2      2      0      0
  OPLAH WILD-TYPE     45     30     54     14
D34V1, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              45
  CLUS_2             2              30
  CLUS_3             0              54
  CLUS_4             0              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPLAH MUTATED        3      0      0      1
  OPLAH WILD-TYPE     40     20     34     49
D34V2, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             3              40
  CLUS_2             0              20
  CLUS_3             0              34
  CLUS_4             1              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPLAH MUTATED        1      0      1      1      0
  OPLAH WILD-TYPE     43      8      9     35     18
D34V3, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             1              43
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             1              35
  CLUS_5             0              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED        1      1      1
  OPLAH WILD-TYPE     49     23     41
D34V4, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             1              49
  CLUS_2             1              23
  CLUS_3             1              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OPLAH MUTATED        1      1      1      1      0      0      0
  OPLAH WILD-TYPE     32     28     32     21      8     21      1
D34V5, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              28
  CLUS_3             1              32
  CLUS_4             1              21
  CLUS_5             0               8
  CLUS_6             0              21
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  OPLAH MUTATED        1      1      1      0      1      0      0
  OPLAH WILD-TYPE     41     25     11     24      7     23     12
D34V6, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             1              41
  CLUS_2             1              25
  CLUS_3             1              11
  CLUS_4             0              24
  CLUS_5             1               7
  CLUS_6             0              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED        2      2      0
  OPLAH WILD-TYPE     48     54     41
D34V7, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              48
  CLUS_2             2              54
  CLUS_3             0              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED        2      2      0
  OPLAH WILD-TYPE     66     36     41
D34V8, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              66
  CLUS_2             2              36
  CLUS_3             0              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED        2      1      1
  OPLAH WILD-TYPE     65     35     43
D34V9, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              35
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OPLAH MUTATED        1      1      1      0      1      0
  OPLAH WILD-TYPE     32     34     18     27     18     14
D34V10, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              34
  CLUS_3             1              18
  CLUS_4             0              27
  CLUS_5             1              18
  CLUS_6             0              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = FAM101B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM101B MUTATED        1      1      2      0
  FAM101B WILD-TYPE     46     31     52     14
D35V1, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               1                46
  CLUS_2               1                31
  CLUS_3               2                52
  CLUS_4               0                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM101B MUTATED        1      0      1      2
  FAM101B WILD-TYPE     42     20     33     48
D35V2, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               1                42
  CLUS_2               0                20
  CLUS_3               1                33
  CLUS_4               2                48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM101B MUTATED        2      0      0      1      0
  FAM101B WILD-TYPE     42      8     10     35     18
D35V3, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               2                42
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               1                35
  CLUS_5               0                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM101B MUTATED        2      0      1
  FAM101B WILD-TYPE     48     24     41
D35V4, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               2                48
  CLUS_2               0                24
  CLUS_3               1                41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM101B MUTATED        0      2      1      1      0      0      0
  FAM101B WILD-TYPE     33     27     32     21      8     21      1
D35V5, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               0                33
  CLUS_2               2                27
  CLUS_3               1                32
  CLUS_4               1                21
  CLUS_5               0                 8
  CLUS_6               0                21
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM101B MUTATED        0      2      0      1      0      1      0
  FAM101B WILD-TYPE     42     24     12     23      8     22     12
D35V6, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               0                42
  CLUS_2               2                24
  CLUS_3               0                12
  CLUS_4               1                23
  CLUS_5               0                 8
  CLUS_6               1                22
  CLUS_7               0                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM101B MUTATED        1      2      1
  FAM101B WILD-TYPE     49     54     40
D35V7, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               1                49
  CLUS_2               2                54
  CLUS_3               1                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM101B MUTATED        2      1      1
  FAM101B WILD-TYPE     66     37     40
D35V8, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               2                66
  CLUS_2               1                37
  CLUS_3               1                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM101B MUTATED        2      1      1
  FAM101B WILD-TYPE     65     35     43
D35V9, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               2                65
  CLUS_2               1                35
  CLUS_3               1                43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM101B MUTATED        1      1      1      1      0      0
  FAM101B WILD-TYPE     32     34     18     26     19     14
D35V10, multiclass
        clus
vv       FAM101B MUTATED FAM101B WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                34
  CLUS_3               1                18
  CLUS_4               1                26
  CLUS_5               0                19
  CLUS_6               0                14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = MUC2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC2 MUTATED        4      4      5      3
  MUC2 WILD-TYPE     43     28     49     11
D36V1, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            4             28
  CLUS_3            5             49
  CLUS_4            3             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC2 MUTATED        4      2      3      7
  MUC2 WILD-TYPE     39     18     31     43
D36V2, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            4             39
  CLUS_2            2             18
  CLUS_3            3             31
  CLUS_4            7             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUC2 MUTATED        4      0      0      6      1
  MUC2 WILD-TYPE     40      8     10     30     17
D36V3, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            4             40
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            6             30
  CLUS_5            1             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC2 MUTATED        4      4      3
  MUC2 WILD-TYPE     46     20     39
D36V4, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            4             46
  CLUS_2            4             20
  CLUS_3            3             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MUC2 MUTATED        2      3      3      3      1      3      1
  MUC2 WILD-TYPE     31     26     30     19      7     18      0
D36V5, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            3             26
  CLUS_3            3             30
  CLUS_4            3             19
  CLUS_5            1              7
  CLUS_6            3             18
  CLUS_7            1              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MUC2 MUTATED        4      3      1      3      1      2      2
  MUC2 WILD-TYPE     38     23     11     21      7     21     10
D36V6, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            4             38
  CLUS_2            3             23
  CLUS_3            1             11
  CLUS_4            3             21
  CLUS_5            1              7
  CLUS_6            2             21
  CLUS_7            2             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC2 MUTATED        7      4      5
  MUC2 WILD-TYPE     43     52     36
D36V7, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            7             43
  CLUS_2            4             52
  CLUS_3            5             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC2 MUTATED        7      4      5
  MUC2 WILD-TYPE     61     34     36
D36V8, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            7             61
  CLUS_2            4             34
  CLUS_3            5             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC2 MUTATED        7      3      6
  MUC2 WILD-TYPE     60     33     38
D36V9, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            7             60
  CLUS_2            3             33
  CLUS_3            6             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MUC2 MUTATED        4      3      1      5      3      0
  MUC2 WILD-TYPE     29     32     18     22     16     14
D36V10, multiclass
        clus
vv       MUC2 MUTATED MUC2 WILD-TYPE
  CLUS_1            4             29
  CLUS_2            3             32
  CLUS_3            1             18
  CLUS_4            5             22
  CLUS_5            3             16
  CLUS_6            0             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = HTT MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTT MUTATED        1      1      1      0
  HTT WILD-TYPE     46     31     53     14
D37V1, multiclass
        clus
vv       HTT MUTATED HTT WILD-TYPE
  CLUS_1           1            46
  CLUS_2           1            31
  CLUS_3           1            53
  CLUS_4           0            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTT MUTATED        1      1      1      0
  HTT WILD-TYPE     42     19     33     50
D37V2, multiclass
        clus
vv       HTT MUTATED HTT WILD-TYPE
  CLUS_1           1            42
  CLUS_2           1            19
  CLUS_3           1            33
  CLUS_4           0            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTT MUTATED        1      0      1      0      0
  HTT WILD-TYPE     43      8      9     36     18
D37V3, multiclass
[1] "Remove cluster labels:" "HTT MUTATED"           
clus
  HTT MUTATED HTT WILD-TYPE 
            2           114 
   TCGA-2G-AAEW    TCGA-2G-AAEX    TCGA-2G-AAF1    TCGA-2G-AAF4    TCGA-2G-AAF6 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAF8    TCGA-2G-AAFG    TCGA-2G-AAFJ    TCGA-2G-AAFL    TCGA-2G-AAFM 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAFN    TCGA-2G-AAFY    TCGA-2G-AAFZ    TCGA-2G-AAG0    TCGA-2G-AAG3 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAG5    TCGA-2G-AAG6    TCGA-2G-AAG7    TCGA-2G-AAG8    TCGA-2G-AAG9 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAGC    TCGA-2G-AAGF    TCGA-2G-AAGG    TCGA-2G-AAGI    TCGA-2G-AAGJ 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAGK    TCGA-2G-AAGM    TCGA-2G-AAGN    TCGA-2G-AAGO    TCGA-2G-AAGP 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAGS    TCGA-2G-AAGT    TCGA-2G-AAGV    TCGA-2G-AAGW    TCGA-2G-AAGX 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAGY    TCGA-2G-AAGZ    TCGA-2G-AAH0    TCGA-2G-AAH3    TCGA-2G-AAH4 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAH8    TCGA-2G-AAHA    TCGA-2G-AAHC    TCGA-2G-AAHG    TCGA-2G-AAHL 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAHP    TCGA-2G-AAHT    TCGA-2G-AAKG    TCGA-2G-AAKH    TCGA-2G-AAKL 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAKM    TCGA-2G-AAKO    TCGA-2G-AAL5    TCGA-2G-AAL7    TCGA-2G-AALF 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AALG    TCGA-2G-AALN    TCGA-2G-AALO    TCGA-2G-AALP    TCGA-2G-AALQ 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AALS    TCGA-2G-AALT    TCGA-2G-AALW    TCGA-2G-AALX    TCGA-2G-AALZ 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAM2    TCGA-2G-AAM3    TCGA-2G-AAM4    TCGA-2X-A9D5    TCGA-2X-A9D6 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-4K-AA1G    TCGA-4K-AA1H    TCGA-4K-AA1I    TCGA-S6-A8JW    TCGA-S6-A8JX 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-S6-A8JY    TCGA-SN-A84X    TCGA-SO-A8JP    TCGA-VF-A8A8    TCGA-VF-A8AA 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-VF-A8AE    TCGA-W4-A7U2    TCGA-W4-A7U4    TCGA-X3-A8G4    TCGA-XE-A8H1 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-XE-A8H5    TCGA-XE-A9SE    TCGA-XE-AANI    TCGA-XE-AANJ    TCGA-XE-AANR 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-XE-AANV    TCGA-XE-AAO3    TCGA-XE-AAO4    TCGA-XE-AAO6    TCGA-XE-AAOB 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-XE-AAOC    TCGA-XE-AAOD    TCGA-XE-AAOF    TCGA-XE-AAOJ    TCGA-XE-AAOL 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-XY-A89B    TCGA-XY-A9T9    TCGA-YU-A90P    TCGA-YU-A90Q    TCGA-YU-A90S 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-YU-A90W    TCGA-YU-A90Y    TCGA-YU-A912    TCGA-YU-A94I    TCGA-YU-AA61 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-ZM-AA05    TCGA-ZM-AA0B    TCGA-ZM-AA0D    TCGA-ZM-AA0E 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HTT MUTATED        1      1      0
  HTT WILD-TYPE     49     23     42
D37V4, multiclass
[1] "Remove cluster labels:" "HTT MUTATED"           
clus
  HTT MUTATED HTT WILD-TYPE 
            2           114 
   TCGA-2G-AAEW    TCGA-2G-AAEX    TCGA-2G-AAF1    TCGA-2G-AAF4    TCGA-2G-AAF6 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAF8    TCGA-2G-AAFG    TCGA-2G-AAFJ    TCGA-2G-AAFL    TCGA-2G-AAFM 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAFN    TCGA-2G-AAFY    TCGA-2G-AAFZ    TCGA-2G-AAG0    TCGA-2G-AAG3 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAG5    TCGA-2G-AAG6    TCGA-2G-AAG7    TCGA-2G-AAG8    TCGA-2G-AAG9 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAGC    TCGA-2G-AAGF    TCGA-2G-AAGG    TCGA-2G-AAGI    TCGA-2G-AAGJ 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAGK    TCGA-2G-AAGM    TCGA-2G-AAGN    TCGA-2G-AAGO    TCGA-2G-AAGP 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAGS    TCGA-2G-AAGT    TCGA-2G-AAGV    TCGA-2G-AAGW    TCGA-2G-AAGX 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAGY    TCGA-2G-AAGZ    TCGA-2G-AAH0    TCGA-2G-AAH3    TCGA-2G-AAH4 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAH8    TCGA-2G-AAHA    TCGA-2G-AAHC    TCGA-2G-AAHG    TCGA-2G-AAHL 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAHP    TCGA-2G-AAHT    TCGA-2G-AAKG    TCGA-2G-AAKH    TCGA-2G-AAKL 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAKM    TCGA-2G-AAKO    TCGA-2G-AAL5    TCGA-2G-AAL7    TCGA-2G-AALF 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AALG    TCGA-2G-AALN    TCGA-2G-AALO    TCGA-2G-AALP    TCGA-2G-AALQ 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AALS    TCGA-2G-AALT    TCGA-2G-AALW    TCGA-2G-AALX    TCGA-2G-AALZ 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-2G-AAM2    TCGA-2G-AAM3    TCGA-2G-AAM4    TCGA-2X-A9D5    TCGA-2X-A9D6 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-4K-AA1G    TCGA-4K-AA1H    TCGA-4K-AA1I    TCGA-S6-A8JW    TCGA-S6-A8JX 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-S6-A8JY    TCGA-SN-A84X    TCGA-SO-A8JP    TCGA-VF-A8A8    TCGA-VF-A8AA 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-VF-A8AE    TCGA-W4-A7U2    TCGA-W4-A7U4    TCGA-X3-A8G4    TCGA-XE-A8H1 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-XE-A8H5    TCGA-XE-A9SE    TCGA-XE-AANI    TCGA-XE-AANJ    TCGA-XE-AANR 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-XE-AANV    TCGA-XE-AAO3    TCGA-XE-AAO4    TCGA-XE-AAO6    TCGA-XE-AAOB 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-XE-AAOC    TCGA-XE-AAOD    TCGA-XE-AAOF    TCGA-XE-AAOJ    TCGA-XE-AAOL 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-XY-A89B    TCGA-XY-A9T9    TCGA-YU-A90P    TCGA-YU-A90Q    TCGA-YU-A90S 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-YU-A90W    TCGA-YU-A90Y    TCGA-YU-A912    TCGA-YU-A94I    TCGA-YU-AA61 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
   TCGA-ZM-AA05    TCGA-ZM-AA0B    TCGA-ZM-AA0D    TCGA-ZM-AA0E 
"HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" "HTT WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HTT MUTATED        1      1      1      0      0      0      0
  HTT WILD-TYPE     32     28     32     22      8     21      1
D37V5, multiclass
        clus
vv       HTT MUTATED HTT WILD-TYPE
  CLUS_1           1            32
  CLUS_2           1            28
  CLUS_3           1            32
  CLUS_4           0            22
  CLUS_5           0             8
  CLUS_6           0            21
  CLUS_7           0             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HTT MUTATED        1      1      1      0      0      0      0
  HTT WILD-TYPE     41     25     11     24      8     23     12
D37V6, multiclass
        clus
vv       HTT MUTATED HTT WILD-TYPE
  CLUS_1           1            41
  CLUS_2           1            25
  CLUS_3           1            11
  CLUS_4           0            24
  CLUS_5           0             8
  CLUS_6           0            23
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HTT MUTATED        2      1      0
  HTT WILD-TYPE     48     55     41
D37V7, multiclass
        clus
vv       HTT MUTATED HTT WILD-TYPE
  CLUS_1           2            48
  CLUS_2           1            55
  CLUS_3           0            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HTT MUTATED        2      1      0
  HTT WILD-TYPE     66     37     41
D37V8, multiclass
        clus
vv       HTT MUTATED HTT WILD-TYPE
  CLUS_1           2            66
  CLUS_2           1            37
  CLUS_3           0            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HTT MUTATED        2      1      0
  HTT WILD-TYPE     65     35     44
D37V9, multiclass
        clus
vv       HTT MUTATED HTT WILD-TYPE
  CLUS_1           2            65
  CLUS_2           1            35
  CLUS_3           0            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HTT MUTATED        1      1      1      0      0      0
  HTT WILD-TYPE     32     34     18     27     19     14
D37V10, multiclass
        clus
vv       HTT MUTATED HTT WILD-TYPE
  CLUS_1           1            32
  CLUS_2           1            34
  CLUS_3           1            18
  CLUS_4           0            27
  CLUS_5           0            19
  CLUS_6           0            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = EZH2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EZH2 MUTATED        2      1      1      0
  EZH2 WILD-TYPE     45     31     53     14
D38V1, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            1             31
  CLUS_3            1             53
  CLUS_4            0             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EZH2 MUTATED        2      0      2      0
  EZH2 WILD-TYPE     41     20     32     50
D38V2, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            2             41
  CLUS_2            0             20
  CLUS_3            2             32
  CLUS_4            0             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EZH2 MUTATED        0      0      0      0      1
  EZH2 WILD-TYPE     44      8     10     36     17
D38V3, multiclass
[1] "Remove cluster labels:" "EZH2 MUTATED"          
clus
  EZH2 MUTATED EZH2 WILD-TYPE 
             1            115 
    TCGA-2G-AAEW     TCGA-2G-AAEX     TCGA-2G-AAF1     TCGA-2G-AAF4 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAF6     TCGA-2G-AAF8     TCGA-2G-AAFG     TCGA-2G-AAFI 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAFJ     TCGA-2G-AAFL     TCGA-2G-AAFM     TCGA-2G-AAFY 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAFZ     TCGA-2G-AAG0     TCGA-2G-AAG3     TCGA-2G-AAG5 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAG6     TCGA-2G-AAG7     TCGA-2G-AAG8     TCGA-2G-AAG9 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGC     TCGA-2G-AAGF     TCGA-2G-AAGG     TCGA-2G-AAGI 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGJ     TCGA-2G-AAGK     TCGA-2G-AAGM     TCGA-2G-AAGN 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGO     TCGA-2G-AAGP     TCGA-2G-AAGS     TCGA-2G-AAGT 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGV     TCGA-2G-AAGW     TCGA-2G-AAGX     TCGA-2G-AAGY 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGZ     TCGA-2G-AAH0     TCGA-2G-AAH3     TCGA-2G-AAH4 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAH8     TCGA-2G-AAHA     TCGA-2G-AAHC     TCGA-2G-AAHG 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAHL     TCGA-2G-AAHP     TCGA-2G-AAHT     TCGA-2G-AAKG 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAKH     TCGA-2G-AAKL     TCGA-2G-AAKM     TCGA-2G-AAKO 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAL5     TCGA-2G-AAL7     TCGA-2G-AALF     TCGA-2G-AALG 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AALN     TCGA-2G-AALO     TCGA-2G-AALP     TCGA-2G-AALQ 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AALS     TCGA-2G-AALT     TCGA-2G-AALW     TCGA-2G-AALX 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AALZ     TCGA-2G-AAM2     TCGA-2G-AAM3     TCGA-2G-AAM4 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2X-A9D5     TCGA-2X-A9D6     TCGA-4K-AA1G     TCGA-4K-AA1H 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-4K-AA1I     TCGA-S6-A8JW     TCGA-S6-A8JX     TCGA-S6-A8JY 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-SN-A6IS     TCGA-SN-A84X     TCGA-SO-A8JP     TCGA-VF-A8A8 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-VF-A8AA     TCGA-VF-A8AE     TCGA-W4-A7U2     TCGA-W4-A7U4 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-X3-A8G4     TCGA-XE-A8H1     TCGA-XE-A8H5     TCGA-XE-A9SE 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-XE-AANI     TCGA-XE-AANJ     TCGA-XE-AANR     TCGA-XE-AANV 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-XE-AAO3     TCGA-XE-AAO4     TCGA-XE-AAO6     TCGA-XE-AAOB 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-XE-AAOC     TCGA-XE-AAOD     TCGA-XE-AAOF     TCGA-XE-AAOJ 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-XE-AAOL     TCGA-XY-A89B     TCGA-XY-A9T9     TCGA-YU-A90P 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-YU-A90Q     TCGA-YU-A90S     TCGA-YU-A90W     TCGA-YU-A90Y 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-YU-A912     TCGA-YU-A94I     TCGA-YU-AA61     TCGA-ZM-AA05 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-ZM-AA0B     TCGA-ZM-AA0D     TCGA-ZM-AA0E 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EZH2 MUTATED        0      0      1
  EZH2 WILD-TYPE     50     24     41
D38V4, multiclass
[1] "Remove cluster labels:" "EZH2 MUTATED"          
clus
  EZH2 MUTATED EZH2 WILD-TYPE 
             1            115 
    TCGA-2G-AAEW     TCGA-2G-AAEX     TCGA-2G-AAF1     TCGA-2G-AAF4 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAF6     TCGA-2G-AAF8     TCGA-2G-AAFG     TCGA-2G-AAFI 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAFJ     TCGA-2G-AAFL     TCGA-2G-AAFM     TCGA-2G-AAFY 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAFZ     TCGA-2G-AAG0     TCGA-2G-AAG3     TCGA-2G-AAG5 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAG6     TCGA-2G-AAG7     TCGA-2G-AAG8     TCGA-2G-AAG9 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGC     TCGA-2G-AAGF     TCGA-2G-AAGG     TCGA-2G-AAGI 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGJ     TCGA-2G-AAGK     TCGA-2G-AAGM     TCGA-2G-AAGN 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGO     TCGA-2G-AAGP     TCGA-2G-AAGS     TCGA-2G-AAGT 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGV     TCGA-2G-AAGW     TCGA-2G-AAGX     TCGA-2G-AAGY 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAGZ     TCGA-2G-AAH0     TCGA-2G-AAH3     TCGA-2G-AAH4 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAH8     TCGA-2G-AAHA     TCGA-2G-AAHC     TCGA-2G-AAHG 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAHL     TCGA-2G-AAHP     TCGA-2G-AAHT     TCGA-2G-AAKG 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAKH     TCGA-2G-AAKL     TCGA-2G-AAKM     TCGA-2G-AAKO 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AAL5     TCGA-2G-AAL7     TCGA-2G-AALF     TCGA-2G-AALG 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AALN     TCGA-2G-AALO     TCGA-2G-AALP     TCGA-2G-AALQ 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AALS     TCGA-2G-AALT     TCGA-2G-AALW     TCGA-2G-AALX 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2G-AALZ     TCGA-2G-AAM2     TCGA-2G-AAM3     TCGA-2G-AAM4 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-2X-A9D5     TCGA-2X-A9D6     TCGA-4K-AA1G     TCGA-4K-AA1H 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-4K-AA1I     TCGA-S6-A8JW     TCGA-S6-A8JX     TCGA-S6-A8JY 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-SN-A6IS     TCGA-SN-A84X     TCGA-SO-A8JP     TCGA-VF-A8A8 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-VF-A8AA     TCGA-VF-A8AE     TCGA-W4-A7U2     TCGA-W4-A7U4 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-X3-A8G4     TCGA-XE-A8H1     TCGA-XE-A8H5     TCGA-XE-A9SE 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-XE-AANI     TCGA-XE-AANJ     TCGA-XE-AANR     TCGA-XE-AANV 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-XE-AAO3     TCGA-XE-AAO4     TCGA-XE-AAO6     TCGA-XE-AAOB 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-XE-AAOC     TCGA-XE-AAOD     TCGA-XE-AAOF     TCGA-XE-AAOJ 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-XE-AAOL     TCGA-XY-A89B     TCGA-XY-A9T9     TCGA-YU-A90P 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-YU-A90Q     TCGA-YU-A90S     TCGA-YU-A90W     TCGA-YU-A90Y 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-YU-A912     TCGA-YU-A94I     TCGA-YU-AA61     TCGA-ZM-AA05 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
    TCGA-ZM-AA0B     TCGA-ZM-AA0D     TCGA-ZM-AA0E 
"EZH2 WILD-TYPE" "EZH2 WILD-TYPE" "EZH2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EZH2 MUTATED        2      0      2      0      0      0      0
  EZH2 WILD-TYPE     31     29     31     22      8     21      1
D38V5, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             29
  CLUS_3            2             31
  CLUS_4            0             22
  CLUS_5            0              8
  CLUS_6            0             21
  CLUS_7            0              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EZH2 MUTATED        2      0      0      0      0      2      0
  EZH2 WILD-TYPE     40     26     12     24      8     21     12
D38V6, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            2             40
  CLUS_2            0             26
  CLUS_3            0             12
  CLUS_4            0             24
  CLUS_5            0              8
  CLUS_6            2             21
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EZH2 MUTATED        2      2      0
  EZH2 WILD-TYPE     48     54     41
D38V7, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            2             48
  CLUS_2            2             54
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EZH2 MUTATED        2      2      0
  EZH2 WILD-TYPE     66     36     41
D38V8, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            2             66
  CLUS_2            2             36
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EZH2 MUTATED        2      2      0
  EZH2 WILD-TYPE     65     34     44
D38V9, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            2             34
  CLUS_3            0             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EZH2 MUTATED        2      0      1      0      1      0
  EZH2 WILD-TYPE     31     35     18     27     18     14
D38V10, multiclass
        clus
vv       EZH2 MUTATED EZH2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             35
  CLUS_3            1             18
  CLUS_4            0             27
  CLUS_5            1             18
  CLUS_6            0             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = PABPC3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PABPC3 MUTATED        2      1      1      0
  PABPC3 WILD-TYPE     45     31     53     14
D39V1, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               31
  CLUS_3              1               53
  CLUS_4              0               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PABPC3 MUTATED        1      0      0      3
  PABPC3 WILD-TYPE     42     20     34     47
D39V2, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              1               42
  CLUS_2              0               20
  CLUS_3              0               34
  CLUS_4              3               47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PABPC3 MUTATED        1      0      0      1      0
  PABPC3 WILD-TYPE     43      8     10     35     18
D39V3, multiclass
[1] "Remove cluster labels:" "PABPC3 MUTATED"        
clus
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               2              114 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAGN       TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAGT       TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGY 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3       TCGA-2G-AAH4 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC       TCGA-2G-AAHG 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY       TCGA-SN-A6IS 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8       TCGA-VF-A8AA 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4       TCGA-X3-A8G4 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE       TCGA-XE-AANI 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV       TCGA-XE-AAO3 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB       TCGA-XE-AAOC 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ       TCGA-XE-AAOL 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P       TCGA-YU-A90Q 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y       TCGA-YU-A912 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05       TCGA-ZM-AA0B 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC3 MUTATED        1      1      0
  PABPC3 WILD-TYPE     49     23     42
D39V4, multiclass
[1] "Remove cluster labels:" "PABPC3 MUTATED"        
clus
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               2              114 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAGN       TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAGT       TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGY 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3       TCGA-2G-AAH4 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC       TCGA-2G-AAHG 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY       TCGA-SN-A6IS 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8       TCGA-VF-A8AA 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4       TCGA-X3-A8G4 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE       TCGA-XE-AANI 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV       TCGA-XE-AAO3 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB       TCGA-XE-AAOC 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ       TCGA-XE-AAOL 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P       TCGA-YU-A90Q 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y       TCGA-YU-A912 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05       TCGA-ZM-AA0B 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PABPC3 MUTATED        1      0      0      1      1      1      0
  PABPC3 WILD-TYPE     32     29     33     21      7     20      1
D39V5, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               29
  CLUS_3              0               33
  CLUS_4              1               21
  CLUS_5              1                7
  CLUS_6              1               20
  CLUS_7              0                1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PABPC3 MUTATED        2      0      0      1      0      0      1
  PABPC3 WILD-TYPE     40     26     12     23      8     23     11
D39V6, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              2               40
  CLUS_2              0               26
  CLUS_3              0               12
  CLUS_4              1               23
  CLUS_5              0                8
  CLUS_6              0               23
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC3 MUTATED        2      0      2
  PABPC3 WILD-TYPE     48     56     39
D39V7, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              2               48
  CLUS_2              0               56
  CLUS_3              2               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC3 MUTATED        2      0      2
  PABPC3 WILD-TYPE     66     38     39
D39V8, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              2               66
  CLUS_2              0               38
  CLUS_3              2               39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC3 MUTATED        2      0      2
  PABPC3 WILD-TYPE     65     36     42
D39V9, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              0               36
  CLUS_3              2               42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PABPC3 MUTATED        2      0      0      2      0      0
  PABPC3 WILD-TYPE     31     35     19     25     19     14
D39V10, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               35
  CLUS_3              0               19
  CLUS_4              2               25
  CLUS_5              0               19
  CLUS_6              0               14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = CUX1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUX1 MUTATED        1      1      3      0
  CUX1 WILD-TYPE     46     31     51     14
D40V1, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            1             31
  CLUS_3            3             51
  CLUS_4            0             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUX1 MUTATED        2      0      1      2
  CUX1 WILD-TYPE     41     20     33     48
D40V2, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            2             41
  CLUS_2            0             20
  CLUS_3            1             33
  CLUS_4            2             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUX1 MUTATED        1      0      0      1      1
  CUX1 WILD-TYPE     43      8     10     35     17
D40V3, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            1             35
  CLUS_5            1             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX1 MUTATED        1      0      2
  CUX1 WILD-TYPE     49     24     40
D40V4, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            1             49
  CLUS_2            0             24
  CLUS_3            2             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUX1 MUTATED        0      1      1      1      1      1      0
  CUX1 WILD-TYPE     33     28     32     21      7     20      1
D40V5, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             28
  CLUS_3            1             32
  CLUS_4            1             21
  CLUS_5            1              7
  CLUS_6            1             20
  CLUS_7            0              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  CUX1 MUTATED        1      1      0      1      0      1      1
  CUX1 WILD-TYPE     41     25     12     23      8     22     11
D40V6, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            1             41
  CLUS_2            1             25
  CLUS_3            0             12
  CLUS_4            1             23
  CLUS_5            0              8
  CLUS_6            1             22
  CLUS_7            1             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX1 MUTATED        2      1      2
  CUX1 WILD-TYPE     48     55     39
D40V7, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            2             48
  CLUS_2            1             55
  CLUS_3            2             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX1 MUTATED        2      1      2
  CUX1 WILD-TYPE     66     37     39
D40V8, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            2             66
  CLUS_2            1             37
  CLUS_3            2             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUX1 MUTATED        2      1      2
  CUX1 WILD-TYPE     65     35     42
D40V9, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            1             35
  CLUS_3            2             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CUX1 MUTATED        1      1      1      2      0      0
  CUX1 WILD-TYPE     32     34     18     25     19     14
D40V10, multiclass
        clus
vv       CUX1 MUTATED CUX1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             34
  CLUS_3            1             18
  CLUS_4            2             25
  CLUS_5            0             19
  CLUS_6            0             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DLC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        2      1      0      0
  DLC1 WILD-TYPE     45     31     54     14
D41V1, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            1             31
  CLUS_3            0             54
  CLUS_4            0             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLC1 MUTATED        1      0      1      1
  DLC1 WILD-TYPE     42     20     33     49
D41V2, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1             42
  CLUS_2            0             20
  CLUS_3            1             33
  CLUS_4            1             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLC1 MUTATED        2      0      0      0      1
  DLC1 WILD-TYPE     42      8     10     36     17
D41V3, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            0             36
  CLUS_5            1             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        2      0      1
  DLC1 WILD-TYPE     48     24     41
D41V4, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2             48
  CLUS_2            0             24
  CLUS_3            1             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DLC1 MUTATED        1      1      1      0      0      0      0
  DLC1 WILD-TYPE     32     28     32     22      8     21      1
D41V5, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             28
  CLUS_3            1             32
  CLUS_4            0             22
  CLUS_5            0              8
  CLUS_6            0             21
  CLUS_7            0              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DLC1 MUTATED        1      1      0      0      0      1      0
  DLC1 WILD-TYPE     41     25     12     24      8     22     12
D41V6, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1             41
  CLUS_2            1             25
  CLUS_3            0             12
  CLUS_4            0             24
  CLUS_5            0              8
  CLUS_6            1             22
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        2      1      0
  DLC1 WILD-TYPE     48     55     41
D41V7, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2             48
  CLUS_2            1             55
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        2      1      0
  DLC1 WILD-TYPE     66     37     41
D41V8, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2             66
  CLUS_2            1             37
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLC1 MUTATED        2      1      0
  DLC1 WILD-TYPE     65     35     44
D41V9, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            1             35
  CLUS_3            0             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DLC1 MUTATED        1      1      0      0      1      0
  DLC1 WILD-TYPE     32     34     19     27     18     14
D41V10, multiclass
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             34
  CLUS_3            0             19
  CLUS_4            0             27
  CLUS_5            1             18
  CLUS_6            0             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = STAB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAB1 MUTATED        3      1      2      1
  STAB1 WILD-TYPE     44     31     52     13
D42V1, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              31
  CLUS_3             2              52
  CLUS_4             1              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAB1 MUTATED        3      1      3      0
  STAB1 WILD-TYPE     40     19     31     50
D42V2, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             3              40
  CLUS_2             1              19
  CLUS_3             3              31
  CLUS_4             0              50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAB1 MUTATED        2      0      1      0      1
  STAB1 WILD-TYPE     42      8      9     36     17
D42V3, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             0              36
  CLUS_5             1              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAB1 MUTATED        2      1      1
  STAB1 WILD-TYPE     48     23     41
D42V4, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             1              23
  CLUS_3             1              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STAB1 MUTATED        2      1      3      0      1      0      0
  STAB1 WILD-TYPE     31     28     30     22      7     21      1
D42V5, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              28
  CLUS_3             3              30
  CLUS_4             0              22
  CLUS_5             1               7
  CLUS_6             0              21
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  STAB1 MUTATED        3      1      0      0      0      3      0
  STAB1 WILD-TYPE     39     25     12     24      8     20     12
D42V6, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             3              39
  CLUS_2             1              25
  CLUS_3             0              12
  CLUS_4             0              24
  CLUS_5             0               8
  CLUS_6             3              20
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAB1 MUTATED        3      4      0
  STAB1 WILD-TYPE     47     52     41
D42V7, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             4              52
  CLUS_3             0              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAB1 MUTATED        4      3      0
  STAB1 WILD-TYPE     64     35     41
D42V8, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             4              64
  CLUS_2             3              35
  CLUS_3             0              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAB1 MUTATED        4      3      0
  STAB1 WILD-TYPE     63     33     44
D42V9, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             4              63
  CLUS_2             3              33
  CLUS_3             0              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAB1 MUTATED        2      2      2      0      1      0
  STAB1 WILD-TYPE     31     33     17     27     18     14
D42V10, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              33
  CLUS_3             2              17
  CLUS_4             0              27
  CLUS_5             1              18
  CLUS_6             0              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = NOTCH1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        2      2      1      0
  NOTCH1 WILD-TYPE     45     30     53     14
D43V1, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              2               30
  CLUS_3              1               53
  CLUS_4              0               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH1 MUTATED        2      1      1      1
  NOTCH1 WILD-TYPE     41     19     33     49
D43V2, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              2               41
  CLUS_2              1               19
  CLUS_3              1               33
  CLUS_4              1               49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOTCH1 MUTATED        2      1      1      0      1
  NOTCH1 WILD-TYPE     42      7      9     36     17
D43V3, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              0               36
  CLUS_5              1               17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        3      1      1
  NOTCH1 WILD-TYPE     47     23     41
D43V4, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              1               23
  CLUS_3              1               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOTCH1 MUTATED        0      3      1      0      1      0      0
  NOTCH1 WILD-TYPE     33     26     32     22      7     21      1
D43V5, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              3               26
  CLUS_3              1               32
  CLUS_4              0               22
  CLUS_5              1                7
  CLUS_6              0               21
  CLUS_7              0                1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NOTCH1 MUTATED        1      3      0      0      0      1      0
  NOTCH1 WILD-TYPE     41     23     12     24      8     22     12
D43V6, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              1               41
  CLUS_2              3               23
  CLUS_3              0               12
  CLUS_4              0               24
  CLUS_5              0                8
  CLUS_6              1               22
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        3      2      0
  NOTCH1 WILD-TYPE     47     54     41
D43V7, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              2               54
  CLUS_3              0               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        4      1      0
  NOTCH1 WILD-TYPE     64     37     41
D43V8, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              4               64
  CLUS_2              1               37
  CLUS_3              0               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH1 MUTATED        4      1      0
  NOTCH1 WILD-TYPE     63     35     44
D43V9, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              4               63
  CLUS_2              1               35
  CLUS_3              0               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOTCH1 MUTATED        2      2      1      0      0      0
  NOTCH1 WILD-TYPE     31     33     18     27     19     14
D43V10, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               33
  CLUS_3              1               18
  CLUS_4              0               27
  CLUS_5              0               19
  CLUS_6              0               14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = AHDC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHDC1 MUTATED        2      0      2      0
  AHDC1 WILD-TYPE     45     32     52     14
D44V1, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              32
  CLUS_3             2              52
  CLUS_4             0              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AHDC1 MUTATED        0      0      0      4
  AHDC1 WILD-TYPE     43     20     34     46
D44V2, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              43
  CLUS_2             0              20
  CLUS_3             0              34
  CLUS_4             4              46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AHDC1 MUTATED        0      0      2      2      0
  AHDC1 WILD-TYPE     44      8      8     34     18
D44V3, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              44
  CLUS_2             0               8
  CLUS_3             2               8
  CLUS_4             2              34
  CLUS_5             0              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AHDC1 MUTATED        0      2      2
  AHDC1 WILD-TYPE     50     22     40
D44V4, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              50
  CLUS_2             2              22
  CLUS_3             2              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AHDC1 MUTATED        0      0      0      2      0      2      0
  AHDC1 WILD-TYPE     33     29     33     20      8     19      1
D44V5, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              29
  CLUS_3             0              33
  CLUS_4             2              20
  CLUS_5             0               8
  CLUS_6             2              19
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AHDC1 MUTATED        0      0      0      2      0      0      2
  AHDC1 WILD-TYPE     42     26     12     22      8     23     10
D44V6, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              42
  CLUS_2             0              26
  CLUS_3             0              12
  CLUS_4             2              22
  CLUS_5             0               8
  CLUS_6             0              23
  CLUS_7             2              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AHDC1 MUTATED        0      0      4
  AHDC1 WILD-TYPE     50     56     37
D44V7, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              50
  CLUS_2             0              56
  CLUS_3             4              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AHDC1 MUTATED        0      0      4
  AHDC1 WILD-TYPE     68     38     37
D44V8, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              68
  CLUS_2             0              38
  CLUS_3             4              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AHDC1 MUTATED        0      0      4
  AHDC1 WILD-TYPE     67     36     40
D44V9, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             0              36
  CLUS_3             4              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AHDC1 MUTATED        0      0      0      4      0      0
  AHDC1 WILD-TYPE     33     35     19     23     19     14
D44V10, multiclass
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              35
  CLUS_3             0              19
  CLUS_4             4              23
  CLUS_5             0              19
  CLUS_6             0              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = EPAS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPAS1 MUTATED        2      0      3      0
  EPAS1 WILD-TYPE     45     32     51     14
D45V1, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              32
  CLUS_3             3              51
  CLUS_4             0              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPAS1 MUTATED        2      0      1      2
  EPAS1 WILD-TYPE     41     20     33     48
D45V2, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             2              41
  CLUS_2             0              20
  CLUS_3             1              33
  CLUS_4             2              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPAS1 MUTATED        1      0      0      2      1
  EPAS1 WILD-TYPE     43      8     10     34     17
D45V3, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             2              34
  CLUS_5             1              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPAS1 MUTATED        1      1      2
  EPAS1 WILD-TYPE     49     23     40
D45V4, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             1              49
  CLUS_2             1              23
  CLUS_3             2              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPAS1 MUTATED        2      0      1      0      0      2      0
  EPAS1 WILD-TYPE     31     29     32     22      8     19      1
D45V5, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              29
  CLUS_3             1              32
  CLUS_4             0              22
  CLUS_5             0               8
  CLUS_6             2              19
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EPAS1 MUTATED        2      0      0      1      0      1      1
  EPAS1 WILD-TYPE     40     26     12     23      8     22     11
D45V6, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             2              40
  CLUS_2             0              26
  CLUS_3             0              12
  CLUS_4             1              23
  CLUS_5             0               8
  CLUS_6             1              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPAS1 MUTATED        2      1      2
  EPAS1 WILD-TYPE     48     55     39
D45V7, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             1              55
  CLUS_3             2              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPAS1 MUTATED        2      1      2
  EPAS1 WILD-TYPE     66     37     39
D45V8, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             1              37
  CLUS_3             2              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPAS1 MUTATED        2      1      2
  EPAS1 WILD-TYPE     65     35     42
D45V9, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              35
  CLUS_3             2              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPAS1 MUTATED        2      0      1      1      0      1
  EPAS1 WILD-TYPE     31     35     18     26     19     13
D45V10, multiclass
        clus
vv       EPAS1 MUTATED EPAS1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              35
  CLUS_3             1              18
  CLUS_4             1              26
  CLUS_5             0              19
  CLUS_6             1              13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = PIK3CD MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CD MUTATED        4      0      0      0
  PIK3CD WILD-TYPE     43     32     54     14
D46V1, multiclass
        clus
vv       PIK3CD MUTATED PIK3CD WILD-TYPE
  CLUS_1              4               43
  CLUS_2              0               32
  CLUS_3              0               54
  CLUS_4              0               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CD MUTATED        3      0      0      1
  PIK3CD WILD-TYPE     40     20     34     49
D46V2, multiclass
        clus
vv       PIK3CD MUTATED PIK3CD WILD-TYPE
  CLUS_1              3               40
  CLUS_2              0               20
  CLUS_3              0               34
  CLUS_4              1               49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CD MUTATED        2      0      0      0      0
  PIK3CD WILD-TYPE     42      8     10     36     18
D46V3, multiclass
[1] "Remove cluster labels:" "PIK3CD MUTATED"        
clus
  PIK3CD MUTATED PIK3CD WILD-TYPE 
               2              114 
      TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4       TCGA-2G-AAF6 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI       TCGA-2G-AAFJ 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN       TCGA-2G-AAFY 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3       TCGA-2G-AAG5 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8       TCGA-2G-AAG9 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG       TCGA-2G-AAGI 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM       TCGA-2G-AAGN 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS       TCGA-2G-AAGT 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGX       TCGA-2G-AAGY 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3       TCGA-2G-AAH4 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC       TCGA-2G-AAHG 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-4K-AA1I       TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-SN-A6IS       TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4       TCGA-X3-A8G4 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE       TCGA-XE-AANI 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV       TCGA-XE-AAO3 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB       TCGA-XE-AAOC 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ       TCGA-XE-AAOL 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P       TCGA-YU-A90Q 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y       TCGA-YU-A912 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05       TCGA-ZM-AA0B 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CD MUTATED        2      0      0
  PIK3CD WILD-TYPE     48     24     42
D46V4, multiclass
[1] "Remove cluster labels:" "PIK3CD MUTATED"        
clus
  PIK3CD MUTATED PIK3CD WILD-TYPE 
               2              114 
      TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4       TCGA-2G-AAF6 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI       TCGA-2G-AAFJ 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN       TCGA-2G-AAFY 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3       TCGA-2G-AAG5 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8       TCGA-2G-AAG9 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG       TCGA-2G-AAGI 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM       TCGA-2G-AAGN 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGO       TCGA-2G-AAGP       TCGA-2G-AAGS       TCGA-2G-AAGT 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGX       TCGA-2G-AAGY 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3       TCGA-2G-AAH4 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC       TCGA-2G-AAHG 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-4K-AA1I       TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-SN-A6IS       TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4       TCGA-X3-A8G4 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE       TCGA-XE-AANI 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV       TCGA-XE-AAO3 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB       TCGA-XE-AAOC 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ       TCGA-XE-AAOL 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P       TCGA-YU-A90Q 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y       TCGA-YU-A912 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05       TCGA-ZM-AA0B 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
      TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"PIK3CD WILD-TYPE" "PIK3CD WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3CD MUTATED        3      0      0      0      0      1      0
  PIK3CD WILD-TYPE     30     29     33     22      8     20      1
D46V5, multiclass
        clus
vv       PIK3CD MUTATED PIK3CD WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               29
  CLUS_3              0               33
  CLUS_4              0               22
  CLUS_5              0                8
  CLUS_6              1               20
  CLUS_7              0                1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PIK3CD MUTATED        3      0      0      0      0      0      1
  PIK3CD WILD-TYPE     39     26     12     24      8     23     11
D46V6, multiclass
        clus
vv       PIK3CD MUTATED PIK3CD WILD-TYPE
  CLUS_1              3               39
  CLUS_2              0               26
  CLUS_3              0               12
  CLUS_4              0               24
  CLUS_5              0                8
  CLUS_6              0               23
  CLUS_7              1               11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CD MUTATED        3      0      1
  PIK3CD WILD-TYPE     47     56     40
D46V7, multiclass
        clus
vv       PIK3CD MUTATED PIK3CD WILD-TYPE
  CLUS_1              3               47
  CLUS_2              0               56
  CLUS_3              1               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CD MUTATED        3      0      1
  PIK3CD WILD-TYPE     65     38     40
D46V8, multiclass
        clus
vv       PIK3CD MUTATED PIK3CD WILD-TYPE
  CLUS_1              3               65
  CLUS_2              0               38
  CLUS_3              1               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CD MUTATED        3      0      1
  PIK3CD WILD-TYPE     64     36     43
D46V9, multiclass
        clus
vv       PIK3CD MUTATED PIK3CD WILD-TYPE
  CLUS_1              3               64
  CLUS_2              0               36
  CLUS_3              1               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3CD MUTATED        3      0      0      1      0      0
  PIK3CD WILD-TYPE     30     35     19     26     19     14
D46V10, multiclass
        clus
vv       PIK3CD MUTATED PIK3CD WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               35
  CLUS_3              0               19
  CLUS_4              1               26
  CLUS_5              0               19
  CLUS_6              0               14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = BCL11B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL11B MUTATED        2      3      0      0
  BCL11B WILD-TYPE     45     29     54     14
D47V1, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              2               45
  CLUS_2              3               29
  CLUS_3              0               54
  CLUS_4              0               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL11B MUTATED        2      1      0      2
  BCL11B WILD-TYPE     41     19     34     48
D47V2, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              2               41
  CLUS_2              1               19
  CLUS_3              0               34
  CLUS_4              2               48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL11B MUTATED        2      1      0      1      0
  BCL11B WILD-TYPE     42      7     10     35     18
D47V3, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              2               42
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4              1               35
  CLUS_5              0               18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL11B MUTATED        3      0      1
  BCL11B WILD-TYPE     47     24     41
D47V4, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              3               47
  CLUS_2              0               24
  CLUS_3              1               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCL11B MUTATED        3      1      0      1      0      0      0
  BCL11B WILD-TYPE     30     28     33     21      8     21      1
D47V5, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              3               30
  CLUS_2              1               28
  CLUS_3              0               33
  CLUS_4              1               21
  CLUS_5              0                8
  CLUS_6              0               21
  CLUS_7              0                1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BCL11B MUTATED        3      1      0      1      0      0      0
  BCL11B WILD-TYPE     39     25     12     23      8     23     12
D47V6, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              3               39
  CLUS_2              1               25
  CLUS_3              0               12
  CLUS_4              1               23
  CLUS_5              0                8
  CLUS_6              0               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL11B MUTATED        3      1      1
  BCL11B WILD-TYPE     47     55     40
D47V7, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              3               47
  CLUS_2              1               55
  CLUS_3              1               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL11B MUTATED        4      0      1
  BCL11B WILD-TYPE     64     38     40
D47V8, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              4               64
  CLUS_2              0               38
  CLUS_3              1               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL11B MUTATED        4      0      1
  BCL11B WILD-TYPE     63     36     43
D47V9, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              4               63
  CLUS_2              0               36
  CLUS_3              1               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCL11B MUTATED        1      3      0      1      0      0
  BCL11B WILD-TYPE     32     32     19     26     19     14
D47V10, multiclass
        clus
vv       BCL11B MUTATED BCL11B WILD-TYPE
  CLUS_1              1               32
  CLUS_2              3               32
  CLUS_3              0               19
  CLUS_4              1               26
  CLUS_5              0               19
  CLUS_6              0               14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = KIAA0430 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0430 MUTATED        2      1      0      0
  KIAA0430 WILD-TYPE     45     31     54     14
D48V1, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                2                 45
  CLUS_2                1                 31
  CLUS_3                0                 54
  CLUS_4                0                 14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0430 MUTATED        3      0      0      0
  KIAA0430 WILD-TYPE     40     20     34     50
D48V2, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                3                 40
  CLUS_2                0                 20
  CLUS_3                0                 34
  CLUS_4                0                 50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0430 MUTATED        1      1      0      0      0
  KIAA0430 WILD-TYPE     43      7     10     36     18
D48V3, multiclass
[1] "Remove cluster labels:" "KIAA0430 MUTATED"      
clus
  KIAA0430 MUTATED KIAA0430 WILD-TYPE 
                 2                114 
        TCGA-2G-AAEW         TCGA-2G-AAEX         TCGA-2G-AAF1 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAF4         TCGA-2G-AAF6         TCGA-2G-AAF8 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAFG         TCGA-2G-AAFI         TCGA-2G-AAFJ 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAFL         TCGA-2G-AAFM         TCGA-2G-AAFN 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAFZ         TCGA-2G-AAG0         TCGA-2G-AAG3 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAG5         TCGA-2G-AAG6         TCGA-2G-AAG7 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAG8         TCGA-2G-AAG9         TCGA-2G-AAGC 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAGF         TCGA-2G-AAGG         TCGA-2G-AAGI 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAGJ         TCGA-2G-AAGK         TCGA-2G-AAGM 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAGN         TCGA-2G-AAGO         TCGA-2G-AAGP 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAGS         TCGA-2G-AAGT         TCGA-2G-AAGV 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAGW         TCGA-2G-AAGX         TCGA-2G-AAGY 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAGZ         TCGA-2G-AAH0         TCGA-2G-AAH3 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAH4         TCGA-2G-AAH8         TCGA-2G-AAHA 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAHC         TCGA-2G-AAHG         TCGA-2G-AAHL 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAHP         TCGA-2G-AAHT         TCGA-2G-AAKG 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAKH         TCGA-2G-AAKL         TCGA-2G-AAKM 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAKO         TCGA-2G-AAL5         TCGA-2G-AAL7 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AALF         TCGA-2G-AALG         TCGA-2G-AALN 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AALO         TCGA-2G-AALP         TCGA-2G-AALQ 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AALS         TCGA-2G-AALT         TCGA-2G-AALW 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AALX         TCGA-2G-AALZ         TCGA-2G-AAM2 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAM3         TCGA-2G-AAM4         TCGA-2X-A9D6 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-4K-AA1G         TCGA-4K-AA1H         TCGA-4K-AA1I 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-S6-A8JW         TCGA-S6-A8JX         TCGA-S6-A8JY 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-SN-A6IS         TCGA-SN-A84X         TCGA-SO-A8JP 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-VF-A8A8         TCGA-VF-A8AA         TCGA-VF-A8AE 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-W4-A7U2         TCGA-W4-A7U4         TCGA-X3-A8G4 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-XE-A8H1         TCGA-XE-A8H5         TCGA-XE-A9SE 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-XE-AANI         TCGA-XE-AANJ         TCGA-XE-AANR 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-XE-AANV         TCGA-XE-AAO3         TCGA-XE-AAO4 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-XE-AAO6         TCGA-XE-AAOB         TCGA-XE-AAOC 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-XE-AAOD         TCGA-XE-AAOF         TCGA-XE-AAOJ 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-XE-AAOL         TCGA-XY-A89B         TCGA-XY-A9T9 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-YU-A90P         TCGA-YU-A90Q         TCGA-YU-A90S 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-YU-A90W         TCGA-YU-A90Y         TCGA-YU-A912 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-YU-A94I         TCGA-YU-AA61         TCGA-ZM-AA05 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-ZM-AA0B         TCGA-ZM-AA0D         TCGA-ZM-AA0E 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0430 MUTATED        1      0      1
  KIAA0430 WILD-TYPE     49     24     41
D48V4, multiclass
[1] "Remove cluster labels:" "KIAA0430 MUTATED"      
clus
  KIAA0430 MUTATED KIAA0430 WILD-TYPE 
                 2                114 
        TCGA-2G-AAEW         TCGA-2G-AAEX         TCGA-2G-AAF1 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAF4         TCGA-2G-AAF6         TCGA-2G-AAF8 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAFG         TCGA-2G-AAFI         TCGA-2G-AAFJ 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAFL         TCGA-2G-AAFM         TCGA-2G-AAFN 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAFZ         TCGA-2G-AAG0         TCGA-2G-AAG3 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAG5         TCGA-2G-AAG6         TCGA-2G-AAG7 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAG8         TCGA-2G-AAG9         TCGA-2G-AAGC 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAGF         TCGA-2G-AAGG         TCGA-2G-AAGI 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAGJ         TCGA-2G-AAGK         TCGA-2G-AAGM 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAGN         TCGA-2G-AAGO         TCGA-2G-AAGP 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAGS         TCGA-2G-AAGT         TCGA-2G-AAGV 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAGW         TCGA-2G-AAGX         TCGA-2G-AAGY 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAGZ         TCGA-2G-AAH0         TCGA-2G-AAH3 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAH4         TCGA-2G-AAH8         TCGA-2G-AAHA 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAHC         TCGA-2G-AAHG         TCGA-2G-AAHL 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAHP         TCGA-2G-AAHT         TCGA-2G-AAKG 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAKH         TCGA-2G-AAKL         TCGA-2G-AAKM 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAKO         TCGA-2G-AAL5         TCGA-2G-AAL7 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AALF         TCGA-2G-AALG         TCGA-2G-AALN 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AALO         TCGA-2G-AALP         TCGA-2G-AALQ 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AALS         TCGA-2G-AALT         TCGA-2G-AALW 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AALX         TCGA-2G-AALZ         TCGA-2G-AAM2 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-2G-AAM3         TCGA-2G-AAM4         TCGA-2X-A9D6 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-4K-AA1G         TCGA-4K-AA1H         TCGA-4K-AA1I 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-S6-A8JW         TCGA-S6-A8JX         TCGA-S6-A8JY 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-SN-A6IS         TCGA-SN-A84X         TCGA-SO-A8JP 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-VF-A8A8         TCGA-VF-A8AA         TCGA-VF-A8AE 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-W4-A7U2         TCGA-W4-A7U4         TCGA-X3-A8G4 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-XE-A8H1         TCGA-XE-A8H5         TCGA-XE-A9SE 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-XE-AANI         TCGA-XE-AANJ         TCGA-XE-AANR 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-XE-AANV         TCGA-XE-AAO3         TCGA-XE-AAO4 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-XE-AAO6         TCGA-XE-AAOB         TCGA-XE-AAOC 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-XE-AAOD         TCGA-XE-AAOF         TCGA-XE-AAOJ 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-XE-AAOL         TCGA-XY-A89B         TCGA-XY-A9T9 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-YU-A90P         TCGA-YU-A90Q         TCGA-YU-A90S 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-YU-A90W         TCGA-YU-A90Y         TCGA-YU-A912 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-YU-A94I         TCGA-YU-AA61         TCGA-ZM-AA05 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-ZM-AA0B         TCGA-ZM-AA0D         TCGA-ZM-AA0E 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0430 MUTATED        2      0      1      0      0      0      0
  KIAA0430 WILD-TYPE     31     29     32     22      8     21      1
D48V5, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                0                 29
  CLUS_3                1                 32
  CLUS_4                0                 22
  CLUS_5                0                  8
  CLUS_6                0                 21
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  KIAA0430 MUTATED        2      0      0      0      0      1      0
  KIAA0430 WILD-TYPE     40     26     12     24      8     22     12
D48V6, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                2                 40
  CLUS_2                0                 26
  CLUS_3                0                 12
  CLUS_4                0                 24
  CLUS_5                0                  8
  CLUS_6                1                 22
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0430 MUTATED        2      1      0
  KIAA0430 WILD-TYPE     48     55     41
D48V7, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                2                 48
  CLUS_2                1                 55
  CLUS_3                0                 41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0430 MUTATED        2      1      0
  KIAA0430 WILD-TYPE     66     37     41
D48V8, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                2                 66
  CLUS_2                1                 37
  CLUS_3                0                 41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0430 MUTATED        2      1      0
  KIAA0430 WILD-TYPE     65     35     44
D48V9, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                2                 65
  CLUS_2                1                 35
  CLUS_3                0                 44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0430 MUTATED        1      1      0      0      1      0
  KIAA0430 WILD-TYPE     32     34     19     27     18     14
D48V10, multiclass
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 34
  CLUS_3                0                 19
  CLUS_4                0                 27
  CLUS_5                1                 18
  CLUS_6                0                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = MTIF3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTIF3 MUTATED        1      1      1      0
  MTIF3 WILD-TYPE     46     31     53     14
D49V1, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              31
  CLUS_3             1              53
  CLUS_4             0              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTIF3 MUTATED        1      0      0      2
  MTIF3 WILD-TYPE     42     20     34     48
D49V2, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             1              42
  CLUS_2             0              20
  CLUS_3             0              34
  CLUS_4             2              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTIF3 MUTATED        2      0      0      1      0
  MTIF3 WILD-TYPE     42      8     10     35     18
D49V3, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             1              35
  CLUS_5             0              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF3 MUTATED        2      0      1
  MTIF3 WILD-TYPE     48     24     41
D49V4, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             0              24
  CLUS_3             1              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTIF3 MUTATED        1      1      0      1      0      0      0
  MTIF3 WILD-TYPE     32     28     33     21      8     21      1
D49V5, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              28
  CLUS_3             0              33
  CLUS_4             1              21
  CLUS_5             0               8
  CLUS_6             0              21
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MTIF3 MUTATED        1      1      0      1      0      0      0
  MTIF3 WILD-TYPE     41     25     12     23      8     23     12
D49V6, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             1              25
  CLUS_3             0              12
  CLUS_4             1              23
  CLUS_5             0               8
  CLUS_6             0              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF3 MUTATED        2      0      1
  MTIF3 WILD-TYPE     48     56     40
D49V7, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             0              56
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF3 MUTATED        2      0      1
  MTIF3 WILD-TYPE     66     38     40
D49V8, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             0              38
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF3 MUTATED        2      0      1
  MTIF3 WILD-TYPE     65     36     43
D49V9, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             0              36
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MTIF3 MUTATED        1      1      0      1      0      0
  MTIF3 WILD-TYPE     32     34     19     26     19     14
D49V10, multiclass
        clus
vv       MTIF3 MUTATED MTIF3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              34
  CLUS_3             0              19
  CLUS_4             1              26
  CLUS_5             0              19
  CLUS_6             0              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = BTN2A2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTN2A2 MUTATED        2      1      0      0
  BTN2A2 WILD-TYPE     45     31     54     14
D50V1, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               31
  CLUS_3              0               54
  CLUS_4              0               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTN2A2 MUTATED        2      0      0      1
  BTN2A2 WILD-TYPE     41     20     34     49
D50V2, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              2               41
  CLUS_2              0               20
  CLUS_3              0               34
  CLUS_4              1               49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTN2A2 MUTATED        0      0      1      0      0
  BTN2A2 WILD-TYPE     44      8      9     36     18
D50V3, multiclass
[1] "Remove cluster labels:" "BTN2A2 MUTATED"        
clus
  BTN2A2 MUTATED BTN2A2 WILD-TYPE 
               1              115 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAGN       TCGA-2G-AAGO       TCGA-2G-AAGS       TCGA-2G-AAGT 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGX       TCGA-2G-AAGY 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3       TCGA-2G-AAH4 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC       TCGA-2G-AAHG 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-4K-AA1I       TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-SN-A6IS       TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-VF-A8AA       TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-X3-A8G4       TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-XE-AANI       TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-XE-AAO3       TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-XE-AAOC       TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-XE-AAOL       TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-YU-A90Q       TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-YU-A912       TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-ZM-AA0B       TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTN2A2 MUTATED        0      1      0
  BTN2A2 WILD-TYPE     50     23     42
D50V4, multiclass
[1] "Remove cluster labels:" "BTN2A2 MUTATED"        
clus
  BTN2A2 MUTATED BTN2A2 WILD-TYPE 
               1              115 
      TCGA-2G-AAEW       TCGA-2G-AAEX       TCGA-2G-AAF1       TCGA-2G-AAF4 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAF6       TCGA-2G-AAF8       TCGA-2G-AAFG       TCGA-2G-AAFI 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAFJ       TCGA-2G-AAFL       TCGA-2G-AAFM       TCGA-2G-AAFN 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAFY       TCGA-2G-AAFZ       TCGA-2G-AAG0       TCGA-2G-AAG3 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAG5       TCGA-2G-AAG6       TCGA-2G-AAG7       TCGA-2G-AAG8 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAG9       TCGA-2G-AAGC       TCGA-2G-AAGF       TCGA-2G-AAGG 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAGI       TCGA-2G-AAGJ       TCGA-2G-AAGK       TCGA-2G-AAGM 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAGN       TCGA-2G-AAGO       TCGA-2G-AAGS       TCGA-2G-AAGT 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAGV       TCGA-2G-AAGW       TCGA-2G-AAGX       TCGA-2G-AAGY 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAGZ       TCGA-2G-AAH0       TCGA-2G-AAH3       TCGA-2G-AAH4 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAH8       TCGA-2G-AAHA       TCGA-2G-AAHC       TCGA-2G-AAHG 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAHL       TCGA-2G-AAHP       TCGA-2G-AAHT       TCGA-2G-AAKG 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAKH       TCGA-2G-AAKL       TCGA-2G-AAKM       TCGA-2G-AAKO 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AAL5       TCGA-2G-AAL7       TCGA-2G-AALF       TCGA-2G-AALG 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AALN       TCGA-2G-AALO       TCGA-2G-AALP       TCGA-2G-AALQ 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AALS       TCGA-2G-AALT       TCGA-2G-AALW       TCGA-2G-AALX 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2G-AALZ       TCGA-2G-AAM2       TCGA-2G-AAM3       TCGA-2G-AAM4 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-2X-A9D5       TCGA-2X-A9D6       TCGA-4K-AA1G       TCGA-4K-AA1H 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-4K-AA1I       TCGA-S6-A8JW       TCGA-S6-A8JX       TCGA-S6-A8JY 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-SN-A6IS       TCGA-SN-A84X       TCGA-SO-A8JP       TCGA-VF-A8A8 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-VF-A8AA       TCGA-VF-A8AE       TCGA-W4-A7U2       TCGA-W4-A7U4 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-X3-A8G4       TCGA-XE-A8H1       TCGA-XE-A8H5       TCGA-XE-A9SE 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-XE-AANI       TCGA-XE-AANJ       TCGA-XE-AANR       TCGA-XE-AANV 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-XE-AAO3       TCGA-XE-AAO4       TCGA-XE-AAO6       TCGA-XE-AAOB 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-XE-AAOC       TCGA-XE-AAOD       TCGA-XE-AAOF       TCGA-XE-AAOJ 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-XE-AAOL       TCGA-XY-A89B       TCGA-XY-A9T9       TCGA-YU-A90P 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-YU-A90Q       TCGA-YU-A90S       TCGA-YU-A90W       TCGA-YU-A90Y 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-YU-A912       TCGA-YU-A94I       TCGA-YU-AA61       TCGA-ZM-AA05 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
      TCGA-ZM-AA0B       TCGA-ZM-AA0D       TCGA-ZM-AA0E 
"BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" "BTN2A2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BTN2A2 MUTATED        1      0      0      1      1      0      0
  BTN2A2 WILD-TYPE     32     29     33     21      7     21      1
D50V5, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               29
  CLUS_3              0               33
  CLUS_4              1               21
  CLUS_5              1                7
  CLUS_6              0               21
  CLUS_7              0                1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BTN2A2 MUTATED        2      0      0      1      0      0      0
  BTN2A2 WILD-TYPE     40     26     12     23      8     23     12
D50V6, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              2               40
  CLUS_2              0               26
  CLUS_3              0               12
  CLUS_4              1               23
  CLUS_5              0                8
  CLUS_6              0               23
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTN2A2 MUTATED        2      0      1
  BTN2A2 WILD-TYPE     48     56     40
D50V7, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              2               48
  CLUS_2              0               56
  CLUS_3              1               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTN2A2 MUTATED        2      0      1
  BTN2A2 WILD-TYPE     66     38     40
D50V8, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              2               66
  CLUS_2              0               38
  CLUS_3              1               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTN2A2 MUTATED        2      0      1
  BTN2A2 WILD-TYPE     65     36     43
D50V9, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              2               65
  CLUS_2              0               36
  CLUS_3              1               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTN2A2 MUTATED        1      1      0      0      0      1
  BTN2A2 WILD-TYPE     32     34     19     27     19     13
D50V10, multiclass
        clus
vv       BTN2A2 MUTATED BTN2A2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               34
  CLUS_3              0               19
  CLUS_4              0               27
  CLUS_5              0               19
  CLUS_6              1               13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = C17ORF64 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF64 MUTATED        1      0      2      0
  C17ORF64 WILD-TYPE     46     32     52     14
D51V1, multiclass
        clus
vv       C17ORF64 MUTATED C17ORF64 WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                0                 32
  CLUS_3                2                 52
  CLUS_4                0                 14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF64 MUTATED        1      0      0      2
  C17ORF64 WILD-TYPE     42     20     34     48
D51V2, multiclass
        clus
vv       C17ORF64 MUTATED C17ORF64 WILD-TYPE
  CLUS_1                1                 42
  CLUS_2                0                 20
  CLUS_3                0                 34
  CLUS_4                2                 48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C17ORF64 MUTATED        1      1      0      0      0
  C17ORF64 WILD-TYPE     43      7     10     36     18
D51V3, multiclass
[1] "Remove cluster labels:" "C17ORF64 MUTATED"      
clus
  C17ORF64 MUTATED C17ORF64 WILD-TYPE 
                 2                114 
        TCGA-2G-AAEW         TCGA-2G-AAEX         TCGA-2G-AAF1 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAF4         TCGA-2G-AAF6         TCGA-2G-AAF8 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAFG         TCGA-2G-AAFI         TCGA-2G-AAFJ 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAFL         TCGA-2G-AAFM         TCGA-2G-AAFN 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAFY         TCGA-2G-AAFZ         TCGA-2G-AAG0 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAG3         TCGA-2G-AAG5         TCGA-2G-AAG6 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAG7         TCGA-2G-AAG8         TCGA-2G-AAG9 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAGC         TCGA-2G-AAGF         TCGA-2G-AAGG 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAGI         TCGA-2G-AAGJ         TCGA-2G-AAGK 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAGM         TCGA-2G-AAGN         TCGA-2G-AAGO 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAGP         TCGA-2G-AAGS         TCGA-2G-AAGT 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAGV         TCGA-2G-AAGW         TCGA-2G-AAGX 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAGY         TCGA-2G-AAGZ         TCGA-2G-AAH0 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAH3         TCGA-2G-AAH4         TCGA-2G-AAH8 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAHA         TCGA-2G-AAHC         TCGA-2G-AAHG 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAHL         TCGA-2G-AAHP         TCGA-2G-AAHT 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAKG         TCGA-2G-AAKH         TCGA-2G-AAKL 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAKM         TCGA-2G-AAKO         TCGA-2G-AAL5 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAL7         TCGA-2G-AALF         TCGA-2G-AALG 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AALN         TCGA-2G-AALO         TCGA-2G-AALP 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AALQ         TCGA-2G-AALT         TCGA-2G-AALW 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AALX         TCGA-2G-AALZ         TCGA-2G-AAM2 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAM3         TCGA-2G-AAM4         TCGA-2X-A9D5 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2X-A9D6         TCGA-4K-AA1G         TCGA-4K-AA1H 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-4K-AA1I         TCGA-S6-A8JW         TCGA-S6-A8JY 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-SN-A6IS         TCGA-SN-A84X         TCGA-SO-A8JP 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-VF-A8A8         TCGA-VF-A8AA         TCGA-VF-A8AE 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-W4-A7U2         TCGA-W4-A7U4         TCGA-X3-A8G4 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-XE-A8H1         TCGA-XE-A8H5         TCGA-XE-A9SE 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-XE-AANI         TCGA-XE-AANJ         TCGA-XE-AANR 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-XE-AANV         TCGA-XE-AAO3         TCGA-XE-AAO4 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-XE-AAO6         TCGA-XE-AAOB         TCGA-XE-AAOC 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-XE-AAOD         TCGA-XE-AAOF         TCGA-XE-AAOJ 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-XE-AAOL         TCGA-XY-A89B         TCGA-XY-A9T9 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-YU-A90P         TCGA-YU-A90Q         TCGA-YU-A90S 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-YU-A90W         TCGA-YU-A90Y         TCGA-YU-A912 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-YU-A94I         TCGA-YU-AA61         TCGA-ZM-AA05 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-ZM-AA0B         TCGA-ZM-AA0D         TCGA-ZM-AA0E 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF64 MUTATED        1      0      1
  C17ORF64 WILD-TYPE     49     24     41
D51V4, multiclass
[1] "Remove cluster labels:" "C17ORF64 MUTATED"      
clus
  C17ORF64 MUTATED C17ORF64 WILD-TYPE 
                 2                114 
        TCGA-2G-AAEW         TCGA-2G-AAEX         TCGA-2G-AAF1 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAF4         TCGA-2G-AAF6         TCGA-2G-AAF8 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAFG         TCGA-2G-AAFI         TCGA-2G-AAFJ 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAFL         TCGA-2G-AAFM         TCGA-2G-AAFN 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAFY         TCGA-2G-AAFZ         TCGA-2G-AAG0 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAG3         TCGA-2G-AAG5         TCGA-2G-AAG6 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAG7         TCGA-2G-AAG8         TCGA-2G-AAG9 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAGC         TCGA-2G-AAGF         TCGA-2G-AAGG 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAGI         TCGA-2G-AAGJ         TCGA-2G-AAGK 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAGM         TCGA-2G-AAGN         TCGA-2G-AAGO 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAGP         TCGA-2G-AAGS         TCGA-2G-AAGT 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAGV         TCGA-2G-AAGW         TCGA-2G-AAGX 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAGY         TCGA-2G-AAGZ         TCGA-2G-AAH0 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAH3         TCGA-2G-AAH4         TCGA-2G-AAH8 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAHA         TCGA-2G-AAHC         TCGA-2G-AAHG 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAHL         TCGA-2G-AAHP         TCGA-2G-AAHT 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAKG         TCGA-2G-AAKH         TCGA-2G-AAKL 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAKM         TCGA-2G-AAKO         TCGA-2G-AAL5 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAL7         TCGA-2G-AALF         TCGA-2G-AALG 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AALN         TCGA-2G-AALO         TCGA-2G-AALP 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AALQ         TCGA-2G-AALT         TCGA-2G-AALW 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AALX         TCGA-2G-AALZ         TCGA-2G-AAM2 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2G-AAM3         TCGA-2G-AAM4         TCGA-2X-A9D5 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-2X-A9D6         TCGA-4K-AA1G         TCGA-4K-AA1H 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-4K-AA1I         TCGA-S6-A8JW         TCGA-S6-A8JY 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-SN-A6IS         TCGA-SN-A84X         TCGA-SO-A8JP 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-VF-A8A8         TCGA-VF-A8AA         TCGA-VF-A8AE 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-W4-A7U2         TCGA-W4-A7U4         TCGA-X3-A8G4 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-XE-A8H1         TCGA-XE-A8H5         TCGA-XE-A9SE 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-XE-AANI         TCGA-XE-AANJ         TCGA-XE-AANR 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-XE-AANV         TCGA-XE-AAO3         TCGA-XE-AAO4 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-XE-AAO6         TCGA-XE-AAOB         TCGA-XE-AAOC 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-XE-AAOD         TCGA-XE-AAOF         TCGA-XE-AAOJ 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-XE-AAOL         TCGA-XY-A89B         TCGA-XY-A9T9 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-YU-A90P         TCGA-YU-A90Q         TCGA-YU-A90S 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-YU-A90W         TCGA-YU-A90Y         TCGA-YU-A912 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-YU-A94I         TCGA-YU-AA61         TCGA-ZM-AA05 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
        TCGA-ZM-AA0B         TCGA-ZM-AA0D         TCGA-ZM-AA0E 
"C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" "C17ORF64 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C17ORF64 MUTATED        0      1      1      1      0      0      0
  C17ORF64 WILD-TYPE     33     28     32     21      8     21      1
D51V5, multiclass
        clus
vv       C17ORF64 MUTATED C17ORF64 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                1                 28
  CLUS_3                1                 32
  CLUS_4                1                 21
  CLUS_5                0                  8
  CLUS_6                0                 21
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  C17ORF64 MUTATED        0      1      1      1      0      0      0
  C17ORF64 WILD-TYPE     42     25     11     23      8     23     12
D51V6, multiclass
        clus
vv       C17ORF64 MUTATED C17ORF64 WILD-TYPE
  CLUS_1                0                 42
  CLUS_2                1                 25
  CLUS_3                1                 11
  CLUS_4                1                 23
  CLUS_5                0                  8
  CLUS_6                0                 23
  CLUS_7                0                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF64 MUTATED        1      1      1
  C17ORF64 WILD-TYPE     49     55     40
D51V7, multiclass
        clus
vv       C17ORF64 MUTATED C17ORF64 WILD-TYPE
  CLUS_1                1                 49
  CLUS_2                1                 55
  CLUS_3                1                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF64 MUTATED        1      1      1
  C17ORF64 WILD-TYPE     67     37     40
D51V8, multiclass
        clus
vv       C17ORF64 MUTATED C17ORF64 WILD-TYPE
  CLUS_1                1                 67
  CLUS_2                1                 37
  CLUS_3                1                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF64 MUTATED        1      0      2
  C17ORF64 WILD-TYPE     66     36     42
D51V9, multiclass
        clus
vv       C17ORF64 MUTATED C17ORF64 WILD-TYPE
  CLUS_1                1                 66
  CLUS_2                0                 36
  CLUS_3                2                 42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C17ORF64 MUTATED        0      1      0      1      0      1
  C17ORF64 WILD-TYPE     33     34     19     26     19     13
D51V10, multiclass
        clus
vv       C17ORF64 MUTATED C17ORF64 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                1                 34
  CLUS_3                0                 19
  CLUS_4                1                 26
  CLUS_5                0                 19
  CLUS_6                1                 13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = RUNX2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX2 MUTATED        0      2      2      0
  RUNX2 WILD-TYPE     47     30     52     14
D52V1, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             2              30
  CLUS_3             2              52
  CLUS_4             0              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUNX2 MUTATED        1      0      1      2
  RUNX2 WILD-TYPE     42     20     33     48
D52V2, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             1              42
  CLUS_2             0              20
  CLUS_3             1              33
  CLUS_4             2              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUNX2 MUTATED        1      0      0      1      1
  RUNX2 WILD-TYPE     43      8     10     35     17
D52V3, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             1              35
  CLUS_5             1              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        1      0      2
  RUNX2 WILD-TYPE     49     24     40
D52V4, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             1              49
  CLUS_2             0              24
  CLUS_3             2              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RUNX2 MUTATED        1      1      1      1      0      0      0
  RUNX2 WILD-TYPE     32     28     32     21      8     21      1
D52V5, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              28
  CLUS_3             1              32
  CLUS_4             1              21
  CLUS_5             0               8
  CLUS_6             0              21
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RUNX2 MUTATED        1      1      0      1      0      1      0
  RUNX2 WILD-TYPE     41     25     12     23      8     22     12
D52V6, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             1              25
  CLUS_3             0              12
  CLUS_4             1              23
  CLUS_5             0               8
  CLUS_6             1              22
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        2      1      1
  RUNX2 WILD-TYPE     48     55     40
D52V7, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             1              55
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        2      1      1
  RUNX2 WILD-TYPE     66     37     40
D52V8, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             1              37
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUNX2 MUTATED        2      1      1
  RUNX2 WILD-TYPE     65     35     43
D52V9, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             1              35
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RUNX2 MUTATED        0      2      1      1      0      0
  RUNX2 WILD-TYPE     33     33     18     26     19     14
D52V10, multiclass
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              33
  CLUS_3             1              18
  CLUS_4             1              26
  CLUS_5             0              19
  CLUS_6             0              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = SSBP3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSBP3 MUTATED        1      0      2      0
  SSBP3 WILD-TYPE     46     32     52     14
D53V1, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              32
  CLUS_3             2              52
  CLUS_4             0              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SSBP3 MUTATED        1      0      1      1
  SSBP3 WILD-TYPE     42     20     33     49
D53V2, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             1              42
  CLUS_2             0              20
  CLUS_3             1              33
  CLUS_4             1              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SSBP3 MUTATED        0      0      0      0      2
  SSBP3 WILD-TYPE     44      8     10     36     16
D53V3, multiclass
[1] "Remove cluster labels:" "SSBP3 MUTATED"         
clus
  SSBP3 MUTATED SSBP3 WILD-TYPE 
              2             114 
     TCGA-2G-AAEW      TCGA-2G-AAEX      TCGA-2G-AAF1      TCGA-2G-AAF4 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAF6      TCGA-2G-AAF8      TCGA-2G-AAFG      TCGA-2G-AAFI 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAFJ      TCGA-2G-AAFL      TCGA-2G-AAFN      TCGA-2G-AAFY 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAFZ      TCGA-2G-AAG0      TCGA-2G-AAG3      TCGA-2G-AAG5 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAG6      TCGA-2G-AAG7      TCGA-2G-AAG8      TCGA-2G-AAG9 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGC      TCGA-2G-AAGF      TCGA-2G-AAGG      TCGA-2G-AAGI 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGJ      TCGA-2G-AAGK      TCGA-2G-AAGM      TCGA-2G-AAGN 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGO      TCGA-2G-AAGP      TCGA-2G-AAGS      TCGA-2G-AAGT 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGV      TCGA-2G-AAGW      TCGA-2G-AAGX      TCGA-2G-AAGY 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGZ      TCGA-2G-AAH0      TCGA-2G-AAH3      TCGA-2G-AAH4 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAH8      TCGA-2G-AAHA      TCGA-2G-AAHC      TCGA-2G-AAHG 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAHL      TCGA-2G-AAHP      TCGA-2G-AAHT      TCGA-2G-AAKG 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAKH      TCGA-2G-AAKL      TCGA-2G-AAKM      TCGA-2G-AAKO 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAL5      TCGA-2G-AAL7      TCGA-2G-AALF      TCGA-2G-AALG 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AALN      TCGA-2G-AALO      TCGA-2G-AALP      TCGA-2G-AALQ 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AALS      TCGA-2G-AALT      TCGA-2G-AALW      TCGA-2G-AALX 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AALZ      TCGA-2G-AAM2      TCGA-2G-AAM3      TCGA-2G-AAM4 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2X-A9D5      TCGA-2X-A9D6      TCGA-4K-AA1G      TCGA-4K-AA1H 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-4K-AA1I      TCGA-S6-A8JW      TCGA-S6-A8JX      TCGA-S6-A8JY 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-SN-A6IS      TCGA-SN-A84X      TCGA-SO-A8JP      TCGA-VF-A8A8 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-VF-A8AA      TCGA-VF-A8AE      TCGA-W4-A7U2      TCGA-W4-A7U4 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-X3-A8G4      TCGA-XE-A8H1      TCGA-XE-A8H5      TCGA-XE-A9SE 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XE-AANI      TCGA-XE-AANJ      TCGA-XE-AANR      TCGA-XE-AANV 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XE-AAO3      TCGA-XE-AAO4      TCGA-XE-AAO6      TCGA-XE-AAOB 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XE-AAOC      TCGA-XE-AAOD      TCGA-XE-AAOF      TCGA-XE-AAOJ 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XE-AAOL      TCGA-XY-A89B      TCGA-XY-A9T9      TCGA-YU-A90Q 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-YU-A90S      TCGA-YU-A90W      TCGA-YU-A90Y      TCGA-YU-A912 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-YU-A94I      TCGA-YU-AA61      TCGA-ZM-AA05      TCGA-ZM-AA0B 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-ZM-AA0D      TCGA-ZM-AA0E 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        0      0      2
  SSBP3 WILD-TYPE     50     24     40
D53V4, multiclass
[1] "Remove cluster labels:" "SSBP3 MUTATED"         
clus
  SSBP3 MUTATED SSBP3 WILD-TYPE 
              2             114 
     TCGA-2G-AAEW      TCGA-2G-AAEX      TCGA-2G-AAF1      TCGA-2G-AAF4 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAF6      TCGA-2G-AAF8      TCGA-2G-AAFG      TCGA-2G-AAFI 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAFJ      TCGA-2G-AAFL      TCGA-2G-AAFN      TCGA-2G-AAFY 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAFZ      TCGA-2G-AAG0      TCGA-2G-AAG3      TCGA-2G-AAG5 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAG6      TCGA-2G-AAG7      TCGA-2G-AAG8      TCGA-2G-AAG9 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGC      TCGA-2G-AAGF      TCGA-2G-AAGG      TCGA-2G-AAGI 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGJ      TCGA-2G-AAGK      TCGA-2G-AAGM      TCGA-2G-AAGN 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGO      TCGA-2G-AAGP      TCGA-2G-AAGS      TCGA-2G-AAGT 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGV      TCGA-2G-AAGW      TCGA-2G-AAGX      TCGA-2G-AAGY 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAGZ      TCGA-2G-AAH0      TCGA-2G-AAH3      TCGA-2G-AAH4 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAH8      TCGA-2G-AAHA      TCGA-2G-AAHC      TCGA-2G-AAHG 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAHL      TCGA-2G-AAHP      TCGA-2G-AAHT      TCGA-2G-AAKG 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAKH      TCGA-2G-AAKL      TCGA-2G-AAKM      TCGA-2G-AAKO 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AAL5      TCGA-2G-AAL7      TCGA-2G-AALF      TCGA-2G-AALG 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AALN      TCGA-2G-AALO      TCGA-2G-AALP      TCGA-2G-AALQ 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AALS      TCGA-2G-AALT      TCGA-2G-AALW      TCGA-2G-AALX 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2G-AALZ      TCGA-2G-AAM2      TCGA-2G-AAM3      TCGA-2G-AAM4 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-2X-A9D5      TCGA-2X-A9D6      TCGA-4K-AA1G      TCGA-4K-AA1H 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-4K-AA1I      TCGA-S6-A8JW      TCGA-S6-A8JX      TCGA-S6-A8JY 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-SN-A6IS      TCGA-SN-A84X      TCGA-SO-A8JP      TCGA-VF-A8A8 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-VF-A8AA      TCGA-VF-A8AE      TCGA-W4-A7U2      TCGA-W4-A7U4 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-X3-A8G4      TCGA-XE-A8H1      TCGA-XE-A8H5      TCGA-XE-A9SE 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XE-AANI      TCGA-XE-AANJ      TCGA-XE-AANR      TCGA-XE-AANV 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XE-AAO3      TCGA-XE-AAO4      TCGA-XE-AAO6      TCGA-XE-AAOB 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XE-AAOC      TCGA-XE-AAOD      TCGA-XE-AAOF      TCGA-XE-AAOJ 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-XE-AAOL      TCGA-XY-A89B      TCGA-XY-A9T9      TCGA-YU-A90Q 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-YU-A90S      TCGA-YU-A90W      TCGA-YU-A90Y      TCGA-YU-A912 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-YU-A94I      TCGA-YU-AA61      TCGA-ZM-AA05      TCGA-ZM-AA0B 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
     TCGA-ZM-AA0D      TCGA-ZM-AA0E 
"SSBP3 WILD-TYPE" "SSBP3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SSBP3 MUTATED        0      0      2      0      0      1      0
  SSBP3 WILD-TYPE     33     29     31     22      8     20      1
D53V5, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              29
  CLUS_3             2              31
  CLUS_4             0              22
  CLUS_5             0               8
  CLUS_6             1              20
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SSBP3 MUTATED        0      0      0      0      1      1      1
  SSBP3 WILD-TYPE     42     26     12     24      7     22     11
D53V6, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              42
  CLUS_2             0              26
  CLUS_3             0              12
  CLUS_4             0              24
  CLUS_5             1               7
  CLUS_6             1              22
  CLUS_7             1              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        0      2      1
  SSBP3 WILD-TYPE     50     54     40
D53V7, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              50
  CLUS_2             2              54
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        0      2      1
  SSBP3 WILD-TYPE     68     36     40
D53V8, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              68
  CLUS_2             2              36
  CLUS_3             1              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SSBP3 MUTATED        0      2      1
  SSBP3 WILD-TYPE     67     34     43
D53V9, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              67
  CLUS_2             2              34
  CLUS_3             1              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SSBP3 MUTATED        0      0      0      1      2      0
  SSBP3 WILD-TYPE     33     35     19     26     17     14
D53V10, multiclass
        clus
vv       SSBP3 MUTATED SSBP3 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              35
  CLUS_3             0              19
  CLUS_4             1              26
  CLUS_5             2              17
  CLUS_6             0              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = GSX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSX2 MUTATED        0      0      3      1
  GSX2 WILD-TYPE     47     32     51     13
D54V1, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            0             47
  CLUS_2            0             32
  CLUS_3            3             51
  CLUS_4            1             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GSX2 MUTATED        0      1      1      2
  GSX2 WILD-TYPE     43     19     33     48
D54V2, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            0             43
  CLUS_2            1             19
  CLUS_3            1             33
  CLUS_4            2             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GSX2 MUTATED        1      0      0      3      0
  GSX2 WILD-TYPE     43      8     10     33     18
D54V3, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            3             33
  CLUS_5            0             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GSX2 MUTATED        1      3      0
  GSX2 WILD-TYPE     49     21     42
D54V4, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            1             49
  CLUS_2            3             21
  CLUS_3            0             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GSX2 MUTATED        0      1      0      0      0      3      0
  GSX2 WILD-TYPE     33     28     33     22      8     18      1
D54V5, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             28
  CLUS_3            0             33
  CLUS_4            0             22
  CLUS_5            0              8
  CLUS_6            3             18
  CLUS_7            0              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GSX2 MUTATED        0      1      1      2      0      0      0
  GSX2 WILD-TYPE     42     25     11     22      8     23     12
D54V6, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            0             42
  CLUS_2            1             25
  CLUS_3            1             11
  CLUS_4            2             22
  CLUS_5            0              8
  CLUS_6            0             23
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GSX2 MUTATED        1      0      3
  GSX2 WILD-TYPE     49     56     38
D54V7, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            1             49
  CLUS_2            0             56
  CLUS_3            3             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GSX2 MUTATED        1      0      3
  GSX2 WILD-TYPE     67     38     38
D54V8, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            1             67
  CLUS_2            0             38
  CLUS_3            3             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GSX2 MUTATED        1      1      2
  GSX2 WILD-TYPE     66     35     42
D54V9, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            1             66
  CLUS_2            1             35
  CLUS_3            2             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GSX2 MUTATED        0      1      1      1      0      1
  GSX2 WILD-TYPE     33     34     18     26     19     13
D54V10, multiclass
        clus
vv       GSX2 MUTATED GSX2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             34
  CLUS_3            1             18
  CLUS_4            1             26
  CLUS_5            0             19
  CLUS_6            1             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = SP4 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP4 MUTATED        0      0      3      1
  SP4 WILD-TYPE     47     32     51     13
D55V1, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           0            47
  CLUS_2           0            32
  CLUS_3           3            51
  CLUS_4           1            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP4 MUTATED        0      0      3      1
  SP4 WILD-TYPE     43     20     31     49
D55V2, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           0            43
  CLUS_2           0            20
  CLUS_3           3            31
  CLUS_4           1            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SP4 MUTATED        0      0      0      2      0
  SP4 WILD-TYPE     44      8     10     34     18
D55V3, multiclass
[1] "Remove cluster labels:" "SP4 MUTATED"           
clus
  SP4 MUTATED SP4 WILD-TYPE 
            2           114 
   TCGA-2G-AAEW    TCGA-2G-AAEX    TCGA-2G-AAF1    TCGA-2G-AAF4    TCGA-2G-AAF6 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAF8    TCGA-2G-AAFG    TCGA-2G-AAFI    TCGA-2G-AAFJ    TCGA-2G-AAFL 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAFM    TCGA-2G-AAFN    TCGA-2G-AAFY    TCGA-2G-AAFZ    TCGA-2G-AAG0 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAG3    TCGA-2G-AAG5    TCGA-2G-AAG6    TCGA-2G-AAG7    TCGA-2G-AAG8 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAG9    TCGA-2G-AAGC    TCGA-2G-AAGF    TCGA-2G-AAGG    TCGA-2G-AAGI 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAGJ    TCGA-2G-AAGK    TCGA-2G-AAGM    TCGA-2G-AAGN    TCGA-2G-AAGO 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAGP    TCGA-2G-AAGS    TCGA-2G-AAGT    TCGA-2G-AAGV    TCGA-2G-AAGW 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAGX    TCGA-2G-AAGY    TCGA-2G-AAGZ    TCGA-2G-AAH0    TCGA-2G-AAH3 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAH4    TCGA-2G-AAH8    TCGA-2G-AAHA    TCGA-2G-AAHC    TCGA-2G-AAHG 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAHL    TCGA-2G-AAHP    TCGA-2G-AAHT    TCGA-2G-AAKH    TCGA-2G-AAKL 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAKM    TCGA-2G-AAKO    TCGA-2G-AAL5    TCGA-2G-AAL7    TCGA-2G-AALF 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AALG    TCGA-2G-AALN    TCGA-2G-AALP    TCGA-2G-AALQ    TCGA-2G-AALS 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AALT    TCGA-2G-AALW    TCGA-2G-AALX    TCGA-2G-AALZ    TCGA-2G-AAM2 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAM3    TCGA-2G-AAM4    TCGA-2X-A9D5    TCGA-2X-A9D6    TCGA-4K-AA1G 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-4K-AA1H    TCGA-4K-AA1I    TCGA-S6-A8JW    TCGA-S6-A8JX    TCGA-S6-A8JY 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-SN-A6IS    TCGA-SN-A84X    TCGA-SO-A8JP    TCGA-VF-A8A8    TCGA-VF-A8AA 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-VF-A8AE    TCGA-W4-A7U2    TCGA-W4-A7U4    TCGA-X3-A8G4    TCGA-XE-A8H1 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-XE-A8H5    TCGA-XE-A9SE    TCGA-XE-AANI    TCGA-XE-AANJ    TCGA-XE-AANR 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-XE-AANV    TCGA-XE-AAO3    TCGA-XE-AAO4    TCGA-XE-AAO6    TCGA-XE-AAOB 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-XE-AAOC    TCGA-XE-AAOD    TCGA-XE-AAOF    TCGA-XE-AAOJ    TCGA-XE-AAOL 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-XY-A89B    TCGA-XY-A9T9    TCGA-YU-A90P    TCGA-YU-A90Q    TCGA-YU-A90S 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-YU-A90W    TCGA-YU-A90Y    TCGA-YU-A912    TCGA-YU-A94I    TCGA-YU-AA61 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-ZM-AA05    TCGA-ZM-AA0B    TCGA-ZM-AA0D    TCGA-ZM-AA0E 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP4 MUTATED        0      1      1
  SP4 WILD-TYPE     50     23     41
D55V4, multiclass
[1] "Remove cluster labels:" "SP4 MUTATED"           
clus
  SP4 MUTATED SP4 WILD-TYPE 
            2           114 
   TCGA-2G-AAEW    TCGA-2G-AAEX    TCGA-2G-AAF1    TCGA-2G-AAF4    TCGA-2G-AAF6 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAF8    TCGA-2G-AAFG    TCGA-2G-AAFI    TCGA-2G-AAFJ    TCGA-2G-AAFL 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAFM    TCGA-2G-AAFN    TCGA-2G-AAFY    TCGA-2G-AAFZ    TCGA-2G-AAG0 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAG3    TCGA-2G-AAG5    TCGA-2G-AAG6    TCGA-2G-AAG7    TCGA-2G-AAG8 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAG9    TCGA-2G-AAGC    TCGA-2G-AAGF    TCGA-2G-AAGG    TCGA-2G-AAGI 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAGJ    TCGA-2G-AAGK    TCGA-2G-AAGM    TCGA-2G-AAGN    TCGA-2G-AAGO 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAGP    TCGA-2G-AAGS    TCGA-2G-AAGT    TCGA-2G-AAGV    TCGA-2G-AAGW 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAGX    TCGA-2G-AAGY    TCGA-2G-AAGZ    TCGA-2G-AAH0    TCGA-2G-AAH3 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAH4    TCGA-2G-AAH8    TCGA-2G-AAHA    TCGA-2G-AAHC    TCGA-2G-AAHG 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAHL    TCGA-2G-AAHP    TCGA-2G-AAHT    TCGA-2G-AAKH    TCGA-2G-AAKL 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAKM    TCGA-2G-AAKO    TCGA-2G-AAL5    TCGA-2G-AAL7    TCGA-2G-AALF 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AALG    TCGA-2G-AALN    TCGA-2G-AALP    TCGA-2G-AALQ    TCGA-2G-AALS 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AALT    TCGA-2G-AALW    TCGA-2G-AALX    TCGA-2G-AALZ    TCGA-2G-AAM2 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-2G-AAM3    TCGA-2G-AAM4    TCGA-2X-A9D5    TCGA-2X-A9D6    TCGA-4K-AA1G 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-4K-AA1H    TCGA-4K-AA1I    TCGA-S6-A8JW    TCGA-S6-A8JX    TCGA-S6-A8JY 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-SN-A6IS    TCGA-SN-A84X    TCGA-SO-A8JP    TCGA-VF-A8A8    TCGA-VF-A8AA 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-VF-A8AE    TCGA-W4-A7U2    TCGA-W4-A7U4    TCGA-X3-A8G4    TCGA-XE-A8H1 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-XE-A8H5    TCGA-XE-A9SE    TCGA-XE-AANI    TCGA-XE-AANJ    TCGA-XE-AANR 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-XE-AANV    TCGA-XE-AAO3    TCGA-XE-AAO4    TCGA-XE-AAO6    TCGA-XE-AAOB 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-XE-AAOC    TCGA-XE-AAOD    TCGA-XE-AAOF    TCGA-XE-AAOJ    TCGA-XE-AAOL 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-XY-A89B    TCGA-XY-A9T9    TCGA-YU-A90P    TCGA-YU-A90Q    TCGA-YU-A90S 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-YU-A90W    TCGA-YU-A90Y    TCGA-YU-A912    TCGA-YU-A94I    TCGA-YU-AA61 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
   TCGA-ZM-AA05    TCGA-ZM-AA0B    TCGA-ZM-AA0D    TCGA-ZM-AA0E 
"SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" "SP4 WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SP4 MUTATED        0      0      2      0      0      2      0
  SP4 WILD-TYPE     33     29     31     22      8     19      1
D55V5, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           0            33
  CLUS_2           0            29
  CLUS_3           2            31
  CLUS_4           0            22
  CLUS_5           0             8
  CLUS_6           2            19
  CLUS_7           0             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SP4 MUTATED        0      0      1      1      1      1      0
  SP4 WILD-TYPE     42     26     11     23      7     22     12
D55V6, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           0            42
  CLUS_2           0            26
  CLUS_3           1            11
  CLUS_4           1            23
  CLUS_5           1             7
  CLUS_6           1            22
  CLUS_7           0            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP4 MUTATED        0      3      1
  SP4 WILD-TYPE     50     53     40
D55V7, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           0            50
  CLUS_2           3            53
  CLUS_3           1            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP4 MUTATED        0      3      1
  SP4 WILD-TYPE     68     35     40
D55V8, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           0            68
  CLUS_2           3            35
  CLUS_3           1            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SP4 MUTATED        0      3      1
  SP4 WILD-TYPE     67     33     43
D55V9, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           0            67
  CLUS_2           3            33
  CLUS_3           1            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SP4 MUTATED        0      0      2      1      1      0
  SP4 WILD-TYPE     33     35     17     26     18     14
D55V10, multiclass
        clus
vv       SP4 MUTATED SP4 WILD-TYPE
  CLUS_1           0            33
  CLUS_2           0            35
  CLUS_3           2            17
  CLUS_4           1            26
  CLUS_5           1            18
  CLUS_6           0            14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = PCMTD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCMTD1 MUTATED        2      2      0      1
  PCMTD1 WILD-TYPE     45     30     54     13
D56V1, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              2               30
  CLUS_3              0               54
  CLUS_4              1               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCMTD1 MUTATED        2      2      1      0
  PCMTD1 WILD-TYPE     41     18     33     50
D56V2, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              2               41
  CLUS_2              2               18
  CLUS_3              1               33
  CLUS_4              0               50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCMTD1 MUTATED        3      0      0      0      1
  PCMTD1 WILD-TYPE     41      8     10     36     17
D56V3, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              0               36
  CLUS_5              1               17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCMTD1 MUTATED        3      0      1
  PCMTD1 WILD-TYPE     47     24     41
D56V4, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              0               24
  CLUS_3              1               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCMTD1 MUTATED        1      3      1      0      0      0      0
  PCMTD1 WILD-TYPE     32     26     32     22      8     21      1
D56V5, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              3               26
  CLUS_3              1               32
  CLUS_4              0               22
  CLUS_5              0                8
  CLUS_6              0               21
  CLUS_7              0                1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PCMTD1 MUTATED        1      3      0      0      0      1      0
  PCMTD1 WILD-TYPE     41     23     12     24      8     22     12
D56V6, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              1               41
  CLUS_2              3               23
  CLUS_3              0               12
  CLUS_4              0               24
  CLUS_5              0                8
  CLUS_6              1               22
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCMTD1 MUTATED        3      2      0
  PCMTD1 WILD-TYPE     47     54     41
D56V7, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              2               54
  CLUS_3              0               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCMTD1 MUTATED        4      1      0
  PCMTD1 WILD-TYPE     64     37     41
D56V8, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              4               64
  CLUS_2              1               37
  CLUS_3              0               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCMTD1 MUTATED        4      1      0
  PCMTD1 WILD-TYPE     63     35     44
D56V9, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              4               63
  CLUS_2              1               35
  CLUS_3              0               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCMTD1 MUTATED        1      3      0      0      1      0
  PCMTD1 WILD-TYPE     32     32     19     27     18     14
D56V10, multiclass
        clus
vv       PCMTD1 MUTATED PCMTD1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              3               32
  CLUS_3              0               19
  CLUS_4              0               27
  CLUS_5              1               18
  CLUS_6              0               14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = RBM3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM3 MUTATED        0      1      0      2
  RBM3 WILD-TYPE     47     31     54     12
D57V1, multiclass
        clus
vv       RBM3 MUTATED RBM3 WILD-TYPE
  CLUS_1            0             47
  CLUS_2            1             31
  CLUS_3            0             54
  CLUS_4            2             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM3 MUTATED        1      1      1      0
  RBM3 WILD-TYPE     42     19     33     50
D57V2, multiclass
        clus
vv       RBM3 MUTATED RBM3 WILD-TYPE
  CLUS_1            1             42
  CLUS_2            1             19
  CLUS_3            1             33
  CLUS_4            0             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM3 MUTATED        0      0      0      0      0
  RBM3 WILD-TYPE     44      8     10     36     18
D57V3, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM3 MUTATED        0      0      0
  RBM3 WILD-TYPE     50     24     42
D57V4, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM3 MUTATED        1      1      1      0      0      0      0
  RBM3 WILD-TYPE     32     28     32     22      8     21      1
D57V5, multiclass
        clus
vv       RBM3 MUTATED RBM3 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             28
  CLUS_3            1             32
  CLUS_4            0             22
  CLUS_5            0              8
  CLUS_6            0             21
  CLUS_7            0              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM3 MUTATED        1      1      0      0      0      1      0
  RBM3 WILD-TYPE     41     25     12     24      8     22     12
D57V6, multiclass
        clus
vv       RBM3 MUTATED RBM3 WILD-TYPE
  CLUS_1            1             41
  CLUS_2            1             25
  CLUS_3            0             12
  CLUS_4            0             24
  CLUS_5            0              8
  CLUS_6            1             22
  CLUS_7            0             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM3 MUTATED        0      3      0
  RBM3 WILD-TYPE     50     53     41
D57V7, multiclass
        clus
vv       RBM3 MUTATED RBM3 WILD-TYPE
  CLUS_1            0             50
  CLUS_2            3             53
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM3 MUTATED        2      1      0
  RBM3 WILD-TYPE     66     37     41
D57V8, multiclass
        clus
vv       RBM3 MUTATED RBM3 WILD-TYPE
  CLUS_1            2             66
  CLUS_2            1             37
  CLUS_3            0             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM3 MUTATED        2      1      0
  RBM3 WILD-TYPE     65     35     44
D57V9, multiclass
        clus
vv       RBM3 MUTATED RBM3 WILD-TYPE
  CLUS_1            2             65
  CLUS_2            1             35
  CLUS_3            0             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBM3 MUTATED        0      2      0      0      1      0
  RBM3 WILD-TYPE     33     33     19     27     18     14
D57V10, multiclass
        clus
vv       RBM3 MUTATED RBM3 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             33
  CLUS_3            0             19
  CLUS_4            0             27
  CLUS_5            1             18
  CLUS_6            0             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = ZNF814 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF814 MUTATED        0      3      2      0
  ZNF814 WILD-TYPE     47     29     52     14
D58V1, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              0               47
  CLUS_2              3               29
  CLUS_3              2               52
  CLUS_4              0               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF814 MUTATED        1      2      1      1
  ZNF814 WILD-TYPE     42     18     33     49
D58V2, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              1               42
  CLUS_2              2               18
  CLUS_3              1               33
  CLUS_4              1               49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF814 MUTATED        3      0      0      1      1
  ZNF814 WILD-TYPE     41      8     10     35     17
D58V3, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              1               35
  CLUS_5              1               17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF814 MUTATED        3      1      1
  ZNF814 WILD-TYPE     47     23     41
D58V4, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              1               23
  CLUS_3              1               41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF814 MUTATED        0      3      1      0      0      1      0
  ZNF814 WILD-TYPE     33     26     32     22      8     20      1
D58V5, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              3               26
  CLUS_3              1               32
  CLUS_4              0               22
  CLUS_5              0                8
  CLUS_6              1               20
  CLUS_7              0                1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF814 MUTATED        0      3      0      1      0      1      0
  ZNF814 WILD-TYPE     42     23     12     23      8     22     12
D58V6, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              0               42
  CLUS_2              3               23
  CLUS_3              0               12
  CLUS_4              1               23
  CLUS_5              0                8
  CLUS_6              1               22
  CLUS_7              0               12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF814 MUTATED        1      3      1
  ZNF814 WILD-TYPE     49     53     40
D58V7, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              1               49
  CLUS_2              3               53
  CLUS_3              1               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF814 MUTATED        3      1      1
  ZNF814 WILD-TYPE     65     37     40
D58V8, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              3               65
  CLUS_2              1               37
  CLUS_3              1               40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF814 MUTATED        3      1      1
  ZNF814 WILD-TYPE     64     35     43
D58V9, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              3               64
  CLUS_2              1               35
  CLUS_3              1               43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF814 MUTATED        0      3      1      1      0      0
  ZNF814 WILD-TYPE     33     32     18     26     19     14
D58V10, multiclass
        clus
vv       ZNF814 MUTATED ZNF814 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              3               32
  CLUS_3              1               18
  CLUS_4              1               26
  CLUS_5              0               19
  CLUS_6              0               14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = TTC38 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC38 MUTATED        0      1      2      1
  TTC38 WILD-TYPE     47     31     52     13
D59V1, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             1              31
  CLUS_3             2              52
  CLUS_4             1              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTC38 MUTATED        1      0      0      3
  TTC38 WILD-TYPE     42     20     34     47
D59V2, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             1              42
  CLUS_2             0              20
  CLUS_3             0              34
  CLUS_4             3              47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTC38 MUTATED        2      0      0      2      0
  TTC38 WILD-TYPE     42      8     10     34     18
D59V3, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             2              34
  CLUS_5             0              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC38 MUTATED        2      2      0
  TTC38 WILD-TYPE     48     22     42
D59V4, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             2              22
  CLUS_3             0              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TTC38 MUTATED        1      1      0      0      0      2      0
  TTC38 WILD-TYPE     32     28     33     22      8     19      1
D59V5, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              28
  CLUS_3             0              33
  CLUS_4             0              22
  CLUS_5             0               8
  CLUS_6             2              19
  CLUS_7             0               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TTC38 MUTATED        1      1      0      2      0      0      0
  TTC38 WILD-TYPE     41     25     12     22      8     23     12
D59V6, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             1              41
  CLUS_2             1              25
  CLUS_3             0              12
  CLUS_4             2              22
  CLUS_5             0               8
  CLUS_6             0              23
  CLUS_7             0              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC38 MUTATED        2      0      2
  TTC38 WILD-TYPE     48     56     39
D59V7, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             0              56
  CLUS_3             2              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC38 MUTATED        2      0      2
  TTC38 WILD-TYPE     66     38     39
D59V8, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             2              66
  CLUS_2             0              38
  CLUS_3             2              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TTC38 MUTATED        2      0      2
  TTC38 WILD-TYPE     65     36     42
D59V9, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             2              65
  CLUS_2             0              36
  CLUS_3             2              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TTC38 MUTATED        0      2      0      0      0      2
  TTC38 WILD-TYPE     33     33     19     27     19     12
D59V10, multiclass
        clus
vv       TTC38 MUTATED TTC38 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              33
  CLUS_3             0              19
  CLUS_4             0              27
  CLUS_5             0              19
  CLUS_6             2              12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
