[1] "ofn"        "-oTTHCA-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/THCA-TP/22542946/THCA-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/THCA-TP/22511444/transformed.cor.cli.txt"

nPatients in clinical file=503, in cluster file=499, common to both=499
[1] "Reduce the number of clustering variables from 42 to 36."
[1]  36 499
[1] "AMP PEAK 1(1Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(1Q31.2) MUTATED AMP PEAK 1(1Q31.2) WILD-TYPE 
                          29                          470 
  AMP PEAK 1(1Q31.2) MUTATED AMP PEAK 1(1Q31.2) WILD-TYPE 
                          29                          470 
[1] "AMP PEAK 3(4Q31.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(4Q31.21) MUTATED AMP PEAK 3(4Q31.21) WILD-TYPE 
                            9                           490 
  AMP PEAK 3(4Q31.21) MUTATED AMP PEAK 3(4Q31.21) WILD-TYPE 
                            9                           490 
[1] "AMP PEAK 4(5Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 4(5Q21.1) MUTATED AMP PEAK 4(5Q21.1) WILD-TYPE 
                          23                          476 
  AMP PEAK 4(5Q21.1) MUTATED AMP PEAK 4(5Q21.1) WILD-TYPE 
                          23                          476 
[1] "AMP PEAK 5(5Q33.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 5(5Q33.1) MUTATED AMP PEAK 5(5Q33.1) WILD-TYPE 
                          21                          478 
  AMP PEAK 5(5Q33.1) MUTATED AMP PEAK 5(5Q33.1) WILD-TYPE 
                          21                          478 
[1] "AMP PEAK 6(13Q14.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 6(13Q14.2) MUTATED AMP PEAK 6(13Q14.2) WILD-TYPE 
                            6                           493 
  AMP PEAK 6(13Q14.2) MUTATED AMP PEAK 6(13Q14.2) WILD-TYPE 
                            6                           493 
[1] "AMP PEAK 7(22Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 7(22Q11.21) MUTATED AMP PEAK 7(22Q11.21) WILD-TYPE 
                             7                            492 
  AMP PEAK 7(22Q11.21) MUTATED AMP PEAK 7(22Q11.21) WILD-TYPE 
                             7                            492 
[1] "AMP PEAK 8(XP11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 8(XP11.22) MUTATED AMP PEAK 8(XP11.22) WILD-TYPE 
                            8                           491 
  AMP PEAK 8(XP11.22) MUTATED AMP PEAK 8(XP11.22) WILD-TYPE 
                            8                           491 
[1] "AMP PEAK 9(XQ22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 9(XQ22.3) MUTATED AMP PEAK 9(XQ22.3) WILD-TYPE 
                          15                          484 
  AMP PEAK 9(XQ22.3) MUTATED AMP PEAK 9(XQ22.3) WILD-TYPE 
                          15                          484 
[1] "DEL PEAK  1(1Q42.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1Q42.13) MUTATED DEL PEAK  1(1Q42.13) WILD-TYPE 
                             5                            494 
  DEL PEAK  1(1Q42.13) MUTATED DEL PEAK  1(1Q42.13) WILD-TYPE 
                             5                            494 
[1] "DEL PEAK  2(2P23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE 
                           12                           487 
  DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE 
                           12                           487 
[1] "DEL PEAK  3(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           10                           489 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           10                           489 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           13                           486 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           13                           486 
[1] "DEL PEAK  5(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE 
                            5                           494 
  DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE 
                            5                           494 
[1] "DEL PEAK  6(5P15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE 
                            4                           495 
  DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE 
                            4                           495 
[1] "DEL PEAK 10(7Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(7Q34) MUTATED DEL PEAK 10(7Q34) WILD-TYPE 
                          4                         495 
  DEL PEAK 10(7Q34) MUTATED DEL PEAK 10(7Q34) WILD-TYPE 
                          4                         495 
[1] "DEL PEAK 11(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE 
                            4                           495 
  DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE 
                            4                           495 
[1] "DEL PEAK 12(8P22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE 
                          4                         495 
  DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE 
                          4                         495 
[1] "DEL PEAK 13(8P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE 
                          4                         495 
  DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE 
                          4                         495 
[1] "DEL PEAK 14(8Q24.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8Q24.22) MUTATED DEL PEAK 14(8Q24.22) WILD-TYPE 
                             7                            492 
  DEL PEAK 14(8Q24.22) MUTATED DEL PEAK 14(8Q24.22) WILD-TYPE 
                             7                            492 
[1] "DEL PEAK 15(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                           20                           479 
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                           20                           479 
[1] "DEL PEAK 16(9Q22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9Q22.33) MUTATED DEL PEAK 16(9Q22.33) WILD-TYPE 
                            27                            472 
  DEL PEAK 16(9Q22.33) MUTATED DEL PEAK 16(9Q22.33) WILD-TYPE 
                            27                            472 
[1] "DEL PEAK 17(10P12.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(10P12.31) MUTATED DEL PEAK 17(10P12.31) WILD-TYPE 
                              7                             492 
  DEL PEAK 17(10P12.31) MUTATED DEL PEAK 17(10P12.31) WILD-TYPE 
                              7                             492 
[1] "DEL PEAK 18(10Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10Q21.2) MUTATED DEL PEAK 18(10Q21.2) WILD-TYPE 
                            12                            487 
  DEL PEAK 18(10Q21.2) MUTATED DEL PEAK 18(10Q21.2) WILD-TYPE 
                            12                            487 
[1] "DEL PEAK 19(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE 
                             12                             487 
  DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE 
                             12                             487 
[1] "DEL PEAK 20(13Q12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(13Q12.3) MUTATED DEL PEAK 20(13Q12.3) WILD-TYPE 
                            16                            483 
  DEL PEAK 20(13Q12.3) MUTATED DEL PEAK 20(13Q12.3) WILD-TYPE 
                            16                            483 
[1] "DEL PEAK 21(13Q14.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(13Q14.3) MUTATED DEL PEAK 21(13Q14.3) WILD-TYPE 
                            20                            479 
  DEL PEAK 21(13Q14.3) MUTATED DEL PEAK 21(13Q14.3) WILD-TYPE 
                            20                            479 
[1] "DEL PEAK 23(15Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(15Q25.3) MUTATED DEL PEAK 23(15Q25.3) WILD-TYPE 
                             8                            491 
  DEL PEAK 23(15Q25.3) MUTATED DEL PEAK 23(15Q25.3) WILD-TYPE 
                             8                            491 
[1] "DEL PEAK 24(16Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(16Q23.3) MUTATED DEL PEAK 24(16Q23.3) WILD-TYPE 
                             6                            493 
  DEL PEAK 24(16Q23.3) MUTATED DEL PEAK 24(16Q23.3) WILD-TYPE 
                             6                            493 
[1] "DEL PEAK 25(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE 
                             8                            491 
  DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE 
                             8                            491 
[1] "DEL PEAK 26(18Q21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(18Q21.33) MUTATED DEL PEAK 26(18Q21.33) WILD-TYPE 
                              5                             494 
  DEL PEAK 26(18Q21.33) MUTATED DEL PEAK 26(18Q21.33) WILD-TYPE 
                              5                             494 
[1] "DEL PEAK 27(19P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE 
                             7                            492 
  DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE 
                             7                            492 
[1] "DEL PEAK 28(19P13.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(19P13.12) MUTATED DEL PEAK 28(19P13.12) WILD-TYPE 
                              8                             491 
  DEL PEAK 28(19P13.12) MUTATED DEL PEAK 28(19P13.12) WILD-TYPE 
                              8                             491 
[1] "DEL PEAK 30(21Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(21Q21.1) MUTATED DEL PEAK 30(21Q21.1) WILD-TYPE 
                             9                            490 
  DEL PEAK 30(21Q21.1) MUTATED DEL PEAK 30(21Q21.1) WILD-TYPE 
                             9                            490 
[1] "DEL PEAK 31(22Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(22Q13.1) MUTATED DEL PEAK 31(22Q13.1) WILD-TYPE 
                            89                            410 
  DEL PEAK 31(22Q13.1) MUTATED DEL PEAK 31(22Q13.1) WILD-TYPE 
                            89                            410 
[1] "DEL PEAK 32(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE 
                             90                             409 
  DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE 
                             90                             409 
[1] "DEL PEAK 33(XQ28) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(XQ28) MUTATED DEL PEAK 33(XQ28) WILD-TYPE 
                          4                         495 
  DEL PEAK 33(XQ28) MUTATED DEL PEAK 33(XQ28) WILD-TYPE 
                          4                         495 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 499 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 499 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(1Q31.2) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q31.2) MUTATED       11      6     12
  AMP PEAK 1(1Q31.2) WILD-TYPE    121    132    217
D1V1, multiclass
        clus
vv       AMP PEAK 1(1Q31.2) MUTATED AMP PEAK 1(1Q31.2) WILD-TYPE
  CLUS_1                         11                          121
  CLUS_2                          6                          132
  CLUS_3                         12                          217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 1(1Q31.2) MUTATED       11      3      7      1      7
  AMP PEAK 1(1Q31.2) WILD-TYPE     35    144     77     41    173
D1V2, multiclass
        clus
vv       AMP PEAK 1(1Q31.2) MUTATED AMP PEAK 1(1Q31.2) WILD-TYPE
  CLUS_1                         11                           35
  CLUS_2                          3                          144
  CLUS_3                          7                           77
  CLUS_4                          1                           41
  CLUS_5                          7                          173
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q31.2) MUTATED        0      6      1      5
  AMP PEAK 1(1Q31.2) WILD-TYPE     64     58     41     44
D1V3, multiclass
        clus
vv       AMP PEAK 1(1Q31.2) MUTATED AMP PEAK 1(1Q31.2) WILD-TYPE
  CLUS_1                          0                           64
  CLUS_2                          6                           58
  CLUS_3                          1                           41
  CLUS_4                          5                           44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 1(1Q31.2) MUTATED        0      1      3      0      3      5      0
  AMP PEAK 1(1Q31.2) WILD-TYPE     46     27     30     29     44     22      9
D1V4, multiclass
        clus
vv       AMP PEAK 1(1Q31.2) MUTATED AMP PEAK 1(1Q31.2) WILD-TYPE
  CLUS_1                          0                           46
  CLUS_2                          1                           27
  CLUS_3                          3                           30
  CLUS_4                          0                           29
  CLUS_5                          3                           44
  CLUS_6                          5                           22
  CLUS_7                          0                            9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q31.2) MUTATED       19      3      5      2
  AMP PEAK 1(1Q31.2) WILD-TYPE    139    164     53    112
D1V5, multiclass
        clus
vv       AMP PEAK 1(1Q31.2) MUTATED AMP PEAK 1(1Q31.2) WILD-TYPE
  CLUS_1                         19                          139
  CLUS_2                          3                          164
  CLUS_3                          5                           53
  CLUS_4                          2                          112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 1(1Q31.2) MUTATED       18      3      1      2      5
  AMP PEAK 1(1Q31.2) WILD-TYPE     86    131     85     93     73
D1V6, multiclass
        clus
vv       AMP PEAK 1(1Q31.2) MUTATED AMP PEAK 1(1Q31.2) WILD-TYPE
  CLUS_1                         18                           86
  CLUS_2                          3                          131
  CLUS_3                          1                           85
  CLUS_4                          2                           93
  CLUS_5                          5                           73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q31.2) MUTATED       16      4      3      6
  AMP PEAK 1(1Q31.2) WILD-TYPE    149    141    116     63
D1V7, multiclass
        clus
vv       AMP PEAK 1(1Q31.2) MUTATED AMP PEAK 1(1Q31.2) WILD-TYPE
  CLUS_1                         16                          149
  CLUS_2                          4                          141
  CLUS_3                          3                          116
  CLUS_4                          6                           63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q31.2) MUTATED       16      4      9
  AMP PEAK 1(1Q31.2) WILD-TYPE    162    124    183
D1V8, multiclass
        clus
vv       AMP PEAK 1(1Q31.2) MUTATED AMP PEAK 1(1Q31.2) WILD-TYPE
  CLUS_1                         16                          162
  CLUS_2                          4                          124
  CLUS_3                          9                          183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q31.2) MUTATED       13      3      5      4
  AMP PEAK 1(1Q31.2) WILD-TYPE    118    122    103    100
D1V9, multiclass
        clus
vv       AMP PEAK 1(1Q31.2) MUTATED AMP PEAK 1(1Q31.2) WILD-TYPE
  CLUS_1                         13                          118
  CLUS_2                          3                          122
  CLUS_3                          5                          103
  CLUS_4                          4                          100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q31.2) MUTATED       15      3      7
  AMP PEAK 1(1Q31.2) WILD-TYPE    148    117    178
D1V10, multiclass
        clus
vv       AMP PEAK 1(1Q31.2) MUTATED AMP PEAK 1(1Q31.2) WILD-TYPE
  CLUS_1                         15                          148
  CLUS_2                          3                          117
  CLUS_3                          7                          178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK 3(4Q31.21) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(4Q31.21) MUTATED        0      1      8
  AMP PEAK 3(4Q31.21) WILD-TYPE    132    137    221
D2V1, multiclass
        clus
vv       AMP PEAK 3(4Q31.21) MUTATED AMP PEAK 3(4Q31.21) WILD-TYPE
  CLUS_1                           0                           132
  CLUS_2                           1                           137
  CLUS_3                           8                           221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 3(4Q31.21) MUTATED        0      6      2      1      0
  AMP PEAK 3(4Q31.21) WILD-TYPE     46    141     82     41    180
D2V2, multiclass
        clus
vv       AMP PEAK 3(4Q31.21) MUTATED AMP PEAK 3(4Q31.21) WILD-TYPE
  CLUS_1                           0                            46
  CLUS_2                           6                           141
  CLUS_3                           2                            82
  CLUS_4                           1                            41
  CLUS_5                           0                           180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(4Q31.21) MUTATED        1      0      1      1
  AMP PEAK 3(4Q31.21) WILD-TYPE     63     64     41     48
D2V3, multiclass
        clus
vv       AMP PEAK 3(4Q31.21) MUTATED AMP PEAK 3(4Q31.21) WILD-TYPE
  CLUS_1                           1                            63
  CLUS_2                           0                            64
  CLUS_3                           1                            41
  CLUS_4                           1                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(4Q31.21) MUTATED        1      1      0      1      0      0
  AMP PEAK 3(4Q31.21) WILD-TYPE     45     27     33     28     47     27
                               vv
clus                            CLUS_7
  AMP PEAK 3(4Q31.21) MUTATED        0
  AMP PEAK 3(4Q31.21) WILD-TYPE      9
D2V4, multiclass
        clus
vv       AMP PEAK 3(4Q31.21) MUTATED AMP PEAK 3(4Q31.21) WILD-TYPE
  CLUS_1                           1                            45
  CLUS_2                           1                            27
  CLUS_3                           0                            33
  CLUS_4                           1                            28
  CLUS_5                           0                            47
  CLUS_6                           0                            27
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(4Q31.21) MUTATED        2      6      0      1
  AMP PEAK 3(4Q31.21) WILD-TYPE    156    161     58    113
D2V5, multiclass
        clus
vv       AMP PEAK 3(4Q31.21) MUTATED AMP PEAK 3(4Q31.21) WILD-TYPE
  CLUS_1                           2                           156
  CLUS_2                           6                           161
  CLUS_3                           0                            58
  CLUS_4                           1                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 3(4Q31.21) MUTATED        2      6      1      0      0
  AMP PEAK 3(4Q31.21) WILD-TYPE    102    128     85     95     78
D2V6, multiclass
        clus
vv       AMP PEAK 3(4Q31.21) MUTATED AMP PEAK 3(4Q31.21) WILD-TYPE
  CLUS_1                           2                           102
  CLUS_2                           6                           128
  CLUS_3                           1                            85
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(4Q31.21) MUTATED        3      3      3      0
  AMP PEAK 3(4Q31.21) WILD-TYPE    162    142    116     69
D2V7, multiclass
        clus
vv       AMP PEAK 3(4Q31.21) MUTATED AMP PEAK 3(4Q31.21) WILD-TYPE
  CLUS_1                           3                           162
  CLUS_2                           3                           142
  CLUS_3                           3                           116
  CLUS_4                           0                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(4Q31.21) MUTATED        3      4      2
  AMP PEAK 3(4Q31.21) WILD-TYPE    175    124    190
D2V8, multiclass
        clus
vv       AMP PEAK 3(4Q31.21) MUTATED AMP PEAK 3(4Q31.21) WILD-TYPE
  CLUS_1                           3                           175
  CLUS_2                           4                           124
  CLUS_3                           2                           190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(4Q31.21) MUTATED        1      4      1      3
  AMP PEAK 3(4Q31.21) WILD-TYPE    130    121    107    101
D2V9, multiclass
        clus
vv       AMP PEAK 3(4Q31.21) MUTATED AMP PEAK 3(4Q31.21) WILD-TYPE
  CLUS_1                           1                           130
  CLUS_2                           4                           121
  CLUS_3                           1                           107
  CLUS_4                           3                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(4Q31.21) MUTATED        2      5      2
  AMP PEAK 3(4Q31.21) WILD-TYPE    161    115    183
D2V10, multiclass
        clus
vv       AMP PEAK 3(4Q31.21) MUTATED AMP PEAK 3(4Q31.21) WILD-TYPE
  CLUS_1                           2                           161
  CLUS_2                           5                           115
  CLUS_3                           2                           183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK 4(5Q21.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q21.1) MUTATED        5      1     17
  AMP PEAK 4(5Q21.1) WILD-TYPE    127    137    212
D3V1, multiclass
        clus
vv       AMP PEAK 4(5Q21.1) MUTATED AMP PEAK 4(5Q21.1) WILD-TYPE
  CLUS_1                          5                          127
  CLUS_2                          1                          137
  CLUS_3                         17                          212
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 4(5Q21.1) MUTATED        1     14      4      0      4
  AMP PEAK 4(5Q21.1) WILD-TYPE     45    133     80     42    176
D3V2, multiclass
        clus
vv       AMP PEAK 4(5Q21.1) MUTATED AMP PEAK 4(5Q21.1) WILD-TYPE
  CLUS_1                          1                           45
  CLUS_2                         14                          133
  CLUS_3                          4                           80
  CLUS_4                          0                           42
  CLUS_5                          4                          176
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q21.1) MUTATED        3      4      3      0
  AMP PEAK 4(5Q21.1) WILD-TYPE     61     60     39     49
D3V3, multiclass
        clus
vv       AMP PEAK 4(5Q21.1) MUTATED AMP PEAK 4(5Q21.1) WILD-TYPE
  CLUS_1                          3                           61
  CLUS_2                          4                           60
  CLUS_3                          3                           39
  CLUS_4                          0                           49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 4(5Q21.1) MUTATED        3      1      0      3      0      3      0
  AMP PEAK 4(5Q21.1) WILD-TYPE     43     27     33     26     47     24      9
D3V4, multiclass
        clus
vv       AMP PEAK 4(5Q21.1) MUTATED AMP PEAK 4(5Q21.1) WILD-TYPE
  CLUS_1                          3                           43
  CLUS_2                          1                           27
  CLUS_3                          0                           33
  CLUS_4                          3                           26
  CLUS_5                          0                           47
  CLUS_6                          3                           24
  CLUS_7                          0                            9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q21.1) MUTATED        3     15      2      3
  AMP PEAK 4(5Q21.1) WILD-TYPE    155    152     56    111
D3V5, multiclass
        clus
vv       AMP PEAK 4(5Q21.1) MUTATED AMP PEAK 4(5Q21.1) WILD-TYPE
  CLUS_1                          3                          155
  CLUS_2                         15                          152
  CLUS_3                          2                           56
  CLUS_4                          3                          111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 4(5Q21.1) MUTATED        2     14      3      3      1
  AMP PEAK 4(5Q21.1) WILD-TYPE    102    120     83     92     77
D3V6, multiclass
        clus
vv       AMP PEAK 4(5Q21.1) MUTATED AMP PEAK 4(5Q21.1) WILD-TYPE
  CLUS_1                          2                          102
  CLUS_2                         14                          120
  CLUS_3                          3                           83
  CLUS_4                          3                           92
  CLUS_5                          1                           77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q21.1) MUTATED        6     13      3      1
  AMP PEAK 4(5Q21.1) WILD-TYPE    159    132    116     68
D3V7, multiclass
        clus
vv       AMP PEAK 4(5Q21.1) MUTATED AMP PEAK 4(5Q21.1) WILD-TYPE
  CLUS_1                          6                          159
  CLUS_2                         13                          132
  CLUS_3                          3                          116
  CLUS_4                          1                           68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q21.1) MUTATED        5     13      5
  AMP PEAK 4(5Q21.1) WILD-TYPE    173    115    187
D3V8, multiclass
        clus
vv       AMP PEAK 4(5Q21.1) MUTATED AMP PEAK 4(5Q21.1) WILD-TYPE
  CLUS_1                          5                          173
  CLUS_2                         13                          115
  CLUS_3                          5                          187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q21.1) MUTATED        5     10      1      3
  AMP PEAK 4(5Q21.1) WILD-TYPE    126    115    107    101
D3V9, multiclass
        clus
vv       AMP PEAK 4(5Q21.1) MUTATED AMP PEAK 4(5Q21.1) WILD-TYPE
  CLUS_1                          5                          126
  CLUS_2                         10                          115
  CLUS_3                          1                          107
  CLUS_4                          3                          101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q21.1) MUTATED        5     10      4
  AMP PEAK 4(5Q21.1) WILD-TYPE    158    110    181
D3V10, multiclass
        clus
vv       AMP PEAK 4(5Q21.1) MUTATED AMP PEAK 4(5Q21.1) WILD-TYPE
  CLUS_1                          5                          158
  CLUS_2                         10                          110
  CLUS_3                          4                          181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK 5(5Q33.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(5Q33.1) MUTATED        3      0     18
  AMP PEAK 5(5Q33.1) WILD-TYPE    129    138    211
D4V1, multiclass
        clus
vv       AMP PEAK 5(5Q33.1) MUTATED AMP PEAK 5(5Q33.1) WILD-TYPE
  CLUS_1                          3                          129
  CLUS_2                          0                          138
  CLUS_3                         18                          211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 5(5Q33.1) MUTATED        1     16      1      0      3
  AMP PEAK 5(5Q33.1) WILD-TYPE     45    131     83     42    177
D4V2, multiclass
        clus
vv       AMP PEAK 5(5Q33.1) MUTATED AMP PEAK 5(5Q33.1) WILD-TYPE
  CLUS_1                          1                           45
  CLUS_2                         16                          131
  CLUS_3                          1                           83
  CLUS_4                          0                           42
  CLUS_5                          3                          177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(5Q33.1) MUTATED        4      4      3      0
  AMP PEAK 5(5Q33.1) WILD-TYPE     60     60     39     49
D4V3, multiclass
        clus
vv       AMP PEAK 5(5Q33.1) MUTATED AMP PEAK 5(5Q33.1) WILD-TYPE
  CLUS_1                          4                           60
  CLUS_2                          4                           60
  CLUS_3                          3                           39
  CLUS_4                          0                           49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 5(5Q33.1) MUTATED        4      1      0      3      0      3      0
  AMP PEAK 5(5Q33.1) WILD-TYPE     42     27     33     26     47     24      9
D4V4, multiclass
        clus
vv       AMP PEAK 5(5Q33.1) MUTATED AMP PEAK 5(5Q33.1) WILD-TYPE
  CLUS_1                          4                           42
  CLUS_2                          1                           27
  CLUS_3                          0                           33
  CLUS_4                          3                           26
  CLUS_5                          0                           47
  CLUS_6                          3                           24
  CLUS_7                          0                            9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(5Q33.1) MUTATED        2     16      1      2
  AMP PEAK 5(5Q33.1) WILD-TYPE    156    151     57    112
D4V5, multiclass
        clus
vv       AMP PEAK 5(5Q33.1) MUTATED AMP PEAK 5(5Q33.1) WILD-TYPE
  CLUS_1                          2                          156
  CLUS_2                         16                          151
  CLUS_3                          1                           57
  CLUS_4                          2                          112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 5(5Q33.1) MUTATED        2     16      1      2      0
  AMP PEAK 5(5Q33.1) WILD-TYPE    102    118     85     93     78
D4V6, multiclass
        clus
vv       AMP PEAK 5(5Q33.1) MUTATED AMP PEAK 5(5Q33.1) WILD-TYPE
  CLUS_1                          2                          102
  CLUS_2                         16                          118
  CLUS_3                          1                           85
  CLUS_4                          2                           93
  CLUS_5                          0                           78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(5Q33.1) MUTATED        5     14      1      1
  AMP PEAK 5(5Q33.1) WILD-TYPE    160    131    118     68
D4V7, multiclass
        clus
vv       AMP PEAK 5(5Q33.1) MUTATED AMP PEAK 5(5Q33.1) WILD-TYPE
  CLUS_1                          5                          160
  CLUS_2                         14                          131
  CLUS_3                          1                          118
  CLUS_4                          1                           68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(5Q33.1) MUTATED        4     15      2
  AMP PEAK 5(5Q33.1) WILD-TYPE    174    113    190
D4V8, multiclass
        clus
vv       AMP PEAK 5(5Q33.1) MUTATED AMP PEAK 5(5Q33.1) WILD-TYPE
  CLUS_1                          4                          174
  CLUS_2                         15                          113
  CLUS_3                          2                          190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(5Q33.1) MUTATED        4     12      1      1
  AMP PEAK 5(5Q33.1) WILD-TYPE    127    113    107    103
D4V9, multiclass
        clus
vv       AMP PEAK 5(5Q33.1) MUTATED AMP PEAK 5(5Q33.1) WILD-TYPE
  CLUS_1                          4                          127
  CLUS_2                         12                          113
  CLUS_3                          1                          107
  CLUS_4                          1                          103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(5Q33.1) MUTATED        4     12      2
  AMP PEAK 5(5Q33.1) WILD-TYPE    159    108    183
D4V10, multiclass
        clus
vv       AMP PEAK 5(5Q33.1) MUTATED AMP PEAK 5(5Q33.1) WILD-TYPE
  CLUS_1                          4                          159
  CLUS_2                         12                          108
  CLUS_3                          2                          183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK 6(13Q14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(13Q14.2) MUTATED        0      1      5
  AMP PEAK 6(13Q14.2) WILD-TYPE    132    137    224
D5V1, multiclass
        clus
vv       AMP PEAK 6(13Q14.2) MUTATED AMP PEAK 6(13Q14.2) WILD-TYPE
  CLUS_1                           0                           132
  CLUS_2                           1                           137
  CLUS_3                           5                           224
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 6(13Q14.2) MUTATED        0      4      1      0      1
  AMP PEAK 6(13Q14.2) WILD-TYPE     46    143     83     42    179
D5V2, multiclass
        clus
vv       AMP PEAK 6(13Q14.2) MUTATED AMP PEAK 6(13Q14.2) WILD-TYPE
  CLUS_1                           0                            46
  CLUS_2                           4                           143
  CLUS_3                           1                            83
  CLUS_4                           0                            42
  CLUS_5                           1                           179
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(13Q14.2) MUTATED        1      2      0      0
  AMP PEAK 6(13Q14.2) WILD-TYPE     63     62     42     49
D5V3, multiclass
        clus
vv       AMP PEAK 6(13Q14.2) MUTATED AMP PEAK 6(13Q14.2) WILD-TYPE
  CLUS_1                           1                            63
  CLUS_2                           2                            62
  CLUS_3                           0                            42
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 6(13Q14.2) MUTATED        1      0      0      0      0      2
  AMP PEAK 6(13Q14.2) WILD-TYPE     45     28     33     29     47     25
                               vv
clus                            CLUS_7
  AMP PEAK 6(13Q14.2) MUTATED        0
  AMP PEAK 6(13Q14.2) WILD-TYPE      9
D5V4, multiclass
        clus
vv       AMP PEAK 6(13Q14.2) MUTATED AMP PEAK 6(13Q14.2) WILD-TYPE
  CLUS_1                           1                            45
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           0                            29
  CLUS_5                           0                            47
  CLUS_6                           2                            25
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(13Q14.2) MUTATED        0      4      1      1
  AMP PEAK 6(13Q14.2) WILD-TYPE    158    163     57    113
D5V5, multiclass
        clus
vv       AMP PEAK 6(13Q14.2) MUTATED AMP PEAK 6(13Q14.2) WILD-TYPE
  CLUS_1                           0                           158
  CLUS_2                           4                           163
  CLUS_3                           1                            57
  CLUS_4                           1                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 6(13Q14.2) MUTATED        0      4      1      1      0
  AMP PEAK 6(13Q14.2) WILD-TYPE    104    130     85     94     78
D5V6, multiclass
        clus
vv       AMP PEAK 6(13Q14.2) MUTATED AMP PEAK 6(13Q14.2) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                           4                           130
  CLUS_3                           1                            85
  CLUS_4                           1                            94
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(13Q14.2) MUTATED        2      2      1      1
  AMP PEAK 6(13Q14.2) WILD-TYPE    163    143    118     68
D5V7, multiclass
        clus
vv       AMP PEAK 6(13Q14.2) MUTATED AMP PEAK 6(13Q14.2) WILD-TYPE
  CLUS_1                           2                           163
  CLUS_2                           2                           143
  CLUS_3                           1                           118
  CLUS_4                           1                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(13Q14.2) MUTATED        2      3      1
  AMP PEAK 6(13Q14.2) WILD-TYPE    176    125    191
D5V8, multiclass
        clus
vv       AMP PEAK 6(13Q14.2) MUTATED AMP PEAK 6(13Q14.2) WILD-TYPE
  CLUS_1                           2                           176
  CLUS_2                           3                           125
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(13Q14.2) MUTATED        1      3      0      1
  AMP PEAK 6(13Q14.2) WILD-TYPE    130    122    108    103
D5V9, multiclass
        clus
vv       AMP PEAK 6(13Q14.2) MUTATED AMP PEAK 6(13Q14.2) WILD-TYPE
  CLUS_1                           1                           130
  CLUS_2                           3                           122
  CLUS_3                           0                           108
  CLUS_4                           1                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(13Q14.2) MUTATED        2      2      1
  AMP PEAK 6(13Q14.2) WILD-TYPE    161    118    184
D5V10, multiclass
        clus
vv       AMP PEAK 6(13Q14.2) MUTATED AMP PEAK 6(13Q14.2) WILD-TYPE
  CLUS_1                           2                           161
  CLUS_2                           2                           118
  CLUS_3                           1                           184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK 7(22Q11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(22Q11.21) MUTATED        5      1      1
  AMP PEAK 7(22Q11.21) WILD-TYPE    127    137    228
D6V1, multiclass
        clus
vv       AMP PEAK 7(22Q11.21) MUTATED AMP PEAK 7(22Q11.21) WILD-TYPE
  CLUS_1                            5                            127
  CLUS_2                            1                            137
  CLUS_3                            1                            228
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 7(22Q11.21) MUTATED        0      5      2      0      0
  AMP PEAK 7(22Q11.21) WILD-TYPE     46    142     82     42    180
D6V2, multiclass
        clus
vv       AMP PEAK 7(22Q11.21) MUTATED AMP PEAK 7(22Q11.21) WILD-TYPE
  CLUS_1                            0                             46
  CLUS_2                            5                            142
  CLUS_3                            2                             82
  CLUS_4                            0                             42
  CLUS_5                            0                            180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(22Q11.21) MUTATED        0      0      0      1
  AMP PEAK 7(22Q11.21) WILD-TYPE     64     64     42     48
D6V3, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 7(22Q11.21) MUTATED"
clus
  AMP PEAK 7(22Q11.21) MUTATED AMP PEAK 7(22Q11.21) WILD-TYPE 
                             1                            218 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2Q4                     TCGA-DJ-A2Q5 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2Q6                     TCGA-DJ-A2Q7 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2Q8                     TCGA-DJ-A2Q9 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2QA                     TCGA-DJ-A2QB 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2QC                     TCGA-DO-A1JZ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-E3-A3DY 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-E3-A3DZ                     TCGA-E3-A3E0 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-E3-A3E1                     TCGA-E3-A3E3 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A2EA 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3CL                     TCGA-EL-A3CM 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3CN                     TCGA-EL-A3CO 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3CP                     TCGA-EL-A3CR 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3CS                     TCGA-EL-A3CT 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3CU                     TCGA-EL-A3CV 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3CW                     TCGA-EL-A3CX 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3CZ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3D0                     TCGA-EL-A3D1 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3D4                     TCGA-EL-A3D5 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3GP                     TCGA-EL-A3GQ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3GR                     TCGA-EL-A3GS 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3GU                     TCGA-EL-A3GV 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3GW                     TCGA-EL-A3GX 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3GY                     TCGA-EL-A3GZ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3H1                     TCGA-EL-A3H2 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3H3                     TCGA-EL-A3H4 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3H5                     TCGA-EL-A3H7 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3H8                     TCGA-EL-A3MW 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3MX                     TCGA-EL-A3MY 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3MZ                     TCGA-EL-A3N2 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3N3                     TCGA-EM-A1CT 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A1CU                     TCGA-EM-A1CV 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A1CW                     TCGA-EM-A1YA 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A1YB                     TCGA-EM-A1YC 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A1YD                     TCGA-EM-A1YE 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A22I                     TCGA-EM-A22J 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A22L                     TCGA-EM-A22M 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A22O                     TCGA-EM-A22Q 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A2CJ                     TCGA-EM-A2CK 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A2CL                     TCGA-EM-A2CN 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A2CO                     TCGA-EM-A2CP 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A2CQ                     TCGA-EM-A2CU 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A2OV                     TCGA-EM-A2OY 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A2P1                     TCGA-EM-A3AI 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A3AJ                     TCGA-EM-A3AL 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A3AN                     TCGA-EM-A3AO 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A3AP                     TCGA-EM-A3FJ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A3FL                     TCGA-EM-A3FN 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A3FO                     TCGA-EM-A3FP 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A25G                     TCGA-ET-A25L 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A25M                     TCGA-ET-A25O 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A2MY                     TCGA-ET-A2MZ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A2N0                     TCGA-ET-A2N1 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A2N4                     TCGA-ET-A2N5 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A39I                     TCGA-ET-A39J 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A39L                     TCGA-ET-A39M 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A39N                     TCGA-ET-A39P 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A39R                     TCGA-ET-A39T 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A3BN                     TCGA-ET-A3BP 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A3BS                     TCGA-ET-A3BT 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A3BU                     TCGA-ET-A3BV 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A3BW                     TCGA-ET-A3BX 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A3DO                     TCGA-ET-A3DP 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A3DS                     TCGA-ET-A3DV 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A3DW                     TCGA-FE-A22Z 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-FE-A230                     TCGA-FE-A231 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-FE-A232                     TCGA-FE-A233 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-FE-A234                     TCGA-FE-A235 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-FE-A236                     TCGA-FE-A237 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-FE-A239                     TCGA-FE-A23A 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-FY-A2QD                     TCGA-FY-A3BL 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-FY-A3ON                     TCGA-GE-A2C6 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-H2-A2K9                     TCGA-IM-A3EB 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-IM-A3ED                     TCGA-J8-A3NZ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-J8-A3O0                     TCGA-J8-A3O1 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 7(22Q11.21) MUTATED        0      0      0      1      0      0
  AMP PEAK 7(22Q11.21) WILD-TYPE     46     28     33     28     47     27
                                vv
clus                             CLUS_7
  AMP PEAK 7(22Q11.21) MUTATED        0
  AMP PEAK 7(22Q11.21) WILD-TYPE      9
D6V4, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 7(22Q11.21) MUTATED"
clus
  AMP PEAK 7(22Q11.21) MUTATED AMP PEAK 7(22Q11.21) WILD-TYPE 
                             1                            218 
                    TCGA-BJ-A0YZ                     TCGA-BJ-A0Z0 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A0Z2                     TCGA-BJ-A0Z3 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A0Z5                     TCGA-BJ-A0Z9 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A0ZA                     TCGA-BJ-A0ZB 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A0ZC                     TCGA-BJ-A0ZE 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A0ZG                     TCGA-BJ-A0ZJ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A18Y                     TCGA-BJ-A18Z 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A190                     TCGA-BJ-A191 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A192                     TCGA-BJ-A28R 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A28S                     TCGA-BJ-A28T 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A28V                     TCGA-BJ-A28W 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A28Z                     TCGA-BJ-A290 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A291                     TCGA-BJ-A2N7 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A2N9                     TCGA-BJ-A2NA 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A2P4                     TCGA-BJ-A3EZ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-BJ-A3F0                     TCGA-CE-A13K 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-CE-A27D                     TCGA-CE-A3MD 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-CE-A3ME                     TCGA-DE-A0Y2 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DE-A2OL                     TCGA-DE-A3KN 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A13M                     TCGA-DJ-A13O 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A13R                     TCGA-DJ-A13S 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A13V                     TCGA-DJ-A13W 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A13X                     TCGA-DJ-A1QD 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A1QE                     TCGA-DJ-A1QF 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A1QG                     TCGA-DJ-A1QI 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A1QL                     TCGA-DJ-A1QM 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A1QN                     TCGA-DJ-A1QO 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2PN                     TCGA-DJ-A2PO 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2PP                     TCGA-DJ-A2PQ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2PR                     TCGA-DJ-A2PS 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2PU                     TCGA-DJ-A2PV 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2PW                     TCGA-DJ-A2PY 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2PZ                     TCGA-DJ-A2Q0 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2Q1                     TCGA-DJ-A2Q2 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2Q4                     TCGA-DJ-A2Q5 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2Q6                     TCGA-DJ-A2Q7 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2Q8                     TCGA-DJ-A2Q9 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2QA                     TCGA-DJ-A2QB 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DJ-A2QC                     TCGA-DO-A1JZ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-DO-A1K0                     TCGA-E3-A3DY 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-E3-A3DZ                     TCGA-E3-A3E0 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-E3-A3E1                     TCGA-E3-A3E3 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-E3-A3E5                     TCGA-E8-A2EA 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3CL                     TCGA-EL-A3CM 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3CN                     TCGA-EL-A3CO 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3CP                     TCGA-EL-A3CR 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3CS                     TCGA-EL-A3CT 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3CU                     TCGA-EL-A3CV 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3CW                     TCGA-EL-A3CX 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3CY                     TCGA-EL-A3CZ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3D0                     TCGA-EL-A3D1 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3D4                     TCGA-EL-A3D5 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3D6                     TCGA-EL-A3GO 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3GP                     TCGA-EL-A3GQ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3GR                     TCGA-EL-A3GS 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3GU                     TCGA-EL-A3GV 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3GW                     TCGA-EL-A3GX 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3GY                     TCGA-EL-A3GZ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3H1                     TCGA-EL-A3H2 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3H3                     TCGA-EL-A3H4 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3H5                     TCGA-EL-A3H7 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3H8                     TCGA-EL-A3MW 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3MX                     TCGA-EL-A3MY 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3MZ                     TCGA-EL-A3N2 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EL-A3N3                     TCGA-EM-A1CT 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A1CU                     TCGA-EM-A1CV 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A1CW                     TCGA-EM-A1YA 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A1YB                     TCGA-EM-A1YC 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A1YD                     TCGA-EM-A1YE 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A22I                     TCGA-EM-A22J 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A22L                     TCGA-EM-A22M 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A22O                     TCGA-EM-A22Q 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A2CJ                     TCGA-EM-A2CK 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A2CL                     TCGA-EM-A2CN 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A2CO                     TCGA-EM-A2CP 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A2CQ                     TCGA-EM-A2CU 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A2OV                     TCGA-EM-A2OY 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A2P1                     TCGA-EM-A3AI 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A3AJ                     TCGA-EM-A3AL 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A3AN                     TCGA-EM-A3AO 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A3AP                     TCGA-EM-A3FJ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A3FL                     TCGA-EM-A3FN 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-EM-A3FO                     TCGA-EM-A3FP 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A25G                     TCGA-ET-A25L 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A25M                     TCGA-ET-A25O 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A2MY                     TCGA-ET-A2MZ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A2N0                     TCGA-ET-A2N1 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A2N4                     TCGA-ET-A2N5 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A39I                     TCGA-ET-A39J 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A39L                     TCGA-ET-A39M 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A39N                     TCGA-ET-A39P 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A39R                     TCGA-ET-A39T 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A3BN                     TCGA-ET-A3BP 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A3BS                     TCGA-ET-A3BT 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A3BU                     TCGA-ET-A3BV 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A3BW                     TCGA-ET-A3BX 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A3DO                     TCGA-ET-A3DP 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A3DS                     TCGA-ET-A3DV 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-ET-A3DW                     TCGA-FE-A22Z 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-FE-A230                     TCGA-FE-A231 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-FE-A232                     TCGA-FE-A233 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-FE-A234                     TCGA-FE-A235 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-FE-A236                     TCGA-FE-A237 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-FE-A239                     TCGA-FE-A23A 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-FY-A2QD                     TCGA-FY-A3BL 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-FY-A3ON                     TCGA-GE-A2C6 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-H2-A2K9                     TCGA-IM-A3EB 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-IM-A3ED                     TCGA-J8-A3NZ 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                    TCGA-J8-A3O0                     TCGA-J8-A3O1 
"AMP PEAK 7(22Q11.21) WILD-TYPE" "AMP PEAK 7(22Q11.21) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(22Q11.21) MUTATED        0      5      2      0
  AMP PEAK 7(22Q11.21) WILD-TYPE    158    162     56    114
D6V5, multiclass
        clus
vv       AMP PEAK 7(22Q11.21) MUTATED AMP PEAK 7(22Q11.21) WILD-TYPE
  CLUS_1                            0                            158
  CLUS_2                            5                            162
  CLUS_3                            2                             56
  CLUS_4                            0                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 7(22Q11.21) MUTATED        0      5      2      0      0
  AMP PEAK 7(22Q11.21) WILD-TYPE    104    129     84     95     78
D6V6, multiclass
        clus
vv       AMP PEAK 7(22Q11.21) MUTATED AMP PEAK 7(22Q11.21) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                            5                            129
  CLUS_3                            2                             84
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(22Q11.21) MUTATED        1      5      0      1
  AMP PEAK 7(22Q11.21) WILD-TYPE    164    140    119     68
D6V7, multiclass
        clus
vv       AMP PEAK 7(22Q11.21) MUTATED AMP PEAK 7(22Q11.21) WILD-TYPE
  CLUS_1                            1                            164
  CLUS_2                            5                            140
  CLUS_3                            0                            119
  CLUS_4                            1                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(22Q11.21) MUTATED        1      5      1
  AMP PEAK 7(22Q11.21) WILD-TYPE    177    123    191
D6V8, multiclass
        clus
vv       AMP PEAK 7(22Q11.21) MUTATED AMP PEAK 7(22Q11.21) WILD-TYPE
  CLUS_1                            1                            177
  CLUS_2                            5                            123
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(22Q11.21) MUTATED        1      5      1      0
  AMP PEAK 7(22Q11.21) WILD-TYPE    130    120    107    104
D6V9, multiclass
        clus
vv       AMP PEAK 7(22Q11.21) MUTATED AMP PEAK 7(22Q11.21) WILD-TYPE
  CLUS_1                            1                            130
  CLUS_2                            5                            120
  CLUS_3                            1                            107
  CLUS_4                            0                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(22Q11.21) MUTATED        2      5      0
  AMP PEAK 7(22Q11.21) WILD-TYPE    161    115    185
D6V10, multiclass
        clus
vv       AMP PEAK 7(22Q11.21) MUTATED AMP PEAK 7(22Q11.21) WILD-TYPE
  CLUS_1                            2                            161
  CLUS_2                            5                            115
  CLUS_3                            0                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK 8(XP11.22) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 8(XP11.22) MUTATED        1      0      7
  AMP PEAK 8(XP11.22) WILD-TYPE    131    138    222
D7V1, multiclass
        clus
vv       AMP PEAK 8(XP11.22) MUTATED AMP PEAK 8(XP11.22) WILD-TYPE
  CLUS_1                           1                           131
  CLUS_2                           0                           138
  CLUS_3                           7                           222
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 8(XP11.22) MUTATED        0      6      2      0      0
  AMP PEAK 8(XP11.22) WILD-TYPE     46    141     82     42    180
D7V2, multiclass
        clus
vv       AMP PEAK 8(XP11.22) MUTATED AMP PEAK 8(XP11.22) WILD-TYPE
  CLUS_1                           0                            46
  CLUS_2                           6                           141
  CLUS_3                           2                            82
  CLUS_4                           0                            42
  CLUS_5                           0                           180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 8(XP11.22) MUTATED        1      2      1      1
  AMP PEAK 8(XP11.22) WILD-TYPE     63     62     41     48
D7V3, multiclass
        clus
vv       AMP PEAK 8(XP11.22) MUTATED AMP PEAK 8(XP11.22) WILD-TYPE
  CLUS_1                           1                            63
  CLUS_2                           2                            62
  CLUS_3                           1                            41
  CLUS_4                           1                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 8(XP11.22) MUTATED        2      0      0      2      0      1
  AMP PEAK 8(XP11.22) WILD-TYPE     44     28     33     27     47     26
                               vv
clus                            CLUS_7
  AMP PEAK 8(XP11.22) MUTATED        0
  AMP PEAK 8(XP11.22) WILD-TYPE      9
D7V4, multiclass
        clus
vv       AMP PEAK 8(XP11.22) MUTATED AMP PEAK 8(XP11.22) WILD-TYPE
  CLUS_1                           2                            44
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           2                            27
  CLUS_5                           0                            47
  CLUS_6                           1                            26
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 8(XP11.22) MUTATED        1      6      0      1
  AMP PEAK 8(XP11.22) WILD-TYPE    157    161     58    113
D7V5, multiclass
        clus
vv       AMP PEAK 8(XP11.22) MUTATED AMP PEAK 8(XP11.22) WILD-TYPE
  CLUS_1                           1                           157
  CLUS_2                           6                           161
  CLUS_3                           0                            58
  CLUS_4                           1                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 8(XP11.22) MUTATED        1      6      1      0      0
  AMP PEAK 8(XP11.22) WILD-TYPE    103    128     85     95     78
D7V6, multiclass
        clus
vv       AMP PEAK 8(XP11.22) MUTATED AMP PEAK 8(XP11.22) WILD-TYPE
  CLUS_1                           1                           103
  CLUS_2                           6                           128
  CLUS_3                           1                            85
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 8(XP11.22) MUTATED        2      5      1      0
  AMP PEAK 8(XP11.22) WILD-TYPE    163    140    118     69
D7V7, multiclass
        clus
vv       AMP PEAK 8(XP11.22) MUTATED AMP PEAK 8(XP11.22) WILD-TYPE
  CLUS_1                           2                           163
  CLUS_2                           5                           140
  CLUS_3                           1                           118
  CLUS_4                           0                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 8(XP11.22) MUTATED        2      5      1
  AMP PEAK 8(XP11.22) WILD-TYPE    176    123    191
D7V8, multiclass
        clus
vv       AMP PEAK 8(XP11.22) MUTATED AMP PEAK 8(XP11.22) WILD-TYPE
  CLUS_1                           2                           176
  CLUS_2                           5                           123
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 8(XP11.22) MUTATED        1      5      1      0
  AMP PEAK 8(XP11.22) WILD-TYPE    130    120    107    104
D7V9, multiclass
        clus
vv       AMP PEAK 8(XP11.22) MUTATED AMP PEAK 8(XP11.22) WILD-TYPE
  CLUS_1                           1                           130
  CLUS_2                           5                           120
  CLUS_3                           1                           107
  CLUS_4                           0                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 8(XP11.22) MUTATED        2      4      1
  AMP PEAK 8(XP11.22) WILD-TYPE    161    116    184
D7V10, multiclass
        clus
vv       AMP PEAK 8(XP11.22) MUTATED AMP PEAK 8(XP11.22) WILD-TYPE
  CLUS_1                           2                           161
  CLUS_2                           4                           116
  CLUS_3                           1                           184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK 9(XQ22.3) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 9(XQ22.3) MUTATED        3      2     10
  AMP PEAK 9(XQ22.3) WILD-TYPE    129    136    219
D8V1, multiclass
        clus
vv       AMP PEAK 9(XQ22.3) MUTATED AMP PEAK 9(XQ22.3) WILD-TYPE
  CLUS_1                          3                          129
  CLUS_2                          2                          136
  CLUS_3                         10                          219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 9(XQ22.3) MUTATED        0      6      2      2      5
  AMP PEAK 9(XQ22.3) WILD-TYPE     46    141     82     40    175
D8V2, multiclass
        clus
vv       AMP PEAK 9(XQ22.3) MUTATED AMP PEAK 9(XQ22.3) WILD-TYPE
  CLUS_1                          0                           46
  CLUS_2                          6                          141
  CLUS_3                          2                           82
  CLUS_4                          2                           40
  CLUS_5                          5                          175
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 9(XQ22.3) MUTATED        1      2      1      0
  AMP PEAK 9(XQ22.3) WILD-TYPE     63     62     41     49
D8V3, multiclass
        clus
vv       AMP PEAK 9(XQ22.3) MUTATED AMP PEAK 9(XQ22.3) WILD-TYPE
  CLUS_1                          1                           63
  CLUS_2                          2                           62
  CLUS_3                          1                           41
  CLUS_4                          0                           49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 9(XQ22.3) MUTATED        2      0      0      1      0      1      0
  AMP PEAK 9(XQ22.3) WILD-TYPE     44     28     33     28     47     26      9
D8V4, multiclass
        clus
vv       AMP PEAK 9(XQ22.3) MUTATED AMP PEAK 9(XQ22.3) WILD-TYPE
  CLUS_1                          2                           44
  CLUS_2                          0                           28
  CLUS_3                          0                           33
  CLUS_4                          1                           28
  CLUS_5                          0                           47
  CLUS_6                          1                           26
  CLUS_7                          0                            9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 9(XQ22.3) MUTATED        5      7      1      2
  AMP PEAK 9(XQ22.3) WILD-TYPE    153    160     57    112
D8V5, multiclass
        clus
vv       AMP PEAK 9(XQ22.3) MUTATED AMP PEAK 9(XQ22.3) WILD-TYPE
  CLUS_1                          5                          153
  CLUS_2                          7                          160
  CLUS_3                          1                           57
  CLUS_4                          2                          112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 9(XQ22.3) MUTATED        3      6      2      2      2
  AMP PEAK 9(XQ22.3) WILD-TYPE    101    128     84     93     76
D8V6, multiclass
        clus
vv       AMP PEAK 9(XQ22.3) MUTATED AMP PEAK 9(XQ22.3) WILD-TYPE
  CLUS_1                          3                          101
  CLUS_2                          6                          128
  CLUS_3                          2                           84
  CLUS_4                          2                           93
  CLUS_5                          2                           76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 9(XQ22.3) MUTATED        5      5      4      1
  AMP PEAK 9(XQ22.3) WILD-TYPE    160    140    115     68
D8V7, multiclass
        clus
vv       AMP PEAK 9(XQ22.3) MUTATED AMP PEAK 9(XQ22.3) WILD-TYPE
  CLUS_1                          5                          160
  CLUS_2                          5                          140
  CLUS_3                          4                          115
  CLUS_4                          1                           68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 9(XQ22.3) MUTATED        6      5      4
  AMP PEAK 9(XQ22.3) WILD-TYPE    172    123    188
D8V8, multiclass
        clus
vv       AMP PEAK 9(XQ22.3) MUTATED AMP PEAK 9(XQ22.3) WILD-TYPE
  CLUS_1                          6                          172
  CLUS_2                          5                          123
  CLUS_3                          4                          188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 9(XQ22.3) MUTATED        3      5      1      5
  AMP PEAK 9(XQ22.3) WILD-TYPE    128    120    107     99
D8V9, multiclass
        clus
vv       AMP PEAK 9(XQ22.3) MUTATED AMP PEAK 9(XQ22.3) WILD-TYPE
  CLUS_1                          3                          128
  CLUS_2                          5                          120
  CLUS_3                          1                          107
  CLUS_4                          5                           99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 9(XQ22.3) MUTATED        5      4      5
  AMP PEAK 9(XQ22.3) WILD-TYPE    158    116    180
D8V10, multiclass
        clus
vv       AMP PEAK 9(XQ22.3) MUTATED AMP PEAK 9(XQ22.3) WILD-TYPE
  CLUS_1                          5                          158
  CLUS_2                          4                          116
  CLUS_3                          5                          180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DEL PEAK  1(1Q42.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q42.13) MUTATED        0      1      4
  DEL PEAK  1(1Q42.13) WILD-TYPE    132    137    225
D9V1, multiclass
        clus
vv       DEL PEAK  1(1Q42.13) MUTATED DEL PEAK  1(1Q42.13) WILD-TYPE
  CLUS_1                            0                            132
  CLUS_2                            1                            137
  CLUS_3                            4                            225
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1Q42.13) MUTATED        0      3      1      0      1
  DEL PEAK  1(1Q42.13) WILD-TYPE     46    144     83     42    179
D9V2, multiclass
        clus
vv       DEL PEAK  1(1Q42.13) MUTATED DEL PEAK  1(1Q42.13) WILD-TYPE
  CLUS_1                            0                             46
  CLUS_2                            3                            144
  CLUS_3                            1                             83
  CLUS_4                            0                             42
  CLUS_5                            1                            179
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1Q42.13) MUTATED        2      0      2      0
  DEL PEAK  1(1Q42.13) WILD-TYPE     62     64     40     49
D9V3, multiclass
        clus
vv       DEL PEAK  1(1Q42.13) MUTATED DEL PEAK  1(1Q42.13) WILD-TYPE
  CLUS_1                            2                             62
  CLUS_2                            0                             64
  CLUS_3                            2                             40
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1Q42.13) MUTATED        1      1      0      1      1      0
  DEL PEAK  1(1Q42.13) WILD-TYPE     45     27     33     28     46     27
                                vv
clus                             CLUS_7
  DEL PEAK  1(1Q42.13) MUTATED        0
  DEL PEAK  1(1Q42.13) WILD-TYPE      9
D9V4, multiclass
        clus
vv       DEL PEAK  1(1Q42.13) MUTATED DEL PEAK  1(1Q42.13) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            1                             27
  CLUS_3                            0                             33
  CLUS_4                            1                             28
  CLUS_5                            1                             46
  CLUS_6                            0                             27
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1Q42.13) MUTATED        0      4      1      0
  DEL PEAK  1(1Q42.13) WILD-TYPE    158    163     57    114
D9V5, multiclass
        clus
vv       DEL PEAK  1(1Q42.13) MUTATED DEL PEAK  1(1Q42.13) WILD-TYPE
  CLUS_1                            0                            158
  CLUS_2                            4                            163
  CLUS_3                            1                             57
  CLUS_4                            0                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1Q42.13) MUTATED        1      4      0      0      0
  DEL PEAK  1(1Q42.13) WILD-TYPE    103    130     86     95     78
D9V6, multiclass
        clus
vv       DEL PEAK  1(1Q42.13) MUTATED DEL PEAK  1(1Q42.13) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                            4                            130
  CLUS_3                            0                             86
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1Q42.13) MUTATED        2      3      0      0
  DEL PEAK  1(1Q42.13) WILD-TYPE    163    142    119     69
D9V7, multiclass
        clus
vv       DEL PEAK  1(1Q42.13) MUTATED DEL PEAK  1(1Q42.13) WILD-TYPE
  CLUS_1                            2                            163
  CLUS_2                            3                            142
  CLUS_3                            0                            119
  CLUS_4                            0                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q42.13) MUTATED        1      3      1
  DEL PEAK  1(1Q42.13) WILD-TYPE    177    125    191
D9V8, multiclass
        clus
vv       DEL PEAK  1(1Q42.13) MUTATED DEL PEAK  1(1Q42.13) WILD-TYPE
  CLUS_1                            1                            177
  CLUS_2                            3                            125
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1Q42.13) MUTATED        2      2      0      0
  DEL PEAK  1(1Q42.13) WILD-TYPE    129    123    108    104
D9V9, multiclass
        clus
vv       DEL PEAK  1(1Q42.13) MUTATED DEL PEAK  1(1Q42.13) WILD-TYPE
  CLUS_1                            2                            129
  CLUS_2                            2                            123
  CLUS_3                            0                            108
  CLUS_4                            0                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q42.13) MUTATED        1      3      0
  DEL PEAK  1(1Q42.13) WILD-TYPE    162    117    185
D9V10, multiclass
        clus
vv       DEL PEAK  1(1Q42.13) MUTATED DEL PEAK  1(1Q42.13) WILD-TYPE
  CLUS_1                            1                            162
  CLUS_2                            3                            117
  CLUS_3                            0                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK  2(2P23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P23.1) MUTATED        1      0     11
  DEL PEAK  2(2P23.1) WILD-TYPE    131    138    218
D10V1, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                           1                           131
  CLUS_2                           0                           138
  CLUS_3                          11                           218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(2P23.1) MUTATED        0     10      2      0      0
  DEL PEAK  2(2P23.1) WILD-TYPE     46    137     82     42    180
D10V2, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                           0                            46
  CLUS_2                          10                           137
  CLUS_3                           2                            82
  CLUS_4                           0                            42
  CLUS_5                           0                           180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2P23.1) MUTATED        2      3      0      1
  DEL PEAK  2(2P23.1) WILD-TYPE     62     61     42     48
D10V3, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                           2                            62
  CLUS_2                           3                            61
  CLUS_3                           0                            42
  CLUS_4                           1                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(2P23.1) MUTATED        2      0      0      1      0      3
  DEL PEAK  2(2P23.1) WILD-TYPE     44     28     33     28     47     24
                               vv
clus                            CLUS_7
  DEL PEAK  2(2P23.1) MUTATED        0
  DEL PEAK  2(2P23.1) WILD-TYPE      9
D10V4, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                           2                            44
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           1                            28
  CLUS_5                           0                            47
  CLUS_6                           3                            24
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2P23.1) MUTATED        0     12      0      0
  DEL PEAK  2(2P23.1) WILD-TYPE    158    155     58    114
D10V5, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                           0                           158
  CLUS_2                          12                           155
  CLUS_3                           0                            58
  CLUS_4                           0                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(2P23.1) MUTATED        0     11      1      0      0
  DEL PEAK  2(2P23.1) WILD-TYPE    104    123     85     95     78
D10V6, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                          11                           123
  CLUS_3                           1                            85
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2P23.1) MUTATED        1      8      0      3
  DEL PEAK  2(2P23.1) WILD-TYPE    164    137    119     66
D10V7, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                           1                           164
  CLUS_2                           8                           137
  CLUS_3                           0                           119
  CLUS_4                           3                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P23.1) MUTATED        0     11      1
  DEL PEAK  2(2P23.1) WILD-TYPE    178    117    191
D10V8, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                           0                           178
  CLUS_2                          11                           117
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2P23.1) MUTATED        1      7      0      1
  DEL PEAK  2(2P23.1) WILD-TYPE    130    118    108    103
D10V9, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                           1                           130
  CLUS_2                           7                           118
  CLUS_3                           0                           108
  CLUS_4                           1                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P23.1) MUTATED        0      9      0
  DEL PEAK  2(2P23.1) WILD-TYPE    163    111    185
D10V10, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                           0                           163
  CLUS_2                           9                           111
  CLUS_3                           0                           185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK  3(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        0      0     10
  DEL PEAK  3(2Q22.1) WILD-TYPE    132    138    219
D11V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           0                           132
  CLUS_2                           0                           138
  CLUS_3                          10                           219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        0      9      1      0      0
  DEL PEAK  3(2Q22.1) WILD-TYPE     46    138     83     42    180
D11V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           0                            46
  CLUS_2                           9                           138
  CLUS_3                           1                            83
  CLUS_4                           0                            42
  CLUS_5                           0                           180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        2      3      1      0
  DEL PEAK  3(2Q22.1) WILD-TYPE     62     61     41     49
D11V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            62
  CLUS_2                           3                            61
  CLUS_3                           1                            41
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q22.1) MUTATED        2      0      0      1      0      3
  DEL PEAK  3(2Q22.1) WILD-TYPE     44     28     33     28     47     24
                               vv
clus                            CLUS_7
  DEL PEAK  3(2Q22.1) MUTATED        0
  DEL PEAK  3(2Q22.1) WILD-TYPE      9
D11V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            44
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           1                            28
  CLUS_5                           0                            47
  CLUS_6                           3                            24
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        0     10      0      0
  DEL PEAK  3(2Q22.1) WILD-TYPE    158    157     58    114
D11V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           0                           158
  CLUS_2                          10                           157
  CLUS_3                           0                            58
  CLUS_4                           0                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        0     10      0      0      0
  DEL PEAK  3(2Q22.1) WILD-TYPE    104    124     86     95     78
D11V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                          10                           124
  CLUS_3                           0                            86
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        1      6      0      3
  DEL PEAK  3(2Q22.1) WILD-TYPE    164    139    119     66
D11V7, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           1                           164
  CLUS_2                           6                           139
  CLUS_3                           0                           119
  CLUS_4                           3                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        0     10      0
  DEL PEAK  3(2Q22.1) WILD-TYPE    178    118    192
D11V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           0                           178
  CLUS_2                          10                           118
  CLUS_3                           0                           192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        1      7      0      0
  DEL PEAK  3(2Q22.1) WILD-TYPE    130    118    108    104
D11V9, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           1                           130
  CLUS_2                           7                           118
  CLUS_3                           0                           108
  CLUS_4                           0                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        0      8      0
  DEL PEAK  3(2Q22.1) WILD-TYPE    163    112    185
D11V10, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           0                           163
  CLUS_2                           8                           112
  CLUS_3                           0                           185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        0      0     13
  DEL PEAK  4(2Q37.3) WILD-TYPE    132    138    216
D12V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                           132
  CLUS_2                           0                           138
  CLUS_3                          13                           216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED        0     11      2      0      0
  DEL PEAK  4(2Q37.3) WILD-TYPE     46    136     82     42    180
D12V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                            46
  CLUS_2                          11                           136
  CLUS_3                           2                            82
  CLUS_4                           0                            42
  CLUS_5                           0                           180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        2      4      2      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     62     60     40     48
D12V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                            62
  CLUS_2                           4                            60
  CLUS_3                           2                            40
  CLUS_4                           1                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        3      0      0      1      1      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     43     28     33     28     46     23
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        0
  DEL PEAK  4(2Q37.3) WILD-TYPE      9
D12V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           3                            43
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           1                            28
  CLUS_5                           1                            46
  CLUS_6                           4                            23
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        0     12      0      1
  DEL PEAK  4(2Q37.3) WILD-TYPE    158    155     58    113
D12V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                           158
  CLUS_2                          12                           155
  CLUS_3                           0                            58
  CLUS_4                           1                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED        0     12      1      0      0
  DEL PEAK  4(2Q37.3) WILD-TYPE    104    122     85     95     78
D12V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                          12                           122
  CLUS_3                           1                            85
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        2      7      0      4
  DEL PEAK  4(2Q37.3) WILD-TYPE    163    138    119     65
D12V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                           163
  CLUS_2                           7                           138
  CLUS_3                           0                           119
  CLUS_4                           4                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        0     12      1
  DEL PEAK  4(2Q37.3) WILD-TYPE    178    116    191
D12V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                           178
  CLUS_2                          12                           116
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        1      9      0      1
  DEL PEAK  4(2Q37.3) WILD-TYPE    130    116    108    103
D12V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           1                           130
  CLUS_2                           9                           116
  CLUS_3                           0                           108
  CLUS_4                           1                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        0     10      1
  DEL PEAK  4(2Q37.3) WILD-TYPE    163    110    184
D12V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                           163
  CLUS_2                          10                           110
  CLUS_3                           1                           184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK  5(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q34.3) MUTATED        0      0      5
  DEL PEAK  5(4Q34.3) WILD-TYPE    132    138    224
D13V1, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           0                           132
  CLUS_2                           0                           138
  CLUS_3                           5                           224
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q34.3) MUTATED        0      3      1      0      1
  DEL PEAK  5(4Q34.3) WILD-TYPE     46    144     83     42    179
D13V2, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           0                            46
  CLUS_2                           3                           144
  CLUS_3                           1                            83
  CLUS_4                           0                            42
  CLUS_5                           1                           179
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q34.3) MUTATED        2      1      1      0
  DEL PEAK  5(4Q34.3) WILD-TYPE     62     63     41     49
D13V3, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           2                            62
  CLUS_2                           1                            63
  CLUS_3                           1                            41
  CLUS_4                           0                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4Q34.3) MUTATED        2      0      0      1      0      1
  DEL PEAK  5(4Q34.3) WILD-TYPE     44     28     33     28     47     26
                               vv
clus                            CLUS_7
  DEL PEAK  5(4Q34.3) MUTATED        0
  DEL PEAK  5(4Q34.3) WILD-TYPE      9
D13V4, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           2                            44
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           1                            28
  CLUS_5                           0                            47
  CLUS_6                           1                            26
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q34.3) MUTATED        1      3      1      0
  DEL PEAK  5(4Q34.3) WILD-TYPE    157    164     57    114
D13V5, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           1                           157
  CLUS_2                           3                           164
  CLUS_3                           1                            57
  CLUS_4                           0                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q34.3) MUTATED        1      3      1      0      0
  DEL PEAK  5(4Q34.3) WILD-TYPE    103    131     85     95     78
D13V6, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           1                           103
  CLUS_2                           3                           131
  CLUS_3                           1                            85
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q34.3) MUTATED        2      3      0      0
  DEL PEAK  5(4Q34.3) WILD-TYPE    163    142    119     69
D13V7, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           2                           163
  CLUS_2                           3                           142
  CLUS_3                           0                           119
  CLUS_4                           0                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q34.3) MUTATED        2      3      0
  DEL PEAK  5(4Q34.3) WILD-TYPE    176    125    192
D13V8, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           2                           176
  CLUS_2                           3                           125
  CLUS_3                           0                           192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q34.3) MUTATED        2      3      0      0
  DEL PEAK  5(4Q34.3) WILD-TYPE    129    122    108    104
D13V9, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           2                           129
  CLUS_2                           3                           122
  CLUS_3                           0                           108
  CLUS_4                           0                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q34.3) MUTATED        2      3      0
  DEL PEAK  5(4Q34.3) WILD-TYPE    161    117    185
D13V10, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           2                           161
  CLUS_2                           3                           117
  CLUS_3                           0                           185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK  6(5P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(5P15.2) MUTATED        1      1      2
  DEL PEAK  6(5P15.2) WILD-TYPE    131    137    227
D14V1, multiclass
        clus
vv       DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE
  CLUS_1                           1                           131
  CLUS_2                           1                           137
  CLUS_3                           2                           227
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(5P15.2) MUTATED        1      0      1      1      1
  DEL PEAK  6(5P15.2) WILD-TYPE     45    147     83     41    179
D14V2, multiclass
        clus
vv       DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE
  CLUS_1                           1                            45
  CLUS_2                           0                           147
  CLUS_3                           1                            83
  CLUS_4                           1                            41
  CLUS_5                           1                           179
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(5P15.2) MUTATED        0      0      0      0
  DEL PEAK  6(5P15.2) WILD-TYPE     64     64     42     49
D14V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(5P15.2) MUTATED        0      0      0      0      0      0
  DEL PEAK  6(5P15.2) WILD-TYPE     46     28     33     29     47     27
                               vv
clus                            CLUS_7
  DEL PEAK  6(5P15.2) MUTATED        0
  DEL PEAK  6(5P15.2) WILD-TYPE      9
D14V4, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(5P15.2) MUTATED        2      0      0      2
  DEL PEAK  6(5P15.2) WILD-TYPE    156    167     58    112
D14V5, multiclass
        clus
vv       DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE
  CLUS_1                           2                           156
  CLUS_2                           0                           167
  CLUS_3                           0                            58
  CLUS_4                           2                           112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(5P15.2) MUTATED        2      0      1      0      1
  DEL PEAK  6(5P15.2) WILD-TYPE    102    134     85     95     77
D14V6, multiclass
        clus
vv       DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE
  CLUS_1                           2                           102
  CLUS_2                           0                           134
  CLUS_3                           1                            85
  CLUS_4                           0                            95
  CLUS_5                           1                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(5P15.2) MUTATED        2      0      2      0
  DEL PEAK  6(5P15.2) WILD-TYPE    163    145    117     69
D14V7, multiclass
        clus
vv       DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE
  CLUS_1                           2                           163
  CLUS_2                           0                           145
  CLUS_3                           2                           117
  CLUS_4                           0                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(5P15.2) MUTATED        2      0      2
  DEL PEAK  6(5P15.2) WILD-TYPE    176    128    190
D14V8, multiclass
        clus
vv       DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE
  CLUS_1                           2                           176
  CLUS_2                           0                           128
  CLUS_3                           2                           190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(5P15.2) MUTATED        2      0      0      2
  DEL PEAK  6(5P15.2) WILD-TYPE    129    125    108    102
D14V9, multiclass
        clus
vv       DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE
  CLUS_1                           2                           129
  CLUS_2                           0                           125
  CLUS_3                           0                           108
  CLUS_4                           2                           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(5P15.2) MUTATED        2      0      2
  DEL PEAK  6(5P15.2) WILD-TYPE    161    120    183
D14V10, multiclass
        clus
vv       DEL PEAK  6(5P15.2) MUTATED DEL PEAK  6(5P15.2) WILD-TYPE
  CLUS_1                           2                           161
  CLUS_2                           0                           120
  CLUS_3                           2                           183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK 10(7Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(7Q34) MUTATED        1      2      1
  DEL PEAK 10(7Q34) WILD-TYPE    131    136    228
D15V1, multiclass
        clus
vv       DEL PEAK 10(7Q34) MUTATED DEL PEAK 10(7Q34) WILD-TYPE
  CLUS_1                         1                         131
  CLUS_2                         2                         136
  CLUS_3                         1                         228
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(7Q34) MUTATED        1      2      0      0      1
  DEL PEAK 10(7Q34) WILD-TYPE     45    145     84     42    179
D15V2, multiclass
        clus
vv       DEL PEAK 10(7Q34) MUTATED DEL PEAK 10(7Q34) WILD-TYPE
  CLUS_1                         1                          45
  CLUS_2                         2                         145
  CLUS_3                         0                          84
  CLUS_4                         0                          42
  CLUS_5                         1                         179
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(7Q34) MUTATED        0      1      0      0
  DEL PEAK 10(7Q34) WILD-TYPE     64     63     42     49
D15V3, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 10(7Q34) MUTATED"
clus
  DEL PEAK 10(7Q34) MUTATED DEL PEAK 10(7Q34) WILD-TYPE 
                          1                         218 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A190                  TCGA-BJ-A191 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A192                  TCGA-BJ-A28R 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28S                  TCGA-BJ-A28T 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28V                  TCGA-BJ-A28W 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28Z                  TCGA-BJ-A290 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A291                  TCGA-BJ-A2N7 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2N9                  TCGA-BJ-A2NA 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2P4                  TCGA-BJ-A3EZ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A3F0                  TCGA-CE-A13K 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-CE-A27D                  TCGA-CE-A3MD 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-CE-A3ME                  TCGA-DE-A0Y2 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DE-A2OL                  TCGA-DE-A3KN 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13M                  TCGA-DJ-A13O 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13R                  TCGA-DJ-A13S 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13V                  TCGA-DJ-A13W 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13X                  TCGA-DJ-A1QD 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QE                  TCGA-DJ-A1QF 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QG                  TCGA-DJ-A1QI 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QL                  TCGA-DJ-A1QM 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QN                  TCGA-DJ-A1QO 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PN                  TCGA-DJ-A2PO 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PP                  TCGA-DJ-A2PQ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PR                  TCGA-DJ-A2PS 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PU                  TCGA-DJ-A2PV 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PW                  TCGA-DJ-A2PY 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PZ                  TCGA-DJ-A2Q0 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q9                  TCGA-DJ-A2QA 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2QB                  TCGA-DJ-A2QC 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DO-A1JZ                  TCGA-DO-A1K0 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-E3-A3DY                  TCGA-E3-A3DZ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E0                  TCGA-E3-A3E1 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E3                  TCGA-E3-A3E5 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-E8-A2EA                  TCGA-EL-A3CL 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CM                  TCGA-EL-A3CN 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CO                  TCGA-EL-A3CP 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CR                  TCGA-EL-A3CS 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CT                  TCGA-EL-A3CU 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CV                  TCGA-EL-A3CW 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CX                  TCGA-EL-A3CY 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CZ                  TCGA-EL-A3D0 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D1                  TCGA-EL-A3D4 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D5                  TCGA-EL-A3D6 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GO                  TCGA-EL-A3GP 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GQ                  TCGA-EL-A3GR 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GS                  TCGA-EL-A3GU 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GV                  TCGA-EL-A3GW 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GX                  TCGA-EL-A3GY 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GZ                  TCGA-EL-A3H1 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H2                  TCGA-EL-A3H3 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H4                  TCGA-EL-A3H5 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H7                  TCGA-EL-A3H8 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MW                  TCGA-EL-A3MX 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MY                  TCGA-EL-A3MZ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3N2                  TCGA-EL-A3N3 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CT                  TCGA-EM-A1CU 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CV                  TCGA-EM-A1CW 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YA                  TCGA-EM-A1YB 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YC                  TCGA-EM-A1YD 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YE                  TCGA-EM-A22I 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A22J                  TCGA-EM-A22L 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A22M                  TCGA-EM-A22O 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A22Q                  TCGA-EM-A2CJ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CK                  TCGA-EM-A2CL 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CN                  TCGA-EM-A2CO 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CP                  TCGA-EM-A2CQ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CU                  TCGA-EM-A2OV 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A2OY                  TCGA-EM-A2P1 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AI                  TCGA-EM-A3AJ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AL                  TCGA-EM-A3AN 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AO                  TCGA-EM-A3AP 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FJ                  TCGA-EM-A3FL 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FN                  TCGA-EM-A3FO 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FP                  TCGA-ET-A25G 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A25L                  TCGA-ET-A25M 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A25O                  TCGA-ET-A2MY 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A2MZ                  TCGA-ET-A2N0 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N1                  TCGA-ET-A2N4 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N5                  TCGA-ET-A39I 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A39J                  TCGA-ET-A39L 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A39M                  TCGA-ET-A39N 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A39P                  TCGA-ET-A39R 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A39T                  TCGA-ET-A3BN 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BP                  TCGA-ET-A3BS 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BT                  TCGA-ET-A3BU 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BV                  TCGA-ET-A3BW 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BX                  TCGA-ET-A3DO 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DP                  TCGA-ET-A3DS 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DT                  TCGA-ET-A3DV 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DW                  TCGA-FE-A22Z 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FE-A230                  TCGA-FE-A231 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FE-A232                  TCGA-FE-A233 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FE-A234                  TCGA-FE-A235 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FE-A236                  TCGA-FE-A237 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FE-A239                  TCGA-FE-A23A 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FY-A2QD                  TCGA-FY-A3BL 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FY-A3ON                  TCGA-GE-A2C6 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-H2-A2K9                  TCGA-IM-A3EB 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-IM-A3ED                  TCGA-J8-A3NZ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-J8-A3O0                  TCGA-J8-A3O1 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 10(7Q34) MUTATED        0      0      1      0      0      0      0
  DEL PEAK 10(7Q34) WILD-TYPE     46     28     32     29     47     27      9
D15V4, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 10(7Q34) MUTATED"
clus
  DEL PEAK 10(7Q34) MUTATED DEL PEAK 10(7Q34) WILD-TYPE 
                          1                         218 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A190                  TCGA-BJ-A191 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A192                  TCGA-BJ-A28R 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28S                  TCGA-BJ-A28T 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28V                  TCGA-BJ-A28W 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28Z                  TCGA-BJ-A290 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A291                  TCGA-BJ-A2N7 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2N9                  TCGA-BJ-A2NA 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2P4                  TCGA-BJ-A3EZ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-BJ-A3F0                  TCGA-CE-A13K 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-CE-A27D                  TCGA-CE-A3MD 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-CE-A3ME                  TCGA-DE-A0Y2 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DE-A2OL                  TCGA-DE-A3KN 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13M                  TCGA-DJ-A13O 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13R                  TCGA-DJ-A13S 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13V                  TCGA-DJ-A13W 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13X                  TCGA-DJ-A1QD 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QE                  TCGA-DJ-A1QF 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QG                  TCGA-DJ-A1QI 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QL                  TCGA-DJ-A1QM 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QN                  TCGA-DJ-A1QO 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PN                  TCGA-DJ-A2PO 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PP                  TCGA-DJ-A2PQ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PR                  TCGA-DJ-A2PS 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PU                  TCGA-DJ-A2PV 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PW                  TCGA-DJ-A2PY 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PZ                  TCGA-DJ-A2Q0 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q9                  TCGA-DJ-A2QA 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2QB                  TCGA-DJ-A2QC 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-DO-A1JZ                  TCGA-DO-A1K0 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-E3-A3DY                  TCGA-E3-A3DZ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E0                  TCGA-E3-A3E1 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E3                  TCGA-E3-A3E5 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-E8-A2EA                  TCGA-EL-A3CL 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CM                  TCGA-EL-A3CN 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CO                  TCGA-EL-A3CP 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CR                  TCGA-EL-A3CS 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CT                  TCGA-EL-A3CU 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CV                  TCGA-EL-A3CW 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CX                  TCGA-EL-A3CY 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CZ                  TCGA-EL-A3D0 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D1                  TCGA-EL-A3D4 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D5                  TCGA-EL-A3D6 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GO                  TCGA-EL-A3GP 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GQ                  TCGA-EL-A3GR 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GS                  TCGA-EL-A3GU 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GV                  TCGA-EL-A3GW 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GX                  TCGA-EL-A3GY 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GZ                  TCGA-EL-A3H1 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H2                  TCGA-EL-A3H3 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H4                  TCGA-EL-A3H5 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H7                  TCGA-EL-A3H8 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MW                  TCGA-EL-A3MX 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MY                  TCGA-EL-A3MZ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EL-A3N2                  TCGA-EL-A3N3 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CT                  TCGA-EM-A1CU 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CV                  TCGA-EM-A1CW 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YA                  TCGA-EM-A1YB 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YC                  TCGA-EM-A1YD 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YE                  TCGA-EM-A22I 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A22J                  TCGA-EM-A22L 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A22M                  TCGA-EM-A22O 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A22Q                  TCGA-EM-A2CJ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CK                  TCGA-EM-A2CL 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CN                  TCGA-EM-A2CO 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CP                  TCGA-EM-A2CQ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CU                  TCGA-EM-A2OV 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A2OY                  TCGA-EM-A2P1 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AI                  TCGA-EM-A3AJ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AL                  TCGA-EM-A3AN 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AO                  TCGA-EM-A3AP 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FJ                  TCGA-EM-A3FL 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FN                  TCGA-EM-A3FO 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FP                  TCGA-ET-A25G 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A25L                  TCGA-ET-A25M 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A25O                  TCGA-ET-A2MY 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A2MZ                  TCGA-ET-A2N0 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N1                  TCGA-ET-A2N4 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N5                  TCGA-ET-A39I 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A39J                  TCGA-ET-A39L 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A39M                  TCGA-ET-A39N 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A39P                  TCGA-ET-A39R 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A39T                  TCGA-ET-A3BN 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BP                  TCGA-ET-A3BS 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BT                  TCGA-ET-A3BU 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BV                  TCGA-ET-A3BW 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BX                  TCGA-ET-A3DO 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DP                  TCGA-ET-A3DS 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DT                  TCGA-ET-A3DV 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DW                  TCGA-FE-A22Z 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FE-A230                  TCGA-FE-A231 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FE-A232                  TCGA-FE-A233 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FE-A234                  TCGA-FE-A235 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FE-A236                  TCGA-FE-A237 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FE-A239                  TCGA-FE-A23A 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FY-A2QD                  TCGA-FY-A3BL 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-FY-A3ON                  TCGA-GE-A2C6 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-H2-A2K9                  TCGA-IM-A3EB 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-IM-A3ED                  TCGA-J8-A3NZ 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                 TCGA-J8-A3O0                  TCGA-J8-A3O1 
"DEL PEAK 10(7Q34) WILD-TYPE" "DEL PEAK 10(7Q34) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(7Q34) MUTATED        1      2      0      0
  DEL PEAK 10(7Q34) WILD-TYPE    157    165     58    114
D15V5, multiclass
        clus
vv       DEL PEAK 10(7Q34) MUTATED DEL PEAK 10(7Q34) WILD-TYPE
  CLUS_1                         1                         157
  CLUS_2                         2                         165
  CLUS_3                         0                          58
  CLUS_4                         0                         114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(7Q34) MUTATED        0      1      1      0      1
  DEL PEAK 10(7Q34) WILD-TYPE    104    133     85     95     77
D15V6, multiclass
        clus
vv       DEL PEAK 10(7Q34) MUTATED DEL PEAK 10(7Q34) WILD-TYPE
  CLUS_1                         0                         104
  CLUS_2                         1                         133
  CLUS_3                         1                          85
  CLUS_4                         0                          95
  CLUS_5                         1                          77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(7Q34) MUTATED        1      2      1      0
  DEL PEAK 10(7Q34) WILD-TYPE    164    143    118     69
D15V7, multiclass
        clus
vv       DEL PEAK 10(7Q34) MUTATED DEL PEAK 10(7Q34) WILD-TYPE
  CLUS_1                         1                         164
  CLUS_2                         2                         143
  CLUS_3                         1                         118
  CLUS_4                         0                          69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(7Q34) MUTATED        1      1      2
  DEL PEAK 10(7Q34) WILD-TYPE    177    127    190
D15V8, multiclass
        clus
vv       DEL PEAK 10(7Q34) MUTATED DEL PEAK 10(7Q34) WILD-TYPE
  CLUS_1                         1                         177
  CLUS_2                         1                         127
  CLUS_3                         2                         190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(7Q34) MUTATED        1      1      2      0
  DEL PEAK 10(7Q34) WILD-TYPE    130    124    106    104
D15V9, multiclass
        clus
vv       DEL PEAK 10(7Q34) MUTATED DEL PEAK 10(7Q34) WILD-TYPE
  CLUS_1                         1                         130
  CLUS_2                         1                         124
  CLUS_3                         2                         106
  CLUS_4                         0                         104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(7Q34) MUTATED        1      1      2
  DEL PEAK 10(7Q34) WILD-TYPE    162    119    183
D15V10, multiclass
        clus
vv       DEL PEAK 10(7Q34) MUTATED DEL PEAK 10(7Q34) WILD-TYPE
  CLUS_1                         1                         162
  CLUS_2                         1                         119
  CLUS_3                         2                         183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK 11(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P23.2) MUTATED        0      0      4
  DEL PEAK 11(8P23.2) WILD-TYPE    132    138    225
D16V1, multiclass
        clus
vv       DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                           0                           132
  CLUS_2                           0                           138
  CLUS_3                           4                           225
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(8P23.2) MUTATED        0      3      1      0      0
  DEL PEAK 11(8P23.2) WILD-TYPE     46    144     83     42    180
D16V2, multiclass
        clus
vv       DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                           0                            46
  CLUS_2                           3                           144
  CLUS_3                           1                            83
  CLUS_4                           0                            42
  CLUS_5                           0                           180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8P23.2) MUTATED        1      1      0      0
  DEL PEAK 11(8P23.2) WILD-TYPE     63     63     42     49
D16V3, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 11(8P23.2) MUTATED"
clus
  DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A191                    TCGA-BJ-A192 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28R                    TCGA-BJ-A28S 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28T                    TCGA-BJ-A28V 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28W                    TCGA-BJ-A28Z 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A290                    TCGA-BJ-A291 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A2N7                    TCGA-BJ-A2N9 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A2NA                    TCGA-BJ-A2P4 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A3EZ                    TCGA-BJ-A3F0 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-CE-A13K                    TCGA-CE-A27D 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-CE-A3MD                    TCGA-CE-A3ME 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DE-A0Y2                    TCGA-DE-A2OL 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DE-A3KN                    TCGA-DJ-A13M 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13O                    TCGA-DJ-A13R 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13S                    TCGA-DJ-A13V 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13W                    TCGA-DJ-A13X 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QD                    TCGA-DJ-A1QE 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QF                    TCGA-DJ-A1QG 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QI                    TCGA-DJ-A1QL 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QM                    TCGA-DJ-A1QN 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QO                    TCGA-DJ-A2PN 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PO                    TCGA-DJ-A2PP 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PQ                    TCGA-DJ-A2PR 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PS                    TCGA-DJ-A2PU 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PV                    TCGA-DJ-A2PW 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PY                    TCGA-DJ-A2PZ 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CL                    TCGA-EL-A3CM 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CN                    TCGA-EL-A3CO 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CP                    TCGA-EL-A3CR 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CS                    TCGA-EL-A3CT 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CU                    TCGA-EL-A3CV 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CW                    TCGA-EL-A3CX 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CY                    TCGA-EL-A3CZ 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D0                    TCGA-EL-A3D1 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D4                    TCGA-EL-A3D5 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D6                    TCGA-EL-A3GO 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GP                    TCGA-EL-A3GQ 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GR                    TCGA-EL-A3GS 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GU                    TCGA-EL-A3GV 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GW                    TCGA-EL-A3GX 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GY                    TCGA-EL-A3GZ 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H1                    TCGA-EL-A3H2 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H3                    TCGA-EL-A3H4 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H5                    TCGA-EL-A3H7 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H8                    TCGA-EL-A3MW 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3MX                    TCGA-EL-A3MY 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3MZ                    TCGA-EL-A3N2 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3N3                    TCGA-EM-A1CT 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1CU                    TCGA-EM-A1CV 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1CW                    TCGA-EM-A1YA 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YB                    TCGA-EM-A1YC 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YD                    TCGA-EM-A1YE 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22I                    TCGA-EM-A22J 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22L                    TCGA-EM-A22M 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22O                    TCGA-EM-A22Q 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CJ                    TCGA-EM-A2CK 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CL                    TCGA-EM-A2CN 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CO                    TCGA-EM-A2CP 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CQ                    TCGA-EM-A2CU 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2OV                    TCGA-EM-A2OY 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2P1                    TCGA-EM-A3AI 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AJ                    TCGA-EM-A3AL 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AN                    TCGA-EM-A3AO 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AP                    TCGA-EM-A3FJ 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3FL                    TCGA-EM-A3FN 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3FO                    TCGA-EM-A3FP 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A25G                    TCGA-ET-A25L 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A25M                    TCGA-ET-A25O 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2MY                    TCGA-ET-A2MZ 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2N0                    TCGA-ET-A2N1 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2N4                    TCGA-ET-A2N5 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39I                    TCGA-ET-A39J 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39L                    TCGA-ET-A39M 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39N                    TCGA-ET-A39P 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BT 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"DEL PEAK 11(8P23.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(8P23.2) MUTATED        1      0      0      0      0      1
  DEL PEAK 11(8P23.2) WILD-TYPE     45     28     33     29     47     26
                               vv
clus                            CLUS_7
  DEL PEAK 11(8P23.2) MUTATED        0
  DEL PEAK 11(8P23.2) WILD-TYPE      9
D16V4, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 11(8P23.2) MUTATED"
clus
  DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE 
                            2                           217 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A191                    TCGA-BJ-A192 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28R                    TCGA-BJ-A28S 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28T                    TCGA-BJ-A28V 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28W                    TCGA-BJ-A28Z 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A290                    TCGA-BJ-A291 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A2N7                    TCGA-BJ-A2N9 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A2NA                    TCGA-BJ-A2P4 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A3EZ                    TCGA-BJ-A3F0 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-CE-A13K                    TCGA-CE-A27D 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-CE-A3MD                    TCGA-CE-A3ME 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DE-A0Y2                    TCGA-DE-A2OL 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DE-A3KN                    TCGA-DJ-A13M 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13O                    TCGA-DJ-A13R 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13S                    TCGA-DJ-A13V 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13W                    TCGA-DJ-A13X 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QD                    TCGA-DJ-A1QE 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QF                    TCGA-DJ-A1QG 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QI                    TCGA-DJ-A1QL 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QM                    TCGA-DJ-A1QN 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QO                    TCGA-DJ-A2PN 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PO                    TCGA-DJ-A2PP 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PQ                    TCGA-DJ-A2PR 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PS                    TCGA-DJ-A2PU 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PV                    TCGA-DJ-A2PW 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PY                    TCGA-DJ-A2PZ 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CL                    TCGA-EL-A3CM 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CN                    TCGA-EL-A3CO 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CP                    TCGA-EL-A3CR 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CS                    TCGA-EL-A3CT 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CU                    TCGA-EL-A3CV 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CW                    TCGA-EL-A3CX 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CY                    TCGA-EL-A3CZ 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D0                    TCGA-EL-A3D1 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D4                    TCGA-EL-A3D5 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D6                    TCGA-EL-A3GO 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GP                    TCGA-EL-A3GQ 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GR                    TCGA-EL-A3GS 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GU                    TCGA-EL-A3GV 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GW                    TCGA-EL-A3GX 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GY                    TCGA-EL-A3GZ 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H1                    TCGA-EL-A3H2 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H3                    TCGA-EL-A3H4 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H5                    TCGA-EL-A3H7 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H8                    TCGA-EL-A3MW 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3MX                    TCGA-EL-A3MY 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3MZ                    TCGA-EL-A3N2 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3N3                    TCGA-EM-A1CT 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1CU                    TCGA-EM-A1CV 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1CW                    TCGA-EM-A1YA 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YB                    TCGA-EM-A1YC 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YD                    TCGA-EM-A1YE 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22I                    TCGA-EM-A22J 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22L                    TCGA-EM-A22M 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22O                    TCGA-EM-A22Q 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CJ                    TCGA-EM-A2CK 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CL                    TCGA-EM-A2CN 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CO                    TCGA-EM-A2CP 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CQ                    TCGA-EM-A2CU 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2OV                    TCGA-EM-A2OY 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2P1                    TCGA-EM-A3AI 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AJ                    TCGA-EM-A3AL 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AN                    TCGA-EM-A3AO 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AP                    TCGA-EM-A3FJ 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3FL                    TCGA-EM-A3FN 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3FO                    TCGA-EM-A3FP 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A25G                    TCGA-ET-A25L 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A25M                    TCGA-ET-A25O 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2MY                    TCGA-ET-A2MZ 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2N0                    TCGA-ET-A2N1 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2N4                    TCGA-ET-A2N5 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39I                    TCGA-ET-A39J 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39L                    TCGA-ET-A39M 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39N                    TCGA-ET-A39P 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BT 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"DEL PEAK 11(8P23.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8P23.2) MUTATED        0      4      0      0
  DEL PEAK 11(8P23.2) WILD-TYPE    158    163     58    114
D16V5, multiclass
        clus
vv       DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                           0                           158
  CLUS_2                           4                           163
  CLUS_3                           0                            58
  CLUS_4                           0                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(8P23.2) MUTATED        0      4      0      0      0
  DEL PEAK 11(8P23.2) WILD-TYPE    104    130     86     95     78
D16V6, multiclass
        clus
vv       DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                           0                           104
  CLUS_2                           4                           130
  CLUS_3                           0                            86
  CLUS_4                           0                            95
  CLUS_5                           0                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8P23.2) MUTATED        0      2      0      2
  DEL PEAK 11(8P23.2) WILD-TYPE    165    143    119     67
D16V7, multiclass
        clus
vv       DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                           0                           165
  CLUS_2                           2                           143
  CLUS_3                           0                           119
  CLUS_4                           2                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P23.2) MUTATED        0      4      0
  DEL PEAK 11(8P23.2) WILD-TYPE    178    124    192
D16V8, multiclass
        clus
vv       DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                           0                           178
  CLUS_2                           4                           124
  CLUS_3                           0                           192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8P23.2) MUTATED        0      3      0      0
  DEL PEAK 11(8P23.2) WILD-TYPE    131    122    108    104
D16V9, multiclass
        clus
vv       DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                           0                           131
  CLUS_2                           3                           122
  CLUS_3                           0                           108
  CLUS_4                           0                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P23.2) MUTATED        0      3      0
  DEL PEAK 11(8P23.2) WILD-TYPE    163    117    185
D16V10, multiclass
        clus
vv       DEL PEAK 11(8P23.2) MUTATED DEL PEAK 11(8P23.2) WILD-TYPE
  CLUS_1                           0                           163
  CLUS_2                           3                           117
  CLUS_3                           0                           185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK 12(8P22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P22) MUTATED        0      0      4
  DEL PEAK 12(8P22) WILD-TYPE    132    138    225
D17V1, multiclass
        clus
vv       DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE
  CLUS_1                         0                         132
  CLUS_2                         0                         138
  CLUS_3                         4                         225
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(8P22) MUTATED        0      3      1      0      0
  DEL PEAK 12(8P22) WILD-TYPE     46    144     83     42    180
D17V2, multiclass
        clus
vv       DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE
  CLUS_1                         0                          46
  CLUS_2                         3                         144
  CLUS_3                         1                          83
  CLUS_4                         0                          42
  CLUS_5                         0                         180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P22) MUTATED        1      1      0      0
  DEL PEAK 12(8P22) WILD-TYPE     63     63     42     49
D17V3, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 12(8P22) MUTATED"
clus
  DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE 
                          2                         217 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3CL                  TCGA-EL-A3CM 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3CN                  TCGA-EL-A3CO 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3CP                  TCGA-EL-A3CR 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3CS                  TCGA-EL-A3CT 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3CU                  TCGA-EL-A3CV 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3CW                  TCGA-EL-A3CX 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3CY                  TCGA-EL-A3CZ 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3D0                  TCGA-EL-A3D1 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3D4                  TCGA-EL-A3D5 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3D6                  TCGA-EL-A3GO 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3GP                  TCGA-EL-A3GQ 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3GR                  TCGA-EL-A3GS 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3GU                  TCGA-EL-A3GV 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3GW                  TCGA-EL-A3GX 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3GY                  TCGA-EL-A3GZ 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3H1                  TCGA-EL-A3H2 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3H3                  TCGA-EL-A3H4 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3H5                  TCGA-EL-A3H7 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3H8                  TCGA-EL-A3MW 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3MX                  TCGA-EL-A3MY 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3MZ                  TCGA-EL-A3N2 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3N3                  TCGA-EM-A1CT 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A1CU                  TCGA-EM-A1CV 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A1CW                  TCGA-EM-A1YA 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A1YB                  TCGA-EM-A1YC 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A1YD                  TCGA-EM-A1YE 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A22I                  TCGA-EM-A22J 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A22L                  TCGA-EM-A22M 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A22O                  TCGA-EM-A22Q 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A2CJ                  TCGA-EM-A2CK 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A2CL                  TCGA-EM-A2CN 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A2CO                  TCGA-EM-A2CP 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A2CQ                  TCGA-EM-A2CU 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-FY-A3ON 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK 12(8P22) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 12(8P22) MUTATED        1      0      0      0      0      1      0
  DEL PEAK 12(8P22) WILD-TYPE     45     28     33     29     47     26      9
D17V4, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 12(8P22) MUTATED"
clus
  DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE 
                          2                         217 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3CL                  TCGA-EL-A3CM 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3CN                  TCGA-EL-A3CO 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3CP                  TCGA-EL-A3CR 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3CS                  TCGA-EL-A3CT 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3CU                  TCGA-EL-A3CV 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3CW                  TCGA-EL-A3CX 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3CY                  TCGA-EL-A3CZ 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3D0                  TCGA-EL-A3D1 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3D4                  TCGA-EL-A3D5 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3D6                  TCGA-EL-A3GO 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3GP                  TCGA-EL-A3GQ 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3GR                  TCGA-EL-A3GS 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3GU                  TCGA-EL-A3GV 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3GW                  TCGA-EL-A3GX 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3GY                  TCGA-EL-A3GZ 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3H1                  TCGA-EL-A3H2 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3H3                  TCGA-EL-A3H4 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3H5                  TCGA-EL-A3H7 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3H8                  TCGA-EL-A3MW 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3MX                  TCGA-EL-A3MY 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3MZ                  TCGA-EL-A3N2 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EL-A3N3                  TCGA-EM-A1CT 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A1CU                  TCGA-EM-A1CV 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A1CW                  TCGA-EM-A1YA 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A1YB                  TCGA-EM-A1YC 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A1YD                  TCGA-EM-A1YE 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A22I                  TCGA-EM-A22J 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A22L                  TCGA-EM-A22M 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A22O                  TCGA-EM-A22Q 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A2CJ                  TCGA-EM-A2CK 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A2CL                  TCGA-EM-A2CN 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A2CO                  TCGA-EM-A2CP 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A2CQ                  TCGA-EM-A2CU 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-FY-A3ON 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK 12(8P22) WILD-TYPE" "DEL PEAK 12(8P22) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK 12(8P22) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P22) MUTATED        0      4      0      0
  DEL PEAK 12(8P22) WILD-TYPE    158    163     58    114
D17V5, multiclass
        clus
vv       DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE
  CLUS_1                         0                         158
  CLUS_2                         4                         163
  CLUS_3                         0                          58
  CLUS_4                         0                         114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(8P22) MUTATED        0      4      0      0      0
  DEL PEAK 12(8P22) WILD-TYPE    104    130     86     95     78
D17V6, multiclass
        clus
vv       DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE
  CLUS_1                         0                         104
  CLUS_2                         4                         130
  CLUS_3                         0                          86
  CLUS_4                         0                          95
  CLUS_5                         0                          78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P22) MUTATED        0      2      0      2
  DEL PEAK 12(8P22) WILD-TYPE    165    143    119     67
D17V7, multiclass
        clus
vv       DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE
  CLUS_1                         0                         165
  CLUS_2                         2                         143
  CLUS_3                         0                         119
  CLUS_4                         2                          67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P22) MUTATED        0      4      0
  DEL PEAK 12(8P22) WILD-TYPE    178    124    192
D17V8, multiclass
        clus
vv       DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE
  CLUS_1                         0                         178
  CLUS_2                         4                         124
  CLUS_3                         0                         192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P22) MUTATED        0      3      0      0
  DEL PEAK 12(8P22) WILD-TYPE    131    122    108    104
D17V9, multiclass
        clus
vv       DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE
  CLUS_1                         0                         131
  CLUS_2                         3                         122
  CLUS_3                         0                         108
  CLUS_4                         0                         104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P22) MUTATED        0      3      0
  DEL PEAK 12(8P22) WILD-TYPE    163    117    185
D17V10, multiclass
        clus
vv       DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE
  CLUS_1                         0                         163
  CLUS_2                         3                         117
  CLUS_3                         0                         185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK 13(8P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P12) MUTATED        0      0      4
  DEL PEAK 13(8P12) WILD-TYPE    132    138    225
D18V1, multiclass
        clus
vv       DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE
  CLUS_1                         0                         132
  CLUS_2                         0                         138
  CLUS_3                         4                         225
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(8P12) MUTATED        0      3      1      0      0
  DEL PEAK 13(8P12) WILD-TYPE     46    144     83     42    180
D18V2, multiclass
        clus
vv       DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE
  CLUS_1                         0                          46
  CLUS_2                         3                         144
  CLUS_3                         1                          83
  CLUS_4                         0                          42
  CLUS_5                         0                         180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P12) MUTATED        1      1      0      0
  DEL PEAK 13(8P12) WILD-TYPE     63     63     42     49
D18V3, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 13(8P12) MUTATED"
clus
  DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE 
                          2                         217 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3CL                  TCGA-EL-A3CM 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3CN                  TCGA-EL-A3CO 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3CP                  TCGA-EL-A3CR 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3CS                  TCGA-EL-A3CT 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3CU                  TCGA-EL-A3CV 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3CW                  TCGA-EL-A3CX 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3CY                  TCGA-EL-A3CZ 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3D0                  TCGA-EL-A3D1 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3D4                  TCGA-EL-A3D5 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3D6                  TCGA-EL-A3GO 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3GP                  TCGA-EL-A3GQ 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3GR                  TCGA-EL-A3GS 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3GU                  TCGA-EL-A3GV 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3GW                  TCGA-EL-A3GX 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3GY                  TCGA-EL-A3GZ 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3H1                  TCGA-EL-A3H2 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3H3                  TCGA-EL-A3H4 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3H5                  TCGA-EL-A3H7 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3H8                  TCGA-EL-A3MW 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3MX                  TCGA-EL-A3MY 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3MZ                  TCGA-EL-A3N2 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3N3                  TCGA-EM-A1CT 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A1CU                  TCGA-EM-A1CV 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A1CW                  TCGA-EM-A1YA 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A1YB                  TCGA-EM-A1YC 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A1YD                  TCGA-EM-A1YE 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A22I                  TCGA-EM-A22J 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A22L                  TCGA-EM-A22M 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A22O                  TCGA-EM-A22Q 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A2CJ                  TCGA-EM-A2CK 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A2CL                  TCGA-EM-A2CN 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A2CO                  TCGA-EM-A2CP 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A2CQ                  TCGA-EM-A2CU 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-FY-A3ON 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK 13(8P12) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(8P12) MUTATED        1      0      0      0      0      1      0
  DEL PEAK 13(8P12) WILD-TYPE     45     28     33     29     47     26      9
D18V4, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 13(8P12) MUTATED"
clus
  DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE 
                          2                         217 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3CL                  TCGA-EL-A3CM 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3CN                  TCGA-EL-A3CO 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3CP                  TCGA-EL-A3CR 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3CS                  TCGA-EL-A3CT 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3CU                  TCGA-EL-A3CV 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3CW                  TCGA-EL-A3CX 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3CY                  TCGA-EL-A3CZ 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3D0                  TCGA-EL-A3D1 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3D4                  TCGA-EL-A3D5 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3D6                  TCGA-EL-A3GO 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3GP                  TCGA-EL-A3GQ 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3GR                  TCGA-EL-A3GS 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3GU                  TCGA-EL-A3GV 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3GW                  TCGA-EL-A3GX 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3GY                  TCGA-EL-A3GZ 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3H1                  TCGA-EL-A3H2 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3H3                  TCGA-EL-A3H4 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3H5                  TCGA-EL-A3H7 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3H8                  TCGA-EL-A3MW 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3MX                  TCGA-EL-A3MY 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3MZ                  TCGA-EL-A3N2 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EL-A3N3                  TCGA-EM-A1CT 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A1CU                  TCGA-EM-A1CV 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A1CW                  TCGA-EM-A1YA 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A1YB                  TCGA-EM-A1YC 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A1YD                  TCGA-EM-A1YE 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A22I                  TCGA-EM-A22J 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A22L                  TCGA-EM-A22M 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A22O                  TCGA-EM-A22Q 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A2CJ                  TCGA-EM-A2CK 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A2CL                  TCGA-EM-A2CN 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A2CO                  TCGA-EM-A2CP 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A2CQ                  TCGA-EM-A2CU 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-FY-A3ON 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK 13(8P12) WILD-TYPE" "DEL PEAK 13(8P12) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK 13(8P12) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P12) MUTATED        0      4      0      0
  DEL PEAK 13(8P12) WILD-TYPE    158    163     58    114
D18V5, multiclass
        clus
vv       DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE
  CLUS_1                         0                         158
  CLUS_2                         4                         163
  CLUS_3                         0                          58
  CLUS_4                         0                         114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(8P12) MUTATED        0      4      0      0      0
  DEL PEAK 13(8P12) WILD-TYPE    104    130     86     95     78
D18V6, multiclass
        clus
vv       DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE
  CLUS_1                         0                         104
  CLUS_2                         4                         130
  CLUS_3                         0                          86
  CLUS_4                         0                          95
  CLUS_5                         0                          78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P12) MUTATED        0      2      0      2
  DEL PEAK 13(8P12) WILD-TYPE    165    143    119     67
D18V7, multiclass
        clus
vv       DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE
  CLUS_1                         0                         165
  CLUS_2                         2                         143
  CLUS_3                         0                         119
  CLUS_4                         2                          67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P12) MUTATED        0      4      0
  DEL PEAK 13(8P12) WILD-TYPE    178    124    192
D18V8, multiclass
        clus
vv       DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE
  CLUS_1                         0                         178
  CLUS_2                         4                         124
  CLUS_3                         0                         192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P12) MUTATED        0      3      0      0
  DEL PEAK 13(8P12) WILD-TYPE    131    122    108    104
D18V9, multiclass
        clus
vv       DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE
  CLUS_1                         0                         131
  CLUS_2                         3                         122
  CLUS_3                         0                         108
  CLUS_4                         0                         104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P12) MUTATED        0      3      0
  DEL PEAK 13(8P12) WILD-TYPE    163    117    185
D18V10, multiclass
        clus
vv       DEL PEAK 13(8P12) MUTATED DEL PEAK 13(8P12) WILD-TYPE
  CLUS_1                         0                         163
  CLUS_2                         3                         117
  CLUS_3                         0                         185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 14(8Q24.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8Q24.22) MUTATED        0      1      6
  DEL PEAK 14(8Q24.22) WILD-TYPE    132    137    223
D19V1, multiclass
        clus
vv       DEL PEAK 14(8Q24.22) MUTATED DEL PEAK 14(8Q24.22) WILD-TYPE
  CLUS_1                            0                            132
  CLUS_2                            1                            137
  CLUS_3                            6                            223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8Q24.22) MUTATED        0      6      1      0      0
  DEL PEAK 14(8Q24.22) WILD-TYPE     46    141     83     42    180
D19V2, multiclass
        clus
vv       DEL PEAK 14(8Q24.22) MUTATED DEL PEAK 14(8Q24.22) WILD-TYPE
  CLUS_1                            0                             46
  CLUS_2                            6                            141
  CLUS_3                            1                             83
  CLUS_4                            0                             42
  CLUS_5                            0                            180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8Q24.22) MUTATED        1      2      1      0
  DEL PEAK 14(8Q24.22) WILD-TYPE     63     62     41     49
D19V3, multiclass
        clus
vv       DEL PEAK 14(8Q24.22) MUTATED DEL PEAK 14(8Q24.22) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            2                             62
  CLUS_3                            1                             41
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8Q24.22) MUTATED        2      0      0      0      0      2
  DEL PEAK 14(8Q24.22) WILD-TYPE     44     28     33     29     47     25
                                vv
clus                             CLUS_7
  DEL PEAK 14(8Q24.22) MUTATED        0
  DEL PEAK 14(8Q24.22) WILD-TYPE      9
D19V4, multiclass
        clus
vv       DEL PEAK 14(8Q24.22) MUTATED DEL PEAK 14(8Q24.22) WILD-TYPE
  CLUS_1                            2                             44
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            0                             29
  CLUS_5                            0                             47
  CLUS_6                            2                             25
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8Q24.22) MUTATED        0      7      0      0
  DEL PEAK 14(8Q24.22) WILD-TYPE    158    160     58    114
D19V5, multiclass
        clus
vv       DEL PEAK 14(8Q24.22) MUTATED DEL PEAK 14(8Q24.22) WILD-TYPE
  CLUS_1                            0                            158
  CLUS_2                            7                            160
  CLUS_3                            0                             58
  CLUS_4                            0                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8Q24.22) MUTATED        0      7      0      0      0
  DEL PEAK 14(8Q24.22) WILD-TYPE    104    127     86     95     78
D19V6, multiclass
        clus
vv       DEL PEAK 14(8Q24.22) MUTATED DEL PEAK 14(8Q24.22) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                            7                            127
  CLUS_3                            0                             86
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8Q24.22) MUTATED        0      5      0      2
  DEL PEAK 14(8Q24.22) WILD-TYPE    165    140    119     67
D19V7, multiclass
        clus
vv       DEL PEAK 14(8Q24.22) MUTATED DEL PEAK 14(8Q24.22) WILD-TYPE
  CLUS_1                            0                            165
  CLUS_2                            5                            140
  CLUS_3                            0                            119
  CLUS_4                            2                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8Q24.22) MUTATED        0      7      0
  DEL PEAK 14(8Q24.22) WILD-TYPE    178    121    192
D19V8, multiclass
        clus
vv       DEL PEAK 14(8Q24.22) MUTATED DEL PEAK 14(8Q24.22) WILD-TYPE
  CLUS_1                            0                            178
  CLUS_2                            7                            121
  CLUS_3                            0                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8Q24.22) MUTATED        0      6      0      0
  DEL PEAK 14(8Q24.22) WILD-TYPE    131    119    108    104
D19V9, multiclass
        clus
vv       DEL PEAK 14(8Q24.22) MUTATED DEL PEAK 14(8Q24.22) WILD-TYPE
  CLUS_1                            0                            131
  CLUS_2                            6                            119
  CLUS_3                            0                            108
  CLUS_4                            0                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8Q24.22) MUTATED        0      6      0
  DEL PEAK 14(8Q24.22) WILD-TYPE    163    114    185
D19V10, multiclass
        clus
vv       DEL PEAK 14(8Q24.22) MUTATED DEL PEAK 14(8Q24.22) WILD-TYPE
  CLUS_1                            0                            163
  CLUS_2                            6                            114
  CLUS_3                            0                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 15(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED       10      1      9
  DEL PEAK 15(9P21.3) WILD-TYPE    122    137    220
D20V1, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                          10                           122
  CLUS_2                           1                           137
  CLUS_3                           9                           220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P21.3) MUTATED        2     11      5      0      2
  DEL PEAK 15(9P21.3) WILD-TYPE     44    136     79     42    178
D20V2, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           2                            44
  CLUS_2                          11                           136
  CLUS_3                           5                            79
  CLUS_4                           0                            42
  CLUS_5                           2                           178
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED        1      2      1      2
  DEL PEAK 15(9P21.3) WILD-TYPE     63     62     41     47
D20V3, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           1                            63
  CLUS_2                           2                            62
  CLUS_3                           1                            41
  CLUS_4                           2                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P21.3) MUTATED        1      0      0      1      2      2
  DEL PEAK 15(9P21.3) WILD-TYPE     45     28     33     28     45     25
                               vv
clus                            CLUS_7
  DEL PEAK 15(9P21.3) MUTATED        0
  DEL PEAK 15(9P21.3) WILD-TYPE      9
D20V4, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           1                            45
  CLUS_2                           0                            28
  CLUS_3                           0                            33
  CLUS_4                           1                            28
  CLUS_5                           2                            45
  CLUS_6                           2                            25
  CLUS_7                           0                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED        3     12      3      2
  DEL PEAK 15(9P21.3) WILD-TYPE    155    155     55    112
D20V5, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           3                           155
  CLUS_2                          12                           155
  CLUS_3                           3                            55
  CLUS_4                           2                           112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P21.3) MUTATED        4     12      1      2      1
  DEL PEAK 15(9P21.3) WILD-TYPE    100    122     85     93     77
D20V6, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           4                           100
  CLUS_2                          12                           122
  CLUS_3                           1                            85
  CLUS_4                           2                            93
  CLUS_5                           1                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED        9      8      0      3
  DEL PEAK 15(9P21.3) WILD-TYPE    156    137    119     66
D20V7, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           9                           156
  CLUS_2                           8                           137
  CLUS_3                           0                           119
  CLUS_4                           3                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED        8     11      1
  DEL PEAK 15(9P21.3) WILD-TYPE    170    117    191
D20V8, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           8                           170
  CLUS_2                          11                           117
  CLUS_3                           1                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED        8      9      0      1
  DEL PEAK 15(9P21.3) WILD-TYPE    123    116    108    103
D20V9, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           8                           123
  CLUS_2                           9                           116
  CLUS_3                           0                           108
  CLUS_4                           1                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED        8      9      1
  DEL PEAK 15(9P21.3) WILD-TYPE    155    111    184
D20V10, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           8                           155
  CLUS_2                           9                           111
  CLUS_3                           1                           184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK 16(9Q22.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q22.33) MUTATED       15      1     11
  DEL PEAK 16(9Q22.33) WILD-TYPE    117    137    218
D21V1, multiclass
        clus
vv       DEL PEAK 16(9Q22.33) MUTATED DEL PEAK 16(9Q22.33) WILD-TYPE
  CLUS_1                           15                            117
  CLUS_2                            1                            137
  CLUS_3                           11                            218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9Q22.33) MUTATED        4     12      6      0      5
  DEL PEAK 16(9Q22.33) WILD-TYPE     42    135     78     42    175
D21V2, multiclass
        clus
vv       DEL PEAK 16(9Q22.33) MUTATED DEL PEAK 16(9Q22.33) WILD-TYPE
  CLUS_1                            4                             42
  CLUS_2                           12                            135
  CLUS_3                            6                             78
  CLUS_4                            0                             42
  CLUS_5                            5                            175
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9Q22.33) MUTATED        1      4      1      2
  DEL PEAK 16(9Q22.33) WILD-TYPE     63     60     41     47
D21V3, multiclass
        clus
vv       DEL PEAK 16(9Q22.33) MUTATED DEL PEAK 16(9Q22.33) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            4                             60
  CLUS_3                            1                             41
  CLUS_4                            2                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9Q22.33) MUTATED        1      0      0      1      2      4
  DEL PEAK 16(9Q22.33) WILD-TYPE     45     28     33     28     45     23
                                vv
clus                             CLUS_7
  DEL PEAK 16(9Q22.33) MUTATED        0
  DEL PEAK 16(9Q22.33) WILD-TYPE      9
D21V4, multiclass
        clus
vv       DEL PEAK 16(9Q22.33) MUTATED DEL PEAK 16(9Q22.33) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            1                             28
  CLUS_5                            2                             45
  CLUS_6                            4                             23
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9Q22.33) MUTATED        7     13      4      3
  DEL PEAK 16(9Q22.33) WILD-TYPE    151    154     54    111
D21V5, multiclass
        clus
vv       DEL PEAK 16(9Q22.33) MUTATED DEL PEAK 16(9Q22.33) WILD-TYPE
  CLUS_1                            7                            151
  CLUS_2                           13                            154
  CLUS_3                            4                             54
  CLUS_4                            3                            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9Q22.33) MUTATED        8     13      1      3      2
  DEL PEAK 16(9Q22.33) WILD-TYPE     96    121     85     92     76
D21V6, multiclass
        clus
vv       DEL PEAK 16(9Q22.33) MUTATED DEL PEAK 16(9Q22.33) WILD-TYPE
  CLUS_1                            8                             96
  CLUS_2                           13                            121
  CLUS_3                            1                             85
  CLUS_4                            3                             92
  CLUS_5                            2                             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9Q22.33) MUTATED       13      9      1      4
  DEL PEAK 16(9Q22.33) WILD-TYPE    152    136    118     65
D21V7, multiclass
        clus
vv       DEL PEAK 16(9Q22.33) MUTATED DEL PEAK 16(9Q22.33) WILD-TYPE
  CLUS_1                           13                            152
  CLUS_2                            9                            136
  CLUS_3                            1                            118
  CLUS_4                            4                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q22.33) MUTATED       12     12      3
  DEL PEAK 16(9Q22.33) WILD-TYPE    166    116    189
D21V8, multiclass
        clus
vv       DEL PEAK 16(9Q22.33) MUTATED DEL PEAK 16(9Q22.33) WILD-TYPE
  CLUS_1                           12                            166
  CLUS_2                           12                            116
  CLUS_3                            3                            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9Q22.33) MUTATED       12     10      1      2
  DEL PEAK 16(9Q22.33) WILD-TYPE    119    115    107    102
D21V9, multiclass
        clus
vv       DEL PEAK 16(9Q22.33) MUTATED DEL PEAK 16(9Q22.33) WILD-TYPE
  CLUS_1                           12                            119
  CLUS_2                           10                            115
  CLUS_3                            1                            107
  CLUS_4                            2                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9Q22.33) MUTATED       12     10      3
  DEL PEAK 16(9Q22.33) WILD-TYPE    151    110    182
D21V10, multiclass
        clus
vv       DEL PEAK 16(9Q22.33) MUTATED DEL PEAK 16(9Q22.33) WILD-TYPE
  CLUS_1                           12                            151
  CLUS_2                           10                            110
  CLUS_3                            3                            182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK 17(10P12.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10P12.31) MUTATED        1      0      6
  DEL PEAK 17(10P12.31) WILD-TYPE    131    138    223
D22V1, multiclass
        clus
vv       DEL PEAK 17(10P12.31) MUTATED DEL PEAK 17(10P12.31) WILD-TYPE
  CLUS_1                             1                             131
  CLUS_2                             0                             138
  CLUS_3                             6                             223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10P12.31) MUTATED        0      5      1      0      1
  DEL PEAK 17(10P12.31) WILD-TYPE     46    142     83     42    179
D22V2, multiclass
        clus
vv       DEL PEAK 17(10P12.31) MUTATED DEL PEAK 17(10P12.31) WILD-TYPE
  CLUS_1                             0                              46
  CLUS_2                             5                             142
  CLUS_3                             1                              83
  CLUS_4                             0                              42
  CLUS_5                             1                             179
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10P12.31) MUTATED        1      0      1      1
  DEL PEAK 17(10P12.31) WILD-TYPE     63     64     41     48
D22V3, multiclass
        clus
vv       DEL PEAK 17(10P12.31) MUTATED DEL PEAK 17(10P12.31) WILD-TYPE
  CLUS_1                             1                              63
  CLUS_2                             0                              64
  CLUS_3                             1                              41
  CLUS_4                             1                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10P12.31) MUTATED        1      0      0      2      0      0
  DEL PEAK 17(10P12.31) WILD-TYPE     45     28     33     27     47     27
                                 vv
clus                              CLUS_7
  DEL PEAK 17(10P12.31) MUTATED        0
  DEL PEAK 17(10P12.31) WILD-TYPE      9
D22V4, multiclass
        clus
vv       DEL PEAK 17(10P12.31) MUTATED DEL PEAK 17(10P12.31) WILD-TYPE
  CLUS_1                             1                              45
  CLUS_2                             0                              28
  CLUS_3                             0                              33
  CLUS_4                             2                              27
  CLUS_5                             0                              47
  CLUS_6                             0                              27
  CLUS_7                             0                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10P12.31) MUTATED        0      6      0      1
  DEL PEAK 17(10P12.31) WILD-TYPE    158    161     58    113
D22V5, multiclass
        clus
vv       DEL PEAK 17(10P12.31) MUTATED DEL PEAK 17(10P12.31) WILD-TYPE
  CLUS_1                             0                             158
  CLUS_2                             6                             161
  CLUS_3                             0                              58
  CLUS_4                             1                             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10P12.31) MUTATED        0      6      0      1      0
  DEL PEAK 17(10P12.31) WILD-TYPE    104    128     86     94     78
D22V6, multiclass
        clus
vv       DEL PEAK 17(10P12.31) MUTATED DEL PEAK 17(10P12.31) WILD-TYPE
  CLUS_1                             0                             104
  CLUS_2                             6                             128
  CLUS_3                             0                              86
  CLUS_4                             1                              94
  CLUS_5                             0                              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10P12.31) MUTATED        2      4      0      1
  DEL PEAK 17(10P12.31) WILD-TYPE    163    141    119     68
D22V7, multiclass
        clus
vv       DEL PEAK 17(10P12.31) MUTATED DEL PEAK 17(10P12.31) WILD-TYPE
  CLUS_1                             2                             163
  CLUS_2                             4                             141
  CLUS_3                             0                             119
  CLUS_4                             1                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10P12.31) MUTATED        1      6      0
  DEL PEAK 17(10P12.31) WILD-TYPE    177    122    192
D22V8, multiclass
        clus
vv       DEL PEAK 17(10P12.31) MUTATED DEL PEAK 17(10P12.31) WILD-TYPE
  CLUS_1                             1                             177
  CLUS_2                             6                             122
  CLUS_3                             0                             192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10P12.31) MUTATED        2      5      0      0
  DEL PEAK 17(10P12.31) WILD-TYPE    129    120    108    104
D22V9, multiclass
        clus
vv       DEL PEAK 17(10P12.31) MUTATED DEL PEAK 17(10P12.31) WILD-TYPE
  CLUS_1                             2                             129
  CLUS_2                             5                             120
  CLUS_3                             0                             108
  CLUS_4                             0                             104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10P12.31) MUTATED        1      6      0
  DEL PEAK 17(10P12.31) WILD-TYPE    162    114    185
D22V10, multiclass
        clus
vv       DEL PEAK 17(10P12.31) MUTATED DEL PEAK 17(10P12.31) WILD-TYPE
  CLUS_1                             1                             162
  CLUS_2                             6                             114
  CLUS_3                             0                             185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK 18(10Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q21.2) MUTATED        1      1     10
  DEL PEAK 18(10Q21.2) WILD-TYPE    131    137    219
D23V1, multiclass
        clus
vv       DEL PEAK 18(10Q21.2) MUTATED DEL PEAK 18(10Q21.2) WILD-TYPE
  CLUS_1                            1                            131
  CLUS_2                            1                            137
  CLUS_3                           10                            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q21.2) MUTATED        0      5      4      0      3
  DEL PEAK 18(10Q21.2) WILD-TYPE     46    142     80     42    177
D23V2, multiclass
        clus
vv       DEL PEAK 18(10Q21.2) MUTATED DEL PEAK 18(10Q21.2) WILD-TYPE
  CLUS_1                            0                             46
  CLUS_2                            5                            142
  CLUS_3                            4                             80
  CLUS_4                            0                             42
  CLUS_5                            3                            177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q21.2) MUTATED        3      0      2      1
  DEL PEAK 18(10Q21.2) WILD-TYPE     61     64     40     48
D23V3, multiclass
        clus
vv       DEL PEAK 18(10Q21.2) MUTATED DEL PEAK 18(10Q21.2) WILD-TYPE
  CLUS_1                            3                             61
  CLUS_2                            0                             64
  CLUS_3                            2                             40
  CLUS_4                            1                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10Q21.2) MUTATED        2      1      0      2      1      0
  DEL PEAK 18(10Q21.2) WILD-TYPE     44     27     33     27     46     27
                                vv
clus                             CLUS_7
  DEL PEAK 18(10Q21.2) MUTATED        0
  DEL PEAK 18(10Q21.2) WILD-TYPE      9
D23V4, multiclass
        clus
vv       DEL PEAK 18(10Q21.2) MUTATED DEL PEAK 18(10Q21.2) WILD-TYPE
  CLUS_1                            2                             44
  CLUS_2                            1                             27
  CLUS_3                            0                             33
  CLUS_4                            2                             27
  CLUS_5                            1                             46
  CLUS_6                            0                             27
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q21.2) MUTATED        0      7      2      3
  DEL PEAK 18(10Q21.2) WILD-TYPE    158    160     56    111
D23V5, multiclass
        clus
vv       DEL PEAK 18(10Q21.2) MUTATED DEL PEAK 18(10Q21.2) WILD-TYPE
  CLUS_1                            0                            158
  CLUS_2                            7                            160
  CLUS_3                            2                             56
  CLUS_4                            3                            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q21.2) MUTATED        0      6      3      3      0
  DEL PEAK 18(10Q21.2) WILD-TYPE    104    128     83     92     78
D23V6, multiclass
        clus
vv       DEL PEAK 18(10Q21.2) MUTATED DEL PEAK 18(10Q21.2) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                            6                            128
  CLUS_3                            3                             83
  CLUS_4                            3                             92
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q21.2) MUTATED        4      6      1      1
  DEL PEAK 18(10Q21.2) WILD-TYPE    161    139    118     68
D23V7, multiclass
        clus
vv       DEL PEAK 18(10Q21.2) MUTATED DEL PEAK 18(10Q21.2) WILD-TYPE
  CLUS_1                            4                            161
  CLUS_2                            6                            139
  CLUS_3                            1                            118
  CLUS_4                            1                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q21.2) MUTATED        3      6      3
  DEL PEAK 18(10Q21.2) WILD-TYPE    175    122    189
D23V8, multiclass
        clus
vv       DEL PEAK 18(10Q21.2) MUTATED DEL PEAK 18(10Q21.2) WILD-TYPE
  CLUS_1                            3                            175
  CLUS_2                            6                            122
  CLUS_3                            3                            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q21.2) MUTATED        5      6      1      0
  DEL PEAK 18(10Q21.2) WILD-TYPE    126    119    107    104
D23V9, multiclass
        clus
vv       DEL PEAK 18(10Q21.2) MUTATED DEL PEAK 18(10Q21.2) WILD-TYPE
  CLUS_1                            5                            126
  CLUS_2                            6                            119
  CLUS_3                            1                            107
  CLUS_4                            0                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q21.2) MUTATED        4      7      1
  DEL PEAK 18(10Q21.2) WILD-TYPE    159    113    184
D23V10, multiclass
        clus
vv       DEL PEAK 18(10Q21.2) MUTATED DEL PEAK 18(10Q21.2) WILD-TYPE
  CLUS_1                            4                            159
  CLUS_2                            7                            113
  CLUS_3                            1                            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK 19(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED        1      2      9
  DEL PEAK 19(10Q23.31) WILD-TYPE    131    136    220
D24V1, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                             1                             131
  CLUS_2                             2                             136
  CLUS_3                             9                             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(10Q23.31) MUTATED        0      8      2      0      2
  DEL PEAK 19(10Q23.31) WILD-TYPE     46    139     82     42    178
D24V2, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                             0                              46
  CLUS_2                             8                             139
  CLUS_3                             2                              82
  CLUS_4                             0                              42
  CLUS_5                             2                             178
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED        5      0      1      0
  DEL PEAK 19(10Q23.31) WILD-TYPE     59     64     41     49
D24V3, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                             5                              59
  CLUS_2                             0                              64
  CLUS_3                             1                              41
  CLUS_4                             0                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.31) MUTATED        4      1      0      1      0      0
  DEL PEAK 19(10Q23.31) WILD-TYPE     42     27     33     28     47     27
                                 vv
clus                              CLUS_7
  DEL PEAK 19(10Q23.31) MUTATED        0
  DEL PEAK 19(10Q23.31) WILD-TYPE      9
D24V4, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                             4                              42
  CLUS_2                             1                              27
  CLUS_3                             0                              33
  CLUS_4                             1                              28
  CLUS_5                             0                              47
  CLUS_6                             0                              27
  CLUS_7                             0                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED        0     10      0      2
  DEL PEAK 19(10Q23.31) WILD-TYPE    158    157     58    112
D24V5, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                             0                             158
  CLUS_2                            10                             157
  CLUS_3                             0                              58
  CLUS_4                             2                             112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(10Q23.31) MUTATED        0      9      1      2      0
  DEL PEAK 19(10Q23.31) WILD-TYPE    104    125     85     93     78
D24V6, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                             0                             104
  CLUS_2                             9                             125
  CLUS_3                             1                              85
  CLUS_4                             2                              93
  CLUS_5                             0                              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED        3      8      0      1
  DEL PEAK 19(10Q23.31) WILD-TYPE    162    137    119     68
D24V7, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                             3                             162
  CLUS_2                             8                             137
  CLUS_3                             0                             119
  CLUS_4                             1                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED        2      9      1
  DEL PEAK 19(10Q23.31) WILD-TYPE    176    119    191
D24V8, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                             2                             176
  CLUS_2                             9                             119
  CLUS_3                             1                             191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED        3      8      1      0
  DEL PEAK 19(10Q23.31) WILD-TYPE    128    117    107    104
D24V9, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                             3                             128
  CLUS_2                             8                             117
  CLUS_3                             1                             107
  CLUS_4                             0                             104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED        2      9      1
  DEL PEAK 19(10Q23.31) WILD-TYPE    161    111    184
D24V10, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                             2                             161
  CLUS_2                             9                             111
  CLUS_3                             1                             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK 20(13Q12.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.3) MUTATED        3      0     13
  DEL PEAK 20(13Q12.3) WILD-TYPE    129    138    216
D25V1, multiclass
        clus
vv       DEL PEAK 20(13Q12.3) MUTATED DEL PEAK 20(13Q12.3) WILD-TYPE
  CLUS_1                            3                            129
  CLUS_2                            0                            138
  CLUS_3                           13                            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(13Q12.3) MUTATED        0     11      3      1      1
  DEL PEAK 20(13Q12.3) WILD-TYPE     46    136     81     41    179
D25V2, multiclass
        clus
vv       DEL PEAK 20(13Q12.3) MUTATED DEL PEAK 20(13Q12.3) WILD-TYPE
  CLUS_1                            0                             46
  CLUS_2                           11                            136
  CLUS_3                            3                             81
  CLUS_4                            1                             41
  CLUS_5                            1                            179
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q12.3) MUTATED        1      1      4      1
  DEL PEAK 20(13Q12.3) WILD-TYPE     63     63     38     48
D25V3, multiclass
        clus
vv       DEL PEAK 20(13Q12.3) MUTATED DEL PEAK 20(13Q12.3) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            1                             63
  CLUS_3                            4                             38
  CLUS_4                            1                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(13Q12.3) MUTATED        1      0      0      4      1      1
  DEL PEAK 20(13Q12.3) WILD-TYPE     45     28     33     25     46     26
                                vv
clus                             CLUS_7
  DEL PEAK 20(13Q12.3) MUTATED        0
  DEL PEAK 20(13Q12.3) WILD-TYPE      9
D25V4, multiclass
        clus
vv       DEL PEAK 20(13Q12.3) MUTATED DEL PEAK 20(13Q12.3) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            4                             25
  CLUS_5                            1                             46
  CLUS_6                            1                             26
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q12.3) MUTATED        0     11      3      2
  DEL PEAK 20(13Q12.3) WILD-TYPE    158    156     55    112
D25V5, multiclass
        clus
vv       DEL PEAK 20(13Q12.3) MUTATED DEL PEAK 20(13Q12.3) WILD-TYPE
  CLUS_1                            0                            158
  CLUS_2                           11                            156
  CLUS_3                            3                             55
  CLUS_4                            2                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(13Q12.3) MUTATED        1     10      3      2      0
  DEL PEAK 20(13Q12.3) WILD-TYPE    103    124     83     93     78
D25V6, multiclass
        clus
vv       DEL PEAK 20(13Q12.3) MUTATED DEL PEAK 20(13Q12.3) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                           10                            124
  CLUS_3                            3                             83
  CLUS_4                            2                             93
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q12.3) MUTATED        3      8      3      2
  DEL PEAK 20(13Q12.3) WILD-TYPE    162    137    116     67
D25V7, multiclass
        clus
vv       DEL PEAK 20(13Q12.3) MUTATED DEL PEAK 20(13Q12.3) WILD-TYPE
  CLUS_1                            3                            162
  CLUS_2                            8                            137
  CLUS_3                            3                            116
  CLUS_4                            2                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.3) MUTATED        3     10      3
  DEL PEAK 20(13Q12.3) WILD-TYPE    175    118    189
D25V8, multiclass
        clus
vv       DEL PEAK 20(13Q12.3) MUTATED DEL PEAK 20(13Q12.3) WILD-TYPE
  CLUS_1                            3                            175
  CLUS_2                           10                            118
  CLUS_3                            3                            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q12.3) MUTATED        3     10      2      1
  DEL PEAK 20(13Q12.3) WILD-TYPE    128    115    106    103
D25V9, multiclass
        clus
vv       DEL PEAK 20(13Q12.3) MUTATED DEL PEAK 20(13Q12.3) WILD-TYPE
  CLUS_1                            3                            128
  CLUS_2                           10                            115
  CLUS_3                            2                            106
  CLUS_4                            1                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.3) MUTATED        2     10      4
  DEL PEAK 20(13Q12.3) WILD-TYPE    161    110    181
D25V10, multiclass
        clus
vv       DEL PEAK 20(13Q12.3) MUTATED DEL PEAK 20(13Q12.3) WILD-TYPE
  CLUS_1                            2                            161
  CLUS_2                           10                            110
  CLUS_3                            4                            181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 21(13Q14.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.3) MUTATED        5      0     15
  DEL PEAK 21(13Q14.3) WILD-TYPE    127    138    214
D26V1, multiclass
        clus
vv       DEL PEAK 21(13Q14.3) MUTATED DEL PEAK 21(13Q14.3) WILD-TYPE
  CLUS_1                            5                            127
  CLUS_2                            0                            138
  CLUS_3                           15                            214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(13Q14.3) MUTATED        0     12      3      1      4
  DEL PEAK 21(13Q14.3) WILD-TYPE     46    135     81     41    176
D26V2, multiclass
        clus
vv       DEL PEAK 21(13Q14.3) MUTATED DEL PEAK 21(13Q14.3) WILD-TYPE
  CLUS_1                            0                             46
  CLUS_2                           12                            135
  CLUS_3                            3                             81
  CLUS_4                            1                             41
  CLUS_5                            4                            176
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.3) MUTATED        1      2      6      2
  DEL PEAK 21(13Q14.3) WILD-TYPE     63     62     36     47
D26V3, multiclass
        clus
vv       DEL PEAK 21(13Q14.3) MUTATED DEL PEAK 21(13Q14.3) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            2                             62
  CLUS_3                            6                             36
  CLUS_4                            2                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(13Q14.3) MUTATED        2      0      0      4      4      1
  DEL PEAK 21(13Q14.3) WILD-TYPE     44     28     33     25     43     26
                                vv
clus                             CLUS_7
  DEL PEAK 21(13Q14.3) MUTATED        0
  DEL PEAK 21(13Q14.3) WILD-TYPE      9
D26V4, multiclass
        clus
vv       DEL PEAK 21(13Q14.3) MUTATED DEL PEAK 21(13Q14.3) WILD-TYPE
  CLUS_1                            2                             44
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            4                             25
  CLUS_5                            4                             43
  CLUS_6                            1                             26
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.3) MUTATED        0     12      3      5
  DEL PEAK 21(13Q14.3) WILD-TYPE    158    155     55    109
D26V5, multiclass
        clus
vv       DEL PEAK 21(13Q14.3) MUTATED DEL PEAK 21(13Q14.3) WILD-TYPE
  CLUS_1                            0                            158
  CLUS_2                           12                            155
  CLUS_3                            3                             55
  CLUS_4                            5                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(13Q14.3) MUTATED        1     12      2      5      0
  DEL PEAK 21(13Q14.3) WILD-TYPE    103    122     84     90     78
D26V6, multiclass
        clus
vv       DEL PEAK 21(13Q14.3) MUTATED DEL PEAK 21(13Q14.3) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                           12                            122
  CLUS_3                            2                             84
  CLUS_4                            5                             90
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.3) MUTATED        3      9      6      2
  DEL PEAK 21(13Q14.3) WILD-TYPE    162    136    113     67
D26V7, multiclass
        clus
vv       DEL PEAK 21(13Q14.3) MUTATED DEL PEAK 21(13Q14.3) WILD-TYPE
  CLUS_1                            3                            162
  CLUS_2                            9                            136
  CLUS_3                            6                            113
  CLUS_4                            2                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.3) MUTATED        2     12      6
  DEL PEAK 21(13Q14.3) WILD-TYPE    176    116    186
D26V8, multiclass
        clus
vv       DEL PEAK 21(13Q14.3) MUTATED DEL PEAK 21(13Q14.3) WILD-TYPE
  CLUS_1                            2                            176
  CLUS_2                           12                            116
  CLUS_3                            6                            186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.3) MUTATED        2     12      4      1
  DEL PEAK 21(13Q14.3) WILD-TYPE    129    113    104    103
D26V9, multiclass
        clus
vv       DEL PEAK 21(13Q14.3) MUTATED DEL PEAK 21(13Q14.3) WILD-TYPE
  CLUS_1                            2                            129
  CLUS_2                           12                            113
  CLUS_3                            4                            104
  CLUS_4                            1                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.3) MUTATED        1     12      6
  DEL PEAK 21(13Q14.3) WILD-TYPE    162    108    179
D26V10, multiclass
        clus
vv       DEL PEAK 21(13Q14.3) MUTATED DEL PEAK 21(13Q14.3) WILD-TYPE
  CLUS_1                            1                            162
  CLUS_2                           12                            108
  CLUS_3                            6                            179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 23(15Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q25.3) MUTATED        2      0      6
  DEL PEAK 23(15Q25.3) WILD-TYPE    130    138    223
D27V1, multiclass
        clus
vv       DEL PEAK 23(15Q25.3) MUTATED DEL PEAK 23(15Q25.3) WILD-TYPE
  CLUS_1                            2                            130
  CLUS_2                            0                            138
  CLUS_3                            6                            223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(15Q25.3) MUTATED        0      7      1      0      0
  DEL PEAK 23(15Q25.3) WILD-TYPE     46    140     83     42    180
D27V2, multiclass
        clus
vv       DEL PEAK 23(15Q25.3) MUTATED DEL PEAK 23(15Q25.3) WILD-TYPE
  CLUS_1                            0                             46
  CLUS_2                            7                            140
  CLUS_3                            1                             83
  CLUS_4                            0                             42
  CLUS_5                            0                            180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(15Q25.3) MUTATED        1      1      3      0
  DEL PEAK 23(15Q25.3) WILD-TYPE     63     63     39     49
D27V3, multiclass
        clus
vv       DEL PEAK 23(15Q25.3) MUTATED DEL PEAK 23(15Q25.3) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            1                             63
  CLUS_3                            3                             39
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(15Q25.3) MUTATED        1      0      0      3      0      1
  DEL PEAK 23(15Q25.3) WILD-TYPE     45     28     33     26     47     26
                                vv
clus                             CLUS_7
  DEL PEAK 23(15Q25.3) MUTATED        0
  DEL PEAK 23(15Q25.3) WILD-TYPE      9
D27V4, multiclass
        clus
vv       DEL PEAK 23(15Q25.3) MUTATED DEL PEAK 23(15Q25.3) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            3                             26
  CLUS_5                            0                             47
  CLUS_6                            1                             26
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(15Q25.3) MUTATED        0      8      0      0
  DEL PEAK 23(15Q25.3) WILD-TYPE    158    159     58    114
D27V5, multiclass
        clus
vv       DEL PEAK 23(15Q25.3) MUTATED DEL PEAK 23(15Q25.3) WILD-TYPE
  CLUS_1                            0                            158
  CLUS_2                            8                            159
  CLUS_3                            0                             58
  CLUS_4                            0                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(15Q25.3) MUTATED        0      8      0      0      0
  DEL PEAK 23(15Q25.3) WILD-TYPE    104    126     86     95     78
D27V6, multiclass
        clus
vv       DEL PEAK 23(15Q25.3) MUTATED DEL PEAK 23(15Q25.3) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                            8                            126
  CLUS_3                            0                             86
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(15Q25.3) MUTATED        1      3      0      4
  DEL PEAK 23(15Q25.3) WILD-TYPE    164    142    119     65
D27V7, multiclass
        clus
vv       DEL PEAK 23(15Q25.3) MUTATED DEL PEAK 23(15Q25.3) WILD-TYPE
  CLUS_1                            1                            164
  CLUS_2                            3                            142
  CLUS_3                            0                            119
  CLUS_4                            4                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q25.3) MUTATED        0      8      0
  DEL PEAK 23(15Q25.3) WILD-TYPE    178    120    192
D27V8, multiclass
        clus
vv       DEL PEAK 23(15Q25.3) MUTATED DEL PEAK 23(15Q25.3) WILD-TYPE
  CLUS_1                            0                            178
  CLUS_2                            8                            120
  CLUS_3                            0                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(15Q25.3) MUTATED        1      6      0      0
  DEL PEAK 23(15Q25.3) WILD-TYPE    130    119    108    104
D27V9, multiclass
        clus
vv       DEL PEAK 23(15Q25.3) MUTATED DEL PEAK 23(15Q25.3) WILD-TYPE
  CLUS_1                            1                            130
  CLUS_2                            6                            119
  CLUS_3                            0                            108
  CLUS_4                            0                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q25.3) MUTATED        0      7      0
  DEL PEAK 23(15Q25.3) WILD-TYPE    163    113    185
D27V10, multiclass
        clus
vv       DEL PEAK 23(15Q25.3) MUTATED DEL PEAK 23(15Q25.3) WILD-TYPE
  CLUS_1                            0                            163
  CLUS_2                            7                            113
  CLUS_3                            0                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 24(16Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q23.3) MUTATED        4      2      0
  DEL PEAK 24(16Q23.3) WILD-TYPE    128    136    229
D28V1, multiclass
        clus
vv       DEL PEAK 24(16Q23.3) MUTATED DEL PEAK 24(16Q23.3) WILD-TYPE
  CLUS_1                            4                            128
  CLUS_2                            2                            136
  CLUS_3                            0                            229
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(16Q23.3) MUTATED        1      0      2      0      3
  DEL PEAK 24(16Q23.3) WILD-TYPE     45    147     82     42    177
D28V2, multiclass
        clus
vv       DEL PEAK 24(16Q23.3) MUTATED DEL PEAK 24(16Q23.3) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            0                            147
  CLUS_3                            2                             82
  CLUS_4                            0                             42
  CLUS_5                            3                            177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(16Q23.3) MUTATED        0      2      0      3
  DEL PEAK 24(16Q23.3) WILD-TYPE     64     62     42     46
D28V3, multiclass
        clus
vv       DEL PEAK 24(16Q23.3) MUTATED DEL PEAK 24(16Q23.3) WILD-TYPE
  CLUS_1                            0                             64
  CLUS_2                            2                             62
  CLUS_3                            0                             42
  CLUS_4                            3                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(16Q23.3) MUTATED        0      0      1      0      3      1
  DEL PEAK 24(16Q23.3) WILD-TYPE     46     28     32     29     44     26
                                vv
clus                             CLUS_7
  DEL PEAK 24(16Q23.3) MUTATED        0
  DEL PEAK 24(16Q23.3) WILD-TYPE      9
D28V4, multiclass
        clus
vv       DEL PEAK 24(16Q23.3) MUTATED DEL PEAK 24(16Q23.3) WILD-TYPE
  CLUS_1                            0                             46
  CLUS_2                            0                             28
  CLUS_3                            1                             32
  CLUS_4                            0                             29
  CLUS_5                            3                             44
  CLUS_6                            1                             26
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(16Q23.3) MUTATED        2      0      2      2
  DEL PEAK 24(16Q23.3) WILD-TYPE    156    167     56    112
D28V5, multiclass
        clus
vv       DEL PEAK 24(16Q23.3) MUTATED DEL PEAK 24(16Q23.3) WILD-TYPE
  CLUS_1                            2                            156
  CLUS_2                            0                            167
  CLUS_3                            2                             56
  CLUS_4                            2                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(16Q23.3) MUTATED        3      0      0      2      1
  DEL PEAK 24(16Q23.3) WILD-TYPE    101    134     86     93     77
D28V6, multiclass
        clus
vv       DEL PEAK 24(16Q23.3) MUTATED DEL PEAK 24(16Q23.3) WILD-TYPE
  CLUS_1                            3                            101
  CLUS_2                            0                            134
  CLUS_3                            0                             86
  CLUS_4                            2                             93
  CLUS_5                            1                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(16Q23.3) MUTATED        4      0      0      2
  DEL PEAK 24(16Q23.3) WILD-TYPE    161    145    119     67
D28V7, multiclass
        clus
vv       DEL PEAK 24(16Q23.3) MUTATED DEL PEAK 24(16Q23.3) WILD-TYPE
  CLUS_1                            4                            161
  CLUS_2                            0                            145
  CLUS_3                            0                            119
  CLUS_4                            2                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q23.3) MUTATED        4      0      2
  DEL PEAK 24(16Q23.3) WILD-TYPE    174    128    190
D28V8, multiclass
        clus
vv       DEL PEAK 24(16Q23.3) MUTATED DEL PEAK 24(16Q23.3) WILD-TYPE
  CLUS_1                            4                            174
  CLUS_2                            0                            128
  CLUS_3                            2                            190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(16Q23.3) MUTATED        3      0      0      0
  DEL PEAK 24(16Q23.3) WILD-TYPE    128    125    108    104
D28V9, multiclass
        clus
vv       DEL PEAK 24(16Q23.3) MUTATED DEL PEAK 24(16Q23.3) WILD-TYPE
  CLUS_1                            3                            128
  CLUS_2                            0                            125
  CLUS_3                            0                            108
  CLUS_4                            0                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q23.3) MUTATED        3      0      0
  DEL PEAK 24(16Q23.3) WILD-TYPE    160    120    185
D28V10, multiclass
        clus
vv       DEL PEAK 24(16Q23.3) MUTATED DEL PEAK 24(16Q23.3) WILD-TYPE
  CLUS_1                            3                            160
  CLUS_2                            0                            120
  CLUS_3                            0                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 25(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(17P13.1) MUTATED        3      0      5
  DEL PEAK 25(17P13.1) WILD-TYPE    129    138    224
D29V1, multiclass
        clus
vv       DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE
  CLUS_1                            3                            129
  CLUS_2                            0                            138
  CLUS_3                            5                            224
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(17P13.1) MUTATED        1      3      1      1      2
  DEL PEAK 25(17P13.1) WILD-TYPE     45    144     83     41    178
D29V2, multiclass
        clus
vv       DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            3                            144
  CLUS_3                            1                             83
  CLUS_4                            1                             41
  CLUS_5                            2                            178
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(17P13.1) MUTATED        2      1      0      0
  DEL PEAK 25(17P13.1) WILD-TYPE     62     63     42     49
D29V3, multiclass
        clus
vv       DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE
  CLUS_1                            2                             62
  CLUS_2                            1                             63
  CLUS_3                            0                             42
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(17P13.1) MUTATED        2      0      0      0      0      1
  DEL PEAK 25(17P13.1) WILD-TYPE     44     28     33     29     47     26
                                vv
clus                             CLUS_7
  DEL PEAK 25(17P13.1) MUTATED        0
  DEL PEAK 25(17P13.1) WILD-TYPE      9
D29V4, multiclass
        clus
vv       DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE
  CLUS_1                            2                             44
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            0                             29
  CLUS_5                            0                             47
  CLUS_6                            1                             26
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(17P13.1) MUTATED        3      4      0      1
  DEL PEAK 25(17P13.1) WILD-TYPE    155    163     58    113
D29V5, multiclass
        clus
vv       DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE
  CLUS_1                            3                            155
  CLUS_2                            4                            163
  CLUS_3                            0                             58
  CLUS_4                            1                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(17P13.1) MUTATED        2      4      0      1      1
  DEL PEAK 25(17P13.1) WILD-TYPE    102    130     86     94     77
D29V6, multiclass
        clus
vv       DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE
  CLUS_1                            2                            102
  CLUS_2                            4                            130
  CLUS_3                            0                             86
  CLUS_4                            1                             94
  CLUS_5                            1                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(17P13.1) MUTATED        3      3      0      2
  DEL PEAK 25(17P13.1) WILD-TYPE    162    142    119     67
D29V7, multiclass
        clus
vv       DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE
  CLUS_1                            3                            162
  CLUS_2                            3                            142
  CLUS_3                            0                            119
  CLUS_4                            2                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(17P13.1) MUTATED        3      4      1
  DEL PEAK 25(17P13.1) WILD-TYPE    175    124    191
D29V8, multiclass
        clus
vv       DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE
  CLUS_1                            3                            175
  CLUS_2                            4                            124
  CLUS_3                            1                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(17P13.1) MUTATED        3      4      1      0
  DEL PEAK 25(17P13.1) WILD-TYPE    128    121    107    104
D29V9, multiclass
        clus
vv       DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE
  CLUS_1                            3                            128
  CLUS_2                            4                            121
  CLUS_3                            1                            107
  CLUS_4                            0                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(17P13.1) MUTATED        3      4      1
  DEL PEAK 25(17P13.1) WILD-TYPE    160    116    184
D29V10, multiclass
        clus
vv       DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE
  CLUS_1                            3                            160
  CLUS_2                            4                            116
  CLUS_3                            1                            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK 26(18Q21.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(18Q21.33) MUTATED        2      0      3
  DEL PEAK 26(18Q21.33) WILD-TYPE    130    138    226
D30V1, multiclass
        clus
vv       DEL PEAK 26(18Q21.33) MUTATED DEL PEAK 26(18Q21.33) WILD-TYPE
  CLUS_1                             2                             130
  CLUS_2                             0                             138
  CLUS_3                             3                             226
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(18Q21.33) MUTATED        0      4      0      1      0
  DEL PEAK 26(18Q21.33) WILD-TYPE     46    143     84     41    180
D30V2, multiclass
        clus
vv       DEL PEAK 26(18Q21.33) MUTATED DEL PEAK 26(18Q21.33) WILD-TYPE
  CLUS_1                             0                              46
  CLUS_2                             4                             143
  CLUS_3                             0                              84
  CLUS_4                             1                              41
  CLUS_5                             0                             180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(18Q21.33) MUTATED        2      1      1      0
  DEL PEAK 26(18Q21.33) WILD-TYPE     62     63     41     49
D30V3, multiclass
        clus
vv       DEL PEAK 26(18Q21.33) MUTATED DEL PEAK 26(18Q21.33) WILD-TYPE
  CLUS_1                             2                              62
  CLUS_2                             1                              63
  CLUS_3                             1                              41
  CLUS_4                             0                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(18Q21.33) MUTATED        2      0      0      1      0      1
  DEL PEAK 26(18Q21.33) WILD-TYPE     44     28     33     28     47     26
                                 vv
clus                              CLUS_7
  DEL PEAK 26(18Q21.33) MUTATED        0
  DEL PEAK 26(18Q21.33) WILD-TYPE      9
D30V4, multiclass
        clus
vv       DEL PEAK 26(18Q21.33) MUTATED DEL PEAK 26(18Q21.33) WILD-TYPE
  CLUS_1                             2                              44
  CLUS_2                             0                              28
  CLUS_3                             0                              33
  CLUS_4                             1                              28
  CLUS_5                             0                              47
  CLUS_6                             1                              26
  CLUS_7                             0                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(18Q21.33) MUTATED        0      4      0      1
  DEL PEAK 26(18Q21.33) WILD-TYPE    158    163     58    113
D30V5, multiclass
        clus
vv       DEL PEAK 26(18Q21.33) MUTATED DEL PEAK 26(18Q21.33) WILD-TYPE
  CLUS_1                             0                             158
  CLUS_2                             4                             163
  CLUS_3                             0                              58
  CLUS_4                             1                             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(18Q21.33) MUTATED        0      4      0      1      0
  DEL PEAK 26(18Q21.33) WILD-TYPE    104    130     86     94     78
D30V6, multiclass
        clus
vv       DEL PEAK 26(18Q21.33) MUTATED DEL PEAK 26(18Q21.33) WILD-TYPE
  CLUS_1                             0                             104
  CLUS_2                             4                             130
  CLUS_3                             0                              86
  CLUS_4                             1                              94
  CLUS_5                             0                              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(18Q21.33) MUTATED        0      2      1      2
  DEL PEAK 26(18Q21.33) WILD-TYPE    165    143    118     67
D30V7, multiclass
        clus
vv       DEL PEAK 26(18Q21.33) MUTATED DEL PEAK 26(18Q21.33) WILD-TYPE
  CLUS_1                             0                             165
  CLUS_2                             2                             143
  CLUS_3                             1                             118
  CLUS_4                             2                              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(18Q21.33) MUTATED        0      4      1
  DEL PEAK 26(18Q21.33) WILD-TYPE    178    124    191
D30V8, multiclass
        clus
vv       DEL PEAK 26(18Q21.33) MUTATED DEL PEAK 26(18Q21.33) WILD-TYPE
  CLUS_1                             0                             178
  CLUS_2                             4                             124
  CLUS_3                             1                             191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(18Q21.33) MUTATED        0      3      0      1
  DEL PEAK 26(18Q21.33) WILD-TYPE    131    122    108    103
D30V9, multiclass
        clus
vv       DEL PEAK 26(18Q21.33) MUTATED DEL PEAK 26(18Q21.33) WILD-TYPE
  CLUS_1                             0                             131
  CLUS_2                             3                             122
  CLUS_3                             0                             108
  CLUS_4                             1                             103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(18Q21.33) MUTATED        0      3      1
  DEL PEAK 26(18Q21.33) WILD-TYPE    163    117    184
D30V10, multiclass
        clus
vv       DEL PEAK 26(18Q21.33) MUTATED DEL PEAK 26(18Q21.33) WILD-TYPE
  CLUS_1                             0                             163
  CLUS_2                             3                             117
  CLUS_3                             1                             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 27(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(19P13.2) MUTATED        2      1      4
  DEL PEAK 27(19P13.2) WILD-TYPE    130    137    225
D31V1, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            2                            130
  CLUS_2                            1                            137
  CLUS_3                            4                            225
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(19P13.2) MUTATED        0      7      0      0      0
  DEL PEAK 27(19P13.2) WILD-TYPE     46    140     84     42    180
D31V2, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            0                             46
  CLUS_2                            7                            140
  CLUS_3                            0                             84
  CLUS_4                            0                             42
  CLUS_5                            0                            180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19P13.2) MUTATED        2      1      2      0
  DEL PEAK 27(19P13.2) WILD-TYPE     62     63     40     49
D31V3, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            2                             62
  CLUS_2                            1                             63
  CLUS_3                            2                             40
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(19P13.2) MUTATED        3      0      0      1      0      1
  DEL PEAK 27(19P13.2) WILD-TYPE     43     28     33     28     47     26
                                vv
clus                             CLUS_7
  DEL PEAK 27(19P13.2) MUTATED        0
  DEL PEAK 27(19P13.2) WILD-TYPE      9
D31V4, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            3                             43
  CLUS_2                            0                             28
  CLUS_3                            0                             33
  CLUS_4                            1                             28
  CLUS_5                            0                             47
  CLUS_6                            1                             26
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19P13.2) MUTATED        0      7      0      0
  DEL PEAK 27(19P13.2) WILD-TYPE    158    160     58    114
D31V5, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            0                            158
  CLUS_2                            7                            160
  CLUS_3                            0                             58
  CLUS_4                            0                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(19P13.2) MUTATED        0      7      0      0      0
  DEL PEAK 27(19P13.2) WILD-TYPE    104    127     86     95     78
D31V6, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            0                            104
  CLUS_2                            7                            127
  CLUS_3                            0                             86
  CLUS_4                            0                             95
  CLUS_5                            0                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19P13.2) MUTATED        0      6      0      1
  DEL PEAK 27(19P13.2) WILD-TYPE    165    139    119     68
D31V7, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            0                            165
  CLUS_2                            6                            139
  CLUS_3                            0                            119
  CLUS_4                            1                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(19P13.2) MUTATED        0      7      0
  DEL PEAK 27(19P13.2) WILD-TYPE    178    121    192
D31V8, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            0                            178
  CLUS_2                            7                            121
  CLUS_3                            0                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19P13.2) MUTATED        0      7      0      0
  DEL PEAK 27(19P13.2) WILD-TYPE    131    118    108    104
D31V9, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            0                            131
  CLUS_2                            7                            118
  CLUS_3                            0                            108
  CLUS_4                            0                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(19P13.2) MUTATED        0      7      0
  DEL PEAK 27(19P13.2) WILD-TYPE    163    113    185
D31V10, multiclass
        clus
vv       DEL PEAK 27(19P13.2) MUTATED DEL PEAK 27(19P13.2) WILD-TYPE
  CLUS_1                            0                            163
  CLUS_2                            7                            113
  CLUS_3                            0                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 28(19P13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(19P13.12) MUTATED        3      2      3
  DEL PEAK 28(19P13.12) WILD-TYPE    129    136    226
D32V1, multiclass
        clus
vv       DEL PEAK 28(19P13.12) MUTATED DEL PEAK 28(19P13.12) WILD-TYPE
  CLUS_1                             3                             129
  CLUS_2                             2                             136
  CLUS_3                             3                             226
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(19P13.12) MUTATED        0      7      0      0      1
  DEL PEAK 28(19P13.12) WILD-TYPE     46    140     84     42    179
D32V2, multiclass
        clus
vv       DEL PEAK 28(19P13.12) MUTATED DEL PEAK 28(19P13.12) WILD-TYPE
  CLUS_1                             0                              46
  CLUS_2                             7                             140
  CLUS_3                             0                              84
  CLUS_4                             0                              42
  CLUS_5                             1                             179
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(19P13.12) MUTATED        3      0      2      0
  DEL PEAK 28(19P13.12) WILD-TYPE     61     64     40     49
D32V3, multiclass
        clus
vv       DEL PEAK 28(19P13.12) MUTATED DEL PEAK 28(19P13.12) WILD-TYPE
  CLUS_1                             3                              61
  CLUS_2                             0                              64
  CLUS_3                             2                              40
  CLUS_4                             0                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(19P13.12) MUTATED        4      0      0      1      0      0
  DEL PEAK 28(19P13.12) WILD-TYPE     42     28     33     28     47     27
                                 vv
clus                              CLUS_7
  DEL PEAK 28(19P13.12) MUTATED        0
  DEL PEAK 28(19P13.12) WILD-TYPE      9
D32V4, multiclass
        clus
vv       DEL PEAK 28(19P13.12) MUTATED DEL PEAK 28(19P13.12) WILD-TYPE
  CLUS_1                             4                              42
  CLUS_2                             0                              28
  CLUS_3                             0                              33
  CLUS_4                             1                              28
  CLUS_5                             0                              47
  CLUS_6                             0                              27
  CLUS_7                             0                               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(19P13.12) MUTATED        1      7      0      0
  DEL PEAK 28(19P13.12) WILD-TYPE    157    160     58    114
D32V5, multiclass
        clus
vv       DEL PEAK 28(19P13.12) MUTATED DEL PEAK 28(19P13.12) WILD-TYPE
  CLUS_1                             1                             157
  CLUS_2                             7                             160
  CLUS_3                             0                              58
  CLUS_4                             0                             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(19P13.12) MUTATED        1      7      0      0      0
  DEL PEAK 28(19P13.12) WILD-TYPE    103    127     86     95     78
D32V6, multiclass
        clus
vv       DEL PEAK 28(19P13.12) MUTATED DEL PEAK 28(19P13.12) WILD-TYPE
  CLUS_1                             1                             103
  CLUS_2                             7                             127
  CLUS_3                             0                              86
  CLUS_4                             0                              95
  CLUS_5                             0                              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(19P13.12) MUTATED        0      6      1      1
  DEL PEAK 28(19P13.12) WILD-TYPE    165    139    118     68
D32V7, multiclass
        clus
vv       DEL PEAK 28(19P13.12) MUTATED DEL PEAK 28(19P13.12) WILD-TYPE
  CLUS_1                             0                             165
  CLUS_2                             6                             139
  CLUS_3                             1                             118
  CLUS_4                             1                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(19P13.12) MUTATED        0      7      1
  DEL PEAK 28(19P13.12) WILD-TYPE    178    121    191
D32V8, multiclass
        clus
vv       DEL PEAK 28(19P13.12) MUTATED DEL PEAK 28(19P13.12) WILD-TYPE
  CLUS_1                             0                             178
  CLUS_2                             7                             121
  CLUS_3                             1                             191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(19P13.12) MUTATED        0      7      0      1
  DEL PEAK 28(19P13.12) WILD-TYPE    131    118    108    103
D32V9, multiclass
        clus
vv       DEL PEAK 28(19P13.12) MUTATED DEL PEAK 28(19P13.12) WILD-TYPE
  CLUS_1                             0                             131
  CLUS_2                             7                             118
  CLUS_3                             0                             108
  CLUS_4                             1                             103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(19P13.12) MUTATED        0      7      1
  DEL PEAK 28(19P13.12) WILD-TYPE    163    113    184
D32V10, multiclass
        clus
vv       DEL PEAK 28(19P13.12) MUTATED DEL PEAK 28(19P13.12) WILD-TYPE
  CLUS_1                             0                             163
  CLUS_2                             7                             113
  CLUS_3                             1                             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 30(21Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(21Q21.1) MUTATED        2      1      6
  DEL PEAK 30(21Q21.1) WILD-TYPE    130    137    223
D33V1, multiclass
        clus
vv       DEL PEAK 30(21Q21.1) MUTATED DEL PEAK 30(21Q21.1) WILD-TYPE
  CLUS_1                            2                            130
  CLUS_2                            1                            137
  CLUS_3                            6                            223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(21Q21.1) MUTATED        0      4      2      0      3
  DEL PEAK 30(21Q21.1) WILD-TYPE     46    143     82     42    177
D33V2, multiclass
        clus
vv       DEL PEAK 30(21Q21.1) MUTATED DEL PEAK 30(21Q21.1) WILD-TYPE
  CLUS_1                            0                             46
  CLUS_2                            4                            143
  CLUS_3                            2                             82
  CLUS_4                            0                             42
  CLUS_5                            3                            177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(21Q21.1) MUTATED        1      3      0      0
  DEL PEAK 30(21Q21.1) WILD-TYPE     63     61     42     49
D33V3, multiclass
        clus
vv       DEL PEAK 30(21Q21.1) MUTATED DEL PEAK 30(21Q21.1) WILD-TYPE
  CLUS_1                            1                             63
  CLUS_2                            3                             61
  CLUS_3                            0                             42
  CLUS_4                            0                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(21Q21.1) MUTATED        1      0      1      0      0      2
  DEL PEAK 30(21Q21.1) WILD-TYPE     45     28     32     29     47     25
                                vv
clus                             CLUS_7
  DEL PEAK 30(21Q21.1) MUTATED        0
  DEL PEAK 30(21Q21.1) WILD-TYPE      9
D33V4, multiclass
        clus
vv       DEL PEAK 30(21Q21.1) MUTATED DEL PEAK 30(21Q21.1) WILD-TYPE
  CLUS_1                            1                             45
  CLUS_2                            0                             28
  CLUS_3                            1                             32
  CLUS_4                            0                             29
  CLUS_5                            0                             47
  CLUS_6                            2                             25
  CLUS_7                            0                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(21Q21.1) MUTATED        2      4      2      1
  DEL PEAK 30(21Q21.1) WILD-TYPE    156    163     56    113
D33V5, multiclass
        clus
vv       DEL PEAK 30(21Q21.1) MUTATED DEL PEAK 30(21Q21.1) WILD-TYPE
  CLUS_1                            2                            156
  CLUS_2                            4                            163
  CLUS_3                            2                             56
  CLUS_4                            1                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(21Q21.1) MUTATED        1      4      2      1      1
  DEL PEAK 30(21Q21.1) WILD-TYPE    103    130     84     94     77
D33V6, multiclass
        clus
vv       DEL PEAK 30(21Q21.1) MUTATED DEL PEAK 30(21Q21.1) WILD-TYPE
  CLUS_1                            1                            103
  CLUS_2                            4                            130
  CLUS_3                            2                             84
  CLUS_4                            1                             94
  CLUS_5                            1                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(21Q21.1) MUTATED        6      1      0      2
  DEL PEAK 30(21Q21.1) WILD-TYPE    159    144    119     67
D33V7, multiclass
        clus
vv       DEL PEAK 30(21Q21.1) MUTATED DEL PEAK 30(21Q21.1) WILD-TYPE
  CLUS_1                            6                            159
  CLUS_2                            1                            144
  CLUS_3                            0                            119
  CLUS_4                            2                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(21Q21.1) MUTATED        5      4      0
  DEL PEAK 30(21Q21.1) WILD-TYPE    173    124    192
D33V8, multiclass
        clus
vv       DEL PEAK 30(21Q21.1) MUTATED DEL PEAK 30(21Q21.1) WILD-TYPE
  CLUS_1                            5                            173
  CLUS_2                            4                            124
  CLUS_3                            0                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(21Q21.1) MUTATED        5      2      0      1
  DEL PEAK 30(21Q21.1) WILD-TYPE    126    123    108    103
D33V9, multiclass
        clus
vv       DEL PEAK 30(21Q21.1) MUTATED DEL PEAK 30(21Q21.1) WILD-TYPE
  CLUS_1                            5                            126
  CLUS_2                            2                            123
  CLUS_3                            0                            108
  CLUS_4                            1                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(21Q21.1) MUTATED        5      3      0
  DEL PEAK 30(21Q21.1) WILD-TYPE    158    117    185
D33V10, multiclass
        clus
vv       DEL PEAK 30(21Q21.1) MUTATED DEL PEAK 30(21Q21.1) WILD-TYPE
  CLUS_1                            5                            158
  CLUS_2                            3                            117
  CLUS_3                            0                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 31(22Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(22Q13.1) MUTATED       75      0     14
  DEL PEAK 31(22Q13.1) WILD-TYPE     57    138    215
D34V1, multiclass
        clus
vv       DEL PEAK 31(22Q13.1) MUTATED DEL PEAK 31(22Q13.1) WILD-TYPE
  CLUS_1                           75                             57
  CLUS_2                            0                            138
  CLUS_3                           14                            215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(22Q13.1) MUTATED        3     46      9      2     29
  DEL PEAK 31(22Q13.1) WILD-TYPE     43    101     75     40    151
D34V2, multiclass
        clus
vv       DEL PEAK 31(22Q13.1) MUTATED DEL PEAK 31(22Q13.1) WILD-TYPE
  CLUS_1                            3                             43
  CLUS_2                           46                            101
  CLUS_3                            9                             75
  CLUS_4                            2                             40
  CLUS_5                           29                            151
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(22Q13.1) MUTATED       15      9      5      9
  DEL PEAK 31(22Q13.1) WILD-TYPE     49     55     37     40
D34V3, multiclass
        clus
vv       DEL PEAK 31(22Q13.1) MUTATED DEL PEAK 31(22Q13.1) WILD-TYPE
  CLUS_1                           15                             49
  CLUS_2                            9                             55
  CLUS_3                            5                             37
  CLUS_4                            9                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(22Q13.1) MUTATED       11      5      2      5      8      6
  DEL PEAK 31(22Q13.1) WILD-TYPE     35     23     31     24     39     21
                                vv
clus                             CLUS_7
  DEL PEAK 31(22Q13.1) MUTATED        1
  DEL PEAK 31(22Q13.1) WILD-TYPE      8
D34V4, multiclass
        clus
vv       DEL PEAK 31(22Q13.1) MUTATED DEL PEAK 31(22Q13.1) WILD-TYPE
  CLUS_1                           11                             35
  CLUS_2                            5                             23
  CLUS_3                            2                             31
  CLUS_4                            5                             24
  CLUS_5                            8                             39
  CLUS_6                            6                             21
  CLUS_7                            1                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(22Q13.1) MUTATED        8     47      8     26
  DEL PEAK 31(22Q13.1) WILD-TYPE    150    120     50     88
D34V5, multiclass
        clus
vv       DEL PEAK 31(22Q13.1) MUTATED DEL PEAK 31(22Q13.1) WILD-TYPE
  CLUS_1                            8                            150
  CLUS_2                           47                            120
  CLUS_3                            8                             50
  CLUS_4                           26                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(22Q13.1) MUTATED        9     42     13     23      2
  DEL PEAK 31(22Q13.1) WILD-TYPE     95     92     73     72     76
D34V6, multiclass
        clus
vv       DEL PEAK 31(22Q13.1) MUTATED DEL PEAK 31(22Q13.1) WILD-TYPE
  CLUS_1                            9                             95
  CLUS_2                           42                             92
  CLUS_3                           13                             73
  CLUS_4                           23                             72
  CLUS_5                            2                             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(22Q13.1) MUTATED       21     40     19      9
  DEL PEAK 31(22Q13.1) WILD-TYPE    144    105    100     60
D34V7, multiclass
        clus
vv       DEL PEAK 31(22Q13.1) MUTATED DEL PEAK 31(22Q13.1) WILD-TYPE
  CLUS_1                           21                            144
  CLUS_2                           40                            105
  CLUS_3                           19                            100
  CLUS_4                            9                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(22Q13.1) MUTATED       21     40     28
  DEL PEAK 31(22Q13.1) WILD-TYPE    157     88    164
D34V8, multiclass
        clus
vv       DEL PEAK 31(22Q13.1) MUTATED DEL PEAK 31(22Q13.1) WILD-TYPE
  CLUS_1                           21                            157
  CLUS_2                           40                             88
  CLUS_3                           28                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(22Q13.1) MUTATED       17     39      8     17
  DEL PEAK 31(22Q13.1) WILD-TYPE    114     86    100     87
D34V9, multiclass
        clus
vv       DEL PEAK 31(22Q13.1) MUTATED DEL PEAK 31(22Q13.1) WILD-TYPE
  CLUS_1                           17                            114
  CLUS_2                           39                             86
  CLUS_3                            8                            100
  CLUS_4                           17                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(22Q13.1) MUTATED       21     38     22
  DEL PEAK 31(22Q13.1) WILD-TYPE    142     82    163
D34V10, multiclass
        clus
vv       DEL PEAK 31(22Q13.1) MUTATED DEL PEAK 31(22Q13.1) WILD-TYPE
  CLUS_1                           21                            142
  CLUS_2                           38                             82
  CLUS_3                           22                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 32(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED       75      0     15
  DEL PEAK 32(22Q13.32) WILD-TYPE     57    138    214
D35V1, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            75                              57
  CLUS_2                             0                             138
  CLUS_3                            15                             214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(22Q13.32) MUTATED        3     47      9      2     29
  DEL PEAK 32(22Q13.32) WILD-TYPE     43    100     75     40    151
D35V2, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                             3                              43
  CLUS_2                            47                             100
  CLUS_3                             9                              75
  CLUS_4                             2                              40
  CLUS_5                            29                             151
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(22Q13.32) MUTATED       15      9      5      9
  DEL PEAK 32(22Q13.32) WILD-TYPE     49     55     37     40
D35V3, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            15                              49
  CLUS_2                             9                              55
  CLUS_3                             5                              37
  CLUS_4                             9                              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(22Q13.32) MUTATED       11      5      2      5      8      6
  DEL PEAK 32(22Q13.32) WILD-TYPE     35     23     31     24     39     21
                                 vv
clus                              CLUS_7
  DEL PEAK 32(22Q13.32) MUTATED        1
  DEL PEAK 32(22Q13.32) WILD-TYPE      8
D35V4, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            11                              35
  CLUS_2                             5                              23
  CLUS_3                             2                              31
  CLUS_4                             5                              24
  CLUS_5                             8                              39
  CLUS_6                             6                              21
  CLUS_7                             1                               8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(22Q13.32) MUTATED        8     48      8     26
  DEL PEAK 32(22Q13.32) WILD-TYPE    150    119     50     88
D35V5, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                             8                             150
  CLUS_2                            48                             119
  CLUS_3                             8                              50
  CLUS_4                            26                              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(22Q13.32) MUTATED        9     43     13     23      2
  DEL PEAK 32(22Q13.32) WILD-TYPE     95     91     73     72     76
D35V6, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                             9                              95
  CLUS_2                            43                              91
  CLUS_3                            13                              73
  CLUS_4                            23                              72
  CLUS_5                             2                              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(22Q13.32) MUTATED       21     41     19      9
  DEL PEAK 32(22Q13.32) WILD-TYPE    144    104    100     60
D35V7, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            21                             144
  CLUS_2                            41                             104
  CLUS_3                            19                             100
  CLUS_4                             9                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED       21     41     28
  DEL PEAK 32(22Q13.32) WILD-TYPE    157     87    164
D35V8, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            21                             157
  CLUS_2                            41                              87
  CLUS_3                            28                             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(22Q13.32) MUTATED       17     40      8     17
  DEL PEAK 32(22Q13.32) WILD-TYPE    114     85    100     87
D35V9, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            17                             114
  CLUS_2                            40                              85
  CLUS_3                             8                             100
  CLUS_4                            17                              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED       21     39     22
  DEL PEAK 32(22Q13.32) WILD-TYPE    142     81    163
D35V10, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            21                             142
  CLUS_2                            39                              81
  CLUS_3                            22                             163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 33(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XQ28) MUTATED        0      0      4
  DEL PEAK 33(XQ28) WILD-TYPE    132    138    225
D36V1, multiclass
        clus
vv       DEL PEAK 33(XQ28) MUTATED DEL PEAK 33(XQ28) WILD-TYPE
  CLUS_1                         0                         132
  CLUS_2                         0                         138
  CLUS_3                         4                         225
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(XQ28) MUTATED        0      3      1      0      0
  DEL PEAK 33(XQ28) WILD-TYPE     46    144     83     42    180
D36V2, multiclass
        clus
vv       DEL PEAK 33(XQ28) MUTATED DEL PEAK 33(XQ28) WILD-TYPE
  CLUS_1                         0                          46
  CLUS_2                         3                         144
  CLUS_3                         1                          83
  CLUS_4                         0                          42
  CLUS_5                         0                         180
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XQ28) MUTATED        3      0      0      0
  DEL PEAK 33(XQ28) WILD-TYPE     61     64     42     49
D36V3, multiclass
        clus
vv       DEL PEAK 33(XQ28) MUTATED DEL PEAK 33(XQ28) WILD-TYPE
  CLUS_1                         3                          61
  CLUS_2                         0                          64
  CLUS_3                         0                          42
  CLUS_4                         0                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 33(XQ28) MUTATED        3      0      0      0      0      0      0
  DEL PEAK 33(XQ28) WILD-TYPE     43     28     33     29     47     27      9
D36V4, multiclass
        clus
vv       DEL PEAK 33(XQ28) MUTATED DEL PEAK 33(XQ28) WILD-TYPE
  CLUS_1                         3                          43
  CLUS_2                         0                          28
  CLUS_3                         0                          33
  CLUS_4                         0                          29
  CLUS_5                         0                          47
  CLUS_6                         0                          27
  CLUS_7                         0                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XQ28) MUTATED        0      3      1      0
  DEL PEAK 33(XQ28) WILD-TYPE    158    164     57    114
D36V5, multiclass
        clus
vv       DEL PEAK 33(XQ28) MUTATED DEL PEAK 33(XQ28) WILD-TYPE
  CLUS_1                         0                         158
  CLUS_2                         3                         164
  CLUS_3                         1                          57
  CLUS_4                         0                         114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(XQ28) MUTATED        0      3      1      0      0
  DEL PEAK 33(XQ28) WILD-TYPE    104    131     85     95     78
D36V6, multiclass
        clus
vv       DEL PEAK 33(XQ28) MUTATED DEL PEAK 33(XQ28) WILD-TYPE
  CLUS_1                         0                         104
  CLUS_2                         3                         131
  CLUS_3                         1                          85
  CLUS_4                         0                          95
  CLUS_5                         0                          78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XQ28) MUTATED        0      3      1      0
  DEL PEAK 33(XQ28) WILD-TYPE    165    142    118     69
D36V7, multiclass
        clus
vv       DEL PEAK 33(XQ28) MUTATED DEL PEAK 33(XQ28) WILD-TYPE
  CLUS_1                         0                         165
  CLUS_2                         3                         142
  CLUS_3                         1                         118
  CLUS_4                         0                          69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XQ28) MUTATED        0      3      1
  DEL PEAK 33(XQ28) WILD-TYPE    178    125    191
D36V8, multiclass
        clus
vv       DEL PEAK 33(XQ28) MUTATED DEL PEAK 33(XQ28) WILD-TYPE
  CLUS_1                         0                         178
  CLUS_2                         3                         125
  CLUS_3                         1                         191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XQ28) MUTATED        0      3      1      0
  DEL PEAK 33(XQ28) WILD-TYPE    131    122    107    104
D36V9, multiclass
        clus
vv       DEL PEAK 33(XQ28) MUTATED DEL PEAK 33(XQ28) WILD-TYPE
  CLUS_1                         0                         131
  CLUS_2                         3                         122
  CLUS_3                         1                         107
  CLUS_4                         0                         104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XQ28) MUTATED        0      3      1
  DEL PEAK 33(XQ28) WILD-TYPE    163    117    184
D36V10, multiclass
        clus
vv       DEL PEAK 33(XQ28) MUTATED DEL PEAK 33(XQ28) WILD-TYPE
  CLUS_1                         0                         163
  CLUS_2                         3                         117
  CLUS_3                         1                         184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
