[1] "ofn"       "-oTUVM-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UVM-TP/22542449/UVM-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UVM-TP/22534464/transformed.cor.cli.txt"

nPatients in clinical file=80, in cluster file=80, common to both=80
[1] "Reduce the number of clustering variables from 21 to 20."
[1] 20 80
[1] "AMP PEAK 1(6P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE 
                          45                           35 
  AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE 
                          45                           35 
[1] "AMP PEAK 2(8Q24.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE 
                           61                            19 
  AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE 
                           61                            19 
[1] "AMP PEAK 3(17Q25.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE 
                           14                            66 
  AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE 
                           14                            66 
[1] "DEL PEAK  1(1P36.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.12) MUTATED DEL PEAK  1(1P36.12) WILD-TYPE 
                            25                             55 
  DEL PEAK  1(1P36.12) MUTATED DEL PEAK  1(1P36.12) WILD-TYPE 
                            25                             55 
[1] "DEL PEAK  2(1P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE 
                         18                          62 
  DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE 
                         18                          62 
[1] "DEL PEAK  3(2Q37.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q37.2) MUTATED DEL PEAK  3(2Q37.2) WILD-TYPE 
                            3                            77 
  DEL PEAK  3(2Q37.2) MUTATED DEL PEAK  3(2Q37.2) WILD-TYPE 
                            3                            77 
[1] "DEL PEAK  4(3P25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P25.2) MUTATED DEL PEAK  4(3P25.2) WILD-TYPE 
                           43                            37 
  DEL PEAK  4(3P25.2) MUTATED DEL PEAK  4(3P25.2) WILD-TYPE 
                           43                            37 
[1] "DEL PEAK  5(3P25.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P25.1) MUTATED DEL PEAK  5(3P25.1) WILD-TYPE 
                           43                            37 
  DEL PEAK  5(3P25.1) MUTATED DEL PEAK  5(3P25.1) WILD-TYPE 
                           43                            37 
[1] "DEL PEAK  6(3P22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE 
                           43                            37 
  DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE 
                           43                            37 
[1] "DEL PEAK  7(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                           44                            36 
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                           44                            36 
[1] "DEL PEAK  8(3Q24) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3Q24) MUTATED DEL PEAK  8(3Q24) WILD-TYPE 
                         44                          36 
  DEL PEAK  8(3Q24) MUTATED DEL PEAK  8(3Q24) WILD-TYPE 
                         44                          36 
[1] "DEL PEAK  9(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE 
                         44                          36 
  DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE 
                         44                          36 
[1] "DEL PEAK 10(6Q25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q25.2) MUTATED DEL PEAK 10(6Q25.2) WILD-TYPE 
                           23                            57 
  DEL PEAK 10(6Q25.2) MUTATED DEL PEAK 10(6Q25.2) WILD-TYPE 
                           23                            57 
[1] "DEL PEAK 11(6Q27) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                         24                          56 
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                         24                          56 
[1] "DEL PEAK 12(8P11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE 
                            19                             61 
  DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE 
                            19                             61 
[1] "DEL PEAK 14(11Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(11Q24.3) MUTATED DEL PEAK 14(11Q24.3) WILD-TYPE 
                             7                             73 
  DEL PEAK 14(11Q24.3) MUTATED DEL PEAK 14(11Q24.3) WILD-TYPE 
                             7                             73 
[1] "DEL PEAK 15(16Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(16Q12.1) MUTATED DEL PEAK 15(16Q12.1) WILD-TYPE 
                            16                             64 
  DEL PEAK 15(16Q12.1) MUTATED DEL PEAK 15(16Q12.1) WILD-TYPE 
                            16                             64 
[1] "DEL PEAK 16(16Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(16Q23.3) MUTATED DEL PEAK 16(16Q23.3) WILD-TYPE 
                            17                             63 
  DEL PEAK 16(16Q23.3) MUTATED DEL PEAK 16(16Q23.3) WILD-TYPE 
                            17                             63 
[1] "DEL PEAK 17(16Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(16Q24.3) MUTATED DEL PEAK 17(16Q24.3) WILD-TYPE 
                            17                             63 
  DEL PEAK 17(16Q24.3) MUTATED DEL PEAK 17(16Q24.3) WILD-TYPE 
                            17                             63 
[1] "DEL PEAK 18(17Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(17Q12) MUTATED DEL PEAK 18(17Q12) WILD-TYPE 
                           3                           77 
  DEL PEAK 18(17Q12) MUTATED DEL PEAK 18(17Q12) WILD-TYPE 
                           3                           77 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 80 columns.

Variable 1:'CN_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 80 columns, 0 survival variables, and 8 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=6, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(6P24.3) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 1(6P24.3) MUTATED        7      4      4     27      3      0
  AMP PEAK 1(6P24.3) WILD-TYPE     15      3      6      4      3      4
D1V1, multiclass
        clus
vv       AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE
  CLUS_1                          7                           15
  CLUS_2                          4                            3
  CLUS_3                          4                            6
  CLUS_4                         27                            4
  CLUS_5                          3                            3
  CLUS_6                          0                            4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(6P24.3) MUTATED        9      9      5     22
  AMP PEAK 1(6P24.3) WILD-TYPE     19      5      9      2
D1V2, multiclass
        clus
vv       AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE
  CLUS_1                          9                           19
  CLUS_2                          9                            5
  CLUS_3                          5                            9
  CLUS_4                         22                            2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(6P24.3) MUTATED        4      6     29      6
  AMP PEAK 1(6P24.3) WILD-TYPE     14      9      3      9
D1V3, multiclass
        clus
vv       AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE
  CLUS_1                          4                           14
  CLUS_2                          6                            9
  CLUS_3                         29                            3
  CLUS_4                          6                            9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(6P24.3) MUTATED        9     30      6
  AMP PEAK 1(6P24.3) WILD-TYPE     20      3     12
D1V4, multiclass
        clus
vv       AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE
  CLUS_1                          9                           20
  CLUS_2                         30                            3
  CLUS_3                          6                           12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 1(6P24.3) MUTATED        1      4      8     24      7      1
  AMP PEAK 1(6P24.3) WILD-TYPE      7      4      3      1     16      4
D1V5, multiclass
        clus
vv       AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE
  CLUS_1                          1                            7
  CLUS_2                          4                            4
  CLUS_3                          8                            3
  CLUS_4                         24                            1
  CLUS_5                          7                           16
  CLUS_6                          1                            4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(6P24.3) MUTATED        4      9     27      5
  AMP PEAK 1(6P24.3) WILD-TYPE     13      4      1     17
D1V6, multiclass
        clus
vv       AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE
  CLUS_1                          4                           13
  CLUS_2                          9                            4
  CLUS_3                         27                            1
  CLUS_4                          5                           17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 1(6P24.3) MUTATED        8      2     17      3      4      4      3
  AMP PEAK 1(6P24.3) WILD-TYPE     12      5      0      6      4      3      3
D1V7, multiclass
        clus
vv       AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE
  CLUS_1                          8                           12
  CLUS_2                          2                            5
  CLUS_3                         17                            0
  CLUS_4                          3                            6
  CLUS_5                          4                            4
  CLUS_6                          4                            3
  CLUS_7                          3                            3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(6P24.3) MUTATED        7     25      1      8
  AMP PEAK 1(6P24.3) WILD-TYPE     11      3     15      4
D1V8, multiclass
        clus
vv       AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE
  CLUS_1                          7                           11
  CLUS_2                         25                            3
  CLUS_3                          1                           15
  CLUS_4                          8                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK 2(8Q24.22) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 2(8Q24.22) MUTATED       18      7     10     16      6      4
  AMP PEAK 2(8Q24.22) WILD-TYPE      4      0      0     15      0      0
D2V1, multiclass
        clus
vv       AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE
  CLUS_1                          18                             4
  CLUS_2                           7                             0
  CLUS_3                          10                             0
  CLUS_4                          16                            15
  CLUS_5                           6                             0
  CLUS_6                           4                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(8Q24.22) MUTATED       28      5     11     17
  AMP PEAK 2(8Q24.22) WILD-TYPE      0      9      3      7
D2V2, multiclass
        clus
vv       AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE
  CLUS_1                          28                             0
  CLUS_2                           5                             9
  CLUS_3                          11                             3
  CLUS_4                          17                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(8Q24.22) MUTATED       16     12     19     14
  AMP PEAK 2(8Q24.22) WILD-TYPE      2      3     13      1
D2V3, multiclass
        clus
vv       AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE
  CLUS_1                          16                             2
  CLUS_2                          12                             3
  CLUS_3                          19                            13
  CLUS_4                          14                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(8Q24.22) MUTATED       28     19     14
  AMP PEAK 2(8Q24.22) WILD-TYPE      1     14      4
D2V4, multiclass
        clus
vv       AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE
  CLUS_1                          28                             1
  CLUS_2                          19                            14
  CLUS_3                          14                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 2(8Q24.22) MUTATED        7      8      5     16     23      2
  AMP PEAK 2(8Q24.22) WILD-TYPE      1      0      6      9      0      3
D2V5, multiclass
        clus
vv       AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE
  CLUS_1                           7                             1
  CLUS_2                           8                             0
  CLUS_3                           5                             6
  CLUS_4                          16                             9
  CLUS_5                          23                             0
  CLUS_6                           2                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(8Q24.22) MUTATED       16      6     18     21
  AMP PEAK 2(8Q24.22) WILD-TYPE      1      7     10      1
D2V6, multiclass
        clus
vv       AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE
  CLUS_1                          16                             1
  CLUS_2                           6                             7
  CLUS_3                          18                            10
  CLUS_4                          21                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 2(8Q24.22) MUTATED       20      6     11      6      5      5
  AMP PEAK 2(8Q24.22) WILD-TYPE      0      1      6      3      3      2
                               vv
clus                            CLUS_7
  AMP PEAK 2(8Q24.22) MUTATED        5
  AMP PEAK 2(8Q24.22) WILD-TYPE      1
D2V7, multiclass
        clus
vv       AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE
  CLUS_1                          20                             0
  CLUS_2                           6                             1
  CLUS_3                          11                             6
  CLUS_4                           6                             3
  CLUS_5                           5                             3
  CLUS_6                           5                             2
  CLUS_7                           5                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(8Q24.22) MUTATED       18     16     15      9
  AMP PEAK 2(8Q24.22) WILD-TYPE      0     12      1      3
D2V8, multiclass
        clus
vv       AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE
  CLUS_1                          18                             0
  CLUS_2                          16                            12
  CLUS_3                          15                             1
  CLUS_4                           9                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK 3(17Q25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(17Q25.3) MUTATED        1      0      6      7      0      0
  AMP PEAK 3(17Q25.3) WILD-TYPE     21      7      4     24      6      4
D3V1, multiclass
        clus
vv       AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE
  CLUS_1                           1                            21
  CLUS_2                           0                             7
  CLUS_3                           6                             4
  CLUS_4                           7                            24
  CLUS_5                           0                             6
  CLUS_6                           0                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(17Q25.3) MUTATED        2      0      2     10
  AMP PEAK 3(17Q25.3) WILD-TYPE     26     14     12     14
D3V2, multiclass
        clus
vv       AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE
  CLUS_1                           2                            26
  CLUS_2                           0                            14
  CLUS_3                           2                            12
  CLUS_4                          10                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(17Q25.3) MUTATED        1      4      6      3
  AMP PEAK 3(17Q25.3) WILD-TYPE     17     11     26     12
D3V3, multiclass
        clus
vv       AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE
  CLUS_1                           1                            17
  CLUS_2                           4                            11
  CLUS_3                           6                            26
  CLUS_4                           3                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(17Q25.3) MUTATED        2      7      5
  AMP PEAK 3(17Q25.3) WILD-TYPE     27     26     13
D3V4, multiclass
        clus
vv       AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE
  CLUS_1                           2                            27
  CLUS_2                           7                            26
  CLUS_3                           5                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(17Q25.3) MUTATED        2      1      0      9      2      0
  AMP PEAK 3(17Q25.3) WILD-TYPE      6      7     11     16     21      5
D3V5, multiclass
        clus
vv       AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           1                             7
  CLUS_3                           0                            11
  CLUS_4                           9                            16
  CLUS_5                           2                            21
  CLUS_6                           0                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(17Q25.3) MUTATED        3      0     11      0
  AMP PEAK 3(17Q25.3) WILD-TYPE     14     13     17     22
D3V6, multiclass
        clus
vv       AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE
  CLUS_1                           3                            14
  CLUS_2                           0                            13
  CLUS_3                          11                            17
  CLUS_4                           0                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(17Q25.3) MUTATED        2      2      5      0      1      3
  AMP PEAK 3(17Q25.3) WILD-TYPE     18      5     12      9      7      4
                               vv
clus                            CLUS_7
  AMP PEAK 3(17Q25.3) MUTATED        1
  AMP PEAK 3(17Q25.3) WILD-TYPE      5
D3V7, multiclass
        clus
vv       AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           2                             5
  CLUS_3                           5                            12
  CLUS_4                           0                             9
  CLUS_5                           1                             7
  CLUS_6                           3                             4
  CLUS_7                           1                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(17Q25.3) MUTATED        0      8      1      5
  AMP PEAK 3(17Q25.3) WILD-TYPE     18     20     15      7
D3V8, multiclass
        clus
vv       AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE
  CLUS_1                           0                            18
  CLUS_2                           8                            20
  CLUS_3                           1                            15
  CLUS_4                           5                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = DEL PEAK  1(1P36.12) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.12) MUTATED        7      2      7      6      0      3
  DEL PEAK  1(1P36.12) WILD-TYPE     15      5      3     25      6      1
D4V1, multiclass
        clus
vv       DEL PEAK  1(1P36.12) MUTATED DEL PEAK  1(1P36.12) WILD-TYPE
  CLUS_1                            7                             15
  CLUS_2                            2                              5
  CLUS_3                            7                              3
  CLUS_4                            6                             25
  CLUS_5                            0                              6
  CLUS_6                            3                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.12) MUTATED       10      3      7      5
  DEL PEAK  1(1P36.12) WILD-TYPE     18     11      7     19
D4V2, multiclass
        clus
vv       DEL PEAK  1(1P36.12) MUTATED DEL PEAK  1(1P36.12) WILD-TYPE
  CLUS_1                           10                             18
  CLUS_2                            3                             11
  CLUS_3                            7                              7
  CLUS_4                            5                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.12) MUTATED       10      5      7      3
  DEL PEAK  1(1P36.12) WILD-TYPE      8     10     25     12
D4V3, multiclass
        clus
vv       DEL PEAK  1(1P36.12) MUTATED DEL PEAK  1(1P36.12) WILD-TYPE
  CLUS_1                           10                              8
  CLUS_2                            5                             10
  CLUS_3                            7                             25
  CLUS_4                            3                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.12) MUTATED       12      6      7
  DEL PEAK  1(1P36.12) WILD-TYPE     17     27     11
D4V4, multiclass
        clus
vv       DEL PEAK  1(1P36.12) MUTATED DEL PEAK  1(1P36.12) WILD-TYPE
  CLUS_1                           12                             17
  CLUS_2                            6                             27
  CLUS_3                            7                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.12) MUTATED        3      3      2      6      9      2
  DEL PEAK  1(1P36.12) WILD-TYPE      5      5      9     19     14      3
D4V5, multiclass
        clus
vv       DEL PEAK  1(1P36.12) MUTATED DEL PEAK  1(1P36.12) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                            3                              5
  CLUS_3                            2                              9
  CLUS_4                            6                             19
  CLUS_5                            9                             14
  CLUS_6                            2                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.12) MUTATED        5      2      8     10
  DEL PEAK  1(1P36.12) WILD-TYPE     12     11     20     12
D4V6, multiclass
        clus
vv       DEL PEAK  1(1P36.12) MUTATED DEL PEAK  1(1P36.12) WILD-TYPE
  CLUS_1                            5                             12
  CLUS_2                            2                             11
  CLUS_3                            8                             20
  CLUS_4                           10                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.12) MUTATED        8      1      3      2      6      4
  DEL PEAK  1(1P36.12) WILD-TYPE     12      6     14      7      2      3
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.12) MUTATED        1
  DEL PEAK  1(1P36.12) WILD-TYPE      5
D4V7, multiclass
        clus
vv       DEL PEAK  1(1P36.12) MUTATED DEL PEAK  1(1P36.12) WILD-TYPE
  CLUS_1                            8                             12
  CLUS_2                            1                              6
  CLUS_3                            3                             14
  CLUS_4                            2                              7
  CLUS_5                            6                              2
  CLUS_6                            4                              3
  CLUS_7                            1                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.12) MUTATED        4      7     10      4
  DEL PEAK  1(1P36.12) WILD-TYPE     14     21      6      8
D4V8, multiclass
        clus
vv       DEL PEAK  1(1P36.12) MUTATED DEL PEAK  1(1P36.12) WILD-TYPE
  CLUS_1                            4                             14
  CLUS_2                            7                             21
  CLUS_3                           10                              6
  CLUS_4                            4                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = DEL PEAK  2(1P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P12) MUTATED        6      2      5      4      0      1
  DEL PEAK  2(1P12) WILD-TYPE     16      5      5     27      6      3
D5V1, multiclass
        clus
vv       DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE
  CLUS_1                         6                          16
  CLUS_2                         2                           5
  CLUS_3                         5                           5
  CLUS_4                         4                          27
  CLUS_5                         0                           6
  CLUS_6                         1                           3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P12) MUTATED        8      1      6      3
  DEL PEAK  2(1P12) WILD-TYPE     20     13      8     21
D5V2, multiclass
        clus
vv       DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE
  CLUS_1                         8                          20
  CLUS_2                         1                          13
  CLUS_3                         6                           8
  CLUS_4                         3                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P12) MUTATED        9      4      4      1
  DEL PEAK  2(1P12) WILD-TYPE      9     11     28     14
D5V3, multiclass
        clus
vv       DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE
  CLUS_1                         9                           9
  CLUS_2                         4                          11
  CLUS_3                         4                          28
  CLUS_4                         1                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P12) MUTATED        9      4      5
  DEL PEAK  2(1P12) WILD-TYPE     20     29     13
D5V4, multiclass
        clus
vv       DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE
  CLUS_1                         9                          20
  CLUS_2                         4                          29
  CLUS_3                         5                          13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P12) MUTATED        2      2      1      5      7      1
  DEL PEAK  2(1P12) WILD-TYPE      6      6     10     20     16      4
D5V5, multiclass
        clus
vv       DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE
  CLUS_1                         2                           6
  CLUS_2                         2                           6
  CLUS_3                         1                          10
  CLUS_4                         5                          20
  CLUS_5                         7                          16
  CLUS_6                         1                           4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P12) MUTATED        4      0      6      8
  DEL PEAK  2(1P12) WILD-TYPE     13     13     22     14
D5V6, multiclass
        clus
vv       DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE
  CLUS_1                         4                          13
  CLUS_2                         0                          13
  CLUS_3                         6                          22
  CLUS_4                         8                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1P12) MUTATED        7      1      1      0      5      4      0
  DEL PEAK  2(1P12) WILD-TYPE     13      6     16      9      3      3      6
D5V7, multiclass
        clus
vv       DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE
  CLUS_1                         7                          13
  CLUS_2                         1                           6
  CLUS_3                         1                          16
  CLUS_4                         0                           9
  CLUS_5                         5                           3
  CLUS_6                         4                           3
  CLUS_7                         0                           6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P12) MUTATED        3      5      7      3
  DEL PEAK  2(1P12) WILD-TYPE     15     23      9      9
D5V8, multiclass
        clus
vv       DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE
  CLUS_1                         3                          15
  CLUS_2                         5                          23
  CLUS_3                         7                           9
  CLUS_4                         3                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = DEL PEAK  3(2Q37.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.2) MUTATED        0      0      0      3      0      0
  DEL PEAK  3(2Q37.2) WILD-TYPE     22      7     10     28      6      4
D6V1, multiclass
        clus
vv       DEL PEAK  3(2Q37.2) MUTATED DEL PEAK  3(2Q37.2) WILD-TYPE
  CLUS_1                           0                            22
  CLUS_2                           0                             7
  CLUS_3                           0                            10
  CLUS_4                           3                            28
  CLUS_5                           0                             6
  CLUS_6                           0                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.2) MUTATED        0      1      0      2
  DEL PEAK  3(2Q37.2) WILD-TYPE     28     13     14     22
D6V2, multiclass
        clus
vv       DEL PEAK  3(2Q37.2) MUTATED DEL PEAK  3(2Q37.2) WILD-TYPE
  CLUS_1                           0                            28
  CLUS_2                           1                            13
  CLUS_3                           0                            14
  CLUS_4                           2                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.2) MUTATED        0      0      2      1
  DEL PEAK  3(2Q37.2) WILD-TYPE     18     15     30     14
D6V3, multiclass
        clus
vv       DEL PEAK  3(2Q37.2) MUTATED DEL PEAK  3(2Q37.2) WILD-TYPE
  CLUS_1                           0                            18
  CLUS_2                           0                            15
  CLUS_3                           2                            30
  CLUS_4                           1                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.2) MUTATED        0      3      0
  DEL PEAK  3(2Q37.2) WILD-TYPE     29     30     18
D6V4, multiclass
        clus
vv       DEL PEAK  3(2Q37.2) MUTATED DEL PEAK  3(2Q37.2) WILD-TYPE
  CLUS_1                           0                            29
  CLUS_2                           3                            30
  CLUS_3                           0                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.2) MUTATED        0      0      1      2      0      0
  DEL PEAK  3(2Q37.2) WILD-TYPE      8      8     10     23     23      5
D6V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.2) MUTATED DEL PEAK  3(2Q37.2) WILD-TYPE
  CLUS_1                           0                             8
  CLUS_2                           0                             8
  CLUS_3                           1                            10
  CLUS_4                           2                            23
  CLUS_5                           0                            23
  CLUS_6                           0                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.2) MUTATED        0      1      2      0
  DEL PEAK  3(2Q37.2) WILD-TYPE     17     12     26     22
D6V6, multiclass
        clus
vv       DEL PEAK  3(2Q37.2) MUTATED DEL PEAK  3(2Q37.2) WILD-TYPE
  CLUS_1                           0                            17
  CLUS_2                           1                            12
  CLUS_3                           2                            26
  CLUS_4                           0                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.2) MUTATED        0      0      2      0      0      0
  DEL PEAK  3(2Q37.2) WILD-TYPE     20      7     15      9      8      7
                               vv
clus                            CLUS_7
  DEL PEAK  3(2Q37.2) MUTATED        1
  DEL PEAK  3(2Q37.2) WILD-TYPE      5
D6V7, multiclass
        clus
vv       DEL PEAK  3(2Q37.2) MUTATED DEL PEAK  3(2Q37.2) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           0                             7
  CLUS_3                           2                            15
  CLUS_4                           0                             9
  CLUS_5                           0                             8
  CLUS_6                           0                             7
  CLUS_7                           1                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.2) MUTATED        0      3      0      0
  DEL PEAK  3(2Q37.2) WILD-TYPE     18     25     16     12
D6V8, multiclass
        clus
vv       DEL PEAK  3(2Q37.2) MUTATED DEL PEAK  3(2Q37.2) WILD-TYPE
  CLUS_1                           0                            18
  CLUS_2                           3                            25
  CLUS_3                           0                            16
  CLUS_4                           0                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = DEL PEAK  4(3P25.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P25.2) MUTATED       17      7      8      2      6      3
  DEL PEAK  4(3P25.2) WILD-TYPE      5      0      2     29      0      1
D7V1, multiclass
        clus
vv       DEL PEAK  4(3P25.2) MUTATED DEL PEAK  4(3P25.2) WILD-TYPE
  CLUS_1                          17                             5
  CLUS_2                           7                             0
  CLUS_3                           8                             2
  CLUS_4                           2                            29
  CLUS_5                           6                             0
  CLUS_6                           3                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P25.2) MUTATED       28      3     10      2
  DEL PEAK  4(3P25.2) WILD-TYPE      0     11      4     22
D7V2, multiclass
        clus
vv       DEL PEAK  4(3P25.2) MUTATED DEL PEAK  4(3P25.2) WILD-TYPE
  CLUS_1                          28                             0
  CLUS_2                           3                            11
  CLUS_3                          10                             4
  CLUS_4                           2                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P25.2) MUTATED       18     10      2     13
  DEL PEAK  4(3P25.2) WILD-TYPE      0      5     30      2
D7V3, multiclass
        clus
vv       DEL PEAK  4(3P25.2) MUTATED DEL PEAK  4(3P25.2) WILD-TYPE
  CLUS_1                          18                             0
  CLUS_2                          10                             5
  CLUS_3                           2                            30
  CLUS_4                          13                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P25.2) MUTATED       29      2     12
  DEL PEAK  4(3P25.2) WILD-TYPE      0     31      6
D7V4, multiclass
        clus
vv       DEL PEAK  4(3P25.2) MUTATED DEL PEAK  4(3P25.2) WILD-TYPE
  CLUS_1                          29                             0
  CLUS_2                           2                            31
  CLUS_3                          12                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P25.2) MUTATED        8      5      2      2     23      3
  DEL PEAK  4(3P25.2) WILD-TYPE      0      3      9     23      0      2
D7V5, multiclass
        clus
vv       DEL PEAK  4(3P25.2) MUTATED DEL PEAK  4(3P25.2) WILD-TYPE
  CLUS_1                           8                             0
  CLUS_2                           5                             3
  CLUS_3                           2                             9
  CLUS_4                           2                            23
  CLUS_5                          23                             0
  CLUS_6                           3                             2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P25.2) MUTATED       17      1      3     22
  DEL PEAK  4(3P25.2) WILD-TYPE      0     12     25      0
D7V6, multiclass
        clus
vv       DEL PEAK  4(3P25.2) MUTATED DEL PEAK  4(3P25.2) WILD-TYPE
  CLUS_1                          17                             0
  CLUS_2                           1                            12
  CLUS_3                           3                            25
  CLUS_4                          22                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P25.2) MUTATED       20      6      2      4      5      2
  DEL PEAK  4(3P25.2) WILD-TYPE      0      1     15      5      3      5
                               vv
clus                            CLUS_7
  DEL PEAK  4(3P25.2) MUTATED        3
  DEL PEAK  4(3P25.2) WILD-TYPE      3
D7V7, multiclass
        clus
vv       DEL PEAK  4(3P25.2) MUTATED DEL PEAK  4(3P25.2) WILD-TYPE
  CLUS_1                          20                             0
  CLUS_2                           6                             1
  CLUS_3                           2                            15
  CLUS_4                           4                             5
  CLUS_5                           5                             3
  CLUS_6                           2                             5
  CLUS_7                           3                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P25.2) MUTATED       17      3     16      6
  DEL PEAK  4(3P25.2) WILD-TYPE      1     25      0      6
D7V8, multiclass
        clus
vv       DEL PEAK  4(3P25.2) MUTATED DEL PEAK  4(3P25.2) WILD-TYPE
  CLUS_1                          17                             1
  CLUS_2                           3                            25
  CLUS_3                          16                             0
  CLUS_4                           6                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = DEL PEAK  5(3P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P25.1) MUTATED       17      7      8      2      6      3
  DEL PEAK  5(3P25.1) WILD-TYPE      5      0      2     29      0      1
D8V1, multiclass
        clus
vv       DEL PEAK  5(3P25.1) MUTATED DEL PEAK  5(3P25.1) WILD-TYPE
  CLUS_1                          17                             5
  CLUS_2                           7                             0
  CLUS_3                           8                             2
  CLUS_4                           2                            29
  CLUS_5                           6                             0
  CLUS_6                           3                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P25.1) MUTATED       28      3     10      2
  DEL PEAK  5(3P25.1) WILD-TYPE      0     11      4     22
D8V2, multiclass
        clus
vv       DEL PEAK  5(3P25.1) MUTATED DEL PEAK  5(3P25.1) WILD-TYPE
  CLUS_1                          28                             0
  CLUS_2                           3                            11
  CLUS_3                          10                             4
  CLUS_4                           2                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P25.1) MUTATED       18     10      2     13
  DEL PEAK  5(3P25.1) WILD-TYPE      0      5     30      2
D8V3, multiclass
        clus
vv       DEL PEAK  5(3P25.1) MUTATED DEL PEAK  5(3P25.1) WILD-TYPE
  CLUS_1                          18                             0
  CLUS_2                          10                             5
  CLUS_3                           2                            30
  CLUS_4                          13                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P25.1) MUTATED       29      2     12
  DEL PEAK  5(3P25.1) WILD-TYPE      0     31      6
D8V4, multiclass
        clus
vv       DEL PEAK  5(3P25.1) MUTATED DEL PEAK  5(3P25.1) WILD-TYPE
  CLUS_1                          29                             0
  CLUS_2                           2                            31
  CLUS_3                          12                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P25.1) MUTATED        8      5      2      2     23      3
  DEL PEAK  5(3P25.1) WILD-TYPE      0      3      9     23      0      2
D8V5, multiclass
        clus
vv       DEL PEAK  5(3P25.1) MUTATED DEL PEAK  5(3P25.1) WILD-TYPE
  CLUS_1                           8                             0
  CLUS_2                           5                             3
  CLUS_3                           2                             9
  CLUS_4                           2                            23
  CLUS_5                          23                             0
  CLUS_6                           3                             2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P25.1) MUTATED       17      1      3     22
  DEL PEAK  5(3P25.1) WILD-TYPE      0     12     25      0
D8V6, multiclass
        clus
vv       DEL PEAK  5(3P25.1) MUTATED DEL PEAK  5(3P25.1) WILD-TYPE
  CLUS_1                          17                             0
  CLUS_2                           1                            12
  CLUS_3                           3                            25
  CLUS_4                          22                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P25.1) MUTATED       20      6      2      4      5      2
  DEL PEAK  5(3P25.1) WILD-TYPE      0      1     15      5      3      5
                               vv
clus                            CLUS_7
  DEL PEAK  5(3P25.1) MUTATED        3
  DEL PEAK  5(3P25.1) WILD-TYPE      3
D8V7, multiclass
        clus
vv       DEL PEAK  5(3P25.1) MUTATED DEL PEAK  5(3P25.1) WILD-TYPE
  CLUS_1                          20                             0
  CLUS_2                           6                             1
  CLUS_3                           2                            15
  CLUS_4                           4                             5
  CLUS_5                           5                             3
  CLUS_6                           2                             5
  CLUS_7                           3                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P25.1) MUTATED       17      3     16      6
  DEL PEAK  5(3P25.1) WILD-TYPE      1     25      0      6
D8V8, multiclass
        clus
vv       DEL PEAK  5(3P25.1) MUTATED DEL PEAK  5(3P25.1) WILD-TYPE
  CLUS_1                          17                             1
  CLUS_2                           3                            25
  CLUS_3                          16                             0
  CLUS_4                           6                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DEL PEAK  6(3P22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P22.2) MUTATED       17      7      8      2      6      3
  DEL PEAK  6(3P22.2) WILD-TYPE      5      0      2     29      0      1
D9V1, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          17                             5
  CLUS_2                           7                             0
  CLUS_3                           8                             2
  CLUS_4                           2                            29
  CLUS_5                           6                             0
  CLUS_6                           3                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P22.2) MUTATED       28      3     10      2
  DEL PEAK  6(3P22.2) WILD-TYPE      0     11      4     22
D9V2, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          28                             0
  CLUS_2                           3                            11
  CLUS_3                          10                             4
  CLUS_4                           2                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P22.2) MUTATED       18     10      2     13
  DEL PEAK  6(3P22.2) WILD-TYPE      0      5     30      2
D9V3, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          18                             0
  CLUS_2                          10                             5
  CLUS_3                           2                            30
  CLUS_4                          13                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P22.2) MUTATED       29      2     12
  DEL PEAK  6(3P22.2) WILD-TYPE      0     31      6
D9V4, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          29                             0
  CLUS_2                           2                            31
  CLUS_3                          12                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P22.2) MUTATED        8      5      2      2     23      3
  DEL PEAK  6(3P22.2) WILD-TYPE      0      3      9     23      0      2
D9V5, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                           8                             0
  CLUS_2                           5                             3
  CLUS_3                           2                             9
  CLUS_4                           2                            23
  CLUS_5                          23                             0
  CLUS_6                           3                             2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P22.2) MUTATED       17      1      3     22
  DEL PEAK  6(3P22.2) WILD-TYPE      0     12     25      0
D9V6, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          17                             0
  CLUS_2                           1                            12
  CLUS_3                           3                            25
  CLUS_4                          22                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P22.2) MUTATED       20      6      2      4      5      2
  DEL PEAK  6(3P22.2) WILD-TYPE      0      1     15      5      3      5
                               vv
clus                            CLUS_7
  DEL PEAK  6(3P22.2) MUTATED        3
  DEL PEAK  6(3P22.2) WILD-TYPE      3
D9V7, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          20                             0
  CLUS_2                           6                             1
  CLUS_3                           2                            15
  CLUS_4                           4                             5
  CLUS_5                           5                             3
  CLUS_6                           2                             5
  CLUS_7                           3                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P22.2) MUTATED       17      3     16      6
  DEL PEAK  6(3P22.2) WILD-TYPE      1     25      0      6
D9V8, multiclass
        clus
vv       DEL PEAK  6(3P22.2) MUTATED DEL PEAK  6(3P22.2) WILD-TYPE
  CLUS_1                          17                             1
  CLUS_2                           3                            25
  CLUS_3                          16                             0
  CLUS_4                           6                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK  7(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.2) MUTATED       17      7      8      2      6      4
  DEL PEAK  7(3P14.2) WILD-TYPE      5      0      2     29      0      0
D10V1, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          17                             5
  CLUS_2                           7                             0
  CLUS_3                           8                             2
  CLUS_4                           2                            29
  CLUS_5                           6                             0
  CLUS_6                           4                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.2) MUTATED       28      4     10      2
  DEL PEAK  7(3P14.2) WILD-TYPE      0     10      4     22
D10V2, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          28                             0
  CLUS_2                           4                            10
  CLUS_3                          10                             4
  CLUS_4                           2                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.2) MUTATED       18     10      3     13
  DEL PEAK  7(3P14.2) WILD-TYPE      0      5     29      2
D10V3, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          18                             0
  CLUS_2                          10                             5
  CLUS_3                           3                            29
  CLUS_4                          13                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.2) MUTATED       29      2     13
  DEL PEAK  7(3P14.2) WILD-TYPE      0     31      5
D10V4, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          29                             0
  CLUS_2                           2                            31
  CLUS_3                          13                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.2) MUTATED        8      6      2      2     23      3
  DEL PEAK  7(3P14.2) WILD-TYPE      0      2      9     23      0      2
D10V5, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                           8                             0
  CLUS_2                           6                             2
  CLUS_3                           2                             9
  CLUS_4                           2                            23
  CLUS_5                          23                             0
  CLUS_6                           3                             2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.2) MUTATED       17      2      3     22
  DEL PEAK  7(3P14.2) WILD-TYPE      0     11     25      0
D10V6, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          17                             0
  CLUS_2                           2                            11
  CLUS_3                           3                            25
  CLUS_4                          22                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.2) MUTATED       20      6      2      5      5      2
  DEL PEAK  7(3P14.2) WILD-TYPE      0      1     15      4      3      5
                               vv
clus                            CLUS_7
  DEL PEAK  7(3P14.2) MUTATED        3
  DEL PEAK  7(3P14.2) WILD-TYPE      3
D10V7, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          20                             0
  CLUS_2                           6                             1
  CLUS_3                           2                            15
  CLUS_4                           5                             4
  CLUS_5                           5                             3
  CLUS_6                           2                             5
  CLUS_7                           3                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.2) MUTATED       18      3     16      6
  DEL PEAK  7(3P14.2) WILD-TYPE      0     25      0      6
D10V8, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          18                             0
  CLUS_2                           3                            25
  CLUS_3                          16                             0
  CLUS_4                           6                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK  8(3Q24) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q24) MUTATED       17      7      8      2      6      4
  DEL PEAK  8(3Q24) WILD-TYPE      5      0      2     29      0      0
D11V1, multiclass
        clus
vv       DEL PEAK  8(3Q24) MUTATED DEL PEAK  8(3Q24) WILD-TYPE
  CLUS_1                        17                           5
  CLUS_2                         7                           0
  CLUS_3                         8                           2
  CLUS_4                         2                          29
  CLUS_5                         6                           0
  CLUS_6                         4                           0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q24) MUTATED       28      4     10      2
  DEL PEAK  8(3Q24) WILD-TYPE      0     10      4     22
D11V2, multiclass
        clus
vv       DEL PEAK  8(3Q24) MUTATED DEL PEAK  8(3Q24) WILD-TYPE
  CLUS_1                        28                           0
  CLUS_2                         4                          10
  CLUS_3                        10                           4
  CLUS_4                         2                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q24) MUTATED       18     10      3     13
  DEL PEAK  8(3Q24) WILD-TYPE      0      5     29      2
D11V3, multiclass
        clus
vv       DEL PEAK  8(3Q24) MUTATED DEL PEAK  8(3Q24) WILD-TYPE
  CLUS_1                        18                           0
  CLUS_2                        10                           5
  CLUS_3                         3                          29
  CLUS_4                        13                           2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q24) MUTATED       29      2     13
  DEL PEAK  8(3Q24) WILD-TYPE      0     31      5
D11V4, multiclass
        clus
vv       DEL PEAK  8(3Q24) MUTATED DEL PEAK  8(3Q24) WILD-TYPE
  CLUS_1                        29                           0
  CLUS_2                         2                          31
  CLUS_3                        13                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q24) MUTATED        8      6      2      2     23      3
  DEL PEAK  8(3Q24) WILD-TYPE      0      2      9     23      0      2
D11V5, multiclass
        clus
vv       DEL PEAK  8(3Q24) MUTATED DEL PEAK  8(3Q24) WILD-TYPE
  CLUS_1                         8                           0
  CLUS_2                         6                           2
  CLUS_3                         2                           9
  CLUS_4                         2                          23
  CLUS_5                        23                           0
  CLUS_6                         3                           2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q24) MUTATED       17      2      3     22
  DEL PEAK  8(3Q24) WILD-TYPE      0     11     25      0
D11V6, multiclass
        clus
vv       DEL PEAK  8(3Q24) MUTATED DEL PEAK  8(3Q24) WILD-TYPE
  CLUS_1                        17                           0
  CLUS_2                         2                          11
  CLUS_3                         3                          25
  CLUS_4                        22                           0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  8(3Q24) MUTATED       20      6      2      5      5      2      3
  DEL PEAK  8(3Q24) WILD-TYPE      0      1     15      4      3      5      3
D11V7, multiclass
        clus
vv       DEL PEAK  8(3Q24) MUTATED DEL PEAK  8(3Q24) WILD-TYPE
  CLUS_1                        20                           0
  CLUS_2                         6                           1
  CLUS_3                         2                          15
  CLUS_4                         5                           4
  CLUS_5                         5                           3
  CLUS_6                         2                           5
  CLUS_7                         3                           3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q24) MUTATED       18      3     16      6
  DEL PEAK  8(3Q24) WILD-TYPE      0     25      0      6
D11V8, multiclass
        clus
vv       DEL PEAK  8(3Q24) MUTATED DEL PEAK  8(3Q24) WILD-TYPE
  CLUS_1                        18                           0
  CLUS_2                         3                          25
  CLUS_3                        16                           0
  CLUS_4                         6                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK  9(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3Q29) MUTATED       17      7      8      2      6      4
  DEL PEAK  9(3Q29) WILD-TYPE      5      0      2     29      0      0
D12V1, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                        17                           5
  CLUS_2                         7                           0
  CLUS_3                         8                           2
  CLUS_4                         2                          29
  CLUS_5                         6                           0
  CLUS_6                         4                           0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q29) MUTATED       28      4     10      2
  DEL PEAK  9(3Q29) WILD-TYPE      0     10      4     22
D12V2, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                        28                           0
  CLUS_2                         4                          10
  CLUS_3                        10                           4
  CLUS_4                         2                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q29) MUTATED       18     10      3     13
  DEL PEAK  9(3Q29) WILD-TYPE      0      5     29      2
D12V3, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                        18                           0
  CLUS_2                        10                           5
  CLUS_3                         3                          29
  CLUS_4                        13                           2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q29) MUTATED       29      2     13
  DEL PEAK  9(3Q29) WILD-TYPE      0     31      5
D12V4, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                        29                           0
  CLUS_2                         2                          31
  CLUS_3                        13                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3Q29) MUTATED        8      6      2      2     23      3
  DEL PEAK  9(3Q29) WILD-TYPE      0      2      9     23      0      2
D12V5, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                         8                           0
  CLUS_2                         6                           2
  CLUS_3                         2                           9
  CLUS_4                         2                          23
  CLUS_5                        23                           0
  CLUS_6                         3                           2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q29) MUTATED       17      2      3     22
  DEL PEAK  9(3Q29) WILD-TYPE      0     11     25      0
D12V6, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                        17                           0
  CLUS_2                         2                          11
  CLUS_3                         3                          25
  CLUS_4                        22                           0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  9(3Q29) MUTATED       20      6      2      5      5      2      3
  DEL PEAK  9(3Q29) WILD-TYPE      0      1     15      4      3      5      3
D12V7, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                        20                           0
  CLUS_2                         6                           1
  CLUS_3                         2                          15
  CLUS_4                         5                           4
  CLUS_5                         5                           3
  CLUS_6                         2                           5
  CLUS_7                         3                           3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q29) MUTATED       18      3     16      6
  DEL PEAK  9(3Q29) WILD-TYPE      0     25      0      6
D12V8, multiclass
        clus
vv       DEL PEAK  9(3Q29) MUTATED DEL PEAK  9(3Q29) WILD-TYPE
  CLUS_1                        18                           0
  CLUS_2                         3                          25
  CLUS_3                        16                           0
  CLUS_4                         6                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK 10(6Q25.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q25.2) MUTATED        0      7      2      9      5      0
  DEL PEAK 10(6Q25.2) WILD-TYPE     22      0      8     22      1      4
D13V1, multiclass
        clus
vv       DEL PEAK 10(6Q25.2) MUTATED DEL PEAK 10(6Q25.2) WILD-TYPE
  CLUS_1                           0                            22
  CLUS_2                           7                             0
  CLUS_3                           2                             8
  CLUS_4                           9                            22
  CLUS_5                           5                             1
  CLUS_6                           0                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q25.2) MUTATED       13      1      1      8
  DEL PEAK 10(6Q25.2) WILD-TYPE     15     13     13     16
D13V2, multiclass
        clus
vv       DEL PEAK 10(6Q25.2) MUTATED DEL PEAK 10(6Q25.2) WILD-TYPE
  CLUS_1                          13                            15
  CLUS_2                           1                            13
  CLUS_3                           1                            13
  CLUS_4                           8                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q25.2) MUTATED        6      2      9      6
  DEL PEAK 10(6Q25.2) WILD-TYPE     12     13     23      9
D13V3, multiclass
        clus
vv       DEL PEAK 10(6Q25.2) MUTATED DEL PEAK 10(6Q25.2) WILD-TYPE
  CLUS_1                           6                            12
  CLUS_2                           2                            13
  CLUS_3                           9                            23
  CLUS_4                           6                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q25.2) MUTATED       13      9      1
  DEL PEAK 10(6Q25.2) WILD-TYPE     16     24     17
D13V4, multiclass
        clus
vv       DEL PEAK 10(6Q25.2) MUTATED DEL PEAK 10(6Q25.2) WILD-TYPE
  CLUS_1                          13                            16
  CLUS_2                           9                            24
  CLUS_3                           1                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q25.2) MUTATED        2      2      2      7     10      0
  DEL PEAK 10(6Q25.2) WILD-TYPE      6      6      9     18     13      5
D13V5, multiclass
        clus
vv       DEL PEAK 10(6Q25.2) MUTATED DEL PEAK 10(6Q25.2) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           2                             6
  CLUS_3                           2                             9
  CLUS_4                           7                            18
  CLUS_5                          10                            13
  CLUS_6                           0                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q25.2) MUTATED        6      2      8      7
  DEL PEAK 10(6Q25.2) WILD-TYPE     11     11     20     15
D13V6, multiclass
        clus
vv       DEL PEAK 10(6Q25.2) MUTATED DEL PEAK 10(6Q25.2) WILD-TYPE
  CLUS_1                           6                            11
  CLUS_2                           2                            11
  CLUS_3                           8                            20
  CLUS_4                           7                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q25.2) MUTATED       11      2      4      2      0      2
  DEL PEAK 10(6Q25.2) WILD-TYPE      9      5     13      7      8      5
                               vv
clus                            CLUS_7
  DEL PEAK 10(6Q25.2) MUTATED        2
  DEL PEAK 10(6Q25.2) WILD-TYPE      4
D13V7, multiclass
        clus
vv       DEL PEAK 10(6Q25.2) MUTATED DEL PEAK 10(6Q25.2) WILD-TYPE
  CLUS_1                          11                             9
  CLUS_2                           2                             5
  CLUS_3                           4                            13
  CLUS_4                           2                             7
  CLUS_5                           0                             8
  CLUS_6                           2                             5
  CLUS_7                           2                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q25.2) MUTATED       11      8      2      2
  DEL PEAK 10(6Q25.2) WILD-TYPE      7     20     14     10
D13V8, multiclass
        clus
vv       DEL PEAK 10(6Q25.2) MUTATED DEL PEAK 10(6Q25.2) WILD-TYPE
  CLUS_1                          11                             7
  CLUS_2                           8                            20
  CLUS_3                           2                            14
  CLUS_4                           2                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK 11(6Q27) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q27) MUTATED        0      7      3      9      5      0
  DEL PEAK 11(6Q27) WILD-TYPE     22      0      7     22      1      4
D14V1, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                         0                          22
  CLUS_2                         7                           0
  CLUS_3                         3                           7
  CLUS_4                         9                          22
  CLUS_5                         5                           1
  CLUS_6                         0                           4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q27) MUTATED       14      1      1      8
  DEL PEAK 11(6Q27) WILD-TYPE     14     13     13     16
D14V2, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        14                          14
  CLUS_2                         1                          13
  CLUS_3                         1                          13
  CLUS_4                         8                          16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q27) MUTATED        7      2      9      6
  DEL PEAK 11(6Q27) WILD-TYPE     11     13     23      9
D14V3, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                         7                          11
  CLUS_2                         2                          13
  CLUS_3                         9                          23
  CLUS_4                         6                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED       14      9      1
  DEL PEAK 11(6Q27) WILD-TYPE     15     24     17
D14V4, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        14                          15
  CLUS_2                         9                          24
  CLUS_3                         1                          17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q27) MUTATED        2      3      2      6     11      0
  DEL PEAK 11(6Q27) WILD-TYPE      6      5      9     19     12      5
D14V5, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                         2                           6
  CLUS_2                         3                           5
  CLUS_3                         2                           9
  CLUS_4                         6                          19
  CLUS_5                        11                          12
  CLUS_6                         0                           5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q27) MUTATED        6      3      7      8
  DEL PEAK 11(6Q27) WILD-TYPE     11     10     21     14
D14V6, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                         6                          11
  CLUS_2                         3                          10
  CLUS_3                         7                          21
  CLUS_4                         8                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(6Q27) MUTATED       12      2      3      3      0      2      2
  DEL PEAK 11(6Q27) WILD-TYPE      8      5     14      6      8      5      4
D14V7, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        12                           8
  CLUS_2                         2                           5
  CLUS_3                         3                          14
  CLUS_4                         3                           6
  CLUS_5                         0                           8
  CLUS_6                         2                           5
  CLUS_7                         2                           4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q27) MUTATED       11      7      3      3
  DEL PEAK 11(6Q27) WILD-TYPE      7     21     13      9
D14V8, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        11                           7
  CLUS_2                         7                          21
  CLUS_3                         3                          13
  CLUS_4                         3                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK 12(8P11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(8P11.22) MUTATED        6      7      0      1      4      1
  DEL PEAK 12(8P11.22) WILD-TYPE     16      0     10     30      2      3
D15V1, multiclass
        clus
vv       DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE
  CLUS_1                            6                             16
  CLUS_2                            7                              0
  CLUS_3                            0                             10
  CLUS_4                            1                             30
  CLUS_5                            4                              2
  CLUS_6                            1                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P11.22) MUTATED       16      1      1      1
  DEL PEAK 12(8P11.22) WILD-TYPE     12     13     13     23
D15V2, multiclass
        clus
vv       DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE
  CLUS_1                           16                             12
  CLUS_2                            1                             13
  CLUS_3                            1                             13
  CLUS_4                            1                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P11.22) MUTATED        8      3      1      7
  DEL PEAK 12(8P11.22) WILD-TYPE     10     12     31      8
D15V3, multiclass
        clus
vv       DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE
  CLUS_1                            8                             10
  CLUS_2                            3                             12
  CLUS_3                            1                             31
  CLUS_4                            7                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P11.22) MUTATED       16      1      2
  DEL PEAK 12(8P11.22) WILD-TYPE     13     32     16
D15V4, multiclass
        clus
vv       DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE
  CLUS_1                           16                             13
  CLUS_2                            1                             32
  CLUS_3                            2                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(8P11.22) MUTATED        1      5      0      0     12      1
  DEL PEAK 12(8P11.22) WILD-TYPE      7      3     11     25     11      4
D15V5, multiclass
        clus
vv       DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            5                              3
  CLUS_3                            0                             11
  CLUS_4                            0                             25
  CLUS_5                           12                             11
  CLUS_6                            1                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P11.22) MUTATED        7      1      0     11
  DEL PEAK 12(8P11.22) WILD-TYPE     10     12     28     11
D15V6, multiclass
        clus
vv       DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE
  CLUS_1                            7                             10
  CLUS_2                            1                             12
  CLUS_3                            0                             28
  CLUS_4                           11                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(8P11.22) MUTATED       12      4      0      1      0      0
  DEL PEAK 12(8P11.22) WILD-TYPE      8      3     17      8      8      7
                                vv
clus                             CLUS_7
  DEL PEAK 12(8P11.22) MUTATED        2
  DEL PEAK 12(8P11.22) WILD-TYPE      4
D15V7, multiclass
        clus
vv       DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE
  CLUS_1                           12                              8
  CLUS_2                            4                              3
  CLUS_3                            0                             17
  CLUS_4                            1                              8
  CLUS_5                            0                              8
  CLUS_6                            0                              7
  CLUS_7                            2                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P11.22) MUTATED       11      0      7      1
  DEL PEAK 12(8P11.22) WILD-TYPE      7     28      9     11
D15V8, multiclass
        clus
vv       DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE
  CLUS_1                           11                              7
  CLUS_2                            0                             28
  CLUS_3                            7                              9
  CLUS_4                            1                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK 14(11Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(11Q24.3) MUTATED        0      0      1      6      0      0
  DEL PEAK 14(11Q24.3) WILD-TYPE     22      7      9     25      6      4
D16V1, multiclass
        clus
vv       DEL PEAK 14(11Q24.3) MUTATED DEL PEAK 14(11Q24.3) WILD-TYPE
  CLUS_1                            0                             22
  CLUS_2                            0                              7
  CLUS_3                            1                              9
  CLUS_4                            6                             25
  CLUS_5                            0                              6
  CLUS_6                            0                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q24.3) MUTATED        0      0      1      6
  DEL PEAK 14(11Q24.3) WILD-TYPE     28     14     13     18
D16V2, multiclass
        clus
vv       DEL PEAK 14(11Q24.3) MUTATED DEL PEAK 14(11Q24.3) WILD-TYPE
  CLUS_1                            0                             28
  CLUS_2                            0                             14
  CLUS_3                            1                             13
  CLUS_4                            6                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q24.3) MUTATED        0      2      5      0
  DEL PEAK 14(11Q24.3) WILD-TYPE     18     13     27     15
D16V3, multiclass
        clus
vv       DEL PEAK 14(11Q24.3) MUTATED DEL PEAK 14(11Q24.3) WILD-TYPE
  CLUS_1                            0                             18
  CLUS_2                            2                             13
  CLUS_3                            5                             27
  CLUS_4                            0                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q24.3) MUTATED        0      5      2
  DEL PEAK 14(11Q24.3) WILD-TYPE     29     28     16
D16V4, multiclass
        clus
vv       DEL PEAK 14(11Q24.3) MUTATED DEL PEAK 14(11Q24.3) WILD-TYPE
  CLUS_1                            0                             29
  CLUS_2                            5                             28
  CLUS_3                            2                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(11Q24.3) MUTATED        1      0      1      5      0      0
  DEL PEAK 14(11Q24.3) WILD-TYPE      7      8     10     20     23      5
D16V5, multiclass
        clus
vv       DEL PEAK 14(11Q24.3) MUTATED DEL PEAK 14(11Q24.3) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            0                              8
  CLUS_3                            1                             10
  CLUS_4                            5                             20
  CLUS_5                            0                             23
  CLUS_6                            0                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q24.3) MUTATED        1      1      5      0
  DEL PEAK 14(11Q24.3) WILD-TYPE     16     12     23     22
D16V6, multiclass
        clus
vv       DEL PEAK 14(11Q24.3) MUTATED DEL PEAK 14(11Q24.3) WILD-TYPE
  CLUS_1                            1                             16
  CLUS_2                            1                             12
  CLUS_3                            5                             23
  CLUS_4                            0                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(11Q24.3) MUTATED        0      2      2      0      0      0
  DEL PEAK 14(11Q24.3) WILD-TYPE     20      5     15      9      8      7
                                vv
clus                             CLUS_7
  DEL PEAK 14(11Q24.3) MUTATED        1
  DEL PEAK 14(11Q24.3) WILD-TYPE      5
D16V7, multiclass
        clus
vv       DEL PEAK 14(11Q24.3) MUTATED DEL PEAK 14(11Q24.3) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            2                              5
  CLUS_3                            2                             15
  CLUS_4                            0                              9
  CLUS_5                            0                              8
  CLUS_6                            0                              7
  CLUS_7                            1                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q24.3) MUTATED        0      3      0      2
  DEL PEAK 14(11Q24.3) WILD-TYPE     18     25     16     10
D16V8, multiclass
        clus
vv       DEL PEAK 14(11Q24.3) MUTATED DEL PEAK 14(11Q24.3) WILD-TYPE
  CLUS_1                            0                             18
  CLUS_2                            3                             25
  CLUS_3                            0                             16
  CLUS_4                            2                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK 15(16Q12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(16Q12.1) MUTATED        4      5      1      4      2      0
  DEL PEAK 15(16Q12.1) WILD-TYPE     18      2      9     27      4      4
D17V1, multiclass
        clus
vv       DEL PEAK 15(16Q12.1) MUTATED DEL PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                            4                             18
  CLUS_2                            5                              2
  CLUS_3                            1                              9
  CLUS_4                            4                             27
  CLUS_5                            2                              4
  CLUS_6                            0                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(16Q12.1) MUTATED       10      0      3      3
  DEL PEAK 15(16Q12.1) WILD-TYPE     18     14     11     21
D17V2, multiclass
        clus
vv       DEL PEAK 15(16Q12.1) MUTATED DEL PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                           10                             18
  CLUS_2                            0                             14
  CLUS_3                            3                             11
  CLUS_4                            3                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(16Q12.1) MUTATED        7      2      4      3
  DEL PEAK 15(16Q12.1) WILD-TYPE     11     13     28     12
D17V3, multiclass
        clus
vv       DEL PEAK 15(16Q12.1) MUTATED DEL PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                            7                             11
  CLUS_2                            2                             13
  CLUS_3                            4                             28
  CLUS_4                            3                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(16Q12.1) MUTATED       11      4      1
  DEL PEAK 15(16Q12.1) WILD-TYPE     18     29     17
D17V4, multiclass
        clus
vv       DEL PEAK 15(16Q12.1) MUTATED DEL PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                           11                             18
  CLUS_2                            4                             29
  CLUS_3                            1                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(16Q12.1) MUTATED        2      1      0      5      8      0
  DEL PEAK 15(16Q12.1) WILD-TYPE      6      7     11     20     15      5
D17V5, multiclass
        clus
vv       DEL PEAK 15(16Q12.1) MUTATED DEL PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            1                              7
  CLUS_3                            0                             11
  CLUS_4                            5                             20
  CLUS_5                            8                             15
  CLUS_6                            0                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(16Q12.1) MUTATED        4      0      5      7
  DEL PEAK 15(16Q12.1) WILD-TYPE     13     13     23     15
D17V6, multiclass
        clus
vv       DEL PEAK 15(16Q12.1) MUTATED DEL PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                            4                             13
  CLUS_2                            0                             13
  CLUS_3                            5                             23
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(16Q12.1) MUTATED        8      3      2      0      1      2
  DEL PEAK 15(16Q12.1) WILD-TYPE     12      4     15      9      7      5
                                vv
clus                             CLUS_7
  DEL PEAK 15(16Q12.1) MUTATED        0
  DEL PEAK 15(16Q12.1) WILD-TYPE      6
D17V7, multiclass
        clus
vv       DEL PEAK 15(16Q12.1) MUTATED DEL PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                            8                             12
  CLUS_2                            3                              4
  CLUS_3                            2                             15
  CLUS_4                            0                              9
  CLUS_5                            1                              7
  CLUS_6                            2                              5
  CLUS_7                            0                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(16Q12.1) MUTATED        7      4      4      1
  DEL PEAK 15(16Q12.1) WILD-TYPE     11     24     12     11
D17V8, multiclass
        clus
vv       DEL PEAK 15(16Q12.1) MUTATED DEL PEAK 15(16Q12.1) WILD-TYPE
  CLUS_1                            7                             11
  CLUS_2                            4                             24
  CLUS_3                            4                             12
  CLUS_4                            1                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK 16(16Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(16Q23.3) MUTATED        4      5      1      4      3      0
  DEL PEAK 16(16Q23.3) WILD-TYPE     18      2      9     27      3      4
D18V1, multiclass
        clus
vv       DEL PEAK 16(16Q23.3) MUTATED DEL PEAK 16(16Q23.3) WILD-TYPE
  CLUS_1                            4                             18
  CLUS_2                            5                              2
  CLUS_3                            1                              9
  CLUS_4                            4                             27
  CLUS_5                            3                              3
  CLUS_6                            0                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(16Q23.3) MUTATED       11      0      3      3
  DEL PEAK 16(16Q23.3) WILD-TYPE     17     14     11     21
D18V2, multiclass
        clus
vv       DEL PEAK 16(16Q23.3) MUTATED DEL PEAK 16(16Q23.3) WILD-TYPE
  CLUS_1                           11                             17
  CLUS_2                            0                             14
  CLUS_3                            3                             11
  CLUS_4                            3                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(16Q23.3) MUTATED        7      2      4      4
  DEL PEAK 16(16Q23.3) WILD-TYPE     11     13     28     11
D18V3, multiclass
        clus
vv       DEL PEAK 16(16Q23.3) MUTATED DEL PEAK 16(16Q23.3) WILD-TYPE
  CLUS_1                            7                             11
  CLUS_2                            2                             13
  CLUS_3                            4                             28
  CLUS_4                            4                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16Q23.3) MUTATED       12      4      1
  DEL PEAK 16(16Q23.3) WILD-TYPE     17     29     17
D18V4, multiclass
        clus
vv       DEL PEAK 16(16Q23.3) MUTATED DEL PEAK 16(16Q23.3) WILD-TYPE
  CLUS_1                           12                             17
  CLUS_2                            4                             29
  CLUS_3                            1                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(16Q23.3) MUTATED        2      1      0      5      9      0
  DEL PEAK 16(16Q23.3) WILD-TYPE      6      7     11     20     14      5
D18V5, multiclass
        clus
vv       DEL PEAK 16(16Q23.3) MUTATED DEL PEAK 16(16Q23.3) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            1                              7
  CLUS_3                            0                             11
  CLUS_4                            5                             20
  CLUS_5                            9                             14
  CLUS_6                            0                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(16Q23.3) MUTATED        5      0      5      7
  DEL PEAK 16(16Q23.3) WILD-TYPE     12     13     23     15
D18V6, multiclass
        clus
vv       DEL PEAK 16(16Q23.3) MUTATED DEL PEAK 16(16Q23.3) WILD-TYPE
  CLUS_1                            5                             12
  CLUS_2                            0                             13
  CLUS_3                            5                             23
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(16Q23.3) MUTATED        9      3      2      0      1      2
  DEL PEAK 16(16Q23.3) WILD-TYPE     11      4     15      9      7      5
                                vv
clus                             CLUS_7
  DEL PEAK 16(16Q23.3) MUTATED        0
  DEL PEAK 16(16Q23.3) WILD-TYPE      6
D18V7, multiclass
        clus
vv       DEL PEAK 16(16Q23.3) MUTATED DEL PEAK 16(16Q23.3) WILD-TYPE
  CLUS_1                            9                             11
  CLUS_2                            3                              4
  CLUS_3                            2                             15
  CLUS_4                            0                              9
  CLUS_5                            1                              7
  CLUS_6                            2                              5
  CLUS_7                            0                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(16Q23.3) MUTATED        8      4      4      1
  DEL PEAK 16(16Q23.3) WILD-TYPE     10     24     12     11
D18V8, multiclass
        clus
vv       DEL PEAK 16(16Q23.3) MUTATED DEL PEAK 16(16Q23.3) WILD-TYPE
  CLUS_1                            8                             10
  CLUS_2                            4                             24
  CLUS_3                            4                             12
  CLUS_4                            1                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 17(16Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(16Q24.3) MUTATED        4      5      2      3      3      0
  DEL PEAK 17(16Q24.3) WILD-TYPE     18      2      8     28      3      4
D19V1, multiclass
        clus
vv       DEL PEAK 17(16Q24.3) MUTATED DEL PEAK 17(16Q24.3) WILD-TYPE
  CLUS_1                            4                             18
  CLUS_2                            5                              2
  CLUS_3                            2                              8
  CLUS_4                            3                             28
  CLUS_5                            3                              3
  CLUS_6                            0                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(16Q24.3) MUTATED       12      0      3      2
  DEL PEAK 17(16Q24.3) WILD-TYPE     16     14     11     22
D19V2, multiclass
        clus
vv       DEL PEAK 17(16Q24.3) MUTATED DEL PEAK 17(16Q24.3) WILD-TYPE
  CLUS_1                           12                             16
  CLUS_2                            0                             14
  CLUS_3                            3                             11
  CLUS_4                            2                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(16Q24.3) MUTATED        7      2      4      4
  DEL PEAK 17(16Q24.3) WILD-TYPE     11     13     28     11
D19V3, multiclass
        clus
vv       DEL PEAK 17(16Q24.3) MUTATED DEL PEAK 17(16Q24.3) WILD-TYPE
  CLUS_1                            7                             11
  CLUS_2                            2                             13
  CLUS_3                            4                             28
  CLUS_4                            4                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q24.3) MUTATED       12      4      1
  DEL PEAK 17(16Q24.3) WILD-TYPE     17     29     17
D19V4, multiclass
        clus
vv       DEL PEAK 17(16Q24.3) MUTATED DEL PEAK 17(16Q24.3) WILD-TYPE
  CLUS_1                           12                             17
  CLUS_2                            4                             29
  CLUS_3                            1                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(16Q24.3) MUTATED        3      1      0      4      9      0
  DEL PEAK 17(16Q24.3) WILD-TYPE      5      7     11     21     14      5
D19V5, multiclass
        clus
vv       DEL PEAK 17(16Q24.3) MUTATED DEL PEAK 17(16Q24.3) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                            1                              7
  CLUS_3                            0                             11
  CLUS_4                            4                             21
  CLUS_5                            9                             14
  CLUS_6                            0                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(16Q24.3) MUTATED        6      0      4      7
  DEL PEAK 17(16Q24.3) WILD-TYPE     11     13     24     15
D19V6, multiclass
        clus
vv       DEL PEAK 17(16Q24.3) MUTATED DEL PEAK 17(16Q24.3) WILD-TYPE
  CLUS_1                            6                             11
  CLUS_2                            0                             13
  CLUS_3                            4                             24
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(16Q24.3) MUTATED        9      2      2      1      1      2
  DEL PEAK 17(16Q24.3) WILD-TYPE     11      5     15      8      7      5
                                vv
clus                             CLUS_7
  DEL PEAK 17(16Q24.3) MUTATED        0
  DEL PEAK 17(16Q24.3) WILD-TYPE      6
D19V7, multiclass
        clus
vv       DEL PEAK 17(16Q24.3) MUTATED DEL PEAK 17(16Q24.3) WILD-TYPE
  CLUS_1                            9                             11
  CLUS_2                            2                              5
  CLUS_3                            2                             15
  CLUS_4                            1                              8
  CLUS_5                            1                              7
  CLUS_6                            2                              5
  CLUS_7                            0                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(16Q24.3) MUTATED        9      4      4      0
  DEL PEAK 17(16Q24.3) WILD-TYPE      9     24     12     12
D19V8, multiclass
        clus
vv       DEL PEAK 17(16Q24.3) MUTATED DEL PEAK 17(16Q24.3) WILD-TYPE
  CLUS_1                            9                              9
  CLUS_2                            4                             24
  CLUS_3                            4                             12
  CLUS_4                            0                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 18(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(17Q12) MUTATED        0      0      0      3      0      0
  DEL PEAK 18(17Q12) WILD-TYPE     22      7     10     28      6      4
D20V1, multiclass
        clus
vv       DEL PEAK 18(17Q12) MUTATED DEL PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          0                           22
  CLUS_2                          0                            7
  CLUS_3                          0                           10
  CLUS_4                          3                           28
  CLUS_5                          0                            6
  CLUS_6                          0                            4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(17Q12) MUTATED        0      0      0      3
  DEL PEAK 18(17Q12) WILD-TYPE     28     14     14     21
D20V2, multiclass
        clus
vv       DEL PEAK 18(17Q12) MUTATED DEL PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          0                           28
  CLUS_2                          0                           14
  CLUS_3                          0                           14
  CLUS_4                          3                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(17Q12) MUTATED        0      2      1      0
  DEL PEAK 18(17Q12) WILD-TYPE     18     13     31     15
D20V3, multiclass
        clus
vv       DEL PEAK 18(17Q12) MUTATED DEL PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          0                           18
  CLUS_2                          2                           13
  CLUS_3                          1                           31
  CLUS_4                          0                           15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(17Q12) MUTATED        0      1      2
  DEL PEAK 18(17Q12) WILD-TYPE     29     32     16
D20V4, multiclass
        clus
vv       DEL PEAK 18(17Q12) MUTATED DEL PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          0                           29
  CLUS_2                          1                           32
  CLUS_3                          2                           16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(17Q12) MUTATED        0      0      0      2      0      1
  DEL PEAK 18(17Q12) WILD-TYPE      8      8     11     23     23      4
D20V5, multiclass
        clus
vv       DEL PEAK 18(17Q12) MUTATED DEL PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          0                            8
  CLUS_2                          0                            8
  CLUS_3                          0                           11
  CLUS_4                          2                           23
  CLUS_5                          0                           23
  CLUS_6                          1                            4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(17Q12) MUTATED        0      1      2      0
  DEL PEAK 18(17Q12) WILD-TYPE     17     12     26     22
D20V6, multiclass
        clus
vv       DEL PEAK 18(17Q12) MUTATED DEL PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          0                           17
  CLUS_2                          1                           12
  CLUS_3                          2                           26
  CLUS_4                          0                           22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 18(17Q12) MUTATED        0      1      0      0      0      2      0
  DEL PEAK 18(17Q12) WILD-TYPE     20      6     17      9      8      5      6
D20V7, multiclass
        clus
vv       DEL PEAK 18(17Q12) MUTATED DEL PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          0                           20
  CLUS_2                          1                            6
  CLUS_3                          0                           17
  CLUS_4                          0                            9
  CLUS_5                          0                            8
  CLUS_6                          2                            5
  CLUS_7                          0                            6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(17Q12) MUTATED        0      2      0      1
  DEL PEAK 18(17Q12) WILD-TYPE     18     26     16     11
D20V8, multiclass
        clus
vv       DEL PEAK 18(17Q12) MUTATED DEL PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          0                           18
  CLUS_2                          2                           26
  CLUS_3                          0                           16
  CLUS_4                          1                           11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
