GS SIZE SOURCE ES NES NOM p-val FDR q-val FWER p-val Tag % Gene % Signal FDR (median) glob.p.val KEGG_RIBOSOME 85 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_RIBOSOME 0.56978 1.6137 0.07677 0.16514 0.904 0.8 0.326 0.541 0.098148 0.014 KEGG_SPLICEOSOME 114 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_SPLICEOSOME 0.34734 1.5319 0.116 0.21726 0.961 0.544 0.344 0.359 0.14159 0.016 KEGG_PROTEASOME 44 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_PROTEASOME 0.56408 1.9337 0.008333 0.18261 0.255 0.773 0.357 0.498 0 0.041 KEGG_BASE_EXCISION_REPAIR 33 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_BASE_EXCISION_REPAIR 0.4732 1.6644 0.04665 0.13334 0.845 0.545 0.297 0.384 0.071525 0.01 KEGG_CELL_CYCLE 118 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_CELL_CYCLE 0.52575 1.5877 0.078 0.1702 0.924 0.415 0.194 0.337 0.10348 0.011 PID_MYC_ACTIVPATHWAY 78 http://www.broadinstitute.org/gsea/msigdb/cards/PID_MYC_ACTIVPATHWAY 0.45461 1.7219 0.02653 0.10413 0.733 0.449 0.218 0.352 0.046831 0.008 PID_ILK_PATHWAY 45 http://www.broadinstitute.org/gsea/msigdb/cards/PID_ILK_PATHWAY 0.37077 1.513 0.09608 0.22847 0.97 0.244 0.184 0.2 0.15482 0.015 PID_ATM_PATHWAY 34 http://www.broadinstitute.org/gsea/msigdb/cards/PID_ATM_PATHWAY 0.50513 1.5877 0.08064 0.16704 0.924 0.412 0.199 0.33 0.10153 0.01 PID_MYC_PATHWAY 25 http://www.broadinstitute.org/gsea/msigdb/cards/PID_MYC_PATHWAY 0.41677 1.5899 0.0593 0.17754 0.921 0.52 0.307 0.361 0.1079 0.015 PID_FOXM1PATHWAY 38 http://www.broadinstitute.org/gsea/msigdb/cards/PID_FOXM1PATHWAY 0.73428 1.6457 0.008032 0.1417 0.869 0.474 0.0884 0.433 0.077497 0.012 PID_AURORA_A_PATHWAY 31 http://www.broadinstitute.org/gsea/msigdb/cards/PID_AURORA_A_PATHWAY 0.59743 1.651 0.0498 0.13978 0.862 0.29 0.0833 0.267 0.074464 0.012 REACTOME_TRANSLATION 146 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TRANSLATION 0.46087 1.7285 0.07143 0.10867 0.716 0.651 0.317 0.448 0.045862 0.01 REACTOME_FORMATION_OF_THE_TERNARY_COMPLEX_AND_SUBSEQUENTLY_THE_43S_COMPLEX 49 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_FORMATION_OF_THE_TERNARY_COMPLEX_AND_SUBSEQUENTLY_THE_43S_COMPLEX 0.58455 1.7839 0.03074 0.089222 0.58 0.694 0.309 0.48 0.031437 0.009 REACTOME_CROSS_PRESENTATION_OF_SOLUBLE_EXOGENOUS_ANTIGENS_ENDOSOMES 47 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CROSS_PRESENTATION_OF_SOLUBLE_EXOGENOUS_ANTIGENS_ENDOSOMES 0.50801 1.6936 0.03125 0.11565 0.8 0.681 0.357 0.439 0.055468 0.009 REACTOME_CELL_CYCLE 376 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CELL_CYCLE 0.49399 1.5217 0.1255 0.22757 0.965 0.388 0.201 0.317 0.14858 0.016 REACTOME_ORC1_REMOVAL_FROM_CHROMATIN 59 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ORC1_REMOVAL_FROM_CHROMATIN 0.55367 1.9093 0.004024 0.13824 0.299 0.508 0.243 0.386 0 0.035 REACTOME_SRP_DEPENDENT_COTRANSLATIONAL_PROTEIN_TARGETING_TO_MEMBRANE 109 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_SRP_DEPENDENT_COTRANSLATIONAL_PROTEIN_TARGETING_TO_MEMBRANE 0.4858 1.5892 0.1014 0.17143 0.921 0.716 0.322 0.488 0.10413 0.012 REACTOME_P53_INDEPENDENT_G1_S_DNA_DAMAGE_CHECKPOINT 48 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_P53_INDEPENDENT_G1_S_DNA_DAMAGE_CHECKPOINT 0.54762 1.8859 0.01375 0.10741 0.347 0.729 0.357 0.47 0 0.022 REACTOME_CDK_MEDIATED_PHOSPHORYLATION_AND_REMOVAL_OF_CDC6 46 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CDK_MEDIATED_PHOSPHORYLATION_AND_REMOVAL_OF_CDC6 0.53294 1.8456 0.0198 0.088716 0.453 0.739 0.357 0.476 0 0.01 REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA 126 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA 0.4114 1.8159 0.02439 0.087772 0.513 0.563 0.34 0.375 0.028177 0.012 REACTOME_ACTIVATION_OF_THE_MRNA_UPON_BINDING_OF_THE_CAP_BINDING_COMPLEX_AND_EIFS_AND_SUBSEQUENT_BINDING_TO_43S 57 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ACTIVATION_OF_THE_MRNA_UPON_BINDING_OF_THE_CAP_BINDING_COMPLEX_AND_EIFS_AND_SUBSEQUENT_BINDING_TO_43S 0.54529 1.7517 0.03527 0.10137 0.658 0.632 0.309 0.438 0.041602 0.01 REACTOME_REGULATION_OF_ORNITHINE_DECARBOXYLASE_ODC 48 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_REGULATION_OF_ORNITHINE_DECARBOXYLASE_ODC 0.51248 1.7552 0.03593 0.10184 0.646 0.688 0.357 0.443 0.04165 0.01 REACTOME_RNA_POL_III_TRANSCRIPTION 33 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RNA_POL_III_TRANSCRIPTION 0.39344 1.6929 0.02464 0.11319 0.802 0.576 0.296 0.406 0.054259 0.008 REACTOME_CELL_CYCLE_MITOTIC 297 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CELL_CYCLE_MITOTIC 0.52833 1.5897 0.1032 0.17417 0.921 0.397 0.207 0.32 0.10589 0.014 REACTOME_CELL_CYCLE_CHECKPOINTS 105 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CELL_CYCLE_CHECKPOINTS 0.59884 1.8942 0 0.11358 0.333 0.524 0.243 0.399 0 0.023 REACTOME_CYCLIN_E_ASSOCIATED_EVENTS_DURING_G1_S_TRANSITION_ 62 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CYCLIN_E_ASSOCIATED_EVENTS_DURING_G1_S_TRANSITION_ 0.47702 1.712 0.03386 0.10583 0.766 0.419 0.243 0.319 0.047817 0.008 REACTOME_P53_DEPENDENT_G1_DNA_DAMAGE_RESPONSE 53 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_P53_DEPENDENT_G1_DNA_DAMAGE_RESPONSE 0.51686 2.0165 0.009823 0.26763 0.127 0.717 0.358 0.461 0 0.068 REACTOME_MRNA_PROCESSING 144 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MRNA_PROCESSING 0.35965 1.7273 0.05544 0.10619 0.718 0.528 0.34 0.351 0.04643 0.01 REACTOME_M_G1_TRANSITION 72 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_M_G1_TRANSITION 0.58302 1.7762 0.01408 0.091133 0.598 0.556 0.243 0.422 0.033359 0.009 REACTOME_MRNA_SPLICING 97 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MRNA_SPLICING 0.45019 1.7907 0.02222 0.088104 0.569 0.598 0.344 0.395 0.03019 0.009 REACTOME_MRNA_SPLICING_MINOR_PATHWAY 38 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MRNA_SPLICING_MINOR_PATHWAY 0.53301 1.8652 0.005894 0.10528 0.406 0.526 0.288 0.375 0 0.019 REACTOME_3_UTR_MEDIATED_TRANSLATIONAL_REGULATION 105 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_3_UTR_MEDIATED_TRANSLATIONAL_REGULATION 0.49005 1.5867 0.1096 0.16511 0.924 0.714 0.322 0.487 0.10137 0.009 REACTOME_G1_S_TRANSITION 100 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_G1_S_TRANSITION 0.55633 1.6639 0.05634 0.13056 0.846 0.51 0.243 0.388 0.069737 0.009 REACTOME_CDT1_ASSOCIATION_WITH_THE_CDC6_ORC_ORIGIN_COMPLEX 48 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CDT1_ASSOCIATION_WITH_THE_CDC6_ORC_ORIGIN_COMPLEX 0.55027 1.8621 0.01202 0.098216 0.411 0.75 0.357 0.483 0 0.017 REACTOME_SYNTHESIS_OF_DNA 84 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_SYNTHESIS_OF_DNA 0.58819 1.8124 0.0122 0.085149 0.527 0.536 0.243 0.408 0.02832 0.011 REACTOME_AUTODEGRADATION_OF_THE_E3_UBIQUITIN_LIGASE_COP1 47 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_AUTODEGRADATION_OF_THE_E3_UBIQUITIN_LIGASE_COP1 0.52078 1.8426 0.02182 0.085189 0.465 0.702 0.357 0.453 0 0.011 REACTOME_METABOLISM_OF_MRNA 208 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_METABOLISM_OF_MRNA 0.39768 1.8186 0.04723 0.09652 0.509 0.519 0.29 0.373 0.029263 0.013 REACTOME_DEADENYLATION_DEPENDENT_MRNA_DECAY 44 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_DEADENYLATION_DEPENDENT_MRNA_DECAY 0.3902 1.7256 0.02414 0.10445 0.726 0.409 0.249 0.308 0.046841 0.008 REACTOME_METABOLISM_OF_RNA 252 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_METABOLISM_OF_RNA 0.38436 1.8796 0.02911 0.10127 0.363 0.5 0.29 0.36 0 0.021 REACTOME_MITOTIC_G1_G1_S_PHASES 124 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MITOTIC_G1_G1_S_PHASES 0.50959 1.6149 0.09307 0.16748 0.904 0.395 0.201 0.318 0.098733 0.014 REACTOME_REGULATION_OF_MITOTIC_CELL_CYCLE 77 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_REGULATION_OF_MITOTIC_CELL_CYCLE 0.5639 1.8184 0.007984 0.091117 0.51 0.481 0.243 0.365 0.028173 0.013 REACTOME_MITOTIC_M_M_G1_PHASES 161 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MITOTIC_M_M_G1_PHASES 0.5946 1.6156 0.07229 0.17039 0.903 0.534 0.243 0.408 0.10089 0.014 REACTOME_DNA_REPAIR 105 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_DNA_REPAIR 0.40883 1.5465 0.1136 0.20721 0.952 0.448 0.268 0.33 0.13406 0.014 REACTOME_ASSEMBLY_OF_THE_PRE_REPLICATIVE_COMPLEX 57 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ASSEMBLY_OF_THE_PRE_REPLICATIVE_COMPLEX 0.59736 1.9295 0.003906 0.1421 0.26 0.561 0.243 0.427 0 0.038 REACTOME_REGULATION_OF_MRNA_STABILITY_BY_PROTEINS_THAT_BIND_AU_RICH_ELEMENTS 81 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_REGULATION_OF_MRNA_STABILITY_BY_PROTEINS_THAT_BIND_AU_RICH_ELEMENTS 0.38128 1.8459 0.02549 0.095357 0.451 0.593 0.357 0.383 0 0.014 REACTOME_DESTABILIZATION_OF_MRNA_BY_AUF1_HNRNP_D0 50 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_DESTABILIZATION_OF_MRNA_BY_AUF1_HNRNP_D0 0.47158 1.7091 0.0377 0.10545 0.773 0.68 0.357 0.438 0.0482 0.007 REACTOME_DNA_REPLICATION 181 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_DNA_REPLICATION 0.59484 1.6098 0.0749 0.16553 0.908 0.536 0.243 0.41 0.098087 0.014 REACTOME_RNA_POL_III_TRANSCRIPTION_INITIATION_FROM_TYPE_3_PROMOTER 26 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RNA_POL_III_TRANSCRIPTION_INITIATION_FROM_TYPE_3_PROMOTER 0.40491 1.6741 0.0395 0.12728 0.825 0.538 0.258 0.4 0.064646 0.009 REACTOME_INFLUENZA_LIFE_CYCLE 135 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_INFLUENZA_LIFE_CYCLE 0.45233 1.7135 0.06855 0.10783 0.761 0.681 0.337 0.456 0.047076 0.008 REACTOME_INFLUENZA_VIRAL_RNA_TRANSCRIPTION_AND_REPLICATION 101 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_INFLUENZA_VIRAL_RNA_TRANSCRIPTION_AND_REPLICATION 0.50024 1.6052 0.09524 0.16686 0.912 0.653 0.283 0.471 0.099412 0.013 REACTOME_HIV_LIFE_CYCLE 114 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_HIV_LIFE_CYCLE 0.30357 1.5996 0.0701 0.16923 0.916 0.518 0.338 0.345 0.10161 0.015 REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE 101 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE 0.30787 1.5153 0.1006 0.233 0.968 0.515 0.338 0.343 0.15708 0.015 REACTOME_APC_C_CDH1_MEDIATED_DEGRADATION_OF_CDC20_AND_OTHER_APC_C_CDH1_TARGETED_PROTEINS_IN_LATE_MITOSIS_EARLY_G1 64 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_APC_C_CDH1_MEDIATED_DEGRADATION_OF_CDC20_AND_OTHER_APC_C_CDH1_TARGETED_PROTEINS_IN_LATE_MITOSIS_EARLY_G1 0.56174 1.935 0.003914 0.27102 0.253 0.469 0.243 0.356 0 0.065 REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS 29 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS 0.68195 1.5434 0.066 0.20765 0.953 0.586 0.186 0.478 0.13399 0.015 REACTOME_APC_C_CDC20_MEDIATED_DEGRADATION_OF_MITOTIC_PROTEINS 65 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_APC_C_CDC20_MEDIATED_DEGRADATION_OF_MITOTIC_PROTEINS 0.55228 1.9068 0.003922 0.11694 0.303 0.477 0.243 0.363 0 0.025 REACTOME_AUTODEGRADATION_OF_CDH1_BY_CDH1_APC_C 56 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_AUTODEGRADATION_OF_CDH1_BY_CDH1_APC_C 0.45192 1.7444 0.0336 0.10377 0.683 0.625 0.357 0.403 0.043144 0.01 REACTOME_SCF_BETA_TRCP_MEDIATED_DEGRADATION_OF_EMI1 49 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_SCF_BETA_TRCP_MEDIATED_DEGRADATION_OF_EMI1 0.4925 1.7388 0.03307 0.10444 0.693 0.694 0.357 0.447 0.043816 0.009 REACTOME_NONSENSE_MEDIATED_DECAY_ENHANCED_BY_THE_EXON_JUNCTION_COMPLEX 104 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_NONSENSE_MEDIATED_DECAY_ENHANCED_BY_THE_EXON_JUNCTION_COMPLEX 0.4515 1.5131 0.1463 0.23213 0.97 0.692 0.322 0.472 0.15736 0.015 REACTOME_G2_M_CHECKPOINTS 35 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_G2_M_CHECKPOINTS 0.70801 1.5842 0.04554 0.16481 0.927 0.629 0.186 0.512 0.10357 0.009 REACTOME_S_PHASE 100 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_S_PHASE 0.57822 1.7976 0.0202 0.087186 0.557 0.53 0.243 0.404 0.028778 0.01 REACTOME_SCFSKP2_MEDIATED_DEGRADATION_OF_P27_P21 53 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_SCFSKP2_MEDIATED_DEGRADATION_OF_P27_P21 0.49296 1.8054 0.0217 0.085538 0.546 0.698 0.357 0.45 0.028556 0.011 REACTOME_VIF_MEDIATED_DEGRADATION_OF_APOBEC3G 49 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_VIF_MEDIATED_DEGRADATION_OF_APOBEC3G 0.51505 1.8603 0.01897 0.09156 0.415 0.714 0.357 0.46 0 0.015