This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and selected clinical features.
Testing the association between copy number variation 82 arm-level events and 12 clinical features across 1079 patients, 179 significant findings detected with Q value < 0.25.
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1p gain cnv correlated to 'PATHOLOGY_T_STAGE' and 'HISTOLOGICAL_TYPE'.
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1q gain cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'HISTOLOGICAL_TYPE'.
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2p gain cnv correlated to 'HISTOLOGICAL_TYPE', 'RACE', and 'ETHNICITY'.
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2q gain cnv correlated to 'HISTOLOGICAL_TYPE' and 'RACE'.
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3p gain cnv correlated to 'HISTOLOGICAL_TYPE'.
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3q gain cnv correlated to 'HISTOLOGICAL_TYPE', 'NUMBER_OF_LYMPH_NODES', and 'RACE'.
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4p gain cnv correlated to 'HISTOLOGICAL_TYPE'.
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4q gain cnv correlated to 'HISTOLOGICAL_TYPE'.
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5p gain cnv correlated to 'Time to Death', 'PATHOLOGY_N_STAGE', and 'HISTOLOGICAL_TYPE'.
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5q gain cnv correlated to 'YEARS_TO_BIRTH', 'HISTOLOGICAL_TYPE', and 'RACE'.
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6p gain cnv correlated to 'HISTOLOGICAL_TYPE' and 'RACE'.
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6q gain cnv correlated to 'HISTOLOGICAL_TYPE' and 'NUMBER_OF_LYMPH_NODES'.
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7p gain cnv correlated to 'HISTOLOGICAL_TYPE'.
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7q gain cnv correlated to 'HISTOLOGICAL_TYPE' and 'RACE'.
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8q gain cnv correlated to 'HISTOLOGICAL_TYPE' and 'RACE'.
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10p gain cnv correlated to 'HISTOLOGICAL_TYPE' and 'RACE'.
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10q gain cnv correlated to 'HISTOLOGICAL_TYPE'.
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11p gain cnv correlated to 'NUMBER_OF_LYMPH_NODES'.
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11q gain cnv correlated to 'HISTOLOGICAL_TYPE'.
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12p gain cnv correlated to 'HISTOLOGICAL_TYPE'.
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12q gain cnv correlated to 'PATHOLOGY_N_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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13q gain cnv correlated to 'HISTOLOGICAL_TYPE'.
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14q gain cnv correlated to 'HISTOLOGICAL_TYPE'.
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15q gain cnv correlated to 'HISTOLOGICAL_TYPE'.
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16p gain cnv correlated to 'HISTOLOGICAL_TYPE'.
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16q gain cnv correlated to 'HISTOLOGICAL_TYPE'.
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17p gain cnv correlated to 'GENDER' and 'RADIATION_THERAPY'.
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17q gain cnv correlated to 'GENDER'.
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18p gain cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'NUMBER_OF_LYMPH_NODES', and 'RACE'.
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18q gain cnv correlated to 'HISTOLOGICAL_TYPE' and 'RACE'.
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19p gain cnv correlated to 'PATHOLOGY_M_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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19q gain cnv correlated to 'NUMBER_OF_LYMPH_NODES'.
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20p gain cnv correlated to 'PATHOLOGY_N_STAGE', 'GENDER', and 'HISTOLOGICAL_TYPE'.
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20q gain cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'HISTOLOGICAL_TYPE'.
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21q gain cnv correlated to 'Time to Death', 'HISTOLOGICAL_TYPE', and 'RACE'.
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22q gain cnv correlated to 'HISTOLOGICAL_TYPE' and 'RACE'.
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xp gain cnv correlated to 'HISTOLOGICAL_TYPE' and 'RACE'.
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xq gain cnv correlated to 'HISTOLOGICAL_TYPE'.
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1p loss cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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1q loss cnv correlated to 'PATHOLOGY_N_STAGE'.
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2p loss cnv correlated to 'PATHOLOGY_M_STAGE'.
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3p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', 'RACE', and 'ETHNICITY'.
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3q loss cnv correlated to 'PATHOLOGY_T_STAGE' and 'ETHNICITY'.
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4p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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4q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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5p loss cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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5q loss cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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6q loss cnv correlated to 'YEARS_TO_BIRTH' and 'RADIATION_THERAPY'.
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7p loss cnv correlated to 'PATHOLOGY_N_STAGE' and 'HISTOLOGICAL_TYPE'.
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7q loss cnv correlated to 'HISTOLOGICAL_TYPE'.
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8p loss cnv correlated to 'HISTOLOGICAL_TYPE' and 'RACE'.
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9p loss cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'HISTOLOGICAL_TYPE'.
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9q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'GENDER', and 'HISTOLOGICAL_TYPE'.
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10p loss cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', and 'HISTOLOGICAL_TYPE'.
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10q loss cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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11p loss cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', 'RACE', and 'ETHNICITY'.
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11q loss cnv correlated to 'RACE'.
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12p loss cnv correlated to 'PATHOLOGY_T_STAGE' and 'HISTOLOGICAL_TYPE'.
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12q loss cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'RADIATION_THERAPY', 'HISTOLOGICAL_TYPE', and 'RACE'.
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13q loss cnv correlated to 'HISTOLOGICAL_TYPE'.
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14q loss cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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15q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'HISTOLOGICAL_TYPE'.
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16p loss cnv correlated to 'NUMBER_OF_LYMPH_NODES'.
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16q loss cnv correlated to 'YEARS_TO_BIRTH' and 'HISTOLOGICAL_TYPE'.
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17p loss cnv correlated to 'PATHOLOGY_T_STAGE' and 'HISTOLOGICAL_TYPE'.
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17q loss cnv correlated to 'GENDER', 'HISTOLOGICAL_TYPE', and 'RACE'.
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18p loss cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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18q loss cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', and 'HISTOLOGICAL_TYPE'.
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19p loss cnv correlated to 'YEARS_TO_BIRTH', 'HISTOLOGICAL_TYPE', and 'RACE'.
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19q loss cnv correlated to 'HISTOLOGICAL_TYPE' and 'RACE'.
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20p loss cnv correlated to 'PATHOLOGY_M_STAGE'.
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20q loss cnv correlated to 'YEARS_TO_BIRTH', 'HISTOLOGICAL_TYPE', and 'RACE'.
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21q loss cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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22q loss cnv correlated to 'RADIATION_THERAPY' and 'HISTOLOGICAL_TYPE'.
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xp loss cnv correlated to 'YEARS_TO_BIRTH', 'HISTOLOGICAL_TYPE', and 'RACE'.
Clinical Features |
Time to Death |
YEARS TO BIRTH |
PATHOLOGIC STAGE |
PATHOLOGY T STAGE |
PATHOLOGY N STAGE |
PATHOLOGY M STAGE |
GENDER |
RADIATION THERAPY |
HISTOLOGICAL TYPE |
NUMBER OF LYMPH NODES |
RACE | ETHNICITY | ||
nCNV (%) | nWild-Type | logrank test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | |
1p loss | 226 (21%) | 853 |
0.00534 (0.064) |
0.000666 (0.0146) |
0.0105 (0.0977) |
0.00949 (0.0915) |
0.0138 (0.116) |
0.289 (0.66) |
1 (1.00) |
0.577 (0.857) |
0.203 (0.575) |
0.00292 (0.0422) |
0.833 (0.984) |
1 (1.00) |
18p loss | 320 (30%) | 759 |
1.99e-05 (0.000934) |
0.00104 (0.0202) |
0.0341 (0.208) |
0.00276 (0.0405) |
0.381 (0.749) |
1 (1.00) |
1 (1.00) |
0.778 (0.965) |
0.0023 (0.0359) |
0.171 (0.529) |
0.0455 (0.25) |
1 (1.00) |
11p loss | 270 (25%) | 809 |
0.291 (0.66) |
0.862 (1) |
0.0358 (0.211) |
0.0215 (0.152) |
0.0619 (0.302) |
0.806 (0.979) |
1 (1.00) |
0.163 (0.517) |
0.00393 (0.053) |
0.102 (0.4) |
0.0007 (0.0147) |
0.0363 (0.213) |
12q loss | 136 (13%) | 943 |
0.535 (0.826) |
0.00886 (0.0879) |
0.431 (0.772) |
0.00733 (0.081) |
0.864 (1) |
1 (1.00) |
1 (1.00) |
0.00448 (0.0566) |
6e-05 (0.00236) |
0.223 (0.597) |
0.00353 (0.0489) |
1 (1.00) |
21q loss | 179 (17%) | 900 |
0.795 (0.976) |
0.476 (0.796) |
0.0145 (0.12) |
0.169 (0.527) |
0.02 (0.147) |
0.0378 (0.219) |
0.234 (0.607) |
0.495 (0.808) |
0.0149 (0.122) |
0.166 (0.526) |
0.0216 (0.152) |
0.823 (0.984) |
12q gain | 186 (17%) | 893 |
0.292 (0.661) |
0.0907 (0.378) |
0.509 (0.818) |
0.0822 (0.357) |
0.031 (0.2) |
0.572 (0.857) |
0.0405 (0.231) |
0.552 (0.839) |
0.0212 (0.152) |
0.0183 (0.14) |
0.831 (0.984) |
0.184 (0.549) |
18p gain | 177 (16%) | 902 |
0.574 (0.857) |
0.445 (0.781) |
0.0898 (0.376) |
0.348 (0.73) |
0.0292 (0.189) |
0.776 (0.965) |
0.428 (0.772) |
0.388 (0.75) |
0.00084 (0.0172) |
0.0189 (0.141) |
0.00018 (0.00521) |
0.184 (0.549) |
3p loss | 188 (17%) | 891 |
0.52 (0.824) |
0.0696 (0.326) |
0.616 (0.877) |
0.00129 (0.0226) |
0.983 (1.00) |
1 (1.00) |
0.24 (0.614) |
0.0513 (0.271) |
0.0216 (0.152) |
0.435 (0.776) |
0.0247 (0.167) |
0.0319 (0.202) |
5p loss | 142 (13%) | 937 |
0.474 (0.796) |
0.0012 (0.0219) |
0.611 (0.875) |
0.0342 (0.208) |
0.952 (1.00) |
0.756 (0.954) |
1 (1.00) |
0.776 (0.965) |
1e-05 (0.000492) |
0.375 (0.749) |
0.00878 (0.0879) |
0.346 (0.73) |
5q loss | 228 (21%) | 851 |
0.9 (1.00) |
6.56e-05 (0.00248) |
0.214 (0.586) |
0.00406 (0.0533) |
0.509 (0.818) |
1 (1.00) |
0.478 (0.796) |
0.694 (0.924) |
1e-05 (0.000492) |
0.0862 (0.368) |
1e-05 (0.000492) |
0.693 (0.924) |
9p loss | 313 (29%) | 766 |
0.0607 (0.298) |
0.576 (0.857) |
0.00256 (0.0388) |
0.00041 (0.0103) |
0.00492 (0.0598) |
0.0551 (0.279) |
0.0475 (0.255) |
0.943 (1.00) |
1e-05 (0.000492) |
0.101 (0.397) |
0.249 (0.621) |
0.471 (0.796) |
10q loss | 231 (21%) | 848 |
0.0181 (0.139) |
0.46 (0.79) |
0.218 (0.592) |
0.0048 (0.059) |
0.135 (0.469) |
0.798 (0.976) |
0.479 (0.796) |
1 (1.00) |
0.00027 (0.00718) |
0.405 (0.759) |
0.045 (0.249) |
0.108 (0.416) |
14q loss | 269 (25%) | 810 |
0.0279 (0.184) |
0.682 (0.922) |
0.888 (1.00) |
0.0219 (0.153) |
0.181 (0.547) |
0.454 (0.787) |
0.313 (0.694) |
0.416 (0.766) |
1e-05 (0.000492) |
0.0857 (0.368) |
7e-05 (0.00255) |
0.448 (0.783) |
18q loss | 321 (30%) | 758 |
0.0117 (0.103) |
0.00874 (0.0879) |
0.0549 (0.279) |
0.0189 (0.141) |
0.112 (0.422) |
1 (1.00) |
1 (1.00) |
0.204 (0.575) |
0.00117 (0.0217) |
0.386 (0.749) |
0.223 (0.597) |
0.721 (0.944) |
1q gain | 707 (66%) | 372 |
0.251 (0.626) |
0.621 (0.879) |
0.0166 (0.132) |
0.0007 (0.0147) |
0.376 (0.749) |
0.366 (0.742) |
0.56 (0.847) |
0.636 (0.888) |
0.00173 (0.0284) |
0.615 (0.877) |
0.0875 (0.369) |
0.0853 (0.368) |
2p gain | 122 (11%) | 957 |
0.191 (0.556) |
0.355 (0.737) |
0.962 (1.00) |
0.726 (0.944) |
0.862 (1) |
1 (1.00) |
0.38 (0.749) |
0.41 (0.759) |
1e-05 (0.000492) |
0.729 (0.945) |
0.00016 (0.00492) |
0.0168 (0.133) |
3q gain | 213 (20%) | 866 |
0.513 (0.819) |
0.602 (0.872) |
0.42 (0.767) |
0.0471 (0.255) |
0.275 (0.656) |
0.793 (0.976) |
0.478 (0.796) |
0.525 (0.824) |
1e-05 (0.000492) |
0.0233 (0.16) |
0.0112 (0.103) |
0.679 (0.922) |
5p gain | 315 (29%) | 764 |
0.0245 (0.166) |
0.182 (0.547) |
0.902 (1.00) |
0.493 (0.806) |
0.0142 (0.119) |
1 (1.00) |
0.348 (0.73) |
0.29 (0.66) |
0.0231 (0.16) |
0.709 (0.934) |
0.124 (0.45) |
1 (1.00) |
5q gain | 211 (20%) | 868 |
0.535 (0.826) |
0.0102 (0.0954) |
0.869 (1.00) |
0.17 (0.529) |
0.232 (0.607) |
0.0992 (0.394) |
1 (1.00) |
0.224 (0.597) |
0.0367 (0.213) |
0.78 (0.967) |
0.00086 (0.0173) |
1 (1.00) |
20p gain | 410 (38%) | 669 |
0.315 (0.697) |
0.298 (0.67) |
0.464 (0.792) |
0.103 (0.403) |
0.00819 (0.0858) |
0.662 (0.914) |
0.0132 (0.112) |
0.791 (0.976) |
1e-05 (0.000492) |
0.485 (0.799) |
0.877 (1.00) |
0.403 (0.759) |
20q gain | 450 (42%) | 629 |
0.552 (0.839) |
0.725 (0.944) |
0.805 (0.979) |
0.00371 (0.0507) |
0.0326 (0.203) |
1 (1.00) |
0.138 (0.475) |
0.746 (0.952) |
1e-05 (0.000492) |
0.389 (0.75) |
0.564 (0.848) |
0.187 (0.552) |
21q gain | 198 (18%) | 881 |
0.028 (0.184) |
0.0792 (0.348) |
0.683 (0.922) |
0.587 (0.861) |
0.739 (0.95) |
1 (1.00) |
1 (1.00) |
0.0992 (0.394) |
1e-05 (0.000492) |
0.643 (0.892) |
0.0258 (0.173) |
0.393 (0.75) |
4p loss | 353 (33%) | 726 |
0.479 (0.796) |
0.204 (0.575) |
0.395 (0.75) |
0.0129 (0.111) |
0.527 (0.824) |
1 (1.00) |
1 (1.00) |
0.945 (1.00) |
1e-05 (0.000492) |
0.87 (1.00) |
0.00296 (0.0422) |
0.603 (0.872) |
4q loss | 311 (29%) | 768 |
0.667 (0.915) |
0.922 (1.00) |
0.749 (0.953) |
0.0323 (0.203) |
0.865 (1) |
0.814 (0.984) |
1 (1.00) |
0.831 (0.984) |
1e-05 (0.000492) |
0.889 (1.00) |
0.00893 (0.0879) |
0.856 (0.999) |
9q loss | 280 (26%) | 799 |
0.538 (0.826) |
0.702 (0.928) |
0.145 (0.49) |
0.00422 (0.0546) |
0.111 (0.42) |
0.326 (0.709) |
0.017 (0.133) |
0.418 (0.766) |
1e-05 (0.000492) |
0.992 (1.00) |
0.0711 (0.329) |
0.451 (0.783) |
10p loss | 175 (16%) | 904 |
0.0128 (0.11) |
0.95 (1.00) |
0.0659 (0.316) |
0.0048 (0.059) |
0.202 (0.575) |
0.783 (0.969) |
0.233 (0.607) |
0.93 (1.00) |
0.00059 (0.0135) |
0.241 (0.614) |
0.584 (0.861) |
0.498 (0.81) |
15q loss | 317 (29%) | 762 |
0.244 (0.617) |
0.81 (0.981) |
0.23 (0.607) |
0.00268 (0.04) |
0.0413 (0.234) |
0.817 (0.984) |
0.755 (0.954) |
0.325 (0.709) |
4e-05 (0.00164) |
0.0968 (0.392) |
0.356 (0.737) |
0.473 (0.796) |
17q loss | 272 (25%) | 807 |
0.6 (0.872) |
0.288 (0.66) |
0.958 (1.00) |
0.773 (0.965) |
0.219 (0.592) |
1 (1.00) |
0.0444 (0.247) |
0.824 (0.984) |
0.00014 (0.00459) |
0.13 (0.455) |
0.00841 (0.0862) |
1 (1.00) |
19p loss | 197 (18%) | 882 |
0.228 (0.603) |
0.0092 (0.0896) |
0.759 (0.954) |
0.3 (0.671) |
0.345 (0.73) |
0.159 (0.509) |
0.467 (0.796) |
0.805 (0.979) |
1e-05 (0.000492) |
0.594 (0.869) |
0.00042 (0.0103) |
0.393 (0.75) |
20q loss | 57 (5%) | 1022 |
0.278 (0.656) |
0.00641 (0.0716) |
0.855 (0.999) |
0.231 (0.607) |
0.928 (1.00) |
0.325 (0.709) |
1 (1.00) |
0.776 (0.965) |
0.0347 (0.209) |
0.38 (0.749) |
0.0179 (0.138) |
0.151 (0.501) |
xp loss | 192 (18%) | 887 |
0.399 (0.754) |
0.0062 (0.071) |
0.885 (1.00) |
0.0962 (0.391) |
0.874 (1.00) |
0.278 (0.656) |
0.457 (0.789) |
0.803 (0.979) |
0.0424 (0.239) |
0.457 (0.789) |
0.00835 (0.0862) |
1 (1.00) |
1p gain | 227 (21%) | 852 |
0.339 (0.726) |
0.111 (0.42) |
0.533 (0.826) |
0.00811 (0.0858) |
0.605 (0.872) |
0.283 (0.656) |
0.724 (0.944) |
0.583 (0.861) |
0.00186 (0.03) |
0.483 (0.799) |
0.406 (0.759) |
0.429 (0.772) |
2q gain | 73 (7%) | 1006 |
0.915 (1.00) |
0.735 (0.947) |
0.825 (0.984) |
0.432 (0.772) |
0.965 (1.00) |
0.394 (0.75) |
1 (1.00) |
0.359 (0.74) |
0.00053 (0.0124) |
0.472 (0.796) |
0.00602 (0.0697) |
0.103 (0.404) |
6p gain | 208 (19%) | 871 |
0.247 (0.621) |
0.829 (0.984) |
0.525 (0.824) |
0.0756 (0.336) |
0.288 (0.66) |
1 (1.00) |
0.48 (0.796) |
0.0736 (0.333) |
1e-05 (0.000492) |
0.188 (0.553) |
0.00991 (0.0938) |
0.529 (0.825) |
6q gain | 149 (14%) | 930 |
0.188 (0.553) |
0.956 (1.00) |
0.599 (0.872) |
0.156 (0.506) |
0.0525 (0.277) |
0.757 (0.954) |
1 (1.00) |
0.641 (0.891) |
1e-05 (0.000492) |
0.0356 (0.211) |
0.171 (0.529) |
0.469 (0.796) |
7q gain | 268 (25%) | 811 |
0.741 (0.951) |
0.973 (1.00) |
0.186 (0.552) |
0.407 (0.759) |
0.439 (0.776) |
0.446 (0.781) |
0.185 (0.552) |
0.557 (0.845) |
0.0189 (0.141) |
0.301 (0.671) |
0.0399 (0.228) |
0.446 (0.781) |
8q gain | 529 (49%) | 550 |
0.412 (0.761) |
0.916 (1.00) |
0.698 (0.927) |
0.329 (0.709) |
0.205 (0.576) |
0.83 (0.984) |
0.256 (0.629) |
0.0722 (0.329) |
1e-05 (0.000492) |
0.852 (0.997) |
0.00638 (0.0716) |
0.0716 (0.329) |
10p gain | 208 (19%) | 871 |
0.971 (1.00) |
0.723 (0.944) |
0.507 (0.817) |
0.152 (0.501) |
0.242 (0.614) |
0.0633 (0.305) |
1 (1.00) |
0.685 (0.922) |
1e-05 (0.000492) |
0.357 (0.738) |
0.00124 (0.0222) |
1 (1.00) |
17p gain | 110 (10%) | 969 |
0.426 (0.772) |
0.952 (1.00) |
0.367 (0.742) |
0.106 (0.411) |
0.234 (0.607) |
0.722 (0.944) |
0.00444 (0.0566) |
0.0157 (0.127) |
0.224 (0.597) |
0.832 (0.984) |
0.0548 (0.279) |
0.789 (0.976) |
18q gain | 154 (14%) | 925 |
0.382 (0.749) |
0.587 (0.861) |
0.363 (0.742) |
0.167 (0.526) |
0.256 (0.629) |
0.761 (0.956) |
0.395 (0.75) |
1 (1.00) |
0.00553 (0.0656) |
0.318 (0.701) |
0.0239 (0.163) |
0.346 (0.73) |
19p gain | 187 (17%) | 892 |
0.478 (0.796) |
0.412 (0.761) |
0.149 (0.497) |
0.365 (0.742) |
0.248 (0.621) |
0.0214 (0.152) |
0.139 (0.477) |
0.499 (0.81) |
0.0911 (0.378) |
0.0354 (0.211) |
0.624 (0.881) |
0.832 (0.984) |
22q gain | 99 (9%) | 980 |
0.634 (0.887) |
0.578 (0.857) |
0.178 (0.544) |
0.0506 (0.269) |
0.428 (0.772) |
0.714 (0.939) |
1 (1.00) |
0.821 (0.984) |
0.00032 (0.00829) |
0.24 (0.614) |
0.0328 (0.203) |
1 (1.00) |
xp gain | 150 (14%) | 929 |
0.897 (1.00) |
0.0532 (0.278) |
0.518 (0.823) |
0.208 (0.581) |
0.669 (0.916) |
0.353 (0.737) |
1 (1.00) |
0.359 (0.74) |
0.00021 (0.0059) |
0.697 (0.927) |
0.0318 (0.202) |
0.467 (0.796) |
3q loss | 105 (10%) | 974 |
0.0991 (0.394) |
0.608 (0.872) |
0.325 (0.709) |
0.00252 (0.0387) |
0.791 (0.976) |
1 (1.00) |
0.62 (0.877) |
0.511 (0.818) |
0.181 (0.547) |
0.376 (0.749) |
0.199 (0.575) |
0.0268 (0.178) |
6q loss | 280 (26%) | 799 |
0.297 (0.67) |
0.00115 (0.0217) |
0.764 (0.958) |
0.534 (0.826) |
0.356 (0.737) |
1 (1.00) |
0.203 (0.575) |
0.00567 (0.0665) |
0.479 (0.796) |
0.34 (0.727) |
0.692 (0.924) |
0.575 (0.857) |
7p loss | 111 (10%) | 968 |
0.583 (0.861) |
0.751 (0.953) |
0.0922 (0.381) |
0.283 (0.656) |
0.032 (0.202) |
0.159 (0.509) |
1 (1.00) |
0.288 (0.66) |
0.00015 (0.00476) |
0.275 (0.656) |
0.199 (0.575) |
0.418 (0.766) |
8p loss | 394 (37%) | 685 |
0.172 (0.53) |
0.0981 (0.394) |
0.997 (1.00) |
0.366 (0.742) |
0.76 (0.954) |
0.379 (0.749) |
0.552 (0.839) |
1 (1.00) |
0.00025 (0.00683) |
0.994 (1.00) |
0.0398 (0.228) |
0.404 (0.759) |
12p loss | 152 (14%) | 927 |
0.873 (1.00) |
0.347 (0.73) |
0.487 (0.801) |
0.00988 (0.0938) |
0.619 (0.877) |
1 (1.00) |
0.681 (0.922) |
0.167 (0.527) |
4e-05 (0.00164) |
0.908 (1.00) |
0.0686 (0.325) |
0.641 (0.891) |
16q loss | 590 (55%) | 489 |
0.285 (0.66) |
0.00088 (0.0173) |
0.604 (0.872) |
0.435 (0.776) |
0.212 (0.585) |
0.13 (0.455) |
0.154 (0.502) |
0.747 (0.953) |
1e-05 (0.000492) |
0.0755 (0.336) |
0.276 (0.656) |
1 (1.00) |
17p loss | 579 (54%) | 500 |
0.232 (0.607) |
0.0547 (0.279) |
0.488 (0.801) |
0.0153 (0.124) |
0.887 (1.00) |
1 (1.00) |
0.563 (0.848) |
0.158 (0.508) |
0.0115 (0.103) |
0.882 (1.00) |
0.147 (0.491) |
1 (1.00) |
19q loss | 164 (15%) | 915 |
0.137 (0.474) |
0.384 (0.749) |
0.441 (0.776) |
0.532 (0.826) |
0.161 (0.512) |
0.125 (0.45) |
0.407 (0.759) |
0.724 (0.944) |
1e-05 (0.000492) |
0.45 (0.783) |
0.0161 (0.129) |
1 (1.00) |
22q loss | 482 (45%) | 597 |
0.373 (0.749) |
0.463 (0.792) |
0.686 (0.922) |
0.282 (0.656) |
0.396 (0.75) |
0.829 (0.984) |
0.39 (0.75) |
0.0082 (0.0858) |
0.00018 (0.00521) |
0.335 (0.721) |
0.425 (0.772) |
0.744 (0.952) |
3p gain | 137 (13%) | 942 |
0.259 (0.633) |
0.257 (0.63) |
0.361 (0.741) |
0.071 (0.329) |
0.252 (0.626) |
0.535 (0.826) |
1 (1.00) |
0.511 (0.818) |
8e-05 (0.00281) |
0.347 (0.73) |
0.329 (0.709) |
0.799 (0.976) |
4p gain | 75 (7%) | 1004 |
0.248 (0.621) |
0.754 (0.954) |
0.144 (0.49) |
0.0925 (0.381) |
0.701 (0.928) |
0.677 (0.922) |
0.201 (0.575) |
0.526 (0.824) |
0.0021 (0.0333) |
0.84 (0.988) |
0.516 (0.823) |
0.74 (0.951) |
4q gain | 71 (7%) | 1008 |
0.0569 (0.285) |
0.943 (1.00) |
0.388 (0.75) |
0.209 (0.582) |
0.735 (0.947) |
0.667 (0.915) |
0.56 (0.847) |
0.896 (1.00) |
0.00345 (0.0485) |
0.837 (0.986) |
0.438 (0.776) |
0.732 (0.947) |
7p gain | 313 (29%) | 766 |
0.687 (0.922) |
0.0864 (0.368) |
0.492 (0.806) |
0.671 (0.919) |
0.677 (0.922) |
0.636 (0.888) |
0.0475 (0.255) |
0.29 (0.66) |
0.0125 (0.109) |
0.729 (0.945) |
0.238 (0.612) |
0.587 (0.861) |
10q gain | 114 (11%) | 965 |
0.881 (1.00) |
0.91 (1.00) |
0.913 (1.00) |
0.378 (0.749) |
0.499 (0.81) |
0.73 (0.945) |
1 (1.00) |
1 (1.00) |
0.0117 (0.103) |
0.319 (0.702) |
0.116 (0.429) |
0.585 (0.861) |
11p gain | 141 (13%) | 938 |
0.945 (1.00) |
0.865 (1) |
0.5 (0.81) |
0.778 (0.965) |
0.193 (0.559) |
0.52 (0.824) |
0.663 (0.914) |
0.391 (0.75) |
0.0694 (0.326) |
0.0113 (0.103) |
0.691 (0.924) |
0.336 (0.721) |
11q gain | 96 (9%) | 983 |
0.288 (0.66) |
0.819 (0.984) |
0.597 (0.872) |
0.441 (0.776) |
0.568 (0.854) |
1 (1.00) |
1 (1.00) |
0.129 (0.455) |
0.00165 (0.0275) |
0.187 (0.552) |
0.146 (0.491) |
0.386 (0.749) |
12p gain | 225 (21%) | 854 |
0.548 (0.839) |
0.641 (0.891) |
0.678 (0.922) |
0.0823 (0.357) |
0.153 (0.501) |
0.796 (0.976) |
0.143 (0.489) |
0.751 (0.953) |
0.00131 (0.0226) |
0.606 (0.872) |
0.628 (0.885) |
0.31 (0.688) |
13q gain | 93 (9%) | 986 |
0.884 (1.00) |
0.477 (0.796) |
0.63 (0.886) |
0.19 (0.555) |
0.542 (0.83) |
1 (1.00) |
1 (1.00) |
0.254 (0.626) |
0.00048 (0.0115) |
0.862 (1) |
0.837 (0.986) |
0.143 (0.49) |
14q gain | 143 (13%) | 936 |
0.56 (0.847) |
0.114 (0.425) |
0.179 (0.544) |
0.273 (0.656) |
0.121 (0.442) |
0.343 (0.73) |
1 (1.00) |
0.35 (0.732) |
0.0197 (0.146) |
0.0681 (0.324) |
0.693 (0.924) |
0.219 (0.592) |
15q gain | 88 (8%) | 991 |
0.604 (0.872) |
0.961 (1.00) |
0.689 (0.924) |
0.974 (1.00) |
0.936 (1.00) |
0.429 (0.772) |
1 (1.00) |
0.817 (0.984) |
0.00158 (0.0268) |
0.974 (1.00) |
0.213 (0.585) |
1 (1.00) |
16p gain | 462 (43%) | 617 |
0.534 (0.826) |
0.126 (0.451) |
0.549 (0.839) |
0.914 (1.00) |
0.537 (0.826) |
1 (1.00) |
0.38 (0.749) |
0.746 (0.952) |
0.00791 (0.0855) |
0.674 (0.921) |
0.0599 (0.296) |
0.0974 (0.393) |
16q gain | 142 (13%) | 937 |
0.107 (0.415) |
0.843 (0.99) |
0.502 (0.812) |
0.409 (0.759) |
0.0886 (0.372) |
0.522 (0.824) |
0.061 (0.298) |
0.772 (0.965) |
0.00773 (0.0845) |
0.277 (0.656) |
0.439 (0.776) |
0.153 (0.501) |
17q gain | 221 (20%) | 858 |
0.153 (0.501) |
0.868 (1.00) |
0.796 (0.976) |
0.438 (0.776) |
0.913 (1.00) |
0.794 (0.976) |
0.000637 (0.0143) |
0.13 (0.455) |
0.076 (0.337) |
0.371 (0.749) |
0.27 (0.655) |
0.31 (0.688) |
19q gain | 219 (20%) | 860 |
0.579 (0.858) |
0.233 (0.607) |
0.0753 (0.336) |
0.686 (0.922) |
0.115 (0.429) |
0.0625 (0.303) |
0.277 (0.656) |
0.577 (0.857) |
0.122 (0.442) |
0.0117 (0.103) |
0.913 (1.00) |
0.687 (0.922) |
xq gain | 137 (13%) | 942 |
0.472 (0.796) |
0.145 (0.49) |
0.218 (0.592) |
0.328 (0.709) |
0.7 (0.928) |
0.201 (0.575) |
1 (1.00) |
0.631 (0.886) |
0.0001 (0.00339) |
0.872 (1.00) |
0.0799 (0.35) |
0.613 (0.877) |
1q loss | 48 (4%) | 1031 |
0.282 (0.656) |
0.39 (0.75) |
0.94 (1.00) |
0.895 (1.00) |
0.0442 (0.247) |
1 (1.00) |
1 (1.00) |
0.517 (0.823) |
0.169 (0.527) |
0.212 (0.585) |
0.364 (0.742) |
0.648 (0.896) |
2p loss | 184 (17%) | 895 |
0.398 (0.753) |
0.458 (0.789) |
0.283 (0.656) |
0.426 (0.772) |
0.0667 (0.319) |
0.0213 (0.152) |
0.441 (0.776) |
0.734 (0.947) |
0.227 (0.603) |
0.463 (0.792) |
0.328 (0.709) |
0.11 (0.42) |
7q loss | 120 (11%) | 959 |
0.111 (0.42) |
0.202 (0.575) |
0.526 (0.824) |
0.386 (0.749) |
0.417 (0.766) |
0.501 (0.81) |
0.634 (0.887) |
0.41 (0.759) |
0.0358 (0.211) |
0.956 (1.00) |
0.685 (0.922) |
0.112 (0.422) |
11q loss | 366 (34%) | 713 |
0.941 (1.00) |
0.916 (1.00) |
0.213 (0.585) |
0.209 (0.582) |
0.0503 (0.269) |
0.819 (0.984) |
0.12 (0.44) |
0.282 (0.656) |
0.46 (0.79) |
0.409 (0.759) |
0.00404 (0.0533) |
0.863 (1) |
13q loss | 430 (40%) | 649 |
0.0716 (0.329) |
0.22 (0.592) |
0.767 (0.96) |
0.334 (0.719) |
0.618 (0.877) |
1 (1.00) |
1 (1.00) |
0.294 (0.663) |
4e-05 (0.00164) |
0.644 (0.892) |
0.128 (0.455) |
0.239 (0.613) |
16p loss | 174 (16%) | 905 |
0.281 (0.656) |
0.743 (0.952) |
0.63 (0.886) |
0.936 (1.00) |
0.189 (0.554) |
0.236 (0.61) |
0.703 (0.928) |
0.537 (0.826) |
0.203 (0.575) |
0.0283 (0.185) |
0.0464 (0.254) |
0.824 (0.984) |
20p loss | 93 (9%) | 986 |
0.157 (0.508) |
0.0534 (0.278) |
0.816 (0.984) |
0.127 (0.455) |
0.963 (1.00) |
0.0334 (0.205) |
1 (1.00) |
0.0867 (0.368) |
0.0586 (0.291) |
0.833 (0.984) |
0.116 (0.429) |
0.368 (0.744) |
8p gain | 291 (27%) | 788 |
0.431 (0.772) |
0.956 (1.00) |
0.484 (0.799) |
0.864 (1) |
0.752 (0.954) |
0.151 (0.5) |
0.323 (0.709) |
0.384 (0.749) |
0.0577 (0.288) |
0.6 (0.872) |
0.0943 (0.387) |
0.852 (0.997) |
9p gain | 139 (13%) | 940 |
0.608 (0.872) |
0.946 (1.00) |
0.0783 (0.345) |
0.218 (0.592) |
0.158 (0.508) |
0.757 (0.954) |
0.382 (0.749) |
0.505 (0.814) |
0.254 (0.626) |
0.564 (0.848) |
0.423 (0.772) |
1 (1.00) |
9q gain | 122 (11%) | 957 |
0.242 (0.614) |
0.571 (0.856) |
0.147 (0.491) |
0.178 (0.544) |
0.529 (0.825) |
1 (1.00) |
0.38 (0.749) |
0.484 (0.799) |
0.0739 (0.333) |
0.965 (1.00) |
0.35 (0.732) |
1 (1.00) |
2q loss | 210 (19%) | 869 |
0.272 (0.656) |
0.722 (0.944) |
0.254 (0.626) |
0.292 (0.661) |
0.116 (0.429) |
0.0543 (0.279) |
1 (1.00) |
0.809 (0.981) |
0.106 (0.411) |
0.364 (0.742) |
0.488 (0.801) |
0.133 (0.463) |
6p loss | 190 (18%) | 889 |
0.846 (0.992) |
0.0557 (0.281) |
0.841 (0.989) |
0.6 (0.872) |
0.665 (0.915) |
1 (1.00) |
0.703 (0.928) |
0.273 (0.656) |
0.276 (0.656) |
0.816 (0.984) |
0.526 (0.824) |
0.662 (0.914) |
8q loss | 93 (9%) | 986 |
0.227 (0.603) |
0.618 (0.877) |
0.432 (0.772) |
0.299 (0.671) |
0.277 (0.656) |
0.247 (0.621) |
0.614 (0.877) |
0.171 (0.529) |
0.805 (0.979) |
0.892 (1.00) |
0.0722 (0.329) |
0.386 (0.749) |
xq loss | 189 (18%) | 890 |
0.874 (1.00) |
0.12 (0.44) |
0.726 (0.944) |
0.0953 (0.389) |
0.601 (0.872) |
0.265 (0.646) |
0.451 (0.783) |
0.451 (0.783) |
0.129 (0.455) |
0.524 (0.824) |
0.175 (0.535) |
1 (1.00) |
P value = 0.00811 (Fisher's exact test), Q value = 0.086
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
1P GAIN MUTATED | 42 | 144 | 26 | 14 |
1P GAIN WILD-TYPE | 232 | 481 | 111 | 26 |
P value = 0.00186 (Fisher's exact test), Q value = 0.03
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
1P GAIN MUTATED | 0 | 173 | 24 | 3 | 4 | 8 | 2 | 13 |
1P GAIN WILD-TYPE | 1 | 595 | 177 | 3 | 5 | 22 | 15 | 33 |
P value = 0.0166 (Fisher's exact test), Q value = 0.13
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 83 | 6 | 6 | 352 | 253 | 2 | 155 | 27 | 65 | 20 | 13 |
1Q GAIN MUTATED | 48 | 48 | 2 | 6 | 240 | 168 | 1 | 97 | 22 | 49 | 11 | 8 |
1Q GAIN WILD-TYPE | 41 | 35 | 4 | 0 | 112 | 85 | 1 | 58 | 5 | 16 | 9 | 5 |
P value = 7e-04 (Fisher's exact test), Q value = 0.015
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
1Q GAIN MUTATED | 155 | 431 | 88 | 32 |
1Q GAIN WILD-TYPE | 119 | 194 | 49 | 8 |
P value = 0.00173 (Fisher's exact test), Q value = 0.028
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
1Q GAIN MUTATED | 1 | 485 | 156 | 4 | 4 | 18 | 8 | 31 |
1Q GAIN WILD-TYPE | 0 | 283 | 45 | 2 | 5 | 12 | 9 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
2P GAIN MUTATED | 1 | 107 | 5 | 2 | 3 | 1 | 0 | 3 |
2P GAIN WILD-TYPE | 0 | 661 | 196 | 4 | 6 | 29 | 17 | 43 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0049
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
2P GAIN MUTATED | 1 | 11 | 32 | 67 |
2P GAIN WILD-TYPE | 0 | 49 | 149 | 677 |
P value = 0.0168 (Fisher's exact test), Q value = 0.13
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 39 | 874 |
2P GAIN MUTATED | 0 | 104 |
2P GAIN WILD-TYPE | 39 | 770 |
P value = 0.00053 (Fisher's exact test), Q value = 0.012
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
2Q GAIN MUTATED | 0 | 64 | 3 | 0 | 3 | 0 | 0 | 3 |
2Q GAIN WILD-TYPE | 1 | 704 | 198 | 6 | 6 | 30 | 17 | 43 |
P value = 0.00602 (Fisher's exact test), Q value = 0.07
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
2Q GAIN MUTATED | 0 | 9 | 18 | 39 |
2Q GAIN WILD-TYPE | 1 | 51 | 163 | 705 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0028
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
3P GAIN MUTATED | 0 | 116 | 7 | 2 | 2 | 4 | 1 | 5 |
3P GAIN WILD-TYPE | 1 | 652 | 194 | 4 | 7 | 26 | 16 | 41 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
3Q GAIN MUTATED | 0 | 181 | 10 | 4 | 4 | 6 | 1 | 7 |
3Q GAIN WILD-TYPE | 1 | 587 | 191 | 2 | 5 | 24 | 16 | 39 |
P value = 0.0233 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 913 | 2.4 (4.7) |
3Q GAIN MUTATED | 177 | 2.0 (4.2) |
3Q GAIN WILD-TYPE | 736 | 2.5 (4.8) |
P value = 0.0112 (Fisher's exact test), Q value = 0.1
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
3Q GAIN MUTATED | 1 | 13 | 47 | 129 |
3Q GAIN WILD-TYPE | 0 | 47 | 134 | 615 |
P value = 0.0021 (Fisher's exact test), Q value = 0.033
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
4P GAIN MUTATED | 0 | 58 | 4 | 1 | 3 | 3 | 1 | 5 |
4P GAIN WILD-TYPE | 1 | 710 | 197 | 5 | 6 | 27 | 16 | 41 |
P value = 0.00345 (Fisher's exact test), Q value = 0.048
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
4Q GAIN MUTATED | 0 | 55 | 4 | 2 | 2 | 2 | 1 | 5 |
4Q GAIN WILD-TYPE | 1 | 713 | 197 | 4 | 7 | 28 | 16 | 41 |
P value = 0.0245 (logrank test), Q value = 0.17
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1065 | 148 | 0.0 - 282.9 (28.2) |
5P GAIN MUTATED | 312 | 46 | 0.0 - 233.6 (23.8) |
5P GAIN WILD-TYPE | 753 | 102 | 0.0 - 282.9 (30.2) |
P value = 0.0142 (Fisher's exact test), Q value = 0.12
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 506 | 358 | 119 | 77 |
5P GAIN MUTATED | 161 | 87 | 44 | 18 |
5P GAIN WILD-TYPE | 345 | 271 | 75 | 59 |
P value = 0.0231 (Fisher's exact test), Q value = 0.16
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
5P GAIN MUTATED | 1 | 228 | 56 | 2 | 7 | 9 | 2 | 10 |
5P GAIN WILD-TYPE | 0 | 540 | 145 | 4 | 2 | 21 | 15 | 36 |
P value = 0.0102 (Wilcoxon-test), Q value = 0.095
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1064 | 58.6 (13.2) |
5Q GAIN MUTATED | 208 | 60.6 (12.5) |
5Q GAIN WILD-TYPE | 856 | 58.2 (13.3) |
P value = 0.0367 (Fisher's exact test), Q value = 0.21
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
5Q GAIN MUTATED | 0 | 140 | 47 | 1 | 6 | 7 | 2 | 8 |
5Q GAIN WILD-TYPE | 1 | 628 | 154 | 5 | 3 | 23 | 15 | 38 |
P value = 0.00086 (Fisher's exact test), Q value = 0.017
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
5Q GAIN MUTATED | 0 | 7 | 19 | 162 |
5Q GAIN WILD-TYPE | 1 | 53 | 162 | 582 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
6P GAIN MUTATED | 0 | 165 | 21 | 5 | 4 | 4 | 1 | 7 |
6P GAIN WILD-TYPE | 1 | 603 | 180 | 1 | 5 | 26 | 16 | 39 |
P value = 0.00991 (Fisher's exact test), Q value = 0.094
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
6P GAIN MUTATED | 0 | 8 | 50 | 131 |
6P GAIN WILD-TYPE | 1 | 52 | 131 | 613 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
6Q GAIN MUTATED | 0 | 117 | 15 | 5 | 4 | 4 | 1 | 3 |
6Q GAIN WILD-TYPE | 1 | 651 | 186 | 1 | 5 | 26 | 16 | 43 |
P value = 0.0356 (Wilcoxon-test), Q value = 0.21
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 913 | 2.4 (4.7) |
6Q GAIN MUTATED | 126 | 2.4 (5.4) |
6Q GAIN WILD-TYPE | 787 | 2.4 (4.5) |
P value = 0.0125 (Fisher's exact test), Q value = 0.11
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
7P GAIN MUTATED | 1 | 241 | 42 | 1 | 5 | 8 | 2 | 13 |
7P GAIN WILD-TYPE | 0 | 527 | 159 | 5 | 4 | 22 | 15 | 33 |
P value = 0.0189 (Fisher's exact test), Q value = 0.14
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
7Q GAIN MUTATED | 1 | 206 | 37 | 2 | 5 | 6 | 2 | 9 |
7Q GAIN WILD-TYPE | 0 | 562 | 164 | 4 | 4 | 24 | 15 | 37 |
P value = 0.0399 (Fisher's exact test), Q value = 0.23
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
7Q GAIN MUTATED | 0 | 15 | 59 | 170 |
7Q GAIN WILD-TYPE | 1 | 45 | 122 | 574 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
8Q GAIN MUTATED | 1 | 416 | 59 | 5 | 6 | 14 | 5 | 22 |
8Q GAIN WILD-TYPE | 0 | 352 | 142 | 1 | 3 | 16 | 12 | 24 |
P value = 0.00638 (Fisher's exact test), Q value = 0.072
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
8Q GAIN MUTATED | 1 | 29 | 106 | 338 |
8Q GAIN WILD-TYPE | 0 | 31 | 75 | 406 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
10P GAIN MUTATED | 0 | 177 | 16 | 4 | 1 | 4 | 0 | 6 |
10P GAIN WILD-TYPE | 1 | 591 | 185 | 2 | 8 | 26 | 17 | 40 |
P value = 0.00124 (Fisher's exact test), Q value = 0.022
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
10P GAIN MUTATED | 1 | 10 | 51 | 126 |
10P GAIN WILD-TYPE | 0 | 50 | 130 | 618 |
P value = 0.0117 (Fisher's exact test), Q value = 0.1
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
10Q GAIN MUTATED | 0 | 96 | 10 | 2 | 1 | 2 | 0 | 3 |
10Q GAIN WILD-TYPE | 1 | 672 | 191 | 4 | 8 | 28 | 17 | 43 |
P value = 0.0113 (Wilcoxon-test), Q value = 0.1
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 913 | 2.4 (4.7) |
11P GAIN MUTATED | 120 | 1.8 (3.7) |
11P GAIN WILD-TYPE | 793 | 2.5 (4.8) |
P value = 0.00165 (Fisher's exact test), Q value = 0.028
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
11Q GAIN MUTATED | 0 | 77 | 5 | 2 | 1 | 3 | 1 | 7 |
11Q GAIN WILD-TYPE | 1 | 691 | 196 | 4 | 8 | 27 | 16 | 39 |
P value = 0.00131 (Fisher's exact test), Q value = 0.023
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
12P GAIN MUTATED | 1 | 178 | 27 | 2 | 2 | 9 | 1 | 4 |
12P GAIN WILD-TYPE | 0 | 590 | 174 | 4 | 7 | 21 | 16 | 42 |
P value = 0.031 (Fisher's exact test), Q value = 0.2
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 506 | 358 | 119 | 77 |
12Q GAIN MUTATED | 74 | 59 | 28 | 19 |
12Q GAIN WILD-TYPE | 432 | 299 | 91 | 58 |
P value = 0.0405 (Fisher's exact test), Q value = 0.23
nPatients | FEMALE | MALE |
---|---|---|
ALL | 1067 | 12 |
12Q GAIN MUTATED | 181 | 5 |
12Q GAIN WILD-TYPE | 886 | 7 |
P value = 0.0212 (Fisher's exact test), Q value = 0.15
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
12Q GAIN MUTATED | 0 | 146 | 25 | 1 | 0 | 9 | 1 | 3 |
12Q GAIN WILD-TYPE | 1 | 622 | 176 | 5 | 9 | 21 | 16 | 43 |
P value = 0.0183 (Wilcoxon-test), Q value = 0.14
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 913 | 2.4 (4.7) |
12Q GAIN MUTATED | 149 | 3.1 (5.3) |
12Q GAIN WILD-TYPE | 764 | 2.2 (4.5) |
P value = 0.00048 (Fisher's exact test), Q value = 0.012
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
13Q GAIN MUTATED | 0 | 75 | 4 | 1 | 3 | 2 | 2 | 6 |
13Q GAIN WILD-TYPE | 1 | 693 | 197 | 5 | 6 | 28 | 15 | 40 |
P value = 0.0197 (Fisher's exact test), Q value = 0.15
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
14Q GAIN MUTATED | 0 | 110 | 15 | 0 | 3 | 8 | 2 | 5 |
14Q GAIN WILD-TYPE | 1 | 658 | 186 | 6 | 6 | 22 | 15 | 41 |
P value = 0.00158 (Fisher's exact test), Q value = 0.027
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
15Q GAIN MUTATED | 0 | 76 | 3 | 0 | 1 | 1 | 2 | 4 |
15Q GAIN WILD-TYPE | 1 | 692 | 198 | 6 | 8 | 29 | 15 | 42 |
P value = 0.00791 (Fisher's exact test), Q value = 0.086
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
16P GAIN MUTATED | 1 | 340 | 86 | 2 | 3 | 16 | 2 | 11 |
16P GAIN WILD-TYPE | 0 | 428 | 115 | 4 | 6 | 14 | 15 | 35 |
P value = 0.00773 (Fisher's exact test), Q value = 0.085
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
16Q GAIN MUTATED | 1 | 112 | 14 | 1 | 3 | 5 | 1 | 5 |
16Q GAIN WILD-TYPE | 0 | 656 | 187 | 5 | 6 | 25 | 16 | 41 |
P value = 0.00444 (Fisher's exact test), Q value = 0.057
nPatients | FEMALE | MALE |
---|---|---|
ALL | 1067 | 12 |
17P GAIN MUTATED | 105 | 5 |
17P GAIN WILD-TYPE | 962 | 7 |
P value = 0.0157 (Fisher's exact test), Q value = 0.13
nPatients | NO | YES |
---|---|---|
ALL | 437 | 547 |
17P GAIN MUTATED | 34 | 69 |
17P GAIN WILD-TYPE | 403 | 478 |
P value = 0.000637 (Fisher's exact test), Q value = 0.014
nPatients | FEMALE | MALE |
---|---|---|
ALL | 1067 | 12 |
17Q GAIN MUTATED | 213 | 8 |
17Q GAIN WILD-TYPE | 854 | 4 |
P value = 0.0292 (Fisher's exact test), Q value = 0.19
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 506 | 358 | 119 | 77 |
18P GAIN MUTATED | 100 | 44 | 17 | 13 |
18P GAIN WILD-TYPE | 406 | 314 | 102 | 64 |
P value = 0.00084 (Fisher's exact test), Q value = 0.017
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
18P GAIN MUTATED | 0 | 145 | 15 | 2 | 2 | 5 | 0 | 7 |
18P GAIN WILD-TYPE | 1 | 623 | 186 | 4 | 7 | 25 | 17 | 39 |
P value = 0.0189 (Wilcoxon-test), Q value = 0.14
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 913 | 2.4 (4.7) |
18P GAIN MUTATED | 145 | 2.1 (4.4) |
18P GAIN WILD-TYPE | 768 | 2.4 (4.7) |
P value = 0.00018 (Fisher's exact test), Q value = 0.0052
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
18P GAIN MUTATED | 0 | 7 | 49 | 101 |
18P GAIN WILD-TYPE | 1 | 53 | 132 | 643 |
P value = 0.00553 (Fisher's exact test), Q value = 0.066
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
18Q GAIN MUTATED | 0 | 127 | 13 | 1 | 1 | 5 | 0 | 6 |
18Q GAIN WILD-TYPE | 1 | 641 | 188 | 5 | 8 | 25 | 17 | 40 |
P value = 0.0239 (Fisher's exact test), Q value = 0.16
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
18Q GAIN MUTATED | 0 | 8 | 38 | 92 |
18Q GAIN WILD-TYPE | 1 | 52 | 143 | 652 |
P value = 0.0214 (Fisher's exact test), Q value = 0.15
nPatients | 0 | 1 |
---|---|---|
ALL | 889 | 22 |
19P GAIN MUTATED | 162 | 0 |
19P GAIN WILD-TYPE | 727 | 22 |
P value = 0.0354 (Wilcoxon-test), Q value = 0.21
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 913 | 2.4 (4.7) |
19P GAIN MUTATED | 170 | 2.1 (4.8) |
19P GAIN WILD-TYPE | 743 | 2.5 (4.6) |
P value = 0.0117 (Wilcoxon-test), Q value = 0.1
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 913 | 2.4 (4.7) |
19Q GAIN MUTATED | 193 | 1.9 (4.3) |
19Q GAIN WILD-TYPE | 720 | 2.5 (4.8) |
P value = 0.00819 (Fisher's exact test), Q value = 0.086
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 506 | 358 | 119 | 77 |
20P GAIN MUTATED | 191 | 125 | 61 | 24 |
20P GAIN WILD-TYPE | 315 | 233 | 58 | 53 |
P value = 0.0132 (Fisher's exact test), Q value = 0.11
nPatients | FEMALE | MALE |
---|---|---|
ALL | 1067 | 12 |
20P GAIN MUTATED | 401 | 9 |
20P GAIN WILD-TYPE | 666 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
20P GAIN MUTATED | 0 | 334 | 45 | 2 | 5 | 10 | 1 | 12 |
20P GAIN WILD-TYPE | 1 | 434 | 156 | 4 | 4 | 20 | 16 | 34 |
P value = 0.00371 (Fisher's exact test), Q value = 0.051
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
20Q GAIN MUTATED | 101 | 281 | 44 | 22 |
20Q GAIN WILD-TYPE | 173 | 344 | 93 | 18 |
P value = 0.0326 (Fisher's exact test), Q value = 0.2
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 506 | 358 | 119 | 77 |
20Q GAIN MUTATED | 208 | 139 | 64 | 29 |
20Q GAIN WILD-TYPE | 298 | 219 | 55 | 48 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
20Q GAIN MUTATED | 0 | 368 | 49 | 1 | 6 | 10 | 1 | 15 |
20Q GAIN WILD-TYPE | 1 | 400 | 152 | 5 | 3 | 20 | 16 | 31 |
P value = 0.028 (logrank test), Q value = 0.18
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1065 | 148 | 0.0 - 282.9 (28.2) |
21Q GAIN MUTATED | 197 | 37 | 0.0 - 282.9 (28.0) |
21Q GAIN WILD-TYPE | 868 | 111 | 0.0 - 281.3 (28.2) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
21Q GAIN MUTATED | 0 | 169 | 17 | 2 | 4 | 0 | 1 | 5 |
21Q GAIN WILD-TYPE | 1 | 599 | 184 | 4 | 5 | 30 | 16 | 41 |
P value = 0.0258 (Fisher's exact test), Q value = 0.17
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
21Q GAIN MUTATED | 1 | 10 | 43 | 122 |
21Q GAIN WILD-TYPE | 0 | 50 | 138 | 622 |
P value = 0.00032 (Fisher's exact test), Q value = 0.0083
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
22Q GAIN MUTATED | 0 | 81 | 4 | 1 | 2 | 2 | 1 | 8 |
22Q GAIN WILD-TYPE | 1 | 687 | 197 | 5 | 7 | 28 | 16 | 38 |
P value = 0.0328 (Fisher's exact test), Q value = 0.2
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
22Q GAIN MUTATED | 1 | 7 | 21 | 59 |
22Q GAIN WILD-TYPE | 0 | 53 | 160 | 685 |
P value = 0.00021 (Fisher's exact test), Q value = 0.0059
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
XP GAIN MUTATED | 1 | 122 | 11 | 3 | 2 | 4 | 2 | 5 |
XP GAIN WILD-TYPE | 0 | 646 | 190 | 3 | 7 | 26 | 15 | 41 |
P value = 0.0318 (Fisher's exact test), Q value = 0.2
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
XP GAIN MUTATED | 1 | 6 | 32 | 91 |
XP GAIN WILD-TYPE | 0 | 54 | 149 | 653 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0034
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
XQ GAIN MUTATED | 1 | 113 | 9 | 3 | 1 | 2 | 2 | 5 |
XQ GAIN WILD-TYPE | 0 | 655 | 192 | 3 | 8 | 28 | 15 | 41 |
P value = 0.00534 (logrank test), Q value = 0.064
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1065 | 148 | 0.0 - 282.9 (28.2) |
1P LOSS MUTATED | 223 | 45 | 0.2 - 233.6 (26.7) |
1P LOSS WILD-TYPE | 842 | 103 | 0.0 - 282.9 (28.5) |
P value = 0.000666 (Wilcoxon-test), Q value = 0.015
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1064 | 58.6 (13.2) |
1P LOSS MUTATED | 221 | 61.2 (13.1) |
1P LOSS WILD-TYPE | 843 | 58.0 (13.2) |
P value = 0.0105 (Fisher's exact test), Q value = 0.098
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 83 | 6 | 6 | 352 | 253 | 2 | 155 | 27 | 65 | 20 | 13 |
1P LOSS MUTATED | 13 | 15 | 0 | 1 | 69 | 46 | 1 | 40 | 13 | 18 | 7 | 3 |
1P LOSS WILD-TYPE | 76 | 68 | 6 | 5 | 283 | 207 | 1 | 115 | 14 | 47 | 13 | 10 |
P value = 0.00949 (Fisher's exact test), Q value = 0.092
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
1P LOSS MUTATED | 49 | 130 | 30 | 17 |
1P LOSS WILD-TYPE | 225 | 495 | 107 | 23 |
P value = 0.0138 (Fisher's exact test), Q value = 0.12
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 506 | 358 | 119 | 77 |
1P LOSS MUTATED | 86 | 80 | 32 | 22 |
1P LOSS WILD-TYPE | 420 | 278 | 87 | 55 |
P value = 0.00292 (Wilcoxon-test), Q value = 0.042
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 913 | 2.4 (4.7) |
1P LOSS MUTATED | 178 | 3.1 (5.2) |
1P LOSS WILD-TYPE | 735 | 2.2 (4.5) |
P value = 0.0442 (Fisher's exact test), Q value = 0.25
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 506 | 358 | 119 | 77 |
1Q LOSS MUTATED | 14 | 22 | 8 | 4 |
1Q LOSS WILD-TYPE | 492 | 336 | 111 | 73 |
P value = 0.0213 (Fisher's exact test), Q value = 0.15
nPatients | 0 | 1 |
---|---|---|
ALL | 889 | 22 |
2P LOSS MUTATED | 146 | 8 |
2P LOSS WILD-TYPE | 743 | 14 |
P value = 0.00129 (Fisher's exact test), Q value = 0.023
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
3P LOSS MUTATED | 32 | 132 | 20 | 3 |
3P LOSS WILD-TYPE | 242 | 493 | 117 | 37 |
P value = 0.0216 (Fisher's exact test), Q value = 0.15
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
3P LOSS MUTATED | 0 | 154 | 20 | 1 | 2 | 3 | 1 | 7 |
3P LOSS WILD-TYPE | 1 | 614 | 181 | 5 | 7 | 27 | 16 | 39 |
P value = 0.0247 (Fisher's exact test), Q value = 0.17
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
3P LOSS MUTATED | 0 | 16 | 42 | 119 |
3P LOSS WILD-TYPE | 1 | 44 | 139 | 625 |
P value = 0.0319 (Fisher's exact test), Q value = 0.2
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 39 | 874 |
3P LOSS MUTATED | 2 | 165 |
3P LOSS WILD-TYPE | 37 | 709 |
P value = 0.00252 (Fisher's exact test), Q value = 0.039
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
3Q LOSS MUTATED | 16 | 78 | 9 | 1 |
3Q LOSS WILD-TYPE | 258 | 547 | 128 | 39 |
P value = 0.0268 (Fisher's exact test), Q value = 0.18
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 39 | 874 |
3Q LOSS MUTATED | 0 | 94 |
3Q LOSS WILD-TYPE | 39 | 780 |
P value = 0.0129 (Fisher's exact test), Q value = 0.11
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
4P LOSS MUTATED | 71 | 226 | 39 | 15 |
4P LOSS WILD-TYPE | 203 | 399 | 98 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
4P LOSS MUTATED | 1 | 291 | 34 | 3 | 4 | 6 | 0 | 13 |
4P LOSS WILD-TYPE | 0 | 477 | 167 | 3 | 5 | 24 | 17 | 33 |
P value = 0.00296 (Fisher's exact test), Q value = 0.042
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
4P LOSS MUTATED | 1 | 20 | 79 | 228 |
4P LOSS WILD-TYPE | 0 | 40 | 102 | 516 |
P value = 0.0323 (Fisher's exact test), Q value = 0.2
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
4Q LOSS MUTATED | 61 | 193 | 40 | 15 |
4Q LOSS WILD-TYPE | 213 | 432 | 97 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
4Q LOSS MUTATED | 0 | 253 | 32 | 2 | 4 | 6 | 0 | 13 |
4Q LOSS WILD-TYPE | 1 | 515 | 169 | 4 | 5 | 24 | 17 | 33 |
P value = 0.00893 (Fisher's exact test), Q value = 0.088
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
4Q LOSS MUTATED | 1 | 18 | 68 | 198 |
4Q LOSS WILD-TYPE | 0 | 42 | 113 | 546 |
P value = 0.0012 (Wilcoxon-test), Q value = 0.022
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1064 | 58.6 (13.2) |
5P LOSS MUTATED | 139 | 55.3 (13.8) |
5P LOSS WILD-TYPE | 925 | 59.1 (13.1) |
P value = 0.0342 (Fisher's exact test), Q value = 0.21
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
5P LOSS MUTATED | 28 | 98 | 11 | 5 |
5P LOSS WILD-TYPE | 246 | 527 | 126 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
5P LOSS MUTATED | 0 | 121 | 3 | 4 | 0 | 5 | 0 | 8 |
5P LOSS WILD-TYPE | 1 | 647 | 198 | 2 | 9 | 25 | 17 | 38 |
P value = 0.00878 (Fisher's exact test), Q value = 0.088
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
5P LOSS MUTATED | 1 | 12 | 32 | 88 |
5P LOSS WILD-TYPE | 0 | 48 | 149 | 656 |
P value = 6.56e-05 (Wilcoxon-test), Q value = 0.0025
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1064 | 58.6 (13.2) |
5Q LOSS MUTATED | 225 | 55.7 (13.2) |
5Q LOSS WILD-TYPE | 839 | 59.4 (13.1) |
P value = 0.00406 (Fisher's exact test), Q value = 0.053
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
5Q LOSS MUTATED | 45 | 155 | 19 | 8 |
5Q LOSS WILD-TYPE | 229 | 470 | 118 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
5Q LOSS MUTATED | 1 | 201 | 5 | 5 | 0 | 5 | 0 | 10 |
5Q LOSS WILD-TYPE | 0 | 567 | 196 | 1 | 9 | 25 | 17 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
5Q LOSS MUTATED | 1 | 18 | 63 | 130 |
5Q LOSS WILD-TYPE | 0 | 42 | 118 | 614 |
P value = 0.00115 (Wilcoxon-test), Q value = 0.022
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1064 | 58.6 (13.2) |
6Q LOSS MUTATED | 278 | 56.3 (13.4) |
6Q LOSS WILD-TYPE | 786 | 59.5 (13.0) |
P value = 0.00567 (Fisher's exact test), Q value = 0.066
nPatients | NO | YES |
---|---|---|
ALL | 437 | 547 |
6Q LOSS MUTATED | 96 | 163 |
6Q LOSS WILD-TYPE | 341 | 384 |
P value = 0.032 (Fisher's exact test), Q value = 0.2
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 506 | 358 | 119 | 77 |
7P LOSS MUTATED | 60 | 28 | 18 | 4 |
7P LOSS WILD-TYPE | 446 | 330 | 101 | 73 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0048
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
7P LOSS MUTATED | 0 | 95 | 5 | 2 | 2 | 3 | 0 | 4 |
7P LOSS WILD-TYPE | 1 | 673 | 196 | 4 | 7 | 27 | 17 | 42 |
P value = 0.0358 (Fisher's exact test), Q value = 0.21
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
7Q LOSS MUTATED | 0 | 99 | 11 | 0 | 2 | 4 | 0 | 4 |
7Q LOSS WILD-TYPE | 1 | 669 | 190 | 6 | 7 | 26 | 17 | 42 |
P value = 0.00025 (Fisher's exact test), Q value = 0.0068
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
8P LOSS MUTATED | 1 | 313 | 50 | 2 | 1 | 8 | 3 | 16 |
8P LOSS WILD-TYPE | 0 | 455 | 151 | 4 | 8 | 22 | 14 | 30 |
P value = 0.0398 (Fisher's exact test), Q value = 0.23
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
8P LOSS MUTATED | 1 | 30 | 71 | 261 |
8P LOSS WILD-TYPE | 0 | 30 | 110 | 483 |
P value = 0.00256 (Fisher's exact test), Q value = 0.039
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 83 | 6 | 6 | 352 | 253 | 2 | 155 | 27 | 65 | 20 | 13 |
9P LOSS MUTATED | 21 | 15 | 0 | 2 | 104 | 64 | 1 | 55 | 15 | 19 | 10 | 5 |
9P LOSS WILD-TYPE | 68 | 68 | 6 | 4 | 248 | 189 | 1 | 100 | 12 | 46 | 10 | 8 |
P value = 0.00041 (Fisher's exact test), Q value = 0.01
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
9P LOSS MUTATED | 57 | 203 | 34 | 18 |
9P LOSS WILD-TYPE | 217 | 422 | 103 | 22 |
P value = 0.00492 (Fisher's exact test), Q value = 0.06
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 506 | 358 | 119 | 77 |
9P LOSS MUTATED | 141 | 92 | 51 | 24 |
9P LOSS WILD-TYPE | 365 | 266 | 68 | 53 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
9P LOSS MUTATED | 0 | 262 | 25 | 3 | 5 | 9 | 3 | 6 |
9P LOSS WILD-TYPE | 1 | 506 | 176 | 3 | 4 | 21 | 14 | 40 |
P value = 0.00422 (Fisher's exact test), Q value = 0.055
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
9Q LOSS MUTATED | 53 | 174 | 34 | 17 |
9Q LOSS WILD-TYPE | 221 | 451 | 103 | 23 |
P value = 0.017 (Fisher's exact test), Q value = 0.13
nPatients | FEMALE | MALE |
---|---|---|
ALL | 1067 | 12 |
9Q LOSS MUTATED | 273 | 7 |
9Q LOSS WILD-TYPE | 794 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
9Q LOSS MUTATED | 0 | 232 | 22 | 2 | 4 | 9 | 3 | 8 |
9Q LOSS WILD-TYPE | 1 | 536 | 179 | 4 | 5 | 21 | 14 | 38 |
P value = 0.0128 (logrank test), Q value = 0.11
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1065 | 148 | 0.0 - 282.9 (28.2) |
10P LOSS MUTATED | 173 | 31 | 0.0 - 282.9 (24.4) |
10P LOSS WILD-TYPE | 892 | 117 | 0.0 - 281.3 (28.9) |
P value = 0.0048 (Fisher's exact test), Q value = 0.059
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
10P LOSS MUTATED | 27 | 116 | 22 | 9 |
10P LOSS WILD-TYPE | 247 | 509 | 115 | 31 |
P value = 0.00059 (Fisher's exact test), Q value = 0.014
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
10P LOSS MUTATED | 0 | 131 | 22 | 0 | 6 | 9 | 1 | 5 |
10P LOSS WILD-TYPE | 1 | 637 | 179 | 6 | 3 | 21 | 16 | 41 |
P value = 0.0181 (logrank test), Q value = 0.14
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1065 | 148 | 0.0 - 282.9 (28.2) |
10Q LOSS MUTATED | 230 | 39 | 0.0 - 282.9 (24.4) |
10Q LOSS WILD-TYPE | 835 | 109 | 0.0 - 281.3 (29.3) |
P value = 0.0048 (Fisher's exact test), Q value = 0.059
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
10Q LOSS MUTATED | 40 | 148 | 28 | 13 |
10Q LOSS WILD-TYPE | 234 | 477 | 109 | 27 |
P value = 0.00027 (Fisher's exact test), Q value = 0.0072
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
10Q LOSS MUTATED | 0 | 180 | 25 | 1 | 6 | 9 | 1 | 8 |
10Q LOSS WILD-TYPE | 1 | 588 | 176 | 5 | 3 | 21 | 16 | 38 |
P value = 0.045 (Fisher's exact test), Q value = 0.25
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
10Q LOSS MUTATED | 0 | 19 | 46 | 145 |
10Q LOSS WILD-TYPE | 1 | 41 | 135 | 599 |
P value = 0.0358 (Fisher's exact test), Q value = 0.21
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 83 | 6 | 6 | 352 | 253 | 2 | 155 | 27 | 65 | 20 | 13 |
11P LOSS MUTATED | 20 | 13 | 1 | 1 | 85 | 61 | 0 | 51 | 14 | 17 | 4 | 2 |
11P LOSS WILD-TYPE | 69 | 70 | 5 | 5 | 267 | 192 | 2 | 104 | 13 | 48 | 16 | 11 |
P value = 0.0215 (Fisher's exact test), Q value = 0.15
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
11P LOSS MUTATED | 59 | 159 | 34 | 18 |
11P LOSS WILD-TYPE | 215 | 466 | 103 | 22 |
P value = 0.00393 (Fisher's exact test), Q value = 0.053
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
11P LOSS MUTATED | 0 | 206 | 35 | 5 | 2 | 10 | 3 | 9 |
11P LOSS WILD-TYPE | 1 | 562 | 166 | 1 | 7 | 20 | 14 | 37 |
P value = 7e-04 (Fisher's exact test), Q value = 0.015
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
11P LOSS MUTATED | 1 | 18 | 62 | 162 |
11P LOSS WILD-TYPE | 0 | 42 | 119 | 582 |
P value = 0.0363 (Fisher's exact test), Q value = 0.21
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 39 | 874 |
11P LOSS MUTATED | 4 | 216 |
11P LOSS WILD-TYPE | 35 | 658 |
P value = 0.00404 (Fisher's exact test), Q value = 0.053
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
11Q LOSS MUTATED | 1 | 23 | 77 | 227 |
11Q LOSS WILD-TYPE | 0 | 37 | 104 | 517 |
P value = 0.00988 (Fisher's exact test), Q value = 0.094
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
12P LOSS MUTATED | 32 | 90 | 16 | 13 |
12P LOSS WILD-TYPE | 242 | 535 | 121 | 27 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0016
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
12P LOSS MUTATED | 0 | 130 | 11 | 2 | 3 | 3 | 1 | 2 |
12P LOSS WILD-TYPE | 1 | 638 | 190 | 4 | 6 | 27 | 16 | 44 |
P value = 0.00886 (Wilcoxon-test), Q value = 0.088
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1064 | 58.6 (13.2) |
12Q LOSS MUTATED | 136 | 56.1 (13.2) |
12Q LOSS WILD-TYPE | 928 | 59.0 (13.2) |
P value = 0.00733 (Fisher's exact test), Q value = 0.081
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
12Q LOSS MUTATED | 25 | 86 | 13 | 11 |
12Q LOSS WILD-TYPE | 249 | 539 | 124 | 29 |
P value = 0.00448 (Fisher's exact test), Q value = 0.057
nPatients | NO | YES |
---|---|---|
ALL | 437 | 547 |
12Q LOSS MUTATED | 39 | 82 |
12Q LOSS WILD-TYPE | 398 | 465 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
12Q LOSS MUTATED | 0 | 115 | 10 | 3 | 3 | 2 | 0 | 3 |
12Q LOSS WILD-TYPE | 1 | 653 | 191 | 3 | 6 | 28 | 17 | 43 |
P value = 0.00353 (Fisher's exact test), Q value = 0.049
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
12Q LOSS MUTATED | 0 | 6 | 39 | 85 |
12Q LOSS WILD-TYPE | 1 | 54 | 142 | 659 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0016
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
13Q LOSS MUTATED | 0 | 337 | 59 | 4 | 5 | 11 | 2 | 11 |
13Q LOSS WILD-TYPE | 1 | 431 | 142 | 2 | 4 | 19 | 15 | 35 |
P value = 0.0279 (logrank test), Q value = 0.18
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1065 | 148 | 0.0 - 282.9 (28.2) |
14Q LOSS MUTATED | 265 | 46 | 0.0 - 255.7 (24.8) |
14Q LOSS WILD-TYPE | 800 | 102 | 0.0 - 282.9 (29.7) |
P value = 0.0219 (Fisher's exact test), Q value = 0.15
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
14Q LOSS MUTATED | 52 | 176 | 31 | 8 |
14Q LOSS WILD-TYPE | 222 | 449 | 106 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
14Q LOSS MUTATED | 0 | 217 | 30 | 5 | 5 | 4 | 1 | 6 |
14Q LOSS WILD-TYPE | 1 | 551 | 171 | 1 | 4 | 26 | 16 | 40 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0026
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
14Q LOSS MUTATED | 0 | 14 | 70 | 162 |
14Q LOSS WILD-TYPE | 1 | 46 | 111 | 582 |
P value = 0.00268 (Fisher's exact test), Q value = 0.04
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
15Q LOSS MUTATED | 60 | 210 | 37 | 9 |
15Q LOSS WILD-TYPE | 214 | 415 | 100 | 31 |
P value = 0.0413 (Fisher's exact test), Q value = 0.23
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 506 | 358 | 119 | 77 |
15Q LOSS MUTATED | 162 | 89 | 43 | 20 |
15Q LOSS WILD-TYPE | 344 | 269 | 76 | 57 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0016
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
15Q LOSS MUTATED | 0 | 252 | 34 | 3 | 5 | 10 | 2 | 11 |
15Q LOSS WILD-TYPE | 1 | 516 | 167 | 3 | 4 | 20 | 15 | 35 |
P value = 0.0283 (Wilcoxon-test), Q value = 0.18
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 913 | 2.4 (4.7) |
16P LOSS MUTATED | 150 | 1.9 (4.2) |
16P LOSS WILD-TYPE | 763 | 2.5 (4.8) |
P value = 0.00088 (Wilcoxon-test), Q value = 0.017
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1064 | 58.6 (13.2) |
16Q LOSS MUTATED | 582 | 59.9 (12.9) |
16Q LOSS WILD-TYPE | 482 | 57.1 (13.4) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
16Q LOSS MUTATED | 0 | 387 | 161 | 3 | 1 | 18 | 3 | 17 |
16Q LOSS WILD-TYPE | 1 | 381 | 40 | 3 | 8 | 12 | 14 | 29 |
P value = 0.0153 (Fisher's exact test), Q value = 0.12
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
17P LOSS MUTATED | 126 | 358 | 74 | 19 |
17P LOSS WILD-TYPE | 148 | 267 | 63 | 21 |
P value = 0.0115 (Fisher's exact test), Q value = 0.1
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
17P LOSS MUTATED | 0 | 432 | 93 | 5 | 5 | 19 | 6 | 18 |
17P LOSS WILD-TYPE | 1 | 336 | 108 | 1 | 4 | 11 | 11 | 28 |
P value = 0.0444 (Fisher's exact test), Q value = 0.25
nPatients | FEMALE | MALE |
---|---|---|
ALL | 1067 | 12 |
17Q LOSS MUTATED | 272 | 0 |
17Q LOSS WILD-TYPE | 795 | 12 |
P value = 0.00014 (Fisher's exact test), Q value = 0.0046
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
17Q LOSS MUTATED | 0 | 214 | 36 | 4 | 5 | 5 | 0 | 8 |
17Q LOSS WILD-TYPE | 1 | 554 | 165 | 2 | 4 | 25 | 17 | 38 |
P value = 0.00841 (Fisher's exact test), Q value = 0.086
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
17Q LOSS MUTATED | 0 | 21 | 59 | 170 |
17Q LOSS WILD-TYPE | 1 | 39 | 122 | 574 |
P value = 1.99e-05 (logrank test), Q value = 0.00093
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1065 | 148 | 0.0 - 282.9 (28.2) |
18P LOSS MUTATED | 314 | 59 | 0.0 - 233.6 (24.4) |
18P LOSS WILD-TYPE | 751 | 89 | 0.0 - 282.9 (31.0) |
P value = 0.00104 (Wilcoxon-test), Q value = 0.02
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1064 | 58.6 (13.2) |
18P LOSS MUTATED | 311 | 60.7 (13.7) |
18P LOSS WILD-TYPE | 753 | 57.8 (12.9) |
P value = 0.0341 (Fisher's exact test), Q value = 0.21
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 83 | 6 | 6 | 352 | 253 | 2 | 155 | 27 | 65 | 20 | 13 |
18P LOSS MUTATED | 25 | 23 | 0 | 0 | 98 | 75 | 0 | 48 | 15 | 26 | 6 | 1 |
18P LOSS WILD-TYPE | 64 | 60 | 6 | 6 | 254 | 178 | 2 | 107 | 12 | 39 | 14 | 12 |
P value = 0.00276 (Fisher's exact test), Q value = 0.041
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
18P LOSS MUTATED | 69 | 188 | 41 | 22 |
18P LOSS WILD-TYPE | 205 | 437 | 96 | 18 |
P value = 0.0023 (Fisher's exact test), Q value = 0.036
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
18P LOSS MUTATED | 0 | 249 | 48 | 3 | 4 | 7 | 0 | 9 |
18P LOSS WILD-TYPE | 1 | 519 | 153 | 3 | 5 | 23 | 17 | 37 |
P value = 0.0455 (Fisher's exact test), Q value = 0.25
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
18P LOSS MUTATED | 0 | 27 | 53 | 213 |
18P LOSS WILD-TYPE | 1 | 33 | 128 | 531 |
P value = 0.0117 (logrank test), Q value = 0.1
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1065 | 148 | 0.0 - 282.9 (28.2) |
18Q LOSS MUTATED | 315 | 52 | 0.0 - 255.7 (23.5) |
18Q LOSS WILD-TYPE | 750 | 96 | 0.2 - 282.9 (31.0) |
P value = 0.00874 (Wilcoxon-test), Q value = 0.088
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1064 | 58.6 (13.2) |
18Q LOSS MUTATED | 313 | 60.3 (13.5) |
18Q LOSS WILD-TYPE | 751 | 57.9 (13.0) |
P value = 0.0189 (Fisher's exact test), Q value = 0.14
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 274 | 625 | 137 | 40 |
18Q LOSS MUTATED | 70 | 191 | 39 | 20 |
18Q LOSS WILD-TYPE | 204 | 434 | 98 | 20 |
P value = 0.00117 (Fisher's exact test), Q value = 0.022
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
18Q LOSS MUTATED | 1 | 246 | 53 | 2 | 5 | 7 | 0 | 7 |
18Q LOSS WILD-TYPE | 0 | 522 | 148 | 4 | 4 | 23 | 17 | 39 |
P value = 0.0092 (Wilcoxon-test), Q value = 0.09
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1064 | 58.6 (13.2) |
19P LOSS MUTATED | 192 | 56.3 (13.2) |
19P LOSS WILD-TYPE | 872 | 59.2 (13.2) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
19P LOSS MUTATED | 0 | 171 | 8 | 1 | 3 | 5 | 4 | 4 |
19P LOSS WILD-TYPE | 1 | 597 | 193 | 5 | 6 | 25 | 13 | 42 |
P value = 0.00042 (Fisher's exact test), Q value = 0.01
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
19P LOSS MUTATED | 0 | 16 | 48 | 111 |
19P LOSS WILD-TYPE | 1 | 44 | 133 | 633 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00049
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
19Q LOSS MUTATED | 0 | 144 | 5 | 1 | 0 | 4 | 4 | 5 |
19Q LOSS WILD-TYPE | 1 | 624 | 196 | 5 | 9 | 26 | 13 | 41 |
P value = 0.0161 (Fisher's exact test), Q value = 0.13
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
19Q LOSS MUTATED | 0 | 13 | 37 | 95 |
19Q LOSS WILD-TYPE | 1 | 47 | 144 | 649 |
P value = 0.0334 (Fisher's exact test), Q value = 0.21
nPatients | 0 | 1 |
---|---|---|
ALL | 889 | 22 |
20P LOSS MUTATED | 73 | 5 |
20P LOSS WILD-TYPE | 816 | 17 |
P value = 0.00641 (Wilcoxon-test), Q value = 0.072
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1064 | 58.6 (13.2) |
20Q LOSS MUTATED | 55 | 54.1 (11.7) |
20Q LOSS WILD-TYPE | 1009 | 58.9 (13.2) |
P value = 0.0347 (Fisher's exact test), Q value = 0.21
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
20Q LOSS MUTATED | 0 | 42 | 7 | 3 | 0 | 1 | 1 | 3 |
20Q LOSS WILD-TYPE | 1 | 726 | 194 | 3 | 9 | 29 | 16 | 43 |
P value = 0.0179 (Fisher's exact test), Q value = 0.14
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
20Q LOSS MUTATED | 0 | 5 | 17 | 30 |
20Q LOSS WILD-TYPE | 1 | 55 | 164 | 714 |
P value = 0.0145 (Fisher's exact test), Q value = 0.12
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 83 | 6 | 6 | 352 | 253 | 2 | 155 | 27 | 65 | 20 | 13 |
21Q LOSS MUTATED | 10 | 12 | 0 | 0 | 50 | 51 | 1 | 31 | 9 | 5 | 6 | 3 |
21Q LOSS WILD-TYPE | 79 | 71 | 6 | 6 | 302 | 202 | 1 | 124 | 18 | 60 | 14 | 10 |
P value = 0.02 (Fisher's exact test), Q value = 0.15
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 506 | 358 | 119 | 77 |
21Q LOSS MUTATED | 72 | 65 | 30 | 9 |
21Q LOSS WILD-TYPE | 434 | 293 | 89 | 68 |
P value = 0.0378 (Fisher's exact test), Q value = 0.22
nPatients | 0 | 1 |
---|---|---|
ALL | 889 | 22 |
21Q LOSS MUTATED | 147 | 8 |
21Q LOSS WILD-TYPE | 742 | 14 |
P value = 0.0149 (Fisher's exact test), Q value = 0.12
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
21Q LOSS MUTATED | 0 | 143 | 21 | 2 | 2 | 7 | 1 | 3 |
21Q LOSS WILD-TYPE | 1 | 625 | 180 | 4 | 7 | 23 | 16 | 43 |
P value = 0.0216 (Fisher's exact test), Q value = 0.15
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
21Q LOSS MUTATED | 0 | 17 | 35 | 109 |
21Q LOSS WILD-TYPE | 1 | 43 | 146 | 635 |
P value = 0.0082 (Fisher's exact test), Q value = 0.086
nPatients | NO | YES |
---|---|---|
ALL | 437 | 547 |
22Q LOSS MUTATED | 176 | 267 |
22Q LOSS WILD-TYPE | 261 | 280 |
P value = 0.00018 (Fisher's exact test), Q value = 0.0052
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
22Q LOSS MUTATED | 0 | 357 | 88 | 2 | 3 | 19 | 1 | 11 |
22Q LOSS WILD-TYPE | 1 | 411 | 113 | 4 | 6 | 11 | 16 | 35 |
P value = 0.0062 (Wilcoxon-test), Q value = 0.071
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1064 | 58.6 (13.2) |
XP LOSS MUTATED | 188 | 56.1 (13.2) |
XP LOSS WILD-TYPE | 876 | 59.2 (13.1) |
P value = 0.0424 (Fisher's exact test), Q value = 0.24
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER, SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 768 | 201 | 6 | 9 | 30 | 17 | 46 |
XP LOSS MUTATED | 0 | 154 | 21 | 0 | 0 | 6 | 3 | 7 |
XP LOSS WILD-TYPE | 1 | 614 | 180 | 6 | 9 | 24 | 14 | 39 |
P value = 0.00835 (Fisher's exact test), Q value = 0.086
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 181 | 744 |
XP LOSS MUTATED | 0 | 17 | 42 | 116 |
XP LOSS WILD-TYPE | 1 | 43 | 139 | 628 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BRCA-TP/22531238/transformed.cor.cli.txt
-
Clinical data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/BRCA-TP/22506573/BRCA-TP.merged_data.txt
-
Number of patients = 1079
-
Number of significantly arm-level cnvs = 82
-
Number of selected clinical features = 12
-
Exclude regions that fewer than K tumors have mutations, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.