Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nMutated (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
PTEN	15 (8%)	179	0.073959	0.308	0.74682	0.894	0.68741	0.836	0.59146	0.783	0.03341	0.213	0.22689	0.528	0.18447	0.496	0.19307	0.496	0.38658	0.661	0.090599	0.342
HLA-B	11 (6%)	183	0.56856	0.758	0.39648	0.672	0.90773	1	0.3282	0.611	0.45203	0.695	0.090469	0.342	0.01772	0.157	0.13572	0.445	0.0073699	0.109	0.03526	0.213
HLA-A	16 (8%)	178	0.60345	0.784	0.01036	0.109	0.32929	0.611	0.01805	0.157	0.0051799	0.109	0.065709	0.292	0.12625	0.432	0.0075399	0.109	0.21747	0.516	0.465	0.695
KRAS	11 (6%)	183	0.01005	0.109	0.00029	0.029	1	1	0.21784	0.516	0.0061299	0.109	0.00146	0.0584	0.00331	0.109	0.00073999	0.037	0.0099399	0.109	7.9999e-05	0.016
MLL2	22 (11%)	172	0.4343	0.695	0.60239	0.784	0.36832	0.641	0.23831	0.542	0.51965	0.737	0.077969	0.318	0.71546	0.862	0.3138	0.611	0.68979	0.836	0.86309	0.975
FBXW7	19 (10%)	175	0.55536	0.753	0.91066	1	0.84866	0.97	0.97138	1	0.28609	0.611	0.67735	0.836	0.18131	0.496	0.45471	0.695	0.42035	0.695	0.50352	0.724
EP300	21 (11%)	173	0.12076	0.431	0.20068	0.502	0.18209	0.496	0.03926	0.224	0.14785	0.462	0.072659	0.308	0.30048	0.611	0.0095999	0.109	1	1	0.29562	0.611
MAPK1	9 (5%)	185	0.0403	0.224	0.1436	0.462	0.33502	0.614	0.97591	1	0.093439	0.346	0.053939	0.263	0.04576	0.241	0.081959	0.328	0.03624	0.213	0.33004	0.611
MLL3	29 (15%)	165	0.15008	0.462	0.053889	0.263	0.49454	0.719	0.02094	0.168	0.0351	0.213	0.02233	0.172	0.072449	0.308	0.83723	0.97	0.32032	0.611	0.98957	1
ARID1A	14 (7%)	180	0.01142	0.114	0.057319	0.267	0.85349	0.97	0.12455	0.432	0.2052	0.502	0.00071999	0.037	0.13217	0.441	0.00461	0.109	0.23122	0.532	0.0093499	0.109
NFE2L2	12 (6%)	182	0.80813	0.951	0.0307	0.213	0.49606	0.719	0.04862	0.249	0.53709	0.749	0.04564	0.241	0.02465	0.183	0.01886	0.157	0.03302	0.213	0.55557	0.753
PIK3CA	53 (27%)	141	0.060949	0.277	0.45493	0.695	0.64048	0.806	0.29699	0.611	0.21924	0.516	0.00398	0.109	0.2896	0.611	0.34451	0.618	0.19587	0.496	0.055189	0.263
CASP8	9 (5%)	185	0.41199	0.692	0.52438	0.739	0.6182	0.798	0.16909	0.496	0.19521	0.496	0.46296	0.695	1	1	0.45122	0.695	0.31749	0.611	0.78418	0.928
FAT2	11 (6%)	183	0.84322	0.97	0.19527	0.496	1	1	0.62226	0.798	0.34911	0.618	0.48272	0.71	0.53917	0.749	0.75947	0.904	0.42418	0.695	0.33748	0.614
ZNF750	9 (5%)	185	0.1867	0.496	1	1	1	1	0.31921	0.611	0.55867	0.753	0.30349	0.611	0.28843	0.611	0.096289	0.35	0.31816	0.611	0.35134	0.618
C12ORF43	4 (2%)	190	0.85128	0.97	0.67683	0.836	NA	NA	NA	NA	0.91222	1	0.45582	0.695	0.38562	0.661	0.20571	0.502	0.51741	0.737	0.56075	0.753
C3ORF70	4 (2%)	190	0.92106	1	0.088369	0.342	0.46879	0.695	0.17857	0.496	0.65645	0.821	0.12742	0.432	0.01476	0.141	0.29821	0.611	0.0081599	0.109	0.0085999	0.109
BAP1	4 (2%)	190	0.1675	0.496	0.4534	0.695	NA	NA	NA	NA	0.44049	0.695	0.45645	0.695	0.68308	0.836	0.35226	0.618	0.55325	0.753	0.6285	0.801
USP28	4 (2%)	190	0.63633	0.805	0.25102	0.564	0.18174	0.496	0.90927	1	0.6031	0.784	1	1	0.4667	0.695	0.93707	1	0.32357	0.611	0.27445	0.61
IFNGR1	6 (3%)	188	0.14695	0.462	1	1	0.46929	0.695	0.9106	1	0.84592	0.97	1	1	0.32491	0.611	0.03333	0.213	0.19223	0.496	0.17421	0.496