tcga_participant_barcode CLI_years_to_birth CLI_vital_status CLI_days_to_death CLI_days_to_last_followup CLI_tumor_tissue_site CLI_pathologic_stage CLI_pathology_T_stage CLI_pathology_N_stage CLI_pathology_M_stage CLI_gender CLI_date_of_initial_pathologic_diagnosis CLI_radiation_therapy CLI_histological_type CLI_residual_tumor CLI_race CLI_ethnicity CLUS_CN_cNMF CLUS_Methlyation_cNMF CLUS_RPPA_cNMF CLUS_RPPA_cHierarchical CLUS_mRNAseq_cNMF CLUS_mRNAseq_cHierarchical CLUS_miRseq_cNMF CLUS_miRseq_cHierarchical CLUS_miRseq_Mature_cNMF CLUS_miRseq_Mature_cHierarchical SMG_mutsig2.0_ARID1A SMG_mutsig2.0_BAP1 SMG_mutsig2.0_CDC27 SMG_mutsig2.0_DDHD1 SMG_mutsig2.0_EPHA2 SMG_mutsig2.0_FTH1 SMG_mutsig2.0_HLA-B SMG_mutsig2.0_IDH1 SMG_mutsig2.0_IDH2_cosmic SMG_mutsig2.0_KRAS_cosmic SMG_mutsig2.0_MUC2 SMG_mutsig2.0_OTOP1 SMG_mutsig2.0_PBRM1 SMG_mutsig2.0_PCF11 SMG_mutsig2.0_PDGFD_cosmic SMG_mutsig2.0_RNPC3 SMG_mutsig2.0_SPTA1 SMG_mutsig2.0_TBX20_cosmic SMG_mutsig2.0_TP53 SMG_mutsig2.0_ZDHHC4_cosmic SMG_mutsig2.0_ZNF676 SMG_mutsig.CV_BAP1 SMG_mutsig.CV_PBRM1 SMG_mutsig.2CV_ARID1A SMG_mutsig.2CV_CLIP4 SMG_mutsig.2CV_DDHD1 SMG_mutsig.2CV_FTH1 SMG_mutsig.2CV_HLA-B SMG_mutsig.2CV_IDH1 SMG_mutsig.2CV_IDH2_cosmic SMG_mutsig.2CV_KRAS_cosmic SMG_mutsig.2CV_MLL3 SMG_mutsig.2CV_MUC2 SMG_mutsig.2CV_MUC21 SMG_mutsig.2CV_PBRM1 SMG_mutsig.2CV_PDGFD_cosmic SMG_mutsig.2CV_RUFY1 SMG_mutsig.2CV_TBX20_cosmic SMG_mutsig.2CV_TP53 SMG_mutsig.2CV_ZDHHC4_cosmic rate_non rate_sil MutsigCateg_*CpG->T MutsigCateg_*CpG->A MutsigCateg_*Cp(A/C/T)->(A/T) MutsigCateg_A->(C/G) MutsigCateg_flip SMG_ARID1A_mRNA SMG_BAP1_mRNA SMG_CDC27_mRNA SMG_CLIP4_mRNA SMG_DDHD1_mRNA SMG_EPHA2_mRNA SMG_FTH1_mRNA SMG_HLA-B_mRNA SMG_IDH1_mRNA SMG_IDH2_mRNA SMG_KRAS_mRNA SMG_MLL3_mRNA SMG_MUC21_mRNA SMG_MUC2_mRNA SMG_PBRM1_mRNA SMG_PCF11_mRNA SMG_PDGFD_mRNA SMG_RNPC3_mRNA SMG_RUFY1_mRNA SMG_SPTA1_mRNA SMG_TBX20_mRNA SMG_TP53_mRNA SMG_ZDHHC4_mRNA SMG_ZNF676_mRNA Amp_1q22 Amp_11q13.3 Amp_12q13.2 Del_1p36.21 Del_3p25.3 Del_3p13 Del_4q34.3 Del_5q13.3 Del_6q13 Del_9p21.3 Del_9q21.11 Del_10q26.12 Del_11q25 Del_12q24.13 Del_13q21.32 Del_14q22.1 Del_14q32.11 Del_14q32.13 Del_14q32.33 Del_16q23.1 CN_10p_Amp CN_10q_Amp CN_11p_Amp CN_11q_Amp CN_12p_Amp CN_12q_Amp CN_13q_Amp CN_14q_Amp CN_15q_Amp CN_16p_Amp CN_16q_Amp CN_17p_Amp CN_17q_Amp CN_18p_Amp CN_18q_Amp CN_19p_Amp CN_19q_Amp CN_1p_Amp CN_1q_Amp CN_20p_Amp CN_20q_Amp CN_21q_Amp CN_22q_Amp CN_2p_Amp CN_2q_Amp CN_3p_Amp CN_3q_Amp CN_4p_Amp CN_4q_Amp CN_5p_Amp CN_5q_Amp CN_6p_Amp CN_6q_Amp CN_7p_Amp CN_7q_Amp CN_8p_Amp CN_8q_Amp CN_9p_Amp CN_9q_Amp CN_Xp_Amp CN_Xq_Amp CN_10p_Del CN_10q_Del CN_11p_Del CN_11q_Del CN_12p_Del CN_12q_Del CN_13q_Del CN_14q_Del CN_15q_Del CN_16p_Del CN_16q_Del CN_17p_Del CN_17q_Del CN_18p_Del CN_18q_Del CN_19p_Del CN_19q_Del CN_1p_Del CN_1q_Del CN_20p_Del CN_20q_Del CN_21q_Del CN_22q_Del CN_2p_Del CN_2q_Del CN_3p_Del CN_3q_Del CN_4p_Del CN_4q_Del CN_5p_Del CN_5q_Del CN_6p_Del CN_6q_Del CN_7p_Del CN_7q_Del CN_8p_Del CN_8q_Del CN_9p_Del CN_9q_Del CN_Xp_Del CN_Xq_Del mRNA_CNMF_BMPR1B_3.79_1 mRNA_CNMF_TNNI1_-1.73_1 mRNA_CNMF_TRIM45_-1.83_1 mRNA_CNMF_LASS2_-1.57_1 mRNA_CNMF_CALY_4.74_1 mRNA_CNMF_CPSF2_0.73_1 mRNA_CNMF_RIC8B_-1.77_1 mRNA_CNMF_SETD3_0.79_1 mRNA_CNMF_YY1_0.57_1 mRNA_CNMF_UGT2A1_-2.28_1 mRNA_CNMF_ABCG8_4.71_5 mRNA_CNMF_SLC25A18_3.88_5 mRNA_CNMF_FGA_4.09_5 mRNA_CNMF_CREB3L3_4.7_5 mRNA_CNMF_PLG_7.49_5 mRNA_CNMF_NMU_-4.12_5 mRNA_CNMF_OR11A1_-3.79_5 mRNA_CNMF_ZNF233_-1.48_5 mRNA_CNMF_NAP1L6_-2.79_5 mRNA_CNMF_FOLR3_-2.01_5 Amp_CCND1_11q13.3_mRNA Amp_MUC1_1q22_mRNA Del_AKT1_14q32.11_mRNA Del_ALDH2_12q24.13_mRNA Del_ANKS1B_12q24.13_mRNA Del_ARHGEF12_11q25_mRNA Del_ARID1A_1p36.21_mRNA Del_ATM_11q25_mRNA Del_AXIN1_16q23.1_mRNA Del_BAP1_3p13_mRNA Del_BCL11B_14q32.11_mRNA Del_BCL7A_12q24.13_mRNA Del_BTG1_12q24.13_mRNA Del_CACNA1D_3p13_mRNA Del_CBFA2T3_16q23.1_mRNA Del_CBFB_16q23.1_mRNA Del_CBL_11q25_mRNA Del_CCNB1IP1_14q32.33_mRNA Del_CDH1_16q23.1_mRNA Del_CDH11_16q23.1_mRNA Del_CDKN2A_9p21.3_mRNA Del_CIITA_16q23.1_mRNA Del_CNTN4_3p25.3_mRNA Del_CREBBP_16q23.1_mRNA Del_CTNNB1_3p25.3_mRNA Del_CYLD_16q23.1_mRNA Del_DDX10_11q25_mRNA Del_DDX6_11q25_mRNA Del_DICER1_14q32.11_mRNA Del_ERCC4_16q23.1_mRNA Del_FANCA_16q23.1_mRNA Del_FANCC_9q21.11_mRNA Del_FANCD2_3p25.3_mRNA Del_FGFR2_10q26.12_mRNA Del_FHIT_3p13_mRNA Del_FLI1_11q25_mRNA Del_FOXA1_14q32.33_mRNA Del_FOXP1_3p13_mRNA Del_FUS_16q23.1_mRNA Del_GNAQ_9q21.11_mRNA Del_GOLGA5_14q32.11_mRNA Del_GPHN_14q32.11_mRNA Del_HERPUD1_16q23.1_mRNA Del_IL21R_16q23.1_mRNA Del_IL6ST_5q13.3_mRNA Del_KCNJ5_11q25_mRNA Del_KLF4_9q21.11_mRNA Del_KTN1_14q32.33_mRNA Del_MAF_16q23.1_mRNA Del_MAX_14q32.11_mRNA Del_MDS2_1p36.21_mRNA Del_MITF_3p13_mRNA Del_MLH1_3p25.3_mRNA Del_MYD88_3p25.3_mRNA Del_MYH11_16q23.1_mRNA Del_NFKB2_10q26.12_mRNA Del_NIN_14q22.1_mRNA Del_NR4A3_9q21.11_mRNA Del_NT5C2_10q26.12_mRNA Del_OMD_9q21.11_mRNA Del_PAFAH1B2_11q25_mRNA Del_PALB2_16q23.1_mRNA Del_PBRM1_3p13_mRNA Del_PCSK7_11q25_mRNA Del_PDE4D_5q13.3_mRNA Del_PHF3_6q13_mRNA Del_PIK3R1_5q13.3_mRNA Del_POU2AF1_11q25_mRNA Del_PPARG_3p25.3_mRNA Del_PTEN_10q26.12_mRNA Del_PTPN11_12q24.13_mRNA Del_RAF1_3p25.3_mRNA Del_SDHB_1p36.21_mRNA Del_SDHD_11q25_mRNA Del_SETD2_3p13_mRNA Del_SH2B3_12q24.13_mRNA Del_SOCS1_16q23.1_mRNA Del_SRGAP3_3p25.3_mRNA Del_SUFU_10q26.12_mRNA Del_SYK_9q21.11_mRNA Del_TAL2_9q21.11_mRNA Del_TCF7L2_10q26.12_mRNA Del_TCL1A_14q32.11_mRNA Del_TCL6_14q32.11_mRNA Del_TLX1_10q26.12_mRNA Del_TNFRSF17_16q23.1_mRNA Del_TRAF7_16q23.1_mRNA Del_TRIP11_14q32.11_mRNA Del_TSC2_16q23.1_mRNA Del_TSHR_14q32.11_mRNA Del_VHL_3p25.3_mRNA Del_VTI1A_10q26.12_mRNA Del_WWOX_16q23.1_mRNA Del_XPA_9q21.11_mRNA Del_XPC_3p25.3_mRNA TCGA-3X-AAV9 72 1 339 NA bile duct stage i t1 n0 m0 male 2010 no cholangiocarcinoma; intrahepatic r0 asian not hispanic or latino 1 1 1 1 1 1 1 1 1 1 0 0 4 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 0 0 0 0 4.473403e-06 1.179036e-06 16.2650602409639 7.2289156626506 54.8192771084337 11.4457831325301 10.2409638554217 10.831301 10.305663 10.303179 9.699133 8.527790 10.749270 15.190587 15.637950 10.424716 11.177592 10.202800 10.447954 1.122673 3.370583 9.808273 9.994554 9.881704 7.099928 10.125463 1.707613 3.029541 9.517111 9.948402 1.707613 -0.0234290 0.1029300 0.1137400 -0.0234290 -0.1400000 -0.1385800 -0.0088467 -0.0421100 -0.0714720 -0.3946400 -0.1282300 0.1263800 0.1071600 0.1137400 -0.0037758 0.0837760 0.0907200 0.0907200 0.0907200 0.0759910 0.126 0.126 0.103 0.103 0.114 0.114 0.000 0.000 0.000 0.000 0.000 -0.149 0.107 -0.257 -0.257 0.000 0.000 0.000 0.000 0.242 0.242 -0.146 0.000 0.000 0.000 -0.020 0.120 -0.109 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.026 0.117 -0.137 -0.137 0.000 0.000 0.126 0.126 0.103 0.103 0.114 0.114 0.000 0.000 0.000 0.000 0.000 -0.149 0.107 -0.257 -0.257 0.000 0.000 0.000 0.000 0.242 0.242 -0.146 0.000 0.000 0.000 -0.020 0.120 -0.109 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.026 0.117 -0.137 -0.137 0.000 0.000 7.1833446 6.3025567 6.7151054 11.8084922 4.8505694 10.0984963 8.4309873 10.5441873 10.2634781 NA 3.0295412 4.1226479 9.9412306 4.4802005 NA 4.4080529 NA 3.7664998 1.7076131 0.1226065 12.88009 11.69937 11.8649578 11.3189431 1.7076131 11.9600792 10.8313012 10.0541246 10.0992125 10.3056634 8.5489132 9.4034192 12.5014851 6.8021286 8.9837353 10.2454764 9.3075237 9.8420373 12.9514791 10.6844137 5.5149649 8.6656802 7.9300034 11.1092015 13.1584716 10.2679437 9.2034660 11.6019234 10.3484583 7.5531009 7.2791862 7.7772843 6.8300081 10.0400205 4.6462087 9.6064641 8.2337841 10.2609201 12.1371920 10.2589987 10.5882148 8.4663449 12.7563248 6.5126457 9.6627764 6.7736997 9.6334125 12.3031792 10.5676632 10.5681806 1.4445611 8.0680920 9.0022316 10.1063546 12.9146933 11.1612245 10.0459758 6.5572768 11.2154055 6.4624990 8.9364295 8.1670422 9.8082732 9.6020548 8.8719145 10.9150320 10.6264741 10.5047320 8.8248210 11.1813166 11.3220140 10.6584098 9.8900052 10.3882634 10.4372316 10.2493529 7.6579236 7.1994643 9.7647001 9.6877504 0.7076131 9.9681384 6.4172686 6.1450171 7.6422850 6.8775357 11.5809063 9.4845921 10.7188382 3.6462087 9.2673066 8.9425242 8.3987728 7.8573578 9.8607406 TCGA-3X-AAVA 50 1 445 NA bile duct stage ii t2b nx m0 female 2012 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 2 2 2 2 2 2 2 1 2 1 0 0 0 0 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 2.739526e-06 6.935508e-07 16 6 53 14 11 10.3111129 8.7111390 9.7989492 8.2268929 6.2268919 9.8773415 14.8067700 14.4540361 11.4898124 12.4363461 9.8703083 10.3955936 NA NA 8.8658950 10.1205068 13.0808807 8.4737070 11.2237920 -0.8064175 NA 11.1130780 10.1130780 4.6197358 1.38930000 -0.01422800 -0.00539920 -0.79661000 -0.78235000 -0.78235000 0.01195800 0.07613500 -0.78387000 -0.36034000 -0.02507200 -0.17028000 -0.02219500 -0.00539920 0.00083195 -1.29290000 -0.79411000 -0.79411000 -0.79411000 -0.04969500 0.000 -0.145 0.000 0.000 0.000 0.000 0.000 -0.781 0.000 0.000 0.000 0.000 0.000 -0.413 -0.600 0.000 0.000 0.000 0.412 0.000 0.000 0.000 0.000 0.000 0.000 -0.775 0.000 0.000 0.000 0.269 0.269 0.000 -0.784 0.000 0.000 0.000 0.000 0.000 0.000 -0.123 -0.123 0.000 -0.145 0.000 0.000 0.000 0.000 0.000 -0.781 0.000 0.000 0.000 0.000 0.000 -0.413 -0.600 0.000 0.000 0.000 0.412 0.000 0.000 0.000 0.000 0.000 0.000 -0.775 0.000 0.000 0.000 0.269 0.269 0.000 -0.784 0.000 0.000 0.000 0.000 0.000 0.000 -0.123 -0.123 5.1934682 8.8118554 7.7557121 14.6226149 0.1934564 9.4246910 10.2588859 10.1264226 9.4555646 2.8939058 1.7784189 4.1476649 10.7647483 2.8939058 6.0882879 NA -0.8064175 4.1476649 NA NA 11.47656 7.77467 11.0818325 10.1219881 2.6528995 12.4876597 10.3111129 9.4437680 10.2248263 8.7111390 5.9878847 9.9425012 13.3973530 7.8337149 6.7170320 10.0120520 9.5488208 10.0381755 14.0792137 9.1153106 7.0822129 7.0263597 6.8658953 11.0303090 11.9911029 9.0761128 8.8799704 11.6516200 9.1534717 7.1063588 7.5842838 9.5964818 7.5900743 12.1732521 4.1476649 8.1962849 8.1359842 9.4413972 12.2779459 10.2895259 9.6134298 7.6197343 12.2468866 4.8712621 10.6838192 4.4413972 8.2809327 12.0778310 9.3444863 9.7081838 -0.8064175 9.3571194 8.7933825 9.4788719 10.5345104 10.2109741 9.1242071 4.9748275 10.4390224 4.0008203 8.6853228 8.5728480 8.8658950 9.8744533 6.9077151 10.2762840 10.1440256 7.1182818 6.3633954 10.4408039 11.7287451 10.1293714 10.3026474 11.4493835 10.4342610 9.6982886 4.6528995 5.3019936 9.0622923 9.1476659 4.1003638 8.9797393 4.2378620 -0.8064175 NA 2.7784399 11.1871653 9.6518763 10.2011978 -0.8064175 8.9383034 8.1984485 6.3733785 8.4765579 10.1033628 TCGA-3X-AAVB 70 0 NA 402 bile duct stage ivb t3 n1 m1 female 2012 NA cholangiocarcinoma; distal r0 white not hispanic or latino 1 1 NA NA 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 4 4 0 0 0 0 0 0 4 4 0 0 0 0 0 0 0 0 0 0 0 4 5 4 0 0 0 0 4 4 0 3.016946e-06 6.588733e-07 20.5607476635514 7.47663551401869 60.7476635514019 4.67289719626168 6.54205607476635 10.764974 10.578478 10.404131 8.851417 8.639113 13.526223 15.097825 16.169145 11.324315 10.388517 10.614270 9.796473 3.959631 2.544584 10.357843 9.916010 9.725334 7.447473 10.529964 NA NA 10.349802 10.075978 3.959631 0.0025872 0.2797300 -0.2980800 0.0000000 0.1216200 0.1216200 0.2238600 -0.3099500 -0.3117100 -0.8735600 -0.0188130 -0.3083100 0.2873300 -0.2980800 0.2666600 0.2644600 0.2644600 0.2644600 0.2644600 0.2354500 -0.302 -0.302 0.280 0.280 -0.011 -0.298 0.267 0.264 -0.301 0.235 0.235 -0.293 -0.293 0.100 -0.228 0.253 0.253 0.000 0.000 -0.300 0.000 -0.308 0.264 0.000 0.000 0.122 0.122 0.224 0.224 0.272 0.272 0.000 -0.263 0.281 0.281 0.000 0.000 0.000 0.000 0.000 0.000 -0.302 -0.302 0.280 0.280 -0.011 -0.298 0.267 0.264 -0.301 0.235 0.235 -0.293 -0.293 0.100 -0.228 0.253 0.253 0.000 0.000 -0.300 0.000 -0.308 0.264 0.000 0.000 0.122 0.122 0.224 0.224 0.272 0.272 0.000 -0.263 0.281 0.281 0.000 0.000 0.000 0.000 0.000 0.000 6.6320588 6.4514864 6.5595469 11.9705113 4.8665223 10.5147019 8.0629215 10.8261398 10.2617012 -1.0403782 NA 3.0471021 11.1131856 2.1295468 -0.0403782 6.9596334 NA 4.7669873 2.5445843 1.2815499 12.50049 15.31828 11.9008646 11.7366833 4.3859004 12.3733937 10.7649744 9.9687624 9.9447639 10.5784779 7.0681581 8.2860628 11.7481480 7.5483480 5.7409923 10.7877700 9.4674283 9.5304379 13.6685558 11.6437247 4.3519534 8.4890640 6.5294899 10.9203596 13.5896134 10.3363016 9.3583771 11.3014303 10.3879937 7.2357577 7.0724896 7.7540497 8.1617572 9.5807696 5.8784973 9.1358067 5.2075610 10.6263014 11.8618202 10.6061923 10.8326931 7.9879262 11.8661484 6.2338957 8.8453298 5.4353686 10.2531052 12.5085758 10.0523908 10.5118223 NA 8.8222709 9.6052919 11.1239120 10.4138403 10.6794502 9.4987924 6.7988372 10.4469712 6.0257221 8.7956838 8.1763796 10.3578428 10.7298432 8.4748996 10.3166357 9.5445961 6.5669643 10.5948982 10.7694017 10.6518131 10.8725229 10.0504076 10.5511559 10.6075416 9.6824411 7.2905507 6.5962583 8.4890640 10.5380062 -0.0403782 10.1599191 NA 1.9596218 -0.0403782 4.7409923 11.2940912 9.9181863 10.7806102 0.9596218 9.7360667 8.3725843 7.2994837 7.8514174 10.0517300 TCGA-3X-AAVC 72 0 NA 709 bile duct stage i t1 n0 m0 female 2012 no cholangiocarcinoma; hilar/perihilar r0 white not hispanic or latino 1 1 1 3 1 3 3 2 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 3.987917e-06 1.387102e-06 19.4968553459119 4.40251572327044 55.9748427672956 11.9496855345912 8.17610062893082 11.4347453 10.1123910 10.4999990 7.6082326 7.5338078 10.6895186 14.8955706 15.9418830 12.6744418 10.2465974 10.0009335 10.6514047 NA -0.8756719 8.5210213 9.9245075 8.6162695 7.4508459 9.6332016 -0.8756719 0.7093789 10.6356750 9.9808420 NA 0.0818420 -0.3072100 -0.0138150 0.0818420 -0.4671700 -0.4671700 -0.0388640 -0.4736300 -0.0008316 -0.4557600 -0.4557600 0.0367940 -0.4879600 -0.0239460 0.3908100 -0.0022168 -0.0022168 -0.0022168 -0.0022168 0.8048000 -0.485 0.000 0.000 0.000 0.000 0.000 0.391 0.000 0.394 0.805 0.805 -0.453 0.000 0.389 -0.077 -0.244 -0.244 0.000 0.268 -0.430 0.408 -0.264 -0.339 0.000 0.000 -0.467 0.834 0.000 0.000 3.657 -0.465 3.657 3.657 0.429 0.429 0.137 1.062 -0.456 -0.456 0.000 0.000 -0.485 0.000 0.000 0.000 0.000 0.000 0.391 0.000 0.394 0.805 0.805 -0.453 0.000 0.389 -0.077 -0.244 -0.244 0.000 0.268 -0.430 0.408 -0.264 -0.339 0.000 0.000 -0.467 0.834 0.000 0.000 3.657 -0.465 3.657 3.657 0.429 0.429 0.137 1.062 -0.456 -0.456 0.000 0.000 7.6751632 6.4642664 6.3240887 12.3375207 4.6479764 10.3829825 8.2012320 10.6172711 10.3320410 NA 0.1244605 2.2943414 8.1159384 7.9886029 5.3723427 2.2943414 NA 4.6162695 NA 2.9317776 10.23803 12.02226 12.039922 11.199896 7.101696 11.986279 11.434745 9.380625 10.536986 10.112391 8.775468 8.409819 12.129515 6.976165 5.314240 10.873867 8.761041 9.182408 14.653359 8.206566 9.410974 7.796842 4.481971 12.113101 12.138079 9.699956 8.333870 11.016580 10.285548 7.731747 10.216784 7.232941 8.651893 11.085143 5.516734 7.859126 9.902494 9.286808 12.547007 9.657746 10.413859 9.127232 11.728275 6.310976 8.470930 2.931778 7.037305 11.759001 11.824639 9.794187 NA 9.801255 8.860819 10.076430 9.944045 10.285548 9.589983 7.284287 10.001701 NA 7.824856 8.753773 8.521021 8.743646 7.490739 10.838233 9.623266 8.010113 7.941400 10.095960 11.685943 10.757412 11.355638 12.013540 10.427055 9.110259 7.771875 4.796842 9.128637 9.586919 1.124394 9.877633 2.124427 9.416738 5.550682 4.796842 11.842517 9.701845 10.927740 4.372346 9.402866 8.048279 9.120184 7.274164 9.726187 TCGA-3X-AAVE 60 0 NA 650 bile duct stage ii t2 n0 m0 male 2013 no cholangiocarcinoma; intrahepatic r0 asian not hispanic or latino 1 1 NA NA 3 2 1 1 4 3 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.982269e-06 8.669386e-07 28.3185840707965 4.42477876106195 45.1327433628319 15.929203539823 6.19469026548673 10.413430 10.815292 10.134570 10.014334 7.977845 9.347460 15.174799 16.050068 11.801786 12.171552 9.661817 11.059732 NA NA 9.342876 9.965971 11.264156 8.447645 11.292066 1.854474 NA 10.674641 10.023671 0.632082 0.14682 -0.10697 0.14370 -0.48418 -0.31669 -0.32007 -0.26167 -0.27619 0.00000 -0.14888 -0.14888 -0.37223 -0.10697 0.14429 -0.22562 -0.80019 -0.36045 -0.36045 -0.36045 -0.15349 0.000 0.000 -0.107 -0.107 0.144 0.144 -0.226 -0.340 0.000 -0.153 -0.153 -0.368 -0.143 -0.167 -0.167 0.000 0.000 0.147 0.147 -0.353 -0.132 -0.115 0.000 0.000 0.000 -0.175 0.145 -0.048 -0.262 0.557 0.557 0.000 0.000 0.000 0.000 0.209 0.209 -0.149 -0.149 0.000 0.000 0.000 0.000 -0.107 -0.107 0.144 0.144 -0.226 -0.340 0.000 -0.153 -0.153 -0.368 -0.143 -0.167 -0.167 0.000 0.000 0.147 0.147 -0.353 -0.132 -0.115 0.000 0.000 0.000 -0.175 0.145 -0.048 -0.262 0.557 0.557 0.000 0.000 0.000 0.000 0.209 0.209 -0.149 -0.149 0.000 0.000 3.29503236 8.77672812 7.44798659 13.45324591 -0.95288045 9.40355938 10.46495992 9.65997592 9.59207183 NA 2.04711955 4.66181799 14.02581782 4.63207041 6.55490191 -0.95288045 4.74754853 5.11319623 -0.95288045 0.04711955 12.45004 9.62548 10.94872852 12.22250096 3.63207041 12.38890414 10.41342960 10.26445926 9.88236824 10.81529170 7.02438728 9.79025872 13.42526671 6.00130460 6.43081214 9.72129968 9.30331613 8.89573037 13.77816116 8.59207164 9.63300882 9.76478370 6.47337131 10.83867725 11.82782962 10.56870783 8.73010190 11.46601409 9.68282556 7.42648534 8.33595035 8.35088792 8.37802428 12.28864368 4.69096457 8.69276578 9.57751361 10.78012265 11.91148697 9.67190280 10.10306758 7.43512433 11.53016733 7.09684690 10.19939224 4.74754853 8.68191830 11.99108727 9.11050236 10.22452691 1.63208205 11.06739288 9.08876651 10.06391571 11.61975074 11.61006523 8.67464108 5.81529106 10.02367148 3.50653847 8.99255121 8.30213578 9.34287626 10.12400974 10.33642890 10.83786308 9.25290050 8.00710914 6.30449461 10.57213867 12.17832125 10.29681345 9.49315674 10.08053043 10.43673871 10.35999032 7.35088792 6.80865920 9.58529627 9.56280718 3.80199671 8.87999731 7.62453595 2.85445452 NA 4.25655782 11.47540995 8.99108727 10.89063592 0.04711955 9.19431216 8.31623401 7.33250924 7.76820683 10.12592536 TCGA-4G-AAZF 74 0 NA 1777 bile duct stage iii t3 n0 mx female 2010 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCGA-4G-AAZG 75 0 NA 1716 bile duct stage iii t3 n0 mx male 2011 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCGA-4G-AAZO 71 0 NA 1177 bile duct stage ii t2a n0 m0 female 2012 no cholangiocarcinoma; intrahepatic r1 white not hispanic or latino 2 2 NA NA 4 3 4 3 5 4 6 6 0 4 0 0 0 0 0 0 0 0 7 0 0 0 0 4 0 0 0 6 7 6 0 4 0 0 0 0 0 0 0 0 7 0 0 4 0 0 6.015455e-06 1.810206e-06 6.55172413793103 15.5172413793103 68.6206896551724 5.51724137931035 3.79310344827586 10.097190 8.778088 9.417534 6.857725 7.474396 10.925567 14.708826 15.282184 10.410266 11.028243 10.254615 10.205075 NA NA 9.057033 10.166771 12.262708 8.687950 10.253600 NA NA 10.658960 10.645095 -0.219102 1.1586000 0.0181030 0.0349070 -0.8419500 -0.8229000 -0.8229000 -0.3569200 0.0452820 0.0606510 -0.3833600 -0.8184300 -0.0289010 0.0095883 -0.8234200 0.0428740 -0.3802200 -0.3802200 -0.3802200 -0.3802200 0.0093098 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.380 0.000 0.000 0.000 -0.393 0.000 0.000 0.000 0.000 0.000 0.489 0.489 0.000 0.000 -0.391 0.000 0.000 -0.354 -0.821 0.000 0.000 -0.357 0.000 0.000 0.000 -0.815 0.000 -0.375 0.000 0.000 -0.384 -0.384 -0.179 -0.179 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.380 0.000 0.000 0.000 -0.393 0.000 0.000 0.000 0.000 0.000 0.489 0.489 0.000 0.000 -0.391 0.000 0.000 -0.354 -0.821 0.000 0.000 -0.357 0.000 0.000 0.000 -0.815 0.000 -0.375 0.000 0.000 -0.384 -0.384 -0.179 -0.179 9.838901 7.965784 7.669652 15.155541 NA 9.408443 9.219701 9.723423 9.930656 NA 6.410265 3.240345 7.915335 1.780898 NA NA NA 4.868371 NA NA 13.10504 10.69455 11.851365 9.730736 3.240345 12.946287 10.097190 9.530778 10.305451 8.778088 5.066313 10.183921 12.637918 9.740911 4.588265 10.248514 9.686296 9.803277 14.923215 8.346963 5.711646 7.522376 6.350764 10.828033 11.601483 9.373366 8.572072 11.723790 9.711646 6.288704 5.619862 8.881571 6.780908 12.225406 5.207174 7.280755 10.284735 9.380822 11.964234 9.708687 10.558986 8.296609 11.262708 3.365874 10.453334 2.102826 8.410266 11.923335 7.950834 9.593086 NA 11.506701 8.641996 9.856388 6.318827 11.291673 8.940780 7.417534 9.925567 NA 9.096059 8.284735 9.057033 9.530812 5.535798 10.616959 9.970733 0.780898 7.111826 10.388239 10.677241 10.047695 9.698281 10.787936 10.233150 8.601088 5.803276 4.638891 8.502008 8.323941 1.365860 10.189239 NA 0.780898 NA NA 11.120202 9.772431 10.856388 NA 8.970733 8.426783 6.508830 7.645095 9.246475 TCGA-4G-AAZR 74 1 28 NA bile duct stage ii t2a n0 mx male 2013 no cholangiocarcinoma; hilar/perihilar r1 white not hispanic or latino NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCGA-4G-AAZT 62 0 NA 420 bile duct stage i t1 n0 m0 male 2013 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 3 3 3 3 4 3 3 2 4 3 5 5 0 0 0 4 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 5 7 5 0 0 4 0 0 0 0 0 0 4 7 0 0 0 0 0 3.051624e-06 1.387102e-06 22.4806201550388 6.97674418604651 44.1860465116279 18.6046511627907 7.75193798449612 8.8904336 9.3779699 8.9069636 6.8662169 6.2354514 8.2924822 16.1276634 15.6151753 10.4821534 11.4281417 8.6233295 8.8320017 0.2813125 0.2813125 7.5620256 8.8106854 10.3627382 6.0091747 11.2245022 NA NA 11.3133005 10.6199912 NA 0.513330 -0.036054 0.318510 -0.581050 -0.568430 -1.292900 -0.021274 0.305210 -0.584020 0.011958 0.011958 -0.026304 -0.030540 0.318510 -0.033405 -0.578810 -0.578810 -0.578810 -0.578810 0.305210 0.000 0.000 0.000 0.000 0.319 0.319 0.000 -0.579 0.000 0.305 0.305 0.000 0.000 0.312 0.312 0.314 0.314 0.517 0.517 0.296 0.296 0.300 -0.446 0.000 0.000 -0.228 0.341 0.000 0.000 1.097 0.305 0.328 -0.583 0.000 0.000 0.311 0.311 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.319 0.319 0.000 -0.579 0.000 0.305 0.305 0.000 0.000 0.312 0.312 0.314 0.314 0.517 0.517 0.296 0.296 0.300 -0.446 0.000 0.000 -0.228 0.341 0.000 0.000 1.097 0.305 0.328 -0.583 0.000 0.000 0.311 0.311 0.000 0.000 0.000 0.000 4.5666569 8.4233618 8.8643375 13.3979237 NA 8.8454044 10.2245022 9.1911478 8.4411261 0.2813125 5.5666569 5.1392362 10.5672349 3.7406901 2.9816883 NA 3.9816974 6.3897785 NA 3.4511847 12.3548 13.4310 10.8406319 12.7131441 2.2812531 11.1423417 8.8904336 8.1173049 10.6199912 9.3779699 3.7406901 10.1821216 13.6293605 6.1516194 6.3146784 9.4348069 7.6076847 9.6519422 13.8175627 6.3580709 8.3174284 8.6344016 5.9106104 10.5070648 11.5070647 9.1361232 9.0361423 10.9924916 8.5386425 6.1014337 6.5471043 9.2223025 6.6906462 12.9053648 5.7406875 7.5196598 5.4710801 10.0049158 12.8195650 9.3700431 9.3753325 7.7406861 10.9580934 4.7884143 4.3256455 -0.7188062 6.9747415 10.2826630 8.2354509 9.5655006 1.8662354 9.3673909 8.1516194 8.8396756 11.0241915 11.7247164 7.7569886 6.7324659 9.3036225 4.2354514 4.9816929 7.3687177 7.5620256 8.8596842 9.4266902 9.6222175 9.9106114 4.7075193 6.9886143 9.9214997 10.1993726 9.8077540 10.3533874 10.2477602 9.4499270 7.8549020 8.6799983 4.8662156 9.1760726 8.6321940 4.9536796 8.4561807 3.3687125 NA NA 1.2812531 10.9028488 8.3660634 10.7437570 NA 6.5850361 7.7365819 7.7406861 8.8358436 9.2670968 TCGA-W5-AA2G 62 0 NA 1976 bile duct stage i t1 n0 m0 female 2008 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 4 2 2 2 5 4 2 4 3 5 0 0 0 0 7 0 4 4 0 0 0 0 0 0 4 0 5 0 0 0 0 0 0 0 0 0 0 4 4 0 0 7 0 0 0 4 0 0 0 0 3.007727e-06 9.190278e-07 22.0689655172414 6.89655172413793 53.7931034482759 12.4137931034483 4.82758620689655 10.36961970 8.99499119 10.29991637 10.22982702 7.86635660 10.00827440 14.86772376 14.92418903 12.26698671 11.50436541 9.46529988 10.60494234 NA 0.06873959 8.98904787 9.54240084 12.67394315 6.59225669 10.62950562 NA -0.93126041 10.52556290 10.72824519 0.06873959 0.0000000 -0.0067813 -0.2562400 -0.5260400 0.0020805 -0.5268500 -0.5274700 0.2364300 0.0035134 -0.5200000 -0.5200000 0.0020805 -0.0067813 -0.2562400 -0.7896700 0.0062481 -0.5261400 -0.5261400 -0.5261400 0.2470000 0.000 0.000 0.000 0.000 -0.256 -0.256 -0.267 0.000 -0.255 0.245 0.245 0.000 0.000 -0.247 -0.247 -0.238 0.000 0.000 0.000 0.000 0.000 0.158 0.267 0.370 0.370 0.000 0.000 0.000 0.000 0.236 0.236 0.000 0.000 0.000 0.000 -0.518 0.000 -0.520 -0.520 0.000 0.000 0.000 0.000 0.000 0.000 -0.256 -0.256 -0.267 0.000 -0.255 0.245 0.245 0.000 0.000 -0.247 -0.247 -0.238 0.000 0.000 0.000 0.000 0.000 0.158 0.267 0.370 0.370 0.000 0.000 0.000 0.000 0.236 0.236 0.000 0.000 0.000 0.000 -0.518 0.000 -0.520 -0.520 0.000 0.000 3.592254 7.999432 7.676025 13.922882 NA 9.517844 9.806787 9.952866 9.819402 3.156154 8.570532 8.248604 15.743508 11.480471 13.390623 NA NA 4.426245 NA NA 11.729297 5.850054 11.20760690 13.26375972 4.42624462 12.88397838 10.36961970 9.89206234 10.37987586 8.99499119 5.65365624 8.49286143 11.84861965 9.38271177 5.52812744 10.59127670 9.68432487 9.62232440 14.99090787 8.37019131 3.31662366 7.51163881 6.79661592 10.90316619 11.76565615 9.46529988 8.57252099 11.34452866 10.08759080 7.09660132 8.46255748 8.01997984 8.65365767 11.76348830 4.31662366 9.12533287 9.96805215 10.15682080 11.76783378 9.82358267 10.17263865 8.52607586 12.62974438 5.75309371 11.61727626 5.13478361 8.80678739 12.64056628 9.29149006 9.75081198 0.06873959 10.87765937 8.93905993 10.20247955 9.83429627 10.49128562 9.87846327 5.88887473 10.37475684 3.59225370 9.40408544 9.01997984 8.98904787 9.60961739 6.36018867 10.77130078 10.15814563 3.92667315 7.47808602 10.90435087 11.73002792 10.87040348 10.25666573 10.82023921 10.15880759 10.24049740 5.88887473 6.09106296 8.64612413 9.27814857 0.06873959 9.32608293 0.06873959 NA 0.06873959 0.06873959 11.29981434 9.14015746 10.54999004 NA 9.88967188 8.68895173 7.61172716 7.24362053 10.24174761 TCGA-W5-AA2H 70 0 NA 1077 bile duct stage iii t3 n0 m0 female 2012 no cholangiocarcinoma; distal r0 white not hispanic or latino 1 1 1 1 3 2 1 1 1 3 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 1.97662e-06 8.32261e-07 17.0731707317073 9.75609756097561 62.1951219512195 8.53658536585366 2.4390243902439 11.3982767 11.2941819 9.6754769 8.6886322 9.9274562 8.9549370 14.6668816 16.8716249 9.2058223 11.3169524 9.2988363 10.3201259 NA 0.9051198 9.5561401 11.1116957 7.4749438 7.2330156 10.8318785 NA NA 11.1027146 9.2801277 1.9050813 -0.00055444 -0.00318590 0.00110930 -0.00055444 0.00000000 0.00000000 0.00444110 -0.00520930 0.00097064 -0.00152430 -0.00152430 -0.00124730 -0.00318590 0.00110930 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 -0.00595220 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.6420546 4.6776774 5.8436874 11.0737605 3.4900566 9.9585617 8.1080283 9.9549370 9.4749440 NA NA 5.3645199 0.3200803 0.3200803 NA NA NA 5.2743213 1.6420546 NA 9.299322 6.140304 11.6702363 11.0339420 3.2270171 9.7661752 11.3982767 11.5665695 10.5567381 11.2941819 10.4900508 8.5000348 14.3378042 2.4900566 11.2240077 10.5692393 9.8495565 9.7379784 9.4825172 8.6170420 6.6147466 11.2412229 6.3535491 11.2415949 11.7358676 11.5540451 8.7442923 12.0699953 9.8670203 7.1145419 9.1716252 7.4647842 10.0990244 6.3088104 7.9890107 11.2389891 0.9051198 10.9787837 12.9342605 8.9925512 9.2902318 7.4698730 11.9976253 9.8878443 5.1781051 3.5680564 7.8159807 10.8928261 10.7032901 11.3801462 6.8199721 6.2027684 9.5716082 10.6221935 10.6579206 13.0148102 11.1351088 7.2270161 10.0300712 2.7795539 6.0066257 7.6008964 9.5561401 11.2658769 8.0170935 10.5543445 10.1522247 13.3264519 6.1530149 10.9823491 10.0092503 11.2552246 10.1498486 10.4913027 10.7537113 10.6588622 10.8308901 7.3645199 9.2449384 12.3602443 2.3201380 7.3862152 11.3979430 6.1480718 -0.6799197 8.4950515 11.0121092 8.3862152 10.9845731 3.9639827 9.7682422 8.8079660 6.5869118 8.5680534 10.7968720 TCGA-W5-AA2I 66 1 1939 NA bile duct stage i t1 n0 m0 male 2005 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 3 3 1 1 4 5 4 3 5 2 0 0 0 0 4 0 0 0 0 0 0 0 2 0 0 0 0 0 4 0 0 0 2 0 0 0 0 0 0 0 0 7 0 0 2 0 0 0 4 0 3.363722e-06 7.282284e-07 20.8333333333333 9.16666666666667 43.3333333333333 15.8333333333333 10.8333333333333 9.7144932 10.4735789 9.6779145 5.6228952 8.1692265 9.8256774 15.2838925 13.2375184 12.1862556 12.5206683 9.5097083 9.5472746 0.2653169 -0.7345631 8.9055895 9.6704859 11.3894659 6.7571980 11.1037607 -0.7345631 NA 11.2866716 10.6539001 NA 0.069669 -0.062495 0.037359 -0.794440 -0.758920 -0.761020 -0.741850 0.004719 -0.745950 -0.755380 -0.755380 -0.706300 -0.062495 0.037359 -0.746030 0.000000 -0.807410 -0.807410 -0.807410 0.012795 -0.706 -0.706 -0.698 0.000 0.000 0.000 -0.746 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.160 -0.160 -0.735 0.000 0.000 0.000 0.000 0.000 0.000 -0.746 0.000 0.000 0.000 0.000 -0.743 -0.746 -0.166 -0.166 -0.706 -0.706 -0.698 0.000 0.000 0.000 -0.746 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.160 -0.160 -0.735 0.000 0.000 0.000 0.000 0.000 0.000 -0.746 0.000 0.000 0.000 0.000 -0.743 -0.746 -0.166 -0.166 8.7410779 8.9271225 10.8694345 13.1977439 -0.7345631 9.4252159 9.7928215 9.5227324 9.7491603 2.7247812 3.9091971 4.9657843 12.8411201 8.8855643 7.1662113 NA 5.2426254 7.4796639 NA 0.2653169 12.41521 11.05447 11.1714836 12.3133205 0.2653169 11.5782275 9.7144932 9.6250942 10.3076880 10.4735789 6.5227322 10.6261916 14.1023318 7.3042637 4.6916067 9.7918439 8.8408840 10.3868781 14.3908388 2.9657843 8.9657843 5.0202310 4.4352685 11.0038591 10.7829992 9.0565074 9.2397591 11.7119110 8.7451247 6.4551694 8.8937353 8.7908655 8.2107882 11.3774582 6.3206273 4.9092019 10.5274394 9.3842856 12.9924141 10.1479876 8.9360010 6.8726749 10.5239106 2.4352819 4.7247758 2.7247812 3.1722315 10.4433869 9.6937047 9.0807277 NA 9.8218507 8.4427640 9.0168885 8.3101483 10.4989643 8.5530571 1.8503194 9.0646261 NA 6.7810449 8.6789726 8.9055895 9.7937889 4.3528080 9.4163612 9.6063073 4.3097364 8.5782274 9.4893462 11.1021839 10.7113940 9.8983397 10.7996474 10.2238973 7.0662442 7.6228967 7.1418619 8.0135376 6.5507468 6.1842069 9.3124685 0.8503194 NA -0.7345631 NA 11.3884022 8.9395369 11.0471141 3.7889049 7.9623119 7.9128031 7.2019827 7.2137118 9.1124020 TCGA-W5-AA2J 66 0 NA 916 bile duct stage iva t4 n0 m0 female 2012 no cholangiocarcinoma; hilar/perihilar r0 white not hispanic or latino NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCGA-W5-AA2K 75 1 833 NA bile duct stage i t1 n0 m0 female 2008 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCGA-W5-AA2M 49 1 540 NA bile duct stage ivb t3 n0 m1 male 2006 no cholangiocarcinoma; hilar/perihilar r0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCGA-W5-AA2O 57 1 640 NA bile duct stage i t1 n0 m0 male 2006 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 3 2 3 4 5 4 2 4 2 5 0 0 0 4 0 0 4 4 0 0 4 0 0 0 0 0 0 0 6 0 0 0 0 0 0 4 0 4 4 0 0 0 4 0 0 0 0 0 6 0 2.617837e-06 8.633291e-07 8.46153846153846 12.3076923076923 60 13.0769230769231 6.15384615384615 10.0153926 10.2991587 10.2755481 8.5346095 8.2559968 9.9192289 15.6262849 14.4161255 11.8603019 12.3322100 9.7786748 10.0273466 NA 0.6911768 8.1963621 9.3612780 9.6090814 6.9704361 10.1362269 NA NA 7.9454532 10.4405228 -0.8937857 0.0265140 -0.0726750 0.0328450 -0.7989500 -0.7281500 -0.7250900 -0.6588200 0.0535210 -0.6947700 0.0029133 0.0029133 0.3528300 -0.7440700 -0.0194960 -0.6650400 0.0321400 -0.7530500 -0.7530500 -0.7530500 -0.0215710 0.000 0.000 0.000 -0.631 0.000 0.000 -0.665 0.000 0.000 0.000 0.000 -0.228 0.563 0.000 0.000 -0.109 -0.109 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.725 0.000 -0.675 -0.675 0.000 0.000 -0.695 -0.695 0.426 0.426 -0.728 -0.728 0.000 0.000 -0.231 -0.231 0.000 0.000 0.000 -0.631 0.000 0.000 -0.665 0.000 0.000 0.000 0.000 -0.228 0.563 0.000 0.000 -0.109 -0.109 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.725 0.000 -0.675 -0.675 0.000 0.000 -0.695 -0.695 0.426 0.426 -0.728 -0.728 0.000 0.000 -0.231 -0.231 2.5656703 9.3446543 7.9949926 13.6985313 NA 9.3835369 9.8510833 9.7901214 9.7080203 2.2761691 6.1937126 7.4100298 15.3994876 9.8256383 11.6451659 NA NA 4.6298112 0.1062143 NA 12.471495 6.373036 11.2147740 13.2263253 NA 11.1115232 10.0153926 8.8628059 10.6307912 10.2991587 2.4281692 8.3870204 12.8593618 8.6627556 3.6298112 10.1034289 8.3518023 10.6424967 13.7715854 6.6531446 8.9750721 6.4812893 3.5656825 10.5049932 11.4632433 9.2585342 8.9595589 10.0450940 8.5799551 7.1006024 9.1930889 9.5718160 8.8239261 13.5148446 3.4985700 6.6987061 10.2604347 9.7581981 12.2229183 10.0494970 9.4921120 8.0703883 11.1803909 3.1143337 7.8307636 2.9136075 7.9359724 12.6978887 8.3612780 9.9063405 -0.8937857 10.9152137 9.1048398 9.5377470 8.1393697 11.0097548 9.0310621 4.0604452 10.7315017 0.1062143 7.4145888 8.7301311 8.1963621 9.2227623 5.3916509 9.2042816 9.2985424 2.5656703 6.6531446 10.8053882 11.6410387 9.9136044 10.3683444 9.9095735 9.8586302 9.2016466 5.0835283 6.8341702 8.5940894 10.9642305 3.4985700 9.2199918 -0.8937857 NA -0.8937857 NA 12.2957745 8.2509076 10.9043162 -0.8937857 8.3962683 8.6968365 6.5408782 7.9919458 9.4315549 TCGA-W5-AA2Q 68 0 NA 50 bile duct stage ii t2b n0 m0 male 2006 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 1 3 3 4 6 6 3 2 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.95324e-06 1.179036e-06 10.6666666666667 11.3333333333333 62 9.33333333333333 6.66666666666667 10.6930463 10.6605155 9.6578659 8.6654233 7.6848889 9.6380297 13.9925430 15.1052202 11.7535068 11.9230772 9.7121454 10.9304664 2.2224646 -1.2368434 9.9779745 10.3142759 9.9797941 7.8157253 10.7270280 -1.2368434 -1.2368434 11.6395652 9.4230440 0.3480057 3.6569000 -0.0094046 -0.0100940 -0.9619300 -0.0034627 -0.0034627 -0.9470000 -0.0056757 0.0102850 0.0718220 0.0718220 -0.0287650 -0.0096806 -0.0100940 -0.0040162 -0.0052610 -0.0052610 -0.0052610 -0.0052610 -0.0246610 0.845 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.868 0.000 0.000 0.000 0.000 -0.938 0.000 0.000 0.000 2.931 0.292 0.292 0.000 0.000 0.000 0.825 0.000 0.000 0.000 0.000 0.000 0.000 0.833 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.165 0.165 0.845 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.868 0.000 0.000 0.000 0.000 -0.938 0.000 0.000 0.000 2.931 0.292 0.292 0.000 0.000 0.000 0.825 0.000 0.000 0.000 0.000 0.000 0.000 0.833 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.165 0.165 1.7630291 6.6578658 8.4669517 14.3868440 NA 9.9966680 9.1671253 9.9203951 10.0192570 -0.2370134 -0.2370134 2.8505194 10.1734996 4.0109767 0.3480057 2.2224646 NA 6.8923315 0.3480057 3.8923327 13.74807 12.96318 11.6447358 11.4084815 4.0109767 12.3469537 10.6930463 10.1255400 10.6646694 10.6605155 3.6210321 10.4082563 12.6381256 9.5476831 5.1893146 11.0931248 10.0192570 8.9663961 13.7962561 9.2817015 6.5895972 6.0484498 5.4354752 12.0586737 12.7500351 9.9725015 8.9578052 11.6614607 10.2929668 7.8663362 7.2532575 8.4909688 7.6548322 13.2033984 6.5509514 7.5476827 9.4014841 11.1045670 12.7157895 10.0776314 10.5083024 7.9329730 10.5538040 3.9329777 10.0097889 2.6699338 7.8689565 11.9232348 10.6989500 9.9828218 1.0849487 6.8291379 9.2428285 10.1134350 11.1977547 12.2237601 9.3960434 4.6937880 11.3733811 2.8505194 9.0157136 8.5476831 9.9779745 9.4707697 4.2224800 10.9448217 10.6057915 3.2224800 3.1553607 11.5503387 11.9820655 11.0233798 9.0565199 10.2992955 11.0330515 8.8047073 4.0484542 7.4600160 10.1887886 9.4230440 NA 10.6380296 -0.2370134 1.5704144 NA -0.2370134 11.5444674 10.4434077 12.0183719 0.3480057 9.4212597 9.1275768 7.4495490 8.1337356 9.9978657 TCGA-W5-AA2R 77 0 NA 1542 bile duct stage i t1 n0 m0 female 2006 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 2 1 2 2 3 2 1 1 1 3 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.051624e-06 9.016161e-07 15.7894736842105 5.26315789473684 61.4035087719298 9.64912280701754 7.89473684210526 10.749663 8.696764 9.924661 9.189297 8.526236 9.695960 14.527113 15.797261 10.513053 12.065376 9.810385 10.235975 2.472774 -1.112163 9.258488 10.464285 10.155172 8.574668 10.881446 2.057728 -1.112163 11.529175 9.965284 1.209703 0.68291000 -0.00912860 -0.00912860 -0.57170000 -0.60022000 -0.60785000 -0.60284000 0.00019634 0.00652620 -0.00156830 0.00597000 -0.59857000 -0.00912860 -0.00912860 -0.60061000 -0.00207840 -0.59731000 -0.59731000 -0.59731000 0.02721600 0.000 0.000 0.000 0.000 0.000 0.000 -0.601 0.000 0.000 0.000 0.000 -0.483 0.000 0.000 0.000 0.000 0.000 0.000 0.680 0.000 0.000 0.000 -0.577 0.000 0.000 -0.600 0.000 -0.600 -0.600 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.273 0.000 0.000 -0.103 -0.103 0.000 0.000 0.000 0.000 0.000 0.000 -0.601 0.000 0.000 0.000 0.000 -0.483 0.000 0.000 0.000 0.000 0.000 0.000 0.680 0.000 0.000 0.000 -0.577 0.000 0.000 -0.600 0.000 -0.600 -0.600 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.273 0.000 0.000 -0.103 -0.103 3.6951587 8.5442253 8.5207954 14.3688113 NA 9.9845154 11.5648592 9.4259892 9.3716161 NA NA 3.2097341 13.6234621 4.9101666 NA -1.1121628 4.3472333 5.5171560 0.4727997 1.4727477 12.860462 7.581287 10.5734252 12.7527602 3.0577275 12.6181643 10.7496626 10.9548985 9.8600622 8.6967645 7.9239740 9.9897760 13.2212352 6.8126125 6.6292677 9.8499733 9.8629318 10.0419856 13.2639257 8.8835674 8.3451812 9.4481332 7.1118023 11.4123420 11.6997509 11.0614774 9.6123142 11.4179628 10.2018170 7.9884626 7.6985005 9.3786512 7.3224284 12.6285297 6.6493510 8.7841326 8.3119667 10.4342125 12.7792043 10.0788596 9.9356059 7.8990276 12.0946621 7.6339114 10.7666176 5.0972526 8.1545868 12.0770071 8.8126128 9.9525431 0.4727997 8.7442257 9.1380987 9.8332442 9.8129022 11.9366277 10.3130162 5.6292663 10.5370565 5.7946914 9.3472320 8.6967645 9.2584878 10.0860243 7.0216618 11.1496014 9.5334588 8.9805575 6.0067423 10.5729871 12.0241507 10.2758176 10.0400852 10.9828676 10.3721197 10.3088132 6.7015809 6.7643170 9.7481113 9.4123420 3.4113584 8.9511955 3.1357319 -1.1121628 NA 6.5244242 11.1395519 9.9585922 10.9599329 3.9321935 9.0170834 8.1495896 8.4404693 9.0362769 10.4172309 TCGA-W5-AA2T 64 1 1220 NA bile duct stage ii t2 n0 m0 female 2008 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 3 3 NA NA 6 5 3 2 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.39275e-06 1.179036e-06 24.0384615384615 5.76923076923077 49.0384615384615 13.4615384615385 7.69230769230769 10.543509 10.628933 9.600417 8.189872 7.597714 9.853215 14.599179 13.736351 10.824993 11.847539 9.757989 10.056490 NA NA 9.059767 9.465611 10.507007 8.115217 10.710415 NA NA 10.738084 10.617416 NA 0.717350 3.656900 0.039902 -0.865150 -0.835430 -0.830410 -1.292900 0.050392 -0.834780 -0.839620 -0.849820 0.031295 -0.863420 0.039902 -1.288900 -0.818680 -0.838430 -0.838430 -0.838430 0.040609 0.000 0.000 -0.834 -0.834 0.000 0.000 -0.360 -0.819 0.000 0.000 0.000 0.000 0.000 0.437 0.437 0.000 0.000 0.000 0.693 0.000 0.000 0.000 0.000 0.000 0.000 -0.819 -0.819 0.000 0.000 0.000 0.000 0.000 -0.820 -0.373 -0.373 0.000 0.770 -0.850 -0.850 -0.204 -0.204 0.000 0.000 -0.834 -0.834 0.000 0.000 -0.360 -0.819 0.000 0.000 0.000 0.000 0.000 0.437 0.437 0.000 0.000 0.000 0.693 0.000 0.000 0.000 0.000 0.000 0.000 -0.819 -0.819 0.000 0.000 0.000 0.000 0.000 -0.820 -0.373 -0.373 0.000 0.770 -0.850 -0.850 -0.204 -0.204 1.76120016 7.84867614 10.35153282 13.82431927 NA 8.83190922 10.19285992 9.12127630 9.28141080 -0.04617605 1.53883611 2.76122144 12.57648206 4.12378206 6.18267641 NA NA 7.39264972 NA NA 16.13329 10.78556 11.15690029 12.37631725 -1.04602709 11.40119979 10.54350932 8.95667323 9.23230771 10.62893313 4.73521888 10.25649720 12.93113814 9.17060411 3.76121080 10.67837205 8.58503539 8.88163617 14.26876005 7.95103754 7.56856800 5.50844767 6.18267641 10.33540119 11.59747996 10.17544538 8.07797944 10.48718796 8.84715979 5.49301640 9.73218999 9.10741012 8.64035883 13.08740184 6.32889748 5.46165297 8.51610066 10.37118333 12.38090912 8.73193535 9.21595301 7.83955465 10.76683771 3.20784601 8.01185005 -0.04617605 5.44571015 11.18627912 11.09276996 9.04397054 0.53883611 7.61206936 8.47937892 8.94538004 9.74643706 11.42146375 7.89049594 5.01994649 10.35473766 1.27578184 7.52750516 8.64210839 9.05976680 8.49694802 5.29370890 11.06890186 9.93542557 3.95386119 7.01994761 10.32454568 11.75698027 10.37907409 9.73357754 9.62716724 10.23810399 8.50075267 2.86074434 5.97622614 9.47545864 9.45569545 3.41329620 9.91964250 NA NA -0.04617605 NA 10.14137110 8.39265015 10.88865483 0.53883611 9.21830071 7.93685168 8.87421109 7.45370441 9.37487103 TCGA-W5-AA2U 78 1 627 NA bile duct stage i t1 n0 m0 female 2010 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 4 3 2 3 3 3 3 2 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4.681468e-06 1.179036e-06 13.7931034482759 8.04597701149425 56.3218390804598 13.2183908045977 8.62068965517241 10.3260618 10.3361436 9.8104765 10.8021362 7.1009692 9.5762239 15.0049594 15.8953988 11.4072025 12.6256616 9.7952098 10.6370219 0.8483175 NA 8.3501405 10.0100652 11.4072025 8.0081748 11.1406252 -0.1516825 NA 10.4570204 10.6189674 1.6556724 0.0063871 -0.0052610 0.0118180 -0.7988600 -0.7844600 -0.7844600 0.0196430 -0.0142280 -0.7897500 -0.7850500 -0.7850500 0.0100060 -0.7972000 -0.7900100 -0.7812500 -0.7877400 -0.7921800 -0.8023600 -0.8023600 0.0037465 0.000 0.000 0.000 0.000 0.000 0.000 -0.781 -0.779 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.785 0.000 0.691 0.000 -0.784 0.000 0.000 0.000 0.000 0.000 0.000 -0.769 0.332 0.000 0.000 0.000 -0.785 -0.785 -0.189 -0.189 0.000 0.000 0.000 0.000 0.000 0.000 -0.781 -0.779 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.785 0.000 0.691 0.000 -0.784 0.000 0.000 0.000 0.000 0.000 0.000 -0.769 0.332 0.000 0.000 0.000 -0.785 -0.785 -0.189 -0.189 3.5487449 6.2576952 8.7521853 13.3259985 NA 9.3728453 9.4000119 9.4247880 9.8212832 -1.1516825 -1.1516825 2.6556495 11.4687525 3.4921608 1.6556724 NA -1.1516825 6.4105463 -0.1516825 1.1702456 12.14395 11.87811 10.588928 10.581319 0.433280 11.963997 10.326062 10.199795 10.410069 10.336144 6.340156 8.340157 12.679809 8.870671 5.946336 9.489452 9.388432 8.946336 13.331741 8.805406 7.124428 9.373824 5.534806 11.220897 11.700037 10.267210 9.304658 10.596916 9.590613 7.179220 8.770278 8.457482 7.796670 12.665187 5.693794 7.706285 9.038128 10.164019 11.918424 9.642719 9.590613 7.502939 11.986735 4.733636 10.907310 4.603193 9.480390 11.543314 8.399050 9.303631 NA 10.260344 8.618141 9.592296 11.448662 11.425260 8.866504 8.527783 10.303117 5.534806 8.270368 8.161186 8.350141 8.449851 7.887222 11.185925 9.732474 6.018229 7.629663 10.599429 10.553936 10.299515 10.071702 10.017602 9.993599 9.251316 6.223343 7.344158 9.468523 9.826299 2.018242 9.255571 1.655672 NA 0.433280 2.018242 11.780319 9.719439 11.026034 0.433280 8.601520 8.471746 8.214626 7.527783 9.550476 TCGA-W5-AA2W 31 1 924 NA bile duct stage iva t2a n1 m0 female 2010 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 2 3 3 4 2 7 4 3 5 4 0 7 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 2.670171e-06 5.201631e-07 16.1290322580645 5.37634408602151 65.5913978494624 9.67741935483871 3.2258064516129 10.43754163 8.23424359 9.91311306 8.70500472 8.04923868 10.32994385 14.54115604 15.89968314 10.08224034 12.62181095 9.70131513 10.75213231 -0.90779256 1.67707971 8.91868498 10.39248895 9.42081122 7.53092831 11.01769083 0.09207209 0.09207209 11.50549986 10.17959925 NA 1.30100000 -0.00792710 0.00291330 -0.87799000 -0.87331000 -0.82236000 -0.80003000 0.03778200 0.01530800 -0.82122000 -0.01725400 -0.84355000 -0.00069303 0.00291330 0.05380600 0.00000000 0.00000000 0.00000000 0.00000000 -0.04061600 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.712 0.000 0.000 0.000 0.000 0.000 0.000 0.431 0.579 0.000 2.097 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.800 0.000 0.000 0.000 -0.818 0.000 0.000 0.000 0.000 -0.804 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.712 0.000 0.000 0.000 0.000 0.000 0.000 0.431 0.579 0.000 2.097 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.800 0.000 0.000 0.000 -0.818 0.000 0.000 0.000 0.000 -0.804 0.000 0.000 0.000 2.551565 10.329944 9.527807 14.238785 NA 10.692514 9.727854 10.550543 9.905116 NA 2.999026 3.615699 9.239341 2.677102 5.241882 3.551565 NA 6.639031 6.423054 NA 13.52937 10.55310 11.54076897 11.53559800 0.09207209 12.58398948 10.43754163 10.93841033 10.20261974 8.23424359 5.35892367 9.49408254 13.09099122 10.98922553 3.55156523 10.69344296 10.35305594 9.06655099 13.82064155 8.70868525 7.16359836 7.97783285 5.58398835 11.24093071 12.17760553 10.24758709 8.81152530 11.52624335 10.09072682 7.07513040 8.15515369 8.82853829 8.05792080 12.00614771 4.30158765 8.67333699 8.30888233 10.64624557 12.29670753 9.69018886 11.18059340 8.55156793 11.48337998 4.45460364 10.50099679 4.37754025 9.11311625 12.02342794 8.51209649 10.43698704 0.09207209 6.06941647 9.25704339 9.15012806 9.72801777 10.67333699 10.12624759 8.36359951 9.64480553 0.09207209 9.30037087 8.50576432 8.91868498 9.54409952 6.40501889 10.87963088 9.14334546 3.95011376 5.98695469 10.73373657 11.90651857 9.92423531 9.82515167 11.45845860 10.21172601 9.36826090 5.04633390 6.63903097 7.89626761 7.77513089 NA 9.41293688 NA 0.67707971 NA 1.41408140 11.09415318 10.44528318 10.41856588 -0.90779256 8.78562346 7.99553653 7.48874154 8.14470463 10.04487767 TCGA-W5-AA2X 67 1 271 NA bile duct stage ivb t2b n1 m1 male 2010 no cholangiocarcinoma; hilar/perihilar rx white not hispanic or latino 2 1 1 1 1 1 3 2 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 4.334693e-06 1.075004e-06 14.375 5.625 63.75 9.375 6.875 10.3106809 10.2400017 10.4302098 10.0648169 8.8463140 9.4774466 15.4161864 11.1243318 12.9160748 11.5296744 10.6999866 10.5646058 NA 8.8606376 10.1624725 9.7925427 5.1167931 7.7184897 9.2314542 NA NA 12.0443969 10.1961211 -0.9705825 0.824670 2.679000 3.486600 -0.762800 -0.527670 -0.527670 -0.517020 -0.536750 0.381380 -0.049695 -0.049695 0.051387 -0.539560 -0.443830 0.429430 -0.022606 -0.022606 -0.022606 -0.022606 -0.026030 -0.534 0.000 3.657 3.138 0.045 -0.444 0.456 0.000 0.426 0.000 0.000 0.412 0.412 0.000 0.000 -0.497 0.000 -0.380 0.444 0.413 0.413 0.000 0.420 0.405 0.407 -0.528 0.466 -0.512 -0.512 -0.060 -0.522 0.381 0.381 0.452 0.452 0.416 0.951 0.000 0.000 0.000 0.000 -0.534 0.000 3.657 3.138 0.045 -0.444 0.456 0.000 0.426 0.000 0.000 0.412 0.412 0.000 0.000 -0.497 0.000 -0.380 0.444 0.413 0.413 0.000 0.420 0.405 0.407 -0.528 0.466 -0.512 -0.512 -0.060 -0.522 0.381 0.381 0.452 0.452 0.416 0.951 0.000 0.000 0.000 0.000 8.2216234 6.4130355 7.1114790 11.8871170 NA 10.4897863 7.5723622 10.3478732 10.2240872 -0.9705825 2.7297703 4.6731889 10.6194495 6.0846128 6.3956524 6.5839192 NA 5.2387830 NA 1.8366917 14.15990 13.76462 12.05775449 11.06034231 NA 11.30516389 10.31068094 10.00302775 10.81069011 10.24000169 7.19423778 8.45559518 12.13114193 8.02368395 3.61429759 10.81069011 8.46395875 9.68307110 12.79160859 7.72281709 10.18351554 3.48875921 4.19925616 11.19956843 13.37035849 7.79420205 9.18667734 11.07338291 10.34107866 7.05169837 9.83602494 8.58199930 9.09272543 8.19674866 5.86222076 5.79751368 8.45349659 9.21172480 12.33823818 10.31299750 10.47847903 8.21915496 10.07304122 1.83669169 6.49693524 3.27725578 10.55582957 11.88185990 7.77079734 10.32050104 0.61428581 3.88731080 8.79088149 9.59918592 8.21035818 9.92490571 9.64035521 3.19924831 11.35463585 -0.97058245 7.85587885 8.46395875 10.16247253 9.41416810 10.31946439 10.81764084 8.57042688 3.61429759 5.83668412 10.23634468 10.99799715 10.42593518 9.38688228 9.90891361 10.25754778 7.76742241 3.72977027 4.98352722 8.53315605 11.65686426 0.02927618 9.63943242 -0.97058245 1.35123255 -0.97058245 0.02927618 11.80510113 8.73668943 10.66504850 -0.97058245 9.23878376 8.66368760 8.21420594 7.83346128 9.73755208 TCGA-W5-AA2Z 29 0 NA 1614 bile duct stage ii t2 n0 m0 female 2010 no cholangiocarcinoma; intrahepatic r1 white not hispanic or latino 3 3 3 4 6 6 1 5 1 1 0 0 0 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 0 0 4 0 0 0 0 0 0 0 0 2.635493e-06 8.32261e-07 16.8316831683168 11.8811881188119 49.5049504950495 13.8613861386139 7.92079207920792 10.232562 9.833284 10.077648 9.324136 7.833285 9.183119 14.187568 13.700960 10.863952 11.396957 10.027426 10.550533 -1.166827 1.640621 9.164201 10.001957 11.188636 8.382107 11.075566 1.640621 2.155199 10.946376 10.147868 1.155231 0.603300 -0.042110 0.598180 -0.673400 -0.670950 -0.670950 -0.660310 0.612080 -0.673430 -0.005261 -0.005261 -0.682050 -0.042110 0.598180 -0.667260 -0.068663 -0.068663 -0.068663 -0.095516 -0.673160 0.608 0.608 0.000 0.000 0.598 0.598 -0.667 0.000 0.000 0.000 -0.656 0.000 0.000 0.000 0.000 0.000 0.000 0.570 0.570 0.000 0.000 -0.673 0.000 0.000 0.000 -0.651 0.000 0.000 0.000 0.612 0.612 0.000 -0.644 0.000 0.000 0.604 0.604 0.000 0.000 0.000 0.000 0.608 0.608 0.000 0.000 0.598 0.598 -0.667 0.000 0.000 0.000 -0.656 0.000 0.000 0.000 0.000 0.000 0.000 0.570 0.570 0.000 0.000 -0.673 0.000 0.000 0.000 -0.651 0.000 0.000 0.000 0.612 0.612 0.000 -0.644 0.000 0.000 0.604 0.604 0.000 0.000 0.000 0.000 4.8993738 8.0057121 8.7371665 13.2548235 NA 9.7610625 10.7517752 9.9689939 10.0249607 0.4182439 1.1552311 2.1551987 13.7860713 6.1908361 4.3878726 NA NA 6.1461685 NA NA 11.82971 10.42808 11.095673 11.487025 -1.166827 12.175220 10.232562 10.281401 9.946376 9.833284 6.062102 10.031116 13.026117 9.196324 5.190836 9.292716 9.491496 10.164201 12.214287 10.341079 8.741677 6.988103 6.758097 11.350954 11.967538 9.065706 8.863952 11.518471 10.059697 7.348985 7.274071 9.093028 7.037856 10.501283 4.505707 7.700563 10.412601 9.838207 12.244663 10.313570 9.858424 7.790386 10.091851 5.237575 11.471268 4.081212 8.766975 12.765868 8.811995 9.769186 1.640621 9.141624 8.827638 9.836100 12.232167 11.469683 10.006962 5.972835 10.039688 5.403142 9.119842 8.313065 9.164201 8.879099 8.579799 11.193309 10.508360 2.292723 6.957406 10.948328 12.493615 9.961923 9.249026 10.276228 10.357336 9.628512 5.588172 6.003209 9.564604 9.517156 5.387873 9.612183 NA NA -1.166827 -1.166827 11.242386 10.699791 10.429474 NA 8.833284 8.011451 6.164201 8.025578 9.806264 TCGA-W5-AA30 82 0 NA 1153 bile duct stage i t1 n0 m0 male 2010 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 4 3 3 3 3 3 1 2 1 3 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 7 0 0 7 0 5 0 0 0 4.09195e-06 1.525812e-06 14.6341463414634 9.75609756097561 48.780487804878 14.6341463414634 12.1951219512195 10.88754675 10.23339475 10.14585867 8.93297828 7.63607861 9.62540530 14.50003677 14.44689866 12.17375039 11.48264730 10.24912388 10.76485534 5.19601288 1.28912622 9.09002188 9.91117369 9.68143943 8.70987372 10.16502480 1.77454461 -0.03283139 11.47226106 10.00953725 1.28912622 1.92990 0.97275 0.00000 -0.52287 -0.49016 -0.48722 -0.52256 -0.80260 -0.49715 -0.49809 -0.49809 -0.49267 -0.49705 0.00000 -0.49350 -0.49673 -0.49673 -0.49673 -0.49673 -0.22244 0.000 -0.215 0.000 -0.497 0.000 0.000 0.000 -0.497 -0.161 -0.230 -0.230 0.000 0.000 0.000 0.000 0.000 0.000 0.361 0.361 0.273 0.273 -0.500 0.279 0.000 0.000 -0.490 0.000 0.000 0.000 -0.218 -0.218 0.000 -0.497 0.000 0.000 -0.379 0.090 -0.498 -0.498 -0.122 -0.122 0.000 -0.215 0.000 -0.497 0.000 0.000 0.000 -0.497 -0.161 -0.230 -0.230 0.000 0.000 0.000 0.000 0.000 0.000 0.361 0.361 0.273 0.273 -0.500 0.279 0.000 0.000 -0.490 0.000 0.000 0.000 -0.218 -0.218 0.000 -0.497 0.000 0.000 -0.379 0.090 -0.498 -0.498 -0.122 -0.122 4.324746 8.124541 7.930090 13.570357 -1.032684 9.432760 9.644033 9.353056 9.701057 1.774545 6.498575 6.806398 11.589017 9.517941 NA NA 4.490756 5.307042 NA -1.032684 13.21925 12.58879 11.0990508 12.5547370 4.1371182 11.7413632 10.8875467 9.7825771 9.8375586 10.2333947 7.3335159 9.9622543 13.0984882 8.5559085 6.4749892 9.8770870 9.0913150 9.1948098 13.2069415 9.5160157 6.0440093 9.2514396 7.1570184 11.1169410 12.1143749 9.8228410 8.8710757 10.9710631 9.7052861 7.5782187 8.7595936 8.1570184 8.0224766 11.2157144 6.5521557 8.4347996 8.3159221 10.1022618 12.3184092 9.7953303 9.5726733 8.1619506 11.1396214 6.2669514 9.5947277 4.3595141 8.3508981 11.2453529 9.9501874 9.5502766 0.9671686 9.1258035 8.6110499 9.7745487 12.3597152 11.5155341 9.0757182 6.3159212 9.9544579 4.8740838 7.7873730 8.4225211 9.0900219 9.1037108 6.6520132 10.6087941 9.8024548 8.9643732 6.6396185 10.5465098 11.5851204 10.5174597 9.4946708 9.6020049 10.3882068 10.1514494 5.9784222 7.7583565 9.2778067 10.1402463 1.7745446 8.9329783 -1.0326838 0.2302030 6.1668661 6.0440093 10.9384716 9.5800624 11.2803603 2.6676424 9.0625910 7.8483688 8.0143179 7.4590471 9.8483078 TCGA-W5-AA31 71 0 NA 10 bile duct stage i t1 n0 m0 male 2010 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 1 1 1 4 5 4 4 6 5 4 0 7 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 3.537109e-06 8.32261e-07 13.4920634920635 12.6984126984127 57.9365079365079 7.14285714285714 8.73015873015873 11.3403973 9.2355248 10.0739390 8.9685862 7.9908063 10.7132086 13.9017162 14.2807969 12.0217102 11.9185453 9.7882270 11.0188812 NA -1.4332335 9.7023492 9.8874404 11.1707298 7.9017177 10.3323404 0.8885387 -0.4334284 10.4168268 9.6862295 6.2176921 0.375280 -0.372680 0.369200 -0.430610 -0.365670 -0.361470 -0.786560 0.416300 -0.366350 0.000000 0.000000 -0.390290 -0.372680 0.369200 0.013911 -0.012851 -0.012851 -0.012851 -0.012851 -0.015604 0.375 0.000 -0.373 -0.373 0.369 0.369 0.000 0.000 -0.392 0.000 0.000 0.000 0.584 0.379 0.004 0.625 0.625 0.375 0.375 0.342 0.342 0.000 0.318 0.000 0.000 -0.361 -0.361 -0.359 -0.359 0.416 0.416 0.370 -0.014 0.000 0.000 -0.391 -0.016 0.000 0.000 0.000 0.000 0.375 0.000 -0.373 -0.373 0.369 0.369 0.000 0.000 -0.392 0.000 0.000 0.000 0.584 0.379 0.004 0.625 0.625 0.375 0.375 0.342 0.342 0.000 0.318 0.000 0.000 -0.361 -0.361 -0.359 -0.359 0.416 0.416 0.370 -0.014 0.000 0.000 -0.391 -0.016 0.000 0.000 0.000 0.000 4.4973760 5.6751639 9.1776647 13.6013529 NA 9.9892303 9.7119352 9.7527541 10.0224809 0.8885387 7.7613970 7.9525025 16.3994125 10.1918921 12.6805448 NA -1.4332335 4.8145658 -1.4332335 -1.4332335 12.306128 9.536026 11.7681512 12.7142423 0.8885387 12.1206291 11.3403973 9.2817439 9.5453505 9.2355248 4.9241902 10.2540156 12.4109534 8.2513887 5.7954579 10.0489437 9.6790794 8.5410544 14.6448950 9.4323732 7.0783921 7.3081069 6.4855025 11.4024929 12.7545247 9.6914075 8.1795086 11.1532452 10.8053432 7.4339184 7.9886836 9.2705434 7.6381021 12.0209392 4.0902014 9.0744345 10.4754078 10.7437480 11.9866001 9.9976150 10.9078808 7.8002593 11.4561438 5.5549848 10.6956008 4.7163874 8.3979471 12.1473695 9.3438952 10.1525414 1.8885777 7.1590973 8.9717815 10.2333077 11.4913726 11.1264950 9.6875258 5.3081060 10.4595622 0.8885387 8.8795229 8.5624069 9.7023492 9.4399455 6.3901982 11.4119339 10.2826019 5.5091543 7.4026906 10.1637614 12.2925387 10.5025415 9.8738407 10.0489437 10.8503070 9.7809590 5.9929044 4.9929044 9.1795083 8.3691563 2.0260564 9.4026902 0.5666691 5.7365643 0.1515991 1.7365616 11.6940749 10.2279727 10.8689932 NA 9.4416212 8.2540157 6.7663129 7.6855807 9.4508104 TCGA-W5-AA33 60 0 NA 1449 bile duct stage i t1 n0 m0 male 2011 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 1 1 2 2 5 4 1 6 1 5 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.219363e-06 6.241958e-07 18.0722891566265 4.81927710843374 55.421686746988 14.4578313253012 7.2289156626506 11.4221626 10.3484509 9.7118960 8.8833624 8.5003488 10.0418034 14.2440231 13.9838131 11.7841503 11.0643610 10.0928549 10.9219891 NA -1.0752160 9.7257096 10.6139341 10.7951744 8.1751079 10.1933516 NA 2.5097718 10.9120737 10.3373795 0.5097465 0.36756000 -0.00041585 0.00069327 -0.42042000 -0.39241000 0.02777800 0.01084200 0.00903120 -0.38772000 -0.37448000 -0.39597000 0.00346870 -0.00041585 0.00069327 -0.38381000 -0.00069303 -0.00069303 -0.00069303 -0.00069303 -0.00830050 0.000 0.000 0.000 0.000 0.000 0.000 -0.384 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.305 0.305 0.000 0.368 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.390 -0.390 0.000 -0.389 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.384 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.305 0.305 0.000 0.368 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.390 -0.390 0.000 -0.389 0.000 0.000 3.24674250 7.44837157 9.32141449 13.80969565 -1.07521599 10.01558371 9.85776255 9.82492168 10.25964159 2.92480300 6.65273027 7.46396815 14.89048125 9.03333407 12.44714601 -1.07521599 -0.07521599 4.73216607 -1.07521599 -1.07521599 14.568215 8.513524 11.2754727 13.1933517 2.9248030 12.1260147 11.4221626 10.8614476 9.8082167 10.3484509 7.7028868 11.2551664 13.4863960 9.8112684 6.9527156 10.4731500 9.9013738 9.4918150 14.4142814 9.2113676 6.9800916 8.3405516 7.4166624 11.8851737 12.2537580 10.6612116 9.0553803 11.6607887 10.5107112 8.4542401 7.8936207 8.6612116 7.4870522 12.7570074 5.8905950 8.6493234 10.3687892 10.7377892 12.2354225 9.8451626 10.2102119 8.1171023 11.4199152 6.3270550 11.3413434 5.3510735 9.5284359 11.7736282 9.9262179 9.8488798 0.5097465 9.9915716 8.5228620 10.0713784 10.5018372 11.2142523 9.5596207 8.9177480 10.5233275 6.6863605 9.3447699 8.5172666 9.7257096 9.4269951 8.9346383 10.4697741 11.8654903 8.2285902 6.3426614 10.8851737 12.4820340 10.4360682 9.4326043 10.2867534 10.3775657 9.5990019 6.5172662 6.9304346 9.4126497 9.3563074 0.9247840 7.1342630 5.7951747 0.5097465 2.0947428 4.3510770 10.9498627 11.0897166 10.9430098 2.6252471 9.0528041 8.4577888 7.9444005 7.0643612 10.0372492 TCGA-W5-AA34 75 1 555 NA bile duct stage i t1 n0 m0 female 2012 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 3 2 1 1 6 6 4 5 2 4 0 0 4 0 0 0 0 4 0 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 3.398399e-06 7.629059e-07 15.702479338843 5.78512396694215 53.7190082644628 14.0495867768595 10.7438016528926 9.9775856 10.3889455 9.7015645 9.4141317 7.9145233 10.1027491 14.4215419 14.3242645 11.3375005 12.8277437 9.8250927 9.7174864 NA 2.2079241 8.3395026 9.4141317 11.7194644 7.0606516 10.1871183 -0.9621258 NA 11.0652212 11.0425779 5.0824003 0.7916200 -0.1192400 0.3244700 -0.9060900 -0.8905100 -0.8905100 0.0287630 0.0034687 -0.7550400 -0.5484400 -0.8734600 0.0083351 -0.4810200 0.3244700 -0.8802300 0.0097276 -0.8908900 -0.8945800 -0.8945800 -0.8893500 0.000 0.000 -0.119 -0.119 0.324 0.324 -0.880 0.000 0.000 0.000 -0.889 0.000 0.000 0.498 0.498 0.000 0.000 0.792 0.792 0.677 0.677 -0.886 0.000 0.000 0.000 -0.891 0.000 0.000 0.000 0.000 0.000 -0.046 -0.530 0.000 0.000 0.000 0.000 -0.548 -0.548 -0.126 -0.126 0.000 0.000 -0.119 -0.119 0.324 0.324 -0.880 0.000 0.000 0.000 -0.889 0.000 0.000 0.498 0.498 0.000 0.000 0.792 0.792 0.677 0.677 -0.886 0.000 0.000 0.000 -0.891 0.000 0.000 0.000 0.000 0.000 -0.046 -0.530 0.000 0.000 0.000 0.000 -0.548 -0.548 -0.126 -0.126 1.359915 7.822641 8.149142 13.858235 NA 8.771022 10.328601 9.164711 8.830797 2.497434 NA 1.038015 14.459052 4.247457 1.359915 NA NA 5.561567 NA NA 12.760609 9.830797 10.9294103 12.0721175 -0.9621258 11.3306155 9.9775856 8.4473974 10.3889455 10.3889455 5.3417865 9.9605908 13.3802894 7.4173850 3.8959908 8.8275399 8.6379192 10.6248461 12.3850740 7.0095498 6.5771644 7.6926427 3.3599287 10.8234588 11.3675224 8.6890580 8.5887532 10.6659961 8.5398435 6.2376784 7.1532581 7.9746440 7.1672897 13.3694831 4.9206506 7.1307631 10.2583847 9.9650436 12.4881866 8.8324223 8.9568695 7.9114507 10.2302991 5.7058977 6.3867351 2.8453696 6.5537061 12.1458772 9.8827121 9.4431479 NA 9.0337734 8.4410182 9.4923057 8.7184363 11.7786304 8.9568695 5.6229684 10.1267945 -0.9621258 6.9206494 7.9687434 8.3395026 8.7434487 5.7659272 9.7505333 8.7573950 3.8453596 7.3047930 9.9871035 11.2272132 10.0666031 9.8897554 10.1959847 9.7253819 8.8944319 6.2668259 4.3955564 9.1067846 9.2179153 1.3599147 9.5487705 -0.9621258 NA -0.9621258 -0.9621258 11.1448277 8.4195494 11.1848931 NA 8.0741800 8.4429775 6.6002489 7.5497593 9.0209999 TCGA-W5-AA36 51 1 1402 NA bile duct stage iv t3 n0 m1 female 2008 no cholangiocarcinoma; hilar/perihilar r0 white not hispanic or latino 2 2 3 4 2 5 2 4 2 2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.364104 9.055982 9.429440 8.254081 6.312758 9.919337 14.977089 15.761559 11.844930 13.075753 8.867791 5.862444 NA 4.062217 8.018014 9.172900 13.221302 6.766476 10.895540 NA NA 11.412162 10.602977 NA 0.7222500 -0.0041546 -0.0106460 -0.8418700 -0.8141700 -0.8141700 -0.8252100 0.0077783 0.0256710 -1.2929000 -0.0062286 0.0165650 -0.0041546 -0.0106460 0.0108420 -1.2929000 -0.8325200 -0.8325200 -0.8325200 -0.0107840 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.817 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.793 0.000 0.000 0.000 0.000 0.000 0.000 -0.810 0.000 0.000 0.000 0.000 0.000 0.000 -0.136 -0.136 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.817 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.793 0.000 0.000 0.000 0.000 0.000 0.000 -0.810 0.000 0.000 0.000 0.000 0.000 0.000 -0.136 -0.136 1.7891867 9.2252130 7.5879372 14.0519756 0.2042659 9.0591013 11.1039676 9.4221907 8.8189429 0.2042659 0.2042659 3.0115851 10.9094334 2.2042346 NA 3.1111315 3.3741631 4.4896328 0.7891867 -0.7958593 10.90380 10.17002 11.4375531 12.1743389 -0.7958593 11.6388613 9.3641044 8.9423254 10.6743835 9.0559822 3.7277898 9.3853853 12.1900750 5.8189426 4.8189426 9.4930991 8.2404069 10.3463401 13.0057393 7.7395086 1.5261690 6.7199323 5.8766594 10.3501652 11.2266009 8.4942520 8.9098655 11.0371231 8.3048952 5.3335168 7.8972320 9.5440831 7.1290460 13.4759149 5.8189426 7.2431521 9.2084536 10.6194467 12.5154137 9.4988538 9.2837179 7.3335159 11.3247950 5.2334663 4.5617844 3.9591210 8.8078595 8.7816620 9.4884789 9.7010869 -0.7958593 10.4977047 8.8078595 9.1452806 9.8867713 11.1562462 6.9790204 4.2486259 9.4942520 1.2042033 7.0929759 8.2349003 8.0180143 9.7072338 5.3940579 9.8444779 8.2943455 2.3741492 7.8872279 9.7636101 10.8449299 10.0123928 11.0963963 11.4759879 9.5803585 9.2956684 5.3335168 4.4521605 9.2554420 10.0465834 4.1584259 8.0244122 NA NA -0.7958593 NA 11.7317980 8.9389426 10.4745284 NA 8.1872269 8.2376560 7.4039051 8.7433918 9.6748919 TCGA-W5-AA38 55 0 NA 1471 bile duct stage i t1 n0 m0 female 2011 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 1 2 3 3 4 5 4 5 3 2 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 3.502432e-06 9.362936e-07 16.2790697674419 8.52713178294574 57.3643410852713 9.30232558139535 8.52713178294574 9.3885536 8.2656971 10.1655477 10.1439084 7.4900510 9.5315910 16.7873472 16.5289743 12.7717289 13.6724452 8.6772954 9.4228433 1.9665043 1.2884176 6.9090038 9.1124210 11.9451994 6.5885408 10.3588063 0.9665043 NA 10.4782416 10.2226976 6.2048939 0.0284810 0.0069435 0.0211830 -0.6992900 -0.6397000 -0.6397000 -0.6033200 0.0345360 -0.6120100 -0.6434000 -0.6434000 0.0461330 0.0069435 0.0061090 -0.6287500 -0.3096800 -0.3096800 -0.3096800 -0.3096800 -0.2960300 0.000 0.000 0.000 0.000 0.000 0.000 -0.629 -0.310 0.000 -0.296 -0.296 -0.658 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.599 0.000 -0.603 -0.603 0.000 0.000 -0.612 -0.612 0.000 0.000 -0.307 -0.307 -0.643 -0.643 -0.203 -0.203 0.000 0.000 0.000 0.000 0.000 0.000 -0.629 -0.310 0.000 -0.296 -0.296 -0.658 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.599 0.000 -0.603 -0.603 0.000 0.000 -0.612 -0.612 0.000 0.000 -0.307 -0.307 -0.643 -0.643 -0.203 -0.203 -1.03356953 9.47527401 9.23093141 13.85950596 -1.03356953 9.60039224 10.93587539 9.80726684 9.55426632 -0.03356953 1.28841763 3.42591578 10.60311352 8.87937832 0.55149141 NA 2.77384867 5.88535228 -0.03356953 -0.03356953 11.880121 7.131396 11.72304521 12.96947966 3.72137266 12.08429432 9.38855357 9.28616105 9.87937816 8.26569708 3.21442015 9.48415828 12.43116228 5.53634514 8.36309352 9.16247618 8.54580470 8.74127585 14.15893584 7.44626947 7.95517387 6.77384340 3.77384867 9.88981635 11.21174450 9.30522523 8.81197894 10.80056482 8.96225605 6.78027072 8.11981317 7.58119908 7.43409442 11.69036310 5.07501485 6.50564803 8.61754056 10.56779545 12.29390120 9.61754056 10.02853503 7.61394708 11.29291838 4.55924706 6.58119908 3.82447256 7.34152861 11.87469386 9.67125710 10.18988730 -0.03356953 10.03526718 9.04196792 10.27482796 8.95784062 11.84549770 9.00814818 5.32404010 10.23151785 NA 7.58487458 8.07762435 6.90900380 10.30036537 5.05394977 9.89278489 10.07435986 2.42591578 4.72137813 10.60356654 11.47824153 9.94448426 10.45432891 10.98642708 9.46034429 9.47031458 7.42181574 7.64948325 9.36416355 9.09834586 2.87338013 8.68073435 -0.03356953 0.55149141 NA NA 11.36251564 9.47527401 10.50176425 -1.03356953 8.61214715 8.62207342 7.65648707 7.69440943 9.96648887 TCGA-W5-AA39 81 1 170 NA bile duct stage ii t2 n0 m0 male 2010 no cholangiocarcinoma; intrahepatic rx white not hispanic or latino 2 1 2 2 5 4 2 4 3 5 0 0 0 0 0 0 0 0 0 0 0 0 6 5 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 2.257508e-05 6.935508e-06 5.29344073647871 1.49597238204833 26.2370540851554 49.7123130034522 17.2612197928654 10.671511 10.667386 10.333012 3.678703 7.919710 9.855895 15.465973 16.663377 12.270479 11.517333 10.010433 10.352412 4.306736 NA 7.532153 9.651812 6.327795 9.155761 10.374088 NA NA 9.436016 9.579019 1.219277 1.51840000 -0.01092200 -0.00899060 -0.88588000 -0.90813000 -0.86507000 -0.87393000 0.77753000 0.79316000 -0.00069303 -0.00069303 -0.00498440 -0.01092200 -0.00899060 0.00513590 0.00444110 0.00444110 0.00444110 0.00444110 0.01042400 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.887 0.000 0.000 0.000 -0.072 0.793 -0.049 -0.867 2.208 0.778 0.793 0.793 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.887 0.000 0.000 0.000 -0.072 0.793 -0.049 -0.867 2.208 0.778 0.793 0.793 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 2.219277 8.045819 6.126161 15.104823 1.219277 10.463634 9.452890 10.888155 9.861322 NA 9.777691 9.628661 16.144314 12.118249 14.364247 NA NA 5.026623 NA NA 11.25911 11.80658 12.646845 12.912103 2.804239 11.671511 10.671511 8.980821 9.150007 10.667386 2.219277 8.848627 10.929215 5.974158 6.594310 9.768092 7.418942 9.967463 12.389195 5.611588 6.150007 7.645535 3.219277 10.542325 11.591575 9.948891 8.462444 10.614804 10.804232 7.327794 8.872007 8.742832 7.947190 10.400422 3.389195 6.541197 10.267757 9.138133 12.214684 10.127663 10.541198 8.007173 12.058474 0.219215 8.095787 2.219277 9.111054 11.097321 9.815460 9.945488 NA 6.150007 8.912757 8.738906 5.942282 10.088093 9.760367 3.541193 9.674597 0.219215 7.994057 6.678702 7.532153 10.036589 4.467195 9.997347 12.644748 3.389195 6.126161 10.126161 11.461253 10.637123 11.479013 12.767369 9.319932 9.955672 6.389195 2.804239 8.670481 6.077252 0.219215 10.167637 NA NA 3.678703 NA 11.607233 8.394196 11.400422 0.219215 8.230497 8.171370 8.013686 8.207955 8.296086 TCGA-W6-AA0S 46 0 NA 808 bile duct stage i t1 n0 mx female 2013 no cholangiocarcinoma; intrahepatic r0 white hispanic or latino 2 2 3 4 2 2 1 1 2 1 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 4 0 0 0 0 0 0 0 0 2.982269e-06 1.075004e-06 17.7966101694915 8.47457627118644 54.2372881355932 8.47457627118644 11.0169491525424 10.015685 10.296337 9.836565 8.723828 6.922928 11.157745 14.979777 14.818126 11.217549 12.369882 10.442073 10.167292 3.382363 NA 8.080275 9.811671 11.897163 7.511643 10.614671 NA NA 10.148738 10.837313 2.507896 0.02440800 0.00110930 0.02791900 -0.76424000 -0.76312000 -0.76312000 -0.75242000 0.02398700 -0.76029000 -0.74890000 0.00249690 -0.00027724 0.00110930 -0.76518000 0.00360760 0.00847430 -0.77814000 -0.77814000 -0.77814000 0.68924000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.750 0.000 0.000 0.000 0.000 0.000 -0.764 0.000 -0.718 0.000 -0.732 -0.779 0.000 0.000 -0.763 0.000 0.000 -0.752 0.000 0.000 -0.763 -0.763 0.000 0.000 0.000 0.000 0.000 0.000 -0.219 -0.219 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.750 0.000 0.000 0.000 0.000 0.000 -0.764 0.000 -0.718 0.000 -0.732 -0.779 0.000 0.000 -0.763 0.000 0.000 -0.752 0.000 0.000 -0.763 -0.763 0.000 0.000 0.000 0.000 0.000 0.000 -0.219 -0.219 4.507890 7.885824 7.374139 13.834928 -1.077041 9.687800 10.903782 10.309329 9.708380 -1.077041 NA 4.623369 14.823087 4.280481 NA 1.244826 -1.077041 7.185023 1.244826 1.507871 11.53963 10.03014 11.14964120 9.93903979 4.94529400 12.21654329 10.01568503 10.27605273 10.26389075 10.29633695 5.97820936 7.69441709 13.86805167 7.84179139 4.31524740 10.60899068 10.09598044 10.90306750 14.04870462 11.73670913 8.27607461 8.59712031 5.34919187 10.59667868 11.69128805 9.99840708 9.33443889 11.22898964 9.15414925 6.91728137 8.95036401 8.88148078 7.00507656 12.67750234 5.74310560 7.42675368 7.49278333 9.66523731 12.67833717 10.52979577 10.10904224 8.55046168 11.77604253 6.09295371 10.56903655 2.92292092 10.43566839 11.66713111 9.97277650 9.45917523 NA 8.91728137 8.72058937 9.86177241 8.61095100 11.71531156 10.35233469 9.03275849 10.57666876 5.15174519 9.35128821 8.27165631 8.08027498 9.58860146 7.88871220 9.98091971 10.24485603 4.20832997 5.65084783 10.44893800 10.89231444 10.15822416 10.55046187 11.25468468 10.34761915 10.23524371 5.67781547 4.73028128 8.70592608 10.84439703 1.50787074 9.41478099 -0.07704104 NA -1.07704104 1.50787074 11.91052596 8.63201187 10.37310821 -1.07704104 8.42476508 8.63717332 7.81471191 8.45820317 10.41026552 TCGA-W6-AA0T 62 0 NA 656 bile duct stage iii t3 n0 m0 female 2013 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCGA-WD-A7RX 71 1 21 NA bile duct stage ii t2b nx mx female 2013 no cholangiocarcinoma; intrahepatic rx white hispanic or latino 4 1 1 3 5 4 1 4 1 5 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 3.502432e-06 1.005649e-06 18.0451127819549 6.76691729323308 53.3834586466165 12.781954887218 9.02255639097744 10.34801880 10.23740418 9.77429702 7.66426451 8.06997600 10.16304178 14.85548912 15.64453633 12.03265847 12.23834105 9.46309538 9.74646847 0.06433105 -0.93566895 9.09501876 9.68273726 10.06223682 7.63799851 10.43830429 0.06433105 NA 11.07207980 10.26953406 NA 0.425950 2.648300 0.089434 -0.545930 -0.503910 -0.521110 -0.476700 0.052668 -0.500580 -0.507410 -0.507410 0.000000 -0.498820 -0.442640 -0.487210 -0.113120 -0.654260 -0.654260 -0.654260 0.013632 0.000 0.000 -0.506 -0.163 0.000 0.000 -0.482 -0.654 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.393 0.000 0.000 0.000 0.000 0.000 0.000 -0.479 0.000 0.000 0.000 0.000 0.000 0.000 -0.490 0.000 0.000 -0.498 -0.498 -0.507 -0.507 -0.140 -0.140 0.000 0.000 -0.506 -0.163 0.000 0.000 -0.482 -0.654 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.393 0.000 0.000 0.000 0.000 0.000 0.000 -0.479 0.000 0.000 0.000 0.000 0.000 0.000 -0.490 0.000 0.000 -0.498 -0.498 -0.507 -0.507 -0.140 -0.140 3.819239 8.558207 9.226743 13.268235 NA 9.246746 9.231770 9.690973 9.380633 -0.935669 8.490616 8.960684 16.183495 9.979484 13.433472 -0.935669 -0.935669 4.312280 -0.935669 -0.935669 14.50083 12.28367 11.21948613 13.95185791 NA 11.34772948 10.34801880 9.66519377 10.00025329 10.23740418 7.73323637 8.88771900 12.83573797 6.66426523 7.21916949 10.08046354 8.40420149 9.53907155 13.85576897 8.18069539 7.53602725 9.16238378 6.11963423 10.95537587 11.85954309 10.44264653 8.34280095 10.99138884 9.30275635 7.69006085 8.37510070 8.31938039 8.21916997 12.00833159 6.77171130 8.59573302 10.05232622 9.03157798 12.68789029 9.61028149 9.72790974 8.64366755 11.16796733 7.31630778 9.21790367 3.76479199 8.31227898 11.71068536 9.57214635 10.14982408 2.23428671 9.11556053 9.17287625 10.26647548 10.10333240 12.04698881 9.12369620 7.12504765 10.04734521 4.52378148 7.38627984 8.37723483 9.09501876 9.22278476 8.83584104 10.14583511 9.90197964 8.39078117 7.84571146 10.42190366 10.69051697 10.59914091 10.51091812 10.53399349 10.11420016 9.62563963 7.76131919 6.65680810 9.07418027 9.07418027 NA 9.62659409 8.52173273 2.52378775 0.06433105 4.61894338 11.00289474 8.46309518 10.97686681 0.06433105 8.81086593 8.17809363 8.19363476 7.82590263 10.08115998 TCGA-YR-A95A 52 1 26 NA bile duct stage iv t2 nx m1 male 2009 no cholangiocarcinoma; hilar/perihilar r1 white NA 1 2 3 4 5 4 2 6 5 5 6 0 4 0 6 0 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 4 4 0 0 0 0 0 0 0 0 0 0 0 3.190334e-06 1.179036e-06 18.75 9.375 53.90625 13.28125 4.6875 9.7363025 10.8721201 10.0716294 5.9473623 6.6897115 9.8730077 14.6781744 14.9397747 11.8286343 12.6618654 10.0084125 9.9218580 0.2058929 -0.7941071 9.9954297 9.8316049 11.6022333 8.0598295 10.2880452 0.7908554 -0.7941071 11.0862449 10.4274832 -0.7941071 0.6760400 -0.0816050 0.0147490 -0.7367900 -0.7395000 0.0129340 -0.7503400 -0.7454200 -0.7569400 -0.0012473 -0.0012473 0.0000000 -0.7433400 0.0000000 -0.0064573 -0.0041546 0.0349590 0.0349590 -0.0045695 0.0063871 0.000 0.000 -0.748 -0.748 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.739 -0.144 -0.144 0.000 0.000 -0.748 -0.748 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.739 -0.144 -0.144 2.9063326 8.1217754 8.4466876 13.9287570 NA 9.6571073 11.0904482 10.3287241 10.2115206 3.1127835 6.6977488 7.2557443 15.3358633 9.7566429 11.7159185 NA NA 3.7908554 -0.7941071 NA 13.69120 11.06388 11.6014302 14.0745740 0.7908554 12.1447406 9.7363025 9.1831761 9.9929824 10.8721201 5.2058968 9.5841910 13.8211234 10.3287241 5.7908580 10.0576451 8.9574402 10.1687921 14.9260067 7.7215962 8.3531009 5.8206053 5.5634480 10.9503095 11.4018772 9.0669831 7.9707680 11.0168694 9.8923966 7.2665917 7.7668403 8.3957205 6.6237484 12.8683420 7.2338018 7.9540887 11.0300593 9.4726827 12.1368182 9.7411715 10.6394815 8.7643170 11.3280770 3.7444302 8.5960652 3.2058929 7.3907717 11.8157674 8.7681387 10.0196773 0.2058929 10.9515705 8.7431144 9.8985116 10.9774846 10.7776488 8.3012932 5.7757512 10.2178221 3.7908554 8.2638879 8.3248371 9.9954297 8.8806356 8.6416497 10.9154107 9.9691085 4.2058929 7.1007138 10.4889845 11.6537542 10.2692912 10.3499170 10.8667834 9.9921657 8.9490475 6.6571069 7.6237484 8.4866669 7.4298979 4.4153463 9.0084124 -0.7941071 NA -0.7941071 -0.7941071 10.6050939 9.5689358 10.4024983 NA 8.3632429 8.2415199 7.4538237 7.5678397 10.2094140 TCGA-ZD-A8I3 73 1 169 NA bile duct stage ii t2 n0 m0 female 2013 no cholangiocarcinoma; intrahepatic r0 asian not hispanic or latino 1 3 1 3 4 5 4 3 5 4 6 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 3.051624e-06 9.362936e-07 17.3913043478261 6.95652173913043 53.9130434782609 9.56521739130435 12.1739130434783 10.29998595 10.60301409 10.05933135 9.89620009 7.97972356 10.45819753 15.11241104 14.83627733 11.86949653 11.81027523 10.15518671 9.87621886 1.27929299 -0.04260539 9.55726858 10.08147691 11.45794861 8.59205781 10.30442331 NA -1.04275399 11.25226355 9.51768848 -1.04275399 0.3300400 3.6569000 0.3219800 -0.5302700 -1.2929000 -0.4572100 0.3357000 0.3189200 -0.5240400 -0.5364700 -0.5364700 -0.0134670 0.0243420 0.3219800 -0.0142930 -0.0097458 -0.0120900 -0.0120900 -0.0120900 0.3101000 0.000 0.000 0.000 0.000 0.322 0.322 0.000 0.000 0.000 0.310 0.310 0.316 0.316 0.312 0.312 0.000 0.000 0.000 0.330 0.297 0.297 0.000 0.000 0.355 0.355 -0.455 -0.455 0.322 0.322 0.319 0.319 0.000 -0.525 -0.353 -0.353 0.000 0.000 -0.536 -0.536 0.000 0.000 0.000 0.000 0.000 0.000 0.322 0.322 0.000 0.000 0.000 0.310 0.310 0.316 0.316 0.312 0.312 0.000 0.000 0.000 0.330 0.297 0.297 0.000 0.000 0.355 0.355 -0.455 -0.455 0.322 0.322 0.319 0.319 0.000 -0.525 -0.353 -0.353 0.000 0.000 -0.536 -0.536 0.000 0.000 7.53478454 8.68697633 10.00038288 13.50954442 -1.04275399 9.93320363 11.82829828 9.86048442 10.15641444 1.95735747 4.24275492 2.95735747 14.28248541 6.75825520 NA NA 5.43308964 6.24275873 0.54230758 -0.04260539 16.25599 11.11880 11.55959056 11.69713625 5.16680782 12.10392432 10.29998595 10.51864362 10.61645961 10.60301409 5.26113586 9.75258370 12.60840736 9.25082731 7.14223064 9.90936885 9.49942019 9.24044409 13.74004680 9.11343875 9.78866287 5.85217367 5.60121217 11.34510376 11.58556425 9.75420640 8.70554841 11.60773430 9.84076266 7.51959773 8.89048561 9.15702804 8.30386932 12.62989150 7.34105976 7.69206517 9.62712655 9.84228937 12.41640300 7.63683557 10.13664282 8.78072282 12.00550192 5.32630004 9.90791154 2.41678571 6.06588031 12.55063007 9.18617442 9.96648440 0.54230758 10.28883251 9.17894291 9.86274273 10.75982354 11.37388933 9.30608380 4.04482249 10.41062625 1.54230758 8.87323492 8.68186947 9.55726858 9.55540819 8.45303065 10.73666465 9.99352931 4.12727834 6.86424682 10.53572834 11.93803079 10.33239511 9.63243055 10.27137233 10.37836856 8.87770837 4.54231997 6.17652424 8.67674448 8.87323492 -1.04275399 8.89399374 NA -0.04260539 NA NA 11.19635444 10.55912649 11.15978564 -1.04275399 8.86574842 8.41742260 7.94604011 7.86724846 10.05341196 TCGA-ZH-A8Y1 74 1 385 NA bile duct stage iva t3 n1 m0 female 2012 no cholangiocarcinoma; intrahepatic r1 white not hispanic or latino 1 3 1 1 6 6 3 5 4 3 0 0 0 0 0 0 0 0 0 0 0 4 7 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 2.566138e-06 7.629059e-07 12.3711340206186 8.24742268041237 51.5463917525773 18.5567010309278 9.27835051546392 10.8911142 9.9668221 10.1796887 8.9190302 8.8309385 10.0872784 14.8096315 13.4079765 12.1142386 11.5930644 10.2599346 10.7653503 1.1691554 1.4910835 8.2855044 9.7718595 10.4417903 7.5423741 10.6670124 -0.8308446 -0.8308446 11.5854303 9.1378273 0.1691554 1.4759000 0.0088920 0.0000000 -0.7581900 0.0227250 -0.7771900 -0.0092666 -0.0040438 -0.0067813 0.1300100 -0.7668300 -0.7843700 0.0088920 0.0000000 -0.3270100 -0.0015243 -0.0015243 -0.0015243 -0.0015243 -0.7525300 0.000 0.000 0.000 0.000 0.000 0.000 -0.330 0.000 0.000 0.816 -0.753 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.457 0.000 0.000 0.000 0.000 0.000 0.640 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.658 0.000 0.000 0.000 -0.631 -0.761 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.330 0.000 0.000 0.816 -0.753 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.457 0.000 0.000 0.000 0.000 0.000 0.640 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.658 0.000 0.000 0.000 -0.631 -0.761 0.000 0.000 2.4910835 7.2984439 8.2619177 13.4419361 NA 10.1153358 9.1464404 9.9554302 10.2619177 NA 2.3390804 2.1691554 11.5732377 2.7541179 2.6285870 -0.8308446 0.1691554 6.2566239 6.8486405 NA 13.85139 14.04126 11.7637185 11.8466600 -0.8308446 12.5810687 10.8911142 10.3415881 10.7456449 9.9668221 4.2984457 9.7700028 12.6320462 10.2770315 5.4170896 9.5090105 9.8609042 8.7634853 12.9087302 9.8885494 7.5311046 7.4637810 5.7083197 12.0286954 13.0997972 9.3465802 9.1349448 11.7366414 10.6296164 7.9635764 7.1975637 7.6367660 8.1831813 9.6739796 5.7390164 7.5485391 10.1991380 10.7179825 12.4727987 9.7930421 10.1342234 7.9829417 10.4141189 4.5295274 10.5485389 5.0518028 8.8765197 11.8204366 9.1102082 9.9933238 1.4910835 8.3087117 9.2789911 10.7314030 11.9992835 10.8525939 10.1043257 8.6058721 9.3577495 4.4170896 9.2737592 8.5420255 8.2855044 9.2129807 6.3583927 10.9286327 9.7792627 1.4910835 6.5870124 10.5425695 11.6524725 11.1116751 9.1087398 10.0571428 10.2224077 9.7409132 4.0271452 7.5045513 8.7275812 9.3428376 1.1691554 9.2499781 -0.8308446 -0.8308446 NA NA 11.8005105 10.8402593 11.2763777 0.7541179 9.6100297 7.5600607 6.8970807 7.2298561 10.0472115 TCGA-ZH-A8Y2 59 1 701 NA bile duct stage i t1 nx m0 female 2011 no cholangiocarcinoma; intrahepatic r0 black or african american not hispanic or latino 4 2 3 3 4 5 4 5 4 2 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 7 0 0 0 0 0 0 0 0 3.849207e-06 9.016161e-07 14.2857142857143 4.28571428571429 57.8571428571429 15.7142857142857 7.85714285714286 10.90536158 10.61260942 10.19483231 9.39792422 7.49019224 10.60970852 15.75512074 14.40562922 11.40602846 10.54891812 9.30294525 10.72007646 1.06812045 -0.93181074 9.56298343 10.31664844 11.67661372 9.15788298 10.52345512 0.06818926 -0.93181074 10.61646816 10.83258483 5.86254314 0.955200 0.374310 2.452300 -0.682450 -0.561510 -0.561510 -0.553410 -0.580120 -0.551880 -1.292900 -0.601040 0.000000 -0.628210 -0.086446 -0.035510 -0.565590 -0.591440 -0.631360 -1.292900 0.053173 -0.509 0.000 0.420 0.420 0.000 0.000 0.000 -0.591 0.389 0.000 0.000 0.765 0.765 0.000 0.000 0.287 0.287 0.951 0.951 0.363 0.363 -0.556 -0.156 0.440 0.440 -0.562 -0.562 -0.550 -0.550 0.487 0.487 0.439 -0.089 0.460 0.460 -0.156 0.455 -0.601 -0.601 0.000 0.000 -0.509 0.000 0.420 0.420 0.000 0.000 0.000 -0.591 0.389 0.000 0.000 0.765 0.765 0.000 0.000 0.287 0.287 0.951 0.951 0.363 0.363 -0.556 -0.156 0.440 0.440 -0.562 -0.562 -0.550 -0.550 0.487 0.487 0.439 -0.089 0.460 0.460 -0.156 0.455 -0.601 -0.601 0.000 0.000 7.84291474 8.19741084 9.22167991 14.23413399 -0.93181074 9.48914069 10.12882386 9.39230841 9.67730668 0.06818926 NA 2.52757084 15.29258183 7.30653294 NA NA 3.15558734 6.19741133 5.44316569 1.65310589 12.98674 9.18187 10.76422605 11.62559160 0.65306002 11.88930393 10.90536158 9.74055321 9.92610886 10.61260942 4.84948892 9.98101721 13.06327669 8.19998489 4.97502022 10.38780000 9.10155081 8.86091812 13.13329153 8.37646708 2.65308295 7.72633943 5.51107265 11.41547243 12.38594747 10.04397587 8.57592265 10.91400991 9.60437513 7.59560510 7.49523146 8.44316734 7.84291474 11.89010111 4.49439001 8.00181857 9.37190860 10.10086244 12.53331163 9.60728666 9.79093539 8.53776974 11.08284580 4.27836396 11.35410797 2.76856546 8.40128316 12.25331305 9.80790855 9.51933903 -0.93181074 8.35121621 8.28001629 9.88030518 9.48436595 11.26196120 9.46580248 4.52755833 10.58333489 4.06812905 8.35814655 8.20767912 9.56298343 9.05840201 8.75812592 11.53522390 9.36159950 3.59169138 7.41685578 10.18317149 11.83693247 10.05894094 9.58185548 9.89069869 10.42402947 9.33725460 6.99886569 4.90101650 9.77116623 8.67175405 3.31605883 9.30414206 0.65306002 2.23805310 NA 1.06812045 11.26189035 9.21533278 10.81506198 0.06818926 9.06248144 8.01406902 8.25547996 7.26779982 10.32315645 TCGA-ZH-A8Y3 61 1 561 NA bile duct stage ii t2a n0 m0 female 2010 yes cholangiocarcinoma; intrahepatic r1 black or african american not hispanic or latino NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCGA-ZH-A8Y4 58 1 741 NA bile duct stage i t1 n0 m0 male 2010 no cholangiocarcinoma; intrahepatic r1 white not hispanic or latino 3 3 NA NA 5 4 3 2 3 2 0 6 0 0 0 0 0 0 0 0 4 4 7 0 0 0 0 0 0 0 0 6 7 0 0 0 0 0 0 0 0 0 4 0 7 0 6 0 0 0 3.745175e-06 9.709712e-07 24.2647058823529 5.14705882352941 58.0882352941177 11.0294117647059 1.47058823529412 10.03803637 8.51297783 10.43937993 11.06927541 7.05258870 9.15177360 15.37558633 16.12905052 11.49710530 11.97032052 10.52915058 10.08448394 -0.04543143 -1.04543143 8.47615767 9.82800110 12.09154815 9.01781726 10.93790695 -0.04543143 NA 10.41654802 10.81137156 NA 0.801110 -0.324600 0.399280 -0.781420 -0.740890 -0.723410 -0.714620 0.169110 -0.737920 -0.738880 -0.738880 -0.316570 -0.795860 0.399280 -0.085722 -0.730990 -1.210000 -0.777870 -0.777870 -0.390850 -0.317 -0.317 -0.325 -0.325 0.399 0.399 -0.125 -0.741 0.107 -0.110 -0.242 -0.160 0.085 -0.147 -0.714 0.000 0.000 0.801 0.801 -0.340 -0.340 -0.364 0.000 0.000 0.000 0.000 0.000 -0.126 -0.717 0.169 0.169 0.546 -0.738 0.265 0.265 0.000 0.000 -0.739 -0.739 -0.193 -0.193 -0.317 -0.317 -0.325 -0.325 0.399 0.399 -0.125 -0.741 0.107 -0.110 -0.242 -0.160 0.085 -0.147 -0.714 0.000 0.000 0.801 0.801 -0.340 -0.340 -0.364 0.000 0.000 0.000 0.000 0.000 -0.126 -0.717 0.169 0.169 0.546 -0.738 0.265 0.265 0.000 0.000 -0.739 -0.739 -0.193 -0.193 6.0313731 9.2468786 8.6463006 14.0812212 NA 9.4613605 9.6875723 9.2457276 9.4037057 1.5395311 6.2213435 5.8614468 14.2076289 8.2628959 10.5196592 NA NA 2.4140002 0.5395311 -1.0454314 12.00302 11.19565 10.71735427 11.18907510 4.38081948 12.06389798 10.03803637 10.61900430 10.23938109 8.51297783 4.59841285 9.74490547 12.97943697 6.86744679 4.73591746 9.81641939 8.75707327 9.00848297 12.36262136 8.15668077 7.61276826 6.34687359 5.25833801 10.54327170 11.79806988 9.54981450 8.29663177 11.14252761 9.33718100 7.34687447 7.81998106 8.72274129 7.30770356 10.01051720 5.46235012 7.74897304 7.91165923 9.50818637 12.28910967 9.69602408 10.23242560 8.09666403 11.05357602 2.53953107 10.12885852 3.27648178 7.55818343 11.92807502 9.26061874 9.66191613 0.53953107 11.12322918 9.13197654 9.58026592 10.62255997 11.64869723 9.10176194 3.65499684 10.09538674 1.27649667 8.91455884 7.98246316 8.47615767 9.51543433 6.99895141 9.82337966 9.45937608 3.59841285 6.66191630 10.30715230 12.09921527 9.53669909 10.29829792 11.07025098 9.39126851 8.98384411 4.65499684 5.31210968 9.10176194 6.87342073 0.53953107 8.34472599 0.53953107 -0.04543143 0.53953107 -0.04543143 11.33981277 9.21312318 11.17674818 0.95456857 8.65672982 7.71434513 7.55446990 7.37662205 9.76271688 TCGA-ZH-A8Y5 69 0 NA 1229 bile duct stage ivb t3 n1 m1 male 2012 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 2 3 3 4 6 6 3 2 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 2.427428e-06 6.588733e-07 20.8791208791209 8.79120879120879 54.9450549450549 7.69230769230769 7.69230769230769 10.4782645 10.9130165 9.4207978 8.8545695 8.3931060 10.9374266 14.1794137 14.0991121 10.9047055 11.5143786 9.8418227 10.6562570 4.8576128 -0.6181629 9.5747880 10.3368021 11.0032439 7.4268191 10.5092284 NA 0.3818371 11.4675173 10.2406369 NA 3.2083000 -0.0149160 -0.0081624 -0.8800800 0.0154470 0.0154470 -0.0092666 -0.0138150 -0.9104700 -0.0220580 -0.8917400 -0.0544200 -0.0076101 -0.8929700 -0.0168410 0.7964600 -0.9013700 -0.9013700 -0.8758000 0.0165650 0.733 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.137 0.785 0.000 0.000 -0.880 1.113 0.782 0.782 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.732 0.000 0.000 0.000 0.000 0.733 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.137 0.785 0.000 0.000 -0.880 1.113 0.782 0.782 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.732 0.000 0.000 0.000 0.000 1.3818924 7.5290838 9.3875034 14.2198024 NA 9.3591587 8.5492968 9.4035528 9.2774541 -0.6181629 1.3818924 4.5111644 12.3991222 0.9668734 NA 4.3591557 NA 6.4207973 4.9668411 NA 14.41057 10.67765 10.9273260 10.6967453 0.7038095 12.6534877 10.4782645 9.6238619 10.3140935 10.9130165 1.5517867 9.6764996 12.4555183 9.6678590 4.4479692 10.0467706 9.9864321 8.8757343 13.9153911 9.1648770 6.1300722 5.3243930 5.5417502 11.0423205 12.7726248 9.7891466 8.9220069 11.3344381 8.8227480 6.8576128 7.6183716 8.6154983 7.8330900 10.2179292 6.4479676 9.0692545 8.8206707 11.1508902 12.6307700 9.5710857 9.8626690 6.9771734 10.5111618 4.9690952 10.2191125 2.0823279 5.3931073 12.3078041 10.2135819 8.6638089 1.8413291 7.8185905 9.0560711 10.3203557 11.3905368 11.0580563 10.0221238 4.1632411 10.6759251 3.3360691 9.0365149 8.2857605 9.5747880 9.4829549 4.5913323 10.5436406 9.7960356 1.7038095 4.6486668 11.0729680 11.1779184 10.8154642 9.4000791 10.1823744 10.9263603 8.5617878 3.1367656 7.6533417 8.8757343 9.1233457 0.9668734 8.0578358 NA -1.6179415 NA NA 11.0574985 8.7580043 11.2191125 -1.6179415 9.3029759 7.7997310 7.4904033 7.9929038 10.0961244 TCGA-ZH-A8Y6 41 0 NA 519 bile duct stage i t1 n0 m0 female 2013 no cholangiocarcinoma; intrahepatic r0 black or african american not hispanic or latino 1 1 2 2 1 7 3 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.95324e-06 1.803232e-06 12.8654970760234 8.18713450292398 61.4035087719298 7.60233918128655 9.94152046783626 11.839995 10.911024 9.983140 8.161539 8.396571 9.693871 13.394411 13.432470 12.070823 13.419384 10.083353 11.453665 5.258425 -0.414076 10.013313 10.347551 10.176587 7.450186 9.668149 NA NA 9.525579 8.286439 6.334193 -0.00027724 -0.00124730 0.00073317 0.00166420 -0.00069303 -0.00069303 0.00000000 -0.00011034 0.00013863 0.00020467 0.00020467 -0.00816650 -0.00678130 0.00791750 0.00083195 -0.00041585 -0.00041585 -0.00041585 -0.00041585 0.00305220 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 NA 6.272501 7.185913 12.312857 NA 10.321556 8.664151 10.385686 10.085348 -1.413884 10.354184 4.673460 12.151459 11.598450 16.163207 NA NA 5.540195 4.012265 NA 12.638176 4.418892 11.391341 14.759540 4.393354 13.353460 11.839995 9.870824 9.631759 10.911024 1.755913 8.901149 13.043252 9.579646 4.140591 9.789348 10.306244 8.645344 14.119786 7.702344 5.889780 6.170963 4.286438 11.654946 14.014309 10.493642 8.806378 11.598450 11.749807 7.859796 7.050464 8.773352 6.720426 11.613215 6.750907 7.504863 10.849269 11.010166 11.762173 11.112010 10.133858 9.481575 11.931128 1.032242 10.489882 3.393361 10.036180 11.756394 10.628685 10.042868 -0.414076 7.943552 10.042354 10.014360 12.252040 9.762796 8.982605 6.961039 10.944102 4.170959 9.635848 7.638568 10.013313 9.971576 6.109561 11.121761 11.245550 -0.414076 8.534367 11.321979 11.835854 11.904944 11.384877 11.902564 11.176353 10.050546 5.608369 8.784445 9.568993 10.425597 -1.413884 11.987146 -1.413884 NA 3.286438 NA 10.956960 10.527047 10.958865 -1.413884 9.529247 8.753368 8.377163 8.121275 10.414930 TCGA-ZH-A8Y7 59 0 NA 755 bile duct stage ivb t3 n0 m1 male 2013 no cholangiocarcinoma; intrahepatic r1 white NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TCGA-ZH-A8Y8 73 0 NA 602 bile duct stage i t1 n0 m0 male 2013 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 4 1 2 2 5 4 4 6 5 4 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 3.537109e-06 7.629059e-07 14.1732283464567 7.8740157480315 60.6299212598425 9.44881889763779 7.8740157480315 10.661925 9.885207 10.190719 9.899574 7.622925 10.438432 15.045052 14.215643 11.101668 11.240399 9.856035 10.544002 4.004447 -1.281036 9.189703 10.040408 10.715164 7.766168 10.516300 0.719052 NA 10.617645 10.554699 2.178460 0.4522400 -0.0014728 0.0164250 -0.5109900 -0.4501800 -0.4501800 -0.4301800 0.0263730 -0.4301800 -0.4745900 -0.4745900 0.0076392 -0.0014728 0.0164250 -0.4174000 -0.4526500 -0.4526500 -0.4526500 -0.5192600 -0.0223320 0.000 0.000 0.000 0.000 0.000 0.000 -0.417 -0.435 0.107 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.452 0.452 0.393 0.393 -0.469 0.000 0.000 0.000 -0.450 0.000 -0.438 -0.438 0.000 0.000 -0.424 0.000 0.000 0.000 -0.471 0.000 -0.475 -0.475 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.417 -0.435 0.107 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.452 0.452 0.393 0.393 -0.469 0.000 0.000 0.000 -0.450 0.000 -0.438 -0.438 0.000 0.000 -0.424 0.000 0.000 0.000 -0.471 0.000 -0.475 -0.475 0.000 0.000 3.7634328 8.3133683 8.8496143 13.2407055 2.3040145 9.4855725 10.1059839 9.9864156 9.5215600 2.6259250 6.4469642 6.2426063 14.7055524 7.8197059 11.3874855 -1.2810357 NA 3.6259367 0.3040437 0.3040437 12.24458 11.47122 11.005024 12.026387 2.040963 12.037869 10.661925 10.132672 10.240644 9.885207 6.779739 9.785133 12.478100 8.256262 6.649781 10.551934 9.710566 9.098422 13.602212 8.956254 6.545592 8.805180 6.545592 10.741065 12.509880 9.972300 9.339263 11.589794 9.262076 7.707728 7.744765 7.649781 7.214899 11.040690 6.564534 9.045473 8.951465 9.854112 12.163541 9.550351 9.941235 8.145309 11.479348 6.531093 9.978198 3.848327 9.727472 11.978640 10.338805 9.506946 1.303985 10.351585 8.915031 10.510614 12.220069 11.313835 9.493007 10.059450 10.685549 5.242606 9.405544 8.465558 9.189703 9.972253 7.421251 10.101668 10.376809 8.523175 6.649781 10.571963 11.903299 10.096254 10.025105 10.171285 10.227334 9.746259 6.004445 5.539224 9.062229 9.923615 0.719052 9.379931 8.540818 3.178476 NA 2.806510 11.297216 9.399403 10.332833 -1.281036 8.646821 8.540036 7.262075 7.871329 9.774326 TCGA-ZU-A8S4 52 1 98 NA bile duct stage i t1 nx mx male 2012 no cholangiocarcinoma; intrahepatic r0 white not hispanic or latino 1 1 NA NA 1 1 4 1 5 4 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 0 0 0 0 3.363722e-06 7.629059e-07 19.0082644628099 7.43801652892562 42.1487603305785 15.702479338843 15.702479338843 10.8978564 10.8925690 10.8785013 9.6867292 8.1430633 12.0254905 15.3014569 16.4488303 11.4976954 11.0440044 9.8216120 9.3087411 NA 0.5808208 9.6988967 8.9573078 9.6342941 6.4665570 10.3295726 2.3177961 NA 9.3567053 9.2330681 1.3177671 -0.00124730 -0.03749000 0.01279500 -0.00221680 0.00249690 0.00249690 -0.28500000 -0.27834000 0.05651300 -0.50173000 -0.04387300 -0.29556000 0.00708260 0.00000000 -0.12351000 -0.28560000 0.00055459 0.00055459 0.00055459 0.00332990 0.000 0.000 0.000 0.000 0.000 0.000 -0.124 0.000 -0.220 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.173 0.000 0.000 0.000 0.000 -0.286 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.109 -0.109 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.124 0.000 -0.220 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.173 0.000 0.000 0.000 0.000 -0.286 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.109 -0.109 0.000 0.000 0.000 0.000 0.000 0.000 7.527239 6.308741 6.744051 12.635877 NA 10.328454 8.375237 10.563814 10.173901 NA 4.455288 5.145604 14.469627 6.565714 6.872376 5.723780 NA 4.165783 2.455281 2.580821 13.50136 9.74489 12.176233593 10.711391226 -1.004045212 11.345692316 10.897856420 9.246156515 10.044345072 10.892568999 8.521379013 9.183210325 12.307180797 6.550446674 4.803211535 11.195837240 9.817632210 9.025145377 11.574230916 11.410543465 5.388175758 9.243785690 5.083319758 10.236649508 12.855974266 10.940204271 9.920670690 11.033061938 9.566662582 7.650493885 9.321467261 7.975997531 8.422122809 10.001482790 5.737324420 9.263815185 7.866223055 10.517458676 12.340986206 10.292774389 10.327894696 7.511558173 11.053173054 7.776398157 7.757409345 5.262643623 8.447069171 11.592047951 10.029281152 10.177631691 -1.004045212 8.483698100 9.457337577 10.483195849 9.126995047 10.267321246 9.826373383 5.438801831 9.477657699 -1.004045212 8.684108644 8.379562483 9.698896666 9.973173855 7.409485981 10.027903924 9.522357509 4.550445134 8.153204933 10.556191041 11.414237931 10.983122228 10.863136946 10.529187970 10.361633824 11.600179744 7.349005160 5.580820836 8.699761908 9.526264476 1.317767139 8.168285509 -0.004189894 NA NA 1.317767139 10.957669646 9.293920826 10.939105633 1.317767139 9.084646574 8.087742867 7.029281705 7.723778335 9.901245239 all_p NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.39465584268314e-08 6.85746799659744e-08 7.24796370919214e-08 1.61188638522371e-07 2.73228574458794e-07 2.49918002601626e-07 2.68712815845413e-07 4.05980144070931e-07 4.13994414497366e-07 1.64708121774134e-06 6.88929437101475e-07 6.98617074503378e-07 7.17827361826689e-07 7.43155940305756e-07 8.07920348465547e-07 0.000367982772637615 0.000380976620922161 0.000392098838658204 0.000627232663645828 0.000652706914253373 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA all_q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.0371 7.74e-05 0.00152 5.88e-05 0.0835 0.00152 0.00436 7.74e-05 0.0005284936 0.02976986 0.0102 0.0532 7.74e-05 9.2e-12 0.09041383 0.0567 9.2e-12 0.09041383 6.44e-05 0.09041383 0.00851 0.08370561 0.001352503 0.04711993 0.08771354 0.04711993 0.01481786 0.0001794787 0.07647934 0.0005284936 0.02976986 0.0003247105 0.07647934 0.07647934 1.408139e-07 0.09041383 0.08771354 0.09041383 0.02300101 0.09041383 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.013029 0.0013894 0.23748 3.3987e-23 0.02241 0.016387 6.2974e-06 0.16947 0.022382 2.3685e-05 0.067545 0.048655 0.048655 0.067545 0.076931 0.03387 0.00037763 0.00040262 0.00022134 0.23475 0.988 0.988 0.988 0.988 0.988 0.988 0.988 0.988 0.988 0.988 0.988 0.988 0.988 0.988 0.988 0.988 0.988 0.251 3.99e-09 0.274 0.251 0.988 0.988 0.988 0.988 0.988 0.988 0.988 0.988 0.274 0.251 0.988 0.988 0.988 0.988 0.988 0.274 0.988 0.988 0.988 0.988 0.979 0.979 0.756 0.144 0.979 0.979 0.000378 0.0125 0.979 0.979 0.979 0.33 0.979 0.979 0.511 0.979 0.979 0.979 0.979 0.979 0.979 0.00636 0.979 0.991 0.979 3.04e-11 0.979 0.251 0.0185 0.979 0.979 0.979 1.96e-07 0.979 0.979 0.0876 0.945 0.000316 6.67e-06 0.00636 0.003 0.000110971338107525 0.000142350007248534 0.000142350007248534 0.000284917037452143 0.000371506790933357 0.000371506790933357 0.000371506790933357 0.000487851018043696 0.000487851018043696 0.0014556903802398 0.000111825773631335 0.000112376647434755 0.000114435781655496 0.000117425215169551 0.000126538752823266 0.0234937017237517 0.0242076069984526 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